BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2911
         (234 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum
          Length = 405

 Score = 32.0 bits (71), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 66  TCSVGEPLGTGTCPTNNSALLMAHFILNAQKIIT-----------NGTKSFSTL-ESSEF 113
           TC     L  G C  ++  L +   +LNA K++T           NGT+ FSTL ++  F
Sbjct: 27  TCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNGTEDFSTLTQNLIF 86

Query: 114 GLSNKFETD 122
           G ++K+  D
Sbjct: 87  GNNSKYIED 95


>pdb|2G2C|A Chain A, Putative Molybdenum Cofactor Biosynthesis Protein From
           Corynebacterium Diphtheriae
          Length = 167

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 98  ITNGTKSFSTLESSEFGLSNKFETDFPSSLISRVA-PEEYQTTIEQINTVLKK 149
           I+ GT+    L   +   S++ + D+   LIS V  PE Y T +E I T LK+
Sbjct: 17  ISTGTRENKALPLLQRLXSDELQ-DYSYELISEVVVPEGYDTVVEAIATALKQ 68


>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
 pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
           From Rhodobacter Sphaeroides
          Length = 802

 Score = 28.1 bits (61), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 23  LTTGKLT---TAPFSFALDQFGFGTSGKVGPLGRKTPVSMQI 61
           L TGK++    +PFS     F  GT+ +VG    + P  M +
Sbjct: 366 LLTGKISEPGNSPFSLTGQPFACGTAREVGTFAHRLPADMVV 407


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,415,501
Number of Sequences: 62578
Number of extensions: 244183
Number of successful extensions: 583
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 9
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)