Query psy2911
Match_columns 234
No_of_seqs 57 out of 59
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 20:45:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4101|consensus 100.0 3E-60 6.5E-65 399.3 4.5 137 84-229 27-163 (175)
2 KOG4069|consensus 100.0 3.3E-37 7.1E-42 256.3 -4.8 140 81-233 5-150 (154)
3 PF10256 Erf4: Golgin subfamil 99.9 6E-24 1.3E-28 165.2 -4.1 104 106-214 4-109 (118)
4 PF15496 DUF4646: Domain of un 69.6 4.9 0.00011 32.7 3.0 86 115-207 29-123 (123)
5 PF08753 NikR_C: NikR C termin 54.3 6.1 0.00013 29.5 0.9 29 4-32 47-78 (78)
6 COG1435 Tdk Thymidine kinase [ 42.3 19 0.00042 32.3 2.3 43 1-43 3-49 (201)
7 PF12146 Hydrolase_4: Putative 40.8 16 0.00034 27.1 1.3 13 34-46 46-58 (79)
8 cd04251 AAK_NAGK-UC AAK_NAGK-U 39.1 17 0.00036 32.2 1.3 59 94-153 25-87 (257)
9 PRK14058 acetylglutamate/acety 33.4 22 0.00047 31.5 1.2 59 93-152 28-90 (268)
10 cd00002 YbaK_deacylase This CD 28.6 47 0.001 26.7 2.3 37 26-63 79-115 (152)
11 PF09373 PMBR: Pseudomurein-bi 27.6 72 0.0016 20.4 2.6 24 129-152 3-26 (33)
12 COG2267 PldB Lysophospholipase 26.4 36 0.00078 30.7 1.4 19 34-52 64-84 (298)
13 COG0404 GcvT Glycine cleavage 25.3 46 0.001 32.0 1.9 37 1-42 56-97 (379)
14 TIGR00011 YbaK_EbsC ybaK/ebsC 23.8 63 0.0014 25.9 2.2 36 26-62 78-113 (152)
15 PF13132 DUF3950: Domain of un 22.4 34 0.00074 22.7 0.3 23 140-162 2-25 (30)
No 1
>KOG4101|consensus
Probab=100.00 E-value=3e-60 Score=399.29 Aligned_cols=137 Identities=41% Similarity=0.817 Sum_probs=134.1
Q ss_pred hhhhhhhhccCCcEEEeCCCCccccceeEecccccccccCChhhhccCChHHHHHHHHHHHHHHHhcccCCceeeecccc
Q psy2911 84 ALLMAHFILNAQKIITNGTKSFSTLESSEFGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCV 163 (234)
Q Consensus 84 ~~~~~~~~~~~~piilrg~G~fsq~~vtv~GLs~kFetEFPseL~gRVapEeFeeTI~rIN~il~kaepvn~rw~lcGCl 163 (234)
.++++..+|.||||+|||+| +||||||++||++|||++|+||||||||++||+|+|.+|+++.|+|+||++|||+
T Consensus 27 ~~ee~~~~y~pePvviRG~G-----niTVFGlsnrFntEfP~~Ltg~vAPEEfkati~RvNsvLKk~lpvnvrWLlCGc~ 101 (175)
T KOG4101|consen 27 SDEEQLPIYIPEPVVIRGAG-----NITVFGLSNRFNTEFPSELTGKVAPEEFKATIGRVNSVLKKHLPVNVRWLLCGCL 101 (175)
T ss_pred cchhhccccCCCCeEEeccC-----ceEEEeccccccccCChhhccccCHHHHHHHHHHHHHHHHhcCCchhHHHHhhHH
Confidence 57788899999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCccceEEeeceeecccCCchhhhhhcCCCceeeccceeeeeccCCCCcchhhHhhHhh
Q psy2911 164 CCCCTLGCSLWPVVCLSKRRFFGVSRPLPKCLNVSPSVFVKEVETHCPHVTSREGSAAIVNKIIYY 229 (234)
Q Consensus 164 cC~CTlGcSlwPviClstRt~~Kvl~~LqK~Ld~EN~rIY~klGLhwrL~~~pceglr~iE~vI~~ 229 (234)
|||||+|||+|||||+++||+ ..|+|+|+|||+++|||+||||+|.++|||++|||||||.+
