BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2911
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UKJ5|CHIC2_HUMAN Cysteine-rich hydrophobic domain 2 protein OS=Homo sapiens GN=CHIC2
PE=1 SV=1
Length = 165
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 62/70 (88%)
Query: 113 FGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCCCCTLGCS 172
FGLSNKFE++FPSSL +VAPEE++ +I ++N+ LKK LPVN +WL CGC+CCCCTLGCS
Sbjct: 41 FGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCS 100
Query: 173 LWPVVCLSKR 182
+WPV+CLSKR
Sbjct: 101 MWPVICLSKR 110
>sp|Q9D9G3|CHIC2_MOUSE Cysteine-rich hydrophobic domain 2 protein OS=Mus musculus GN=Chic2
PE=2 SV=1
Length = 165
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 62/70 (88%)
Query: 113 FGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCCCCTLGCS 172
FGLSNKFE++FPSSL +VAPEE++ +I ++N+ L+K LPVN +WL CGC+CCCCTLGCS
Sbjct: 41 FGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLRKNLPVNVRWLLCGCLCCCCTLGCS 100
Query: 173 LWPVVCLSKR 182
+WPV+CLSKR
Sbjct: 101 MWPVICLSKR 110
>sp|Q8CBW7|CHIC1_MOUSE Cysteine-rich hydrophobic domain 1 protein OS=Mus musculus GN=Chic1
PE=2 SV=2
Length = 227
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 62/70 (88%)
Query: 113 FGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCCCCTLGCS 172
FGLSNKF+T+FPS L +VAPEE++T+I ++N+ LKK LPVN KWL CGC+CCCCTLGCS
Sbjct: 103 FGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNSCLKKALPVNVKWLLCGCLCCCCTLGCS 162
Query: 173 LWPVVCLSKR 182
LWPV+CL+KR
Sbjct: 163 LWPVICLNKR 172
>sp|Q5VXU3|CHIC1_HUMAN Cysteine-rich hydrophobic domain 1 protein OS=Homo sapiens GN=CHIC1
PE=2 SV=2
Length = 224
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 61/70 (87%)
Query: 113 FGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCCCCTLGCS 172
FGLSNKF+T+FPS L +VAPEE++T+I ++N LKK LPVN KWL CGC+CCCCTLGCS
Sbjct: 100 FGLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVKWLLCGCLCCCCTLGCS 159
Query: 173 LWPVVCLSKR 182
LWPV+CL+KR
Sbjct: 160 LWPVICLNKR 169
>sp|Q82TH3|HEM1_NITEU Glutamyl-tRNA reductase OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=hemA PE=3 SV=1
Length = 416
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 61 IDLVWTCSVGEPLGTGTCPTNNSALLMAHFILNAQKIITNGTKSFSTLESSEFGLSNKFE 120
+D + + + + T N + H + A K++ G LES GL+NKF
Sbjct: 326 VDFMHWVATRQSVPTIRALRNQAERYRRHELARAHKLLAKGEDPEKVLESLSSGLTNKF- 384
Query: 121 TDFPSSLISRVAPEEYQTTIEQINTVLK 148
PSS+++ +E + IE +N + +
Sbjct: 385 LHLPSSVLNHATDDEREQLIELVNRLYQ 412
>sp|Q0AHU2|HEM1_NITEC Glutamyl-tRNA reductase OS=Nitrosomonas eutropha (strain C91)
GN=hemA PE=3 SV=1
Length = 417
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 89 HFILNAQKIITNGTKSFSTLESSEFGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLK 148
H + A K++ G LES GL+NKF PSS +++V+ +E + +E +N + +
Sbjct: 354 HELSRAHKLLAKGEDPVKVLESLSSGLTNKF-LHSPSSALNQVSNDEREQLVELVNRLYQ 412
Query: 149 KTLP 152
P
Sbjct: 413 LRYP 416
>sp|Q02WK6|HSLO_LACLS 33 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=hslO PE=3 SV=1
Length = 288
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 19 DFRKLTTGKLTTAPFSFALDQFGFGTSGKVGPLGRKTPVSMQIDLVWTCSVGEPLG 74
D++K +TG++ APF G G V +G K P S Q+DL+ T +GE L
Sbjct: 95 DYKKASTGEVLVAPF------VGNGFLVVVKDMGLKQPYSGQVDLI-TGEIGEDLA 143
