RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy291
(149 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.008
Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 25/131 (19%)
Query: 4 LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
+ NF +V + + I + + + ++ D G +K E + F
Sbjct: 30 VDNFDCKDVQDMPKSILSK----EEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 64 RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
L + Y +L T P ++ + + N+
Sbjct: 85 E----------VLRIN--------YKFL-MSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQ 124
Query: 124 EYVPYSTTRDK 134
+ Y+ +R +
Sbjct: 125 VFAKYNVSRLQ 135
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.66A {Klebsiella pneumoniae}
Length = 165
Score = 30.2 bits (68), Expect = 0.15
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 12 VLENLRKIYKENGG-LKNCWK-TLYLTDDLKFGKYVGIDQFGNKYYENPRYF 61
VLE++R+ GG + + K Y + F Y ++ + ++
Sbjct: 76 VLESIRRTVASAGGQMSDVIKLVQYFRNLDHFPYY-------SRVRK--LFY 118
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 30.4 bits (68), Expect = 0.20
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 14/74 (18%)
Query: 63 GRNRWVIYNPDVGLNYDGSMVPAEWYG----WLHYKTDYTPCEDPGRPVYKWMAEHTQNM 118
G W I LN+DG+++ A H++ RP +
Sbjct: 143 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFR----------RPDVSVQGDEVTLY 192
Query: 119 SGSNKEYVPYSTTR 132
+ ++ VP S
Sbjct: 193 TPEERDPVPLSIHH 206
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 29.5 bits (66), Expect = 0.40
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 42 GKYVGIDQFGNKYYENP------RYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWL 91
GK + Y+ P Y F DVG++ G+ + L
Sbjct: 147 GKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDL 202
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025
putative translation initiation inhibitor; 2.15A
{Streptococcus pyogenes} SCOP: d.79.1.1
Length = 126
Score = 27.7 bits (62), Expect = 0.96
Identities = 5/52 (9%), Positives = 10/52 (19%), Gaps = 11/52 (21%)
Query: 12 VLENLRKIYKENGG-LKNCWK-TLYLTDDLKFGKYVGIDQFGNKYYENPRYF 61
+ + + G L + D K + F
Sbjct: 45 AFDEMERRLALVGLTLDAVVQMDCLFRDVWNIPVM-------EKMIK--ERF 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 27.3 bits (61), Expect = 2.5
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 42 GKYVGIDQFGNKYYENPR------YFFGRNRWVIYNP-DVGLNYDGSMVPAEWYGWL 91
GK + Y+ P Y F Y+ DVG++ G+ + L
Sbjct: 143 GKSALMFNLQEPYFTWPLIAADGGYAFKYENGK-YDIKDVGVDNAGAKAGLTFLVDL 198
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 26.0 bits (56), Expect = 4.8
Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 2/53 (3%)
Query: 99 PCEDPG--RPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF 149
C W T + Y P + W +GR F
Sbjct: 157 TCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF 209
>1t6l_A DNA polymerase processivity factor; processivity fold, replication;
HET: DNA; 1.85A {Human herpesvirus 5} SCOP: d.131.1.2
d.131.1.2 PDB: 1yyp_A*
Length = 290
Score = 25.9 bits (56), Expect = 6.3
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 107 VYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS 142
+ KW+ HT+ K P T + + A PP+
Sbjct: 156 LLKWIGPHTRVKRNVKKAPCPTGTVQILVHA-GPPA 190
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 25.9 bits (57), Expect = 6.7
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 89 GW-LHYKTDYTPCEDPGRPVY 108
GW +HY + C P P
Sbjct: 5 GWKIHYTSTAHACPYPMAPPN 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.460
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,508,285
Number of extensions: 143690
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 29
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)