T Consensus 102 cCCCtlGCSmWPViCLnkRT~----lsleKllewENn~LYHKLgLHW~L~kr~ces~~mmEYVili 163 (175)
T KOG4101|consen 102 CCCCTLGCSMWPVICLNKRTR----LSLEKLLEWENNRLYHKLGLHWRLAKRKCESNNMMEYVILI 163 (175)
T ss_pred HHhhccCccccceeeecHHHH----HHHHHHHhhhhhhHHHHHhhhhhhhhccccccchHhHhhhe
Confidence 999999999999999999999 89999999999999999999999999999999999999964
No 2
>KOG4069|consensus
Probab=100.00 E-value=3.3e-37 Score=256.29 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=131.5
Q ss_pred CCChhhhhhhhccCCcEEEeCCCC-----ccccceeEecccccccccCChhhhccCChHHHHHHHHHHHHHHHhcccCCc
Q psy2911 81 NNSALLMAHFILNAQKIITNGTKS-----FSTLESSEFGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNA 155 (234)
Q Consensus 81 ~n~~~~~~~~~~~~~piilrg~G~-----fsq~~vtv~GLs~kFetEFPseL~gRVapEeFeeTI~rIN~il~kaepvn~ 155 (234)
.|+++..+++++..++| +|+ |.||++ ..|+++||+++||++|.+||+++.|++||+|||++|++||+.++
T Consensus 5 ~~~t~~g~~~~~~~~~~----~~~~~~qifiqrdy-s~g~~vqf~~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~ 79 (154)
T KOG4069|consen 5 RNGTSGGDKRQYETEVI----CRKLNGQIFIQRDY-SKGLDVQFEAEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITP 79 (154)
T ss_pred CCCCCCCCchhHHHHHh----hheecceEEEEecc-cCCcceEEeecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47778888899998887 454 889999 69999999999999999999999999999999999999999999
Q ss_pred eeeecccceeecccCCCccceEEeeceeecccCCchhhhhhcCCCceeeccceeeeeccCCCC-cchhhHhhHhhhhcC
Q psy2911 156 KWLFCGCVCCCCTLGCSLWPVVCLSKRRFFGVSRPLPKCLNVSPSVFVKEVETHCPHVTSREG-SAAIVNKIIYYIMGE 233 (234)
Q Consensus 156 rw~lcGClcC~CTlGcSlwPviClstRt~~Kvl~~LqK~Ld~EN~rIY~klGLhwrL~~~pce-glr~iE~vI~~~~~~ 233 (234)
++||+||+.|. |+ |.++.|+.+||+ |+|++|+|+|++||++|||+.|||+ +||.| ||||||++||+-.|.
T Consensus 80 qty~EgclgC~-Ta---Y~iy~ctethYe-k~L~klskfl~~qNe~IY~~~Gl~l---~dP~eRGLRVieiti~~~~g~ 150 (154)
T KOG4069|consen 80 QTYFEGCLGCF-TA---YAIYACTETHYE-KKLDKLSKFLNRQNEEIYHHVGLHL---RDPMERGLRVIEITIIVSFGS 150 (154)
T ss_pred cchHHHHHHHH-HH---HHHHHHHHHHHH-HHHHHHHHHHHhhhhhhccccceee---cCchhhceEEEEEEEEecccc
Confidence 99999999999 99 778899999999 9999999999999999999999999 99999 999999999987664
No 3
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=99.86 E-value=6e-24 Score=165.18 Aligned_cols=104 Identities=24% Similarity=0.364 Sum_probs=89.8
Q ss_pred ccccee-EecccccccccCChhhhccCChHHHHHHHHHHHHHHHhc-ccCCceeeecccceeecccCCCccceEEeecee
Q psy2911 106 STLESS-EFGLSNKFETDFPSSLISRVAPEEYQTTIEQINTVLKKT-LPVNAKWLFCGCVCCCCTLGCSLWPVVCLSKRR 183 (234)
Q Consensus 106 sq~~vt-v~GLs~kFetEFPseL~gRVapEeFeeTI~rIN~il~ka-epvn~rw~lcGClcC~CTlGcSlwPviClstRt 183 (234)