>sp|A2RN83|HSLO_LACLM 33 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=hslO PE=3 SV=1
Length = 288
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 19 DFRKLTTGKLTTAPFSFALDQFGFGTSGKVGPLGRKTPVSMQIDLVWTCSVGEPLG 74
D++K +TG++ APF G G V +G K P S Q+DL+ T +GE L
Sbjct: 95 DYKKASTGEVLVAPF------VGNGFLVVVKDMGLKQPYSGQVDLI-TGEIGEDLA 143
>sp|Q9CE86|HSLO_LACLA 33 kDa chaperonin OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=hslO PE=3 SV=1
Length = 288
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 19 DFRKLTTGKLTTAPFSFALDQFGFGTSGKVGPLGRKTPVSMQIDLVWTCSVGEPL 73
D++K +TG++ APF G G V +G K P S Q+DL+ T +GE L
Sbjct: 95 DYKKASTGEVLVAPF------VGNGFLVVVKDMGLKQPYSGQVDLI-TGEIGEDL 142
>sp|Q6AYQ1|GOGA7_RAT Golgin subfamily A member 7 OS=Rattus norvegicus GN=Golga7 PE=2
SV=1
Length = 137
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 118 KFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCC 165
+F+T FP+ L +RV ++++ T+ +N + + + + GC+ C
Sbjct: 25 QFQTKFPAELENRVDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLAC 72
>sp|A4XKR2|SYI_CALS8 Isoleucine--tRNA ligase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=ileS PE=3 SV=1
Length = 920
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 178 CLSKRRFFGVSRPLPKCLNVSPSVFVKEVETHCPHVTSREGSAAIVNKIIYYIMGE 233
C+S++R +GV P+ C N + E H + +EGS A +K + ++ E
Sbjct: 457 CISRQRIWGVPIPIFYCKNCRKELITDETIDHIAKIFEKEGSDAWFSKDVKELLPE 512
>sp|Q7Z5G4|GOGA7_HUMAN Golgin subfamily A member 7 OS=Homo sapiens GN=GOLGA7 PE=1 SV=2
Length = 137
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 118 KFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCC 165
+F+T FP+ L +R+ ++++ T+ +N + + + + GC+ C
Sbjct: 25 QFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLAC 72
>sp|Q5EA55|GOGA7_BOVIN Golgin subfamily A member 7 OS=Bos taurus GN=GOLGA7 PE=2 SV=1
Length = 137
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 118 KFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCC 165
+F+T FP+ L +R+ ++++ T+ +N + + + + GC+ C
Sbjct: 25 QFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLAC 72
>sp|Q91W53|GOGA7_MOUSE Golgin subfamily A member 7 OS=Mus musculus GN=Golga7 PE=2 SV=1
Length = 137
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 118 KFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCC 165
+F+T FP+ L +R+ ++++ T+ +N + + + + GC+ C
Sbjct: 25 QFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLAC 72
>sp|Q5ZLC9|GOGA7_CHICK Golgin subfamily A member 7 OS=Gallus gallus GN=GOLGA7 PE=2 SV=1
Length = 137
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 118 KFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCC 165
+F++ FP+ L +R+ ++++ T+ +N + + + + GC+ C
Sbjct: 25 QFQSKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLAC 72
>sp|Q61301|CTNA2_MOUSE Catenin alpha-2 OS=Mus musculus GN=Ctnna2 PE=1 SV=3
Length = 953
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 52 GRKTPVSMQIDLVWTCSVGEPLGTGTCPTN-----NSALLMAHFILNAQKIITNGTKSFS 106
GR + +S + TC+ G P+G+G+ ++ S + A ++NA + + S
Sbjct: 831 GRASQLSTHLP---TCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVAS 887
Query: 107 TLESSEFG--------LSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNA 155
T +G +S K + L+ R PEE+QT + + + K PV A
Sbjct: 888 TKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRR-GSQKKHISPVQA 943
