RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy291
         (149 letters)



>d1t6la2 d.131.1.2 (A:136-270) UL44 {Human cytomegalovirus, HHV-5
           [TaxId: 10359]}
          Length = 135

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 107 VYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPS 142
           + KW+  HT+      K   P  T +  + A  PP+
Sbjct: 21  LLKWIGPHTRVKRNVKKAPCPTGTVQILVHA-GPPA 55


>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 177

 Score = 25.1 bits (55), Expect = 3.0
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 51  GNKYYENPRYFFGRNRWVIYNPDVGLN-YDG 80
            ++ YE+P  F  +N++ I   D  L  YD 
Sbjct: 109 THRPYESPLQFKQKNQFFIDKSDGLLLLYDP 139


>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus
           subtilis [TaxId: 1423]}
          Length = 152

 Score = 25.0 bits (54), Expect = 3.1
 Identities = 6/97 (6%), Positives = 21/97 (21%), Gaps = 2/97 (2%)

Query: 3   KLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFF 62
           +++  L  ++  + +   ++ G        +   +          +++   Y        
Sbjct: 30  RIEENLQCDLPNSYKWFLEKYGAGGLFGVLVLGYNFDHASVVNRTNEYKEHYGLTDGLVV 89

Query: 63  GRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTP 99
             +  V Y                   W         
Sbjct: 90  IED--VDYFAYCLDTNKMKDGECPVVEWDRVIGYQDT 124


>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG
           {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 294

 Score = 25.1 bits (54), Expect = 3.5
 Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 6/95 (6%)

Query: 35  LTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYK 94
           LT         G+   G  +       F     V+ N     ++  ++    +  W    
Sbjct: 174 LTAPEMTVLIGGLRVLGTNHGGTKHVVFTDREGVLTN-----DFFVNLTDMNYL-WKPAG 227

Query: 95  TDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYS 129
            +     D      KW A     + GSN     YS
Sbjct: 228 KNLYEICDRKTNQVKWTATRVDLVFGSNSILRAYS 262


>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT)
           {Escherichia coli [TaxId: 562]}
          Length = 311

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 47  IDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYD---GSMVPAEWYGWLHYKTDYTPCEDP 103
           IDQF          +       I      L+     G  +      WLH +  +TP  D 
Sbjct: 230 IDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDL 289

Query: 104 GR 105
            R
Sbjct: 290 RR 291


>d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 372

 Score = 25.2 bits (54), Expect = 4.1
 Identities = 4/33 (12%), Positives = 14/33 (42%)

Query: 86  EWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNM 118
           + Y    +  ++   E+  + +  ++ + TQ  
Sbjct: 114 KLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGK 146


>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId:
           10665]}
          Length = 137

 Score = 24.4 bits (53), Expect = 4.6
 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 6/33 (18%)

Query: 70  YNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCED 102
           +N       D S +P E+ G      DY P E 
Sbjct: 82  FNIKDTTVQDISDIPQEFRG------DYIPHEA 108


>d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein
          {Bacteroides fragilis [TaxId: 817]}
          Length = 163

 Score = 24.7 bits (53), Expect = 5.0
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 5  KNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGI 47
          K F  +  + +L+    E+  +K          +L   K + +
Sbjct: 2  KKFTCVQDIGDLKSALAESFEIKKDRFKY---VELGRNKTLLM 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.460 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 653,258
Number of extensions: 32052
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 24
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)