.+|++. ..|+..+|+++||.+|.++|+|+||+++|++||+.|++| +|.+.+.++.++++|+ |+|+|.| |+.+++
T Consensus 4 i~Rdy~~~~~~~~~Fs~~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~l-t~~l~~~---~~~~~~ 79 (118)
T PF10256_consen 4 IPRDYDTSSGIFPQFSTEYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCL-TLGLSSL---CFKTHY 79 (118)
T ss_pred EeeecCCCCCcCCccCccCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHH---HHHHHH
Confidence 345654 799999999999999999999999999999999999999 7777777777777666 9998887 447777
Q ss_pred ecccCCchhhhhhcCCCceeeccceeeeecc
Q psy2911 184 FFGVSRPLPKCLNVSPSVFVKEVETHCPHVT 214 (234)
Q Consensus 184 ~~Kvl~~LqK~Ld~EN~rIY~klGLhwrL~~ 214 (234)
+ |.+++|++||++.|+++|+++|++|.+++
T Consensus 80 ~-~~~~~le~~l~~~N~~~~~~~gi~ii~pr 109 (118)
T PF10256_consen 80 K-RKLRELEKYLEQLNEELFKPRGIKIISPR 109 (118)
T ss_pred H-HHHHHHHHHHHHHHHHhcccCCcEEEchh
Confidence 7 77899999999999999999999994443
No 4
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=69.58 E-value=4.9 Score=32.68 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=49.8
Q ss_pred ccccccccC-Chhhhcc-CChHHHHHHHHHHHHH--HHhcccCCcee-----eecccceeecccCCCccceEEeeceeec
Q psy2911 115 LSNKFETDF-PSSLISR-VAPEEYQTTIEQINTV--LKKTLPVNAKW-----LFCGCVCCCCTLGCSLWPVVCLSKRRFF 185 (234)
Q Consensus 115 Ls~kFetEF-PseL~gR-VapEeFeeTI~rIN~i--l~kaepvn~rw-----~lcGClcC~CTlGcSlwPviClstRt~~ 185 (234)
+.+.|.--+ |+.|..+ |++|+|..=++-|+.. +...+.. ..+ ...|++ . ++ |+---=++++.+-
T Consensus 29 l~~gFp~~~~P~~l~~~DVs~eDW~~F~~dl~~aa~ls~~~~~-~~~~~~~~~~v~~G--i-~~---~~v~~~~~~~~~~ 101 (123)
T PF15496_consen 29 LSSGFPYLYPPPPLASHDVSEEDWTRFLNDLSEAASLSPSQSI-VAGVGPIVMGVGFG--I-PA---YLVAKAIRKAMKE 101 (123)
T ss_pred cccCCCCcCCCchhhhcCCCHHHHHHHHHHHHHHHhcCcccce-eeeecccccccccc--c-hh---hhhhHhhhhcccc
Confidence 455553332 6688887 9999999999999887 4333322 111 112221 1 11 1100001222222
Q ss_pred ccCCchhhhhhcCCCceeeccc
Q psy2911 186 GVSRPLPKCLNVSPSVFVKEVE 207 (234)
Q Consensus 186 Kvl~~LqK~Ld~EN~rIY~klG 207 (234)
+...+|+.+|+.=|+..|+++|
T Consensus 102 ~k~~~v~~~i~~WN~~FF~PRg 123 (123)
T PF15496_consen 102 KKRGEVESTIDQWNEGFFRPRG 123 (123)
T ss_pred cchHHHHHHHHHHHHHhccCCC
Confidence 3457899999988889999887
No 5
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=54.34 E-value=6.1 Score=29.51 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=23.5
Q ss_pred eeeecCcchhHHHHHHhhhc---ccCcccccc
Q psy2911 4 IVVKGPMNETEKFLRDFRKL---TTGKLTTAP 32 (234)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 32 (234)
|+|+||.++.+.|...++.+ ..|||++.|
T Consensus 47 ivv~G~~~~I~~l~~~l~~~kGV~~~~l~~~~ 78 (78)
