Query psy291
Match_columns 149
No_of_seqs 102 out of 520
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 20:43:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy291.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/291hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d3bb_ b.38.1.1 (B:) B core S 43.8 3.8 0.00027 25.7 1.1 19 40-58 21-39 (81)
2 d1h641_ b.38.1.1 (1:) Archaeal 28.1 11 0.0008 22.6 1.4 23 37-59 22-44 (71)
3 d1i8fa_ b.38.1.1 (A:) Archaeal 24.1 14 0.001 22.4 1.4 23 38-60 23-45 (71)
4 d1v31a_ a.42.1.1 (A:) Hypothet 23.2 21 0.0015 22.8 2.2 21 3-23 17-43 (93)
5 d2fwka1 b.38.1.1 (A:24-115) U6 22.5 18 0.0013 22.7 1.7 22 39-60 27-48 (92)
6 d1i4k1_ b.38.1.1 (1:) Archaeal 21.4 24 0.0017 21.1 2.0 23 37-59 23-45 (72)
7 d1b34b_ b.38.1.1 (B:) D2 core 21.3 35 0.0026 21.6 3.0 21 40-60 27-47 (93)
8 d1th7a1 b.38.1.1 (A:3-78) Arch 20.7 18 0.0013 22.1 1.3 23 37-59 27-49 (76)
9 d1ljoa_ b.38.1.1 (A:) Archaeal 17.5 23 0.0017 21.6 1.3 20 40-59 29-48 (75)
10 d1mgqa_ b.38.1.1 (A:) Archaeal 16.3 36 0.0026 20.3 2.0 23 37-59 26-48 (74)
No 1
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.77 E-value=3.8 Score=25.74 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.8
Q ss_pred ccCeEEeeeCCCCEEeecC
Q psy291 40 KFGKYVGIDQFGNKYYENP 58 (149)
Q Consensus 40 k~g~lVG~D~~GNkYYE~~ 58 (149)
-.|+|+|.|+++|-=-++-
T Consensus 21 ~~G~L~~~D~~~NlvL~~~ 39 (81)
T d1d3bb_ 21 FIGTFKAFDKHMNLILCDC 39 (81)
T ss_dssp EEEEEEECCTTCCEEEEEE
T ss_pred EEEEEEEECCccCEEEcCE
Confidence 3699999999999877653
No 2
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=28.06 E-value=11 Score=22.65 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=18.3
Q ss_pred cccccCeEEeeeCCCCEEeecCC
Q psy291 37 DDLKFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 37 ~~~k~g~lVG~D~~GNkYYE~~~ 59 (149)
+..-.|+|+|.|.+.|-.-.+-.
T Consensus 22 g~~~~G~L~~~D~~mNlvL~~~~ 44 (71)
T d1h641_ 22 GFEFRGRLIGYDIHLNVVLADAE 44 (71)
T ss_dssp SEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEECCCCCeEEeeEE
Confidence 33346999999999999888764
No 3
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=24.13 E-value=14 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=18.4
Q ss_pred ccccCeEEeeeCCCCEEeecCCC
Q psy291 38 DLKFGKYVGIDQFGNKYYENPRY 60 (149)
Q Consensus 38 ~~k~g~lVG~D~~GNkYYE~~~~ 60 (149)
..-.|+|++.|++.|---++-.+
T Consensus 23 ~~~~G~L~~~D~~mNivL~~~~e 45 (71)
T d1i8fa_ 23 HEIRGILRSFDQHVNLLLEDAEE 45 (71)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEE
T ss_pred CEEEEEEEEECCCcceEEccEEE
Confidence 33469999999999998887643
No 4
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.21 E-value=21 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=17.3
Q ss_pred chhhhhh------HHHHHHHHHHHHHh
Q psy291 3 KLKNFLG------INVLENLRKIYKEN 23 (149)
Q Consensus 3 ~~~~~~~------~~~~~~~~~~i~~~ 23 (149)
.+|.|+| -+++..+|+.|+.+
T Consensus 17 ~La~~lg~~~~sR~~v~k~iw~YIk~n 43 (93)
T d1v31a_ 17 ALMDVLGIEVETRPRIIAAIWHYVKAR 43 (93)
T ss_dssp HHHHHSCCSEECSHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCcCcHHHHHHHHHHHHHHh
Confidence 3567777 68899999999999
No 5
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=22.54 E-value=18 Score=22.68 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.4
Q ss_pred cccCeEEeeeCCCCEEeecCCC
Q psy291 39 LKFGKYVGIDQFGNKYYENPRY 60 (149)
Q Consensus 39 ~k~g~lVG~D~~GNkYYE~~~~ 60 (149)
.-.|+|++.|++.|---++-.+
T Consensus 27 ~~~G~L~~~D~~~NlvL~d~~E 48 (92)
T d2fwka1 27 EFSGVLRGFDEYVNMVLDDVQE 48 (92)
T ss_dssp EECCEEEEECTTCCEEEESCCE
T ss_pred EEEEEEEEEcCCCCEEEeeEEE
Confidence 3479999999999999987653
No 6
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=21.40 E-value=24 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=18.7
Q ss_pred cccccCeEEeeeCCCCEEeecCC
Q psy291 37 DDLKFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 37 ~~~k~g~lVG~D~~GNkYYE~~~ 59 (149)
+..-.|+|.|.|++.|-.-++-.
T Consensus 23 g~~~~G~L~~~D~~mNlvL~~~~ 45 (72)
T d1i4k1_ 23 GREFRGTLDGYDIHMNLVLLDAE 45 (72)
T ss_dssp GCEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCeEEeeEE
Confidence 34447999999999999988764
No 7
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.31 E-value=35 Score=21.56 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=17.0
Q ss_pred ccCeEEeeeCCCCEEeecCCC
Q psy291 40 KFGKYVGIDQFGNKYYENPRY 60 (149)
Q Consensus 40 k~g~lVG~D~~GNkYYE~~~~ 60 (149)
-.|+|+|.|+|-|-=-++-.+
T Consensus 27 ~~G~L~afD~~~NlVL~d~~E 47 (93)
T d1b34b_ 27 LLGRVKAFDRHCNMVLENVKE 47 (93)
T ss_dssp EEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEeccceeEEeeceEE
Confidence 369999999999988776543
No 8
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.73 E-value=18 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=18.4
Q ss_pred cccccCeEEeeeCCCCEEeecCC
Q psy291 37 DDLKFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 37 ~~~k~g~lVG~D~~GNkYYE~~~ 59 (149)
+..-.|+|+|.|.+.|---++-.
T Consensus 27 g~~~~G~L~~~D~~mNlvL~~~~ 49 (76)
T d1th7a1 27 NKEVRGMLRSYDQHMNLVLSDSE 49 (76)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEECCCCCEEEeEEE
Confidence 34447999999999999887654
No 9
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=17.49 E-value=23 Score=21.61 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.3
Q ss_pred ccCeEEeeeCCCCEEeecCC
Q psy291 40 KFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 40 k~g~lVG~D~~GNkYYE~~~ 59 (149)
-.|+|.|.|.+-|---++-.
T Consensus 29 ~~G~L~~~D~~mNlvL~~~~ 48 (75)
T d1ljoa_ 29 LVGKLEGVDDYMNLYLTNAM 48 (75)
T ss_dssp EEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEeEEE
Confidence 37999999999999988764
No 10
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.32 E-value=36 Score=20.34 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=18.7
Q ss_pred cccccCeEEeeeCCCCEEeecCC
Q psy291 37 DDLKFGKYVGIDQFGNKYYENPR 59 (149)
Q Consensus 37 ~~~k~g~lVG~D~~GNkYYE~~~ 59 (149)
+..-.|+|+|.|.+.|-.-++-.
T Consensus 26 g~~~~G~L~~~D~~mNl~L~~~~ 48 (74)
T d1mgqa_ 26 DREFRGVLKSFDLHMNLVLNDAE 48 (74)
T ss_dssp TEEEEEEEEEECTTCCEEEEEEE
T ss_pred CCEEEEEEEEECCCCCeEEeeEE
Confidence 34447999999999999988764
Done!