>sp|P26232|CTNA2_HUMAN Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5
Length = 953
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 52 GRKTPVSMQIDLVWTCSVGEPLGTGTCPTN-----NSALLMAHFILNAQKIITNGTKSFS 106
GR + +S + TC+ G P+G+G+ ++ S + A ++NA + + S
Sbjct: 831 GRASQLSTHLP---TCAEGAPIGSGSSDSSMLDSATSLIQAAKNLMNAVVLTVKASYVAS 887
Query: 107 TLESSEFG--------LSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNA 155
T +G +S K + L+ R PEE+QT + + + K PV A
Sbjct: 888 TKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEFQTRVRR-GSQKKHISPVQA 943
>sp|A4IGI7|CTNA2_XENTR Catenin alpha-2 OS=Xenopus tropicalis GN=ctnna2 PE=2 SV=1
Length = 966
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 42 FGTSGKVGPLGRKTPVSMQIDLVWTCSVGEPLGTGT-----CPTNNSALLMAHFILNAQK 96
+ +G V GR + +S+ DL+ +C+ G G+G+ + S + A ++NA
Sbjct: 833 YEVAGDVIAGGRDSQLSL--DLLPSCTEGSLFGSGSRDSTMLDSATSLIQAAKNLMNAVV 890
Query: 97 IITNGTKSFSTLESSEFG--------LSNKFETDFPSSLISRVAPEEYQTTIEQINTVLK 148
+ + ST +G +S K + L+ R PEEYQT + + + K
Sbjct: 891 LTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEYQTRVRR-GSQKK 949
Query: 149 KTLPVNA 155
PV A
Sbjct: 950 HISPVQA 956
>sp|Q6GLP0|CTNA2_XENLA Catenin alpha-2 OS=Xenopus laevis GN=ctnna2 PE=2 SV=1
Length = 966
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 42 FGTSGKVGPLGRKTPVSMQIDLVWTCSVGEPLGTGT-----CPTNNSALLMAHFILNAQK 96
+ +G V GR + +S+ DL+ +C+ G G+G+ + S + A ++NA
Sbjct: 833 YEVAGDVIAGGRDSQLSL--DLLPSCTEGSLFGSGSRDSTMLDSATSLIQAAKNLMNAVV 890
Query: 97 IITNGTKSFSTLESSEFG--------LSNKFETDFPSSLISRVAPEEYQTTIEQINTVLK 148
+ + ST +G +S K + L+ R PEEYQT + + + K
Sbjct: 891 LTVKASYVASTKYQKVYGTAAVNSPVVSWKMKAPEKKPLVKREKPEEYQTRVRR-GSQKK 949
Query: 149 KTLPVNA 155
PV A
Sbjct: 950 HISPVQA 956
>sp|Q2TAP0|GOG7B_HUMAN Golgin subfamily A member 7B OS=Homo sapiens GN=GOLGA7B PE=2 SV=2
Length = 167
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 87 MAHFILNAQKIITNG---TKSFSTLESSEFGLSNKFETDFPSSLISRVAPEEYQTTIEQI 143
MA + N Q++ + TK F + S+ G +F+T FP L SR+ + ++ T++ +
Sbjct: 1 MATEVHNLQELRRSASLATKVFIQRDYSD-GTICQFQTKFPPELDSRIERQLFEETVKTL 59
Query: 144 NTVLKKTLPVNAKWLFCGCVCC 165
N + + GC+ C
Sbjct: 60 NGFYAEAEKIGGSSYLEGCLAC 81
>sp|Q9D428|GOG7B_MOUSE Golgin subfamily A member 7B OS=Mus musculus GN=GOLGA7B PE=2 SV=1
Length = 167
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 87 MAHFILNAQKIITNG---TKSFSTLESSEFGLSNKFETDFPSSLISRVAPEEYQTTIEQI 143
MA + N Q++ + TK F + S+ G +F+T FP L SR+ + ++ T++ +
Sbjct: 1 MATEVHNLQELRRSASLATKVFIQRDYSD-GTICQFQTKFPPELDSRIERQLFEETVKTL 59
Query: 144 NTVLKKTLPVNAKWLFCGCVCC 165
N + + GC+ C
Sbjct: 60 NGFYAEAEKIGGSSYLEGCLAC 81
>sp|B9MRZ5|SYI_CALBD Isoleucine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=ileS PE=3 SV=1
Length = 920
Score = 31.2 bits (69), Expect = 6.5, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 178 CLSKRRFFGVSRPLPKCLNVSPSVFVKEVETHCPHVTSREGSAAIVNKIIYYIMGE 233
C+S++R +GV P+ C N + E + + +EGS A +K + ++ E
Sbjct: 457 CISRQRIWGVPIPIFYCKNCRKELITDETIDYIAKIFEKEGSDAWFSKDVKELLPE 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,075,616
Number of Sequences: 539616
Number of extensions: 3488037
Number of successful extensions: 7470
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7454
Number of HSP's gapped (non-prelim): 24
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)