T PF08753_consen 47 IVVRGPADRIKELAEKLRSLKGVKHVKLSLIP 78 (78)
T ss_dssp EEEEEEHHHHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred EEEEcCHHHHHHHHHHHhccCCeeEEEEEEcC
Confidence 78999999999998877765 467777765
No 6
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=42.30 E-value=19 Score=32.35 Aligned_cols=43 Identities=35% Similarity=0.561 Sum_probs=36.3
Q ss_pred Ccce-eeecCcch--hHHHHHHhhhcccCcccccccceecccc-ccC
Q psy2911 1 MGKI-VVKGPMNE--TEKFLRDFRKLTTGKLTTAPFSFALDQF-GFG 43 (234)
Q Consensus 1 ~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 43 (234)
||++ ++-||||. ||..||..+.....+..++-|--|+|.+ |.|
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~ 49 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVG 49 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccc
Confidence 4565 56799994 8999999999999999999999999987 443
No 7
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=40.76 E-value=16 Score=27.08 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=11.6
Q ss_pred ceeccccccCCCC
Q psy2911 34 SFALDQFGFGTSG 46 (234)
Q Consensus 34 ~~~~~~~~~~~~~ 46 (234)
-|+.|+.|+|.|.
T Consensus 46 V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 46 VFAYDHRGHGRSE 58 (79)
T ss_pred EEEECCCcCCCCC
Confidence 4789999999997
No 8
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=39.07 E-value=17 Score=32.18 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=44.6
Q ss_pred CCcEEEeCCCCccccceeEecccccccccCChhhhccCChHHH----HHHHHHHHHHHHhcccC
Q psy2911 94 AQKIITNGTKSFSTLESSEFGLSNKFETDFPSSLISRVAPEEY----QTTIEQINTVLKKTLPV 153 (234)
Q Consensus 94 ~~piilrg~G~fsq~~vtv~GLs~kFetEFPseL~gRVapEeF----eeTI~rIN~il~kaepv 153 (234)
..+|++-|.|+|......-.|+..+|-+ .|..+..||++++= +.++.++|..+.+++.-
T Consensus 25 ~~~VlVHGgg~~i~~~~~~~gi~~~~~~-~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv~~L~~ 87 (257)
T cd04251 25 ERLIVVHGGGNYVNEYLKRLGVEPKFVT-SPSGIRSRYTDKETLEVFVMVMGLINKKIVARLHS 87 (257)
T ss_pred CCEEEECCCHHHHHHHHHHcCCCcEEEe-CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999988777777788888843 36666667766544 77789999998887644
No 9
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=33.44 E-value=22 Score=31.54 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=43.2
Q ss_pred cCCcEEEeCCCCccccceeEecccccccccCChhhhccCChH----HHHHHHHHHHHHHHhccc
Q psy2911 93 NAQKIITNGTKSFSTLESSEFGLSNKFETDFPSSLISRVAPE----EYQTTIEQINTVLKKTLP 152 (234)
Q Consensus 93 ~~~piilrg~G~fsq~~vtv~GLs~kFetEFPseL~gRVapE----eFeeTI~rIN~il~kaep 152 (234)
--.+|++-|.|+|..+...-.|+..+|.+- |..+..||+++ .++.++.++|..+.+++.
T Consensus 28 g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~-~~g~~~rvt~~~~l~~~~~a~~~ln~~lv~~L~ 90 (268)
T PRK14058 28 GERVVLVHGGSDEVNELLERLGIEPRFVTS-PSGVTSRYTDRETLEVFIMAMALINKQLVERLQ 90 (268)
T ss_pred CCCEEEEeCCHHHHHHHHHHcCCCceEEeC-CCCCceEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999888877777888888543 55555565544 446677899999887666
No 10
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=28.60 E-value=47 Score=26.73 Aligned_cols=37 Identities=32% Similarity=0.438 Sum_probs=30.0
Q ss_pred CcccccccceeccccccCCCCccccCCCCCcceEEeeE
Q psy2911 26 GKLTTAPFSFALDQFGFGTSGKVGPLGRKTPVSMQIDL 63 (234)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (234)
.++..|+-......+|. ..|-++|+|-+.++..-+|-
T Consensus 79 ~~l~~a~~ee~~~~~g~-~~G~v~P~~l~~~v~~liD~ 115 (152)
T cd00002 79 KKVEMAPPKDAERLTGY-IRGGISPLGQKKRLPTVIDE 115 (152)
T ss_pred CCcccCCHHHHHHhcCC-cccccCccCcCCCccEEEeh
Confidence 45888888888888898 77999999987777766663
No 11
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.60 E-value=72 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred ccCChHHHHHHHHHHHHHHHhccc
Q psy2911 129 SRVAPEEYQTTIEQINTVLKKTLP 152 (234)
Q Consensus 129 gRVapEeFeeTI~rIN~il~kaep 152 (234)
++|+.+|+.+...|+++.+.+.-.
T Consensus 3 ~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred ceecHHHHHHHHHHHHHHHHHcCC
Confidence 678999999999999999887543
No 12
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=26.37 E-value=36 Score=30.73 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=14.9
Q ss_pred ceeccccccCCCC--ccccCC
Q psy2911 34 SFALDQFGFGTSG--KVGPLG 52 (234)
Q Consensus 34 ~~~~~~~~~~~~~--~~~~~~ 52 (234)
.+++|++|+|.|. +.|+..
T Consensus 64 V~~~D~RGhG~S~r~~rg~~~ 84 (298)
T COG2267 64 VYALDLRGHGRSPRGQRGHVD 84 (298)
T ss_pred EEEecCCCCCCCCCCCcCCch
Confidence 3689999999995 666655
No 13
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=25.31 E-value=46 Score=31.99 Aligned_cols=37 Identities=38% Similarity=0.730 Sum_probs=26.2
Q ss_pred CcceeeecCcchhHHHHH-----HhhhcccCcccccccceecccccc
Q psy2911 1 MGKIVVKGPMNETEKFLR-----DFRKLTTGKLTTAPFSFALDQFGF 42 (234)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 42 (234)
||||.|+|| ..++||+ |+.||..||.. ++..|+.-|+
T Consensus 56 mgk~~V~Gp--dA~~~L~~l~~ndv~kl~~Gr~~---Yt~~lne~G~ 97 (379)
T COG0404 56 MGKVEVSGP--DAAAFLQRLLTNDVSKLKPGRAR---YTLMLNEDGG 97 (379)
T ss_pred ceEEEEECC--CHHHHHHHHcccccCcCCCCcEE---EeeeECCCCC
Confidence 899999997 4678875 67777777755 4445665553
No 14
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=23.83 E-value=63 Score=25.89 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=27.6
Q ss_pred CcccccccceeccccccCCCCccccCCCCCcceEEee
Q psy2911 26 GKLTTAPFSFALDQFGFGTSGKVGPLGRKTPVSMQID 62 (234)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (234)
.++.-|+.......+|+. .|-++|+|-..++..-+|
T Consensus 78 ~~~~~a~~ee~~~~~g~~-~G~v~P~g~~~~~~vivD 113 (152)
T TIGR00011 78 KKAEMADPKDAEKVTGYI-RGGISPIGQKKKFPTYID 113 (152)
T ss_pred CCcccCCHHHHHHhcCCc-ccccCCCCcCCCccEEEe
Confidence 458888888877778988 799999998666654444
No 15
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=22.39 E-value=34 Score=22.68 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcccCC-ceeeeccc
Q psy2911 140 IEQINTVLKKTLPVN-AKWLFCGC 162 (234)
Q Consensus 140 I~rIN~il~kaepvn-~rw~lcGC 162 (234)
|++||..++..-+-| +.|....|
T Consensus 2 leQI~~a~~~~~~~NFSaWV~dAC 25 (30)
T PF13132_consen 2 LEQIEIALEQEGSGNFSAWVKDAC 25 (30)
T ss_pred hHHHHHHHHhccCcChHHHHHHHH
Confidence 789999999888777 77776666
Done!