Query psy2911
Match_columns 234
No_of_seqs 57 out of 59
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 20:46:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q5y_A NIKR, nickel responsive 41.0 10 0.00034 27.6 1.3 31 3-33 50-83 (85)
2 2lyc_A Spindle and kinetochore 33.7 33 0.0011 27.6 3.4 32 122-153 17-48 (130)
3 2ook_A Hypothetical protein; s 26.2 35 0.0012 25.9 2.2 29 126-154 25-55 (127)
4 1azw_A Proline iminopeptidase; 24.0 36 0.0012 26.6 2.0 16 34-49 63-78 (313)
5 2q3l_A Uncharacterized protein 23.7 27 0.00094 26.4 1.2 27 126-152 25-51 (126)
6 2lfc_A Fumarate reductase, fla 22.7 47 0.0016 25.9 2.5 36 114-151 90-127 (160)
7 3afi_E Haloalkane dehalogenase 20.8 36 0.0012 27.5 1.4 15 34-48 58-72 (316)
8 2wj6_A 1H-3-hydroxy-4-oxoquina 18.5 45 0.0015 26.6 1.5 15 34-48 56-70 (276)
9 3nwo_A PIP, proline iminopepti 18.3 49 0.0017 26.9 1.7 15 34-48 85-99 (330)
10 1wm1_A Proline iminopeptidase; 17.4 60 0.002 25.3 2.0 15 34-48 66-80 (317)
No 1
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=41.02 E-value=10 Score=27.62 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=24.5
Q ss_pred ceeeecCcchhHHHHHHhhhc---ccCccccccc
Q psy2911 3 KIVVKGPMNETEKFLRDFRKL---TTGKLTTAPF 33 (234)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 33 (234)
-|+|+||..+.++|-..++.+ ..+||+++|.
T Consensus 50 vivv~G~~~~I~~l~~~l~~~kGV~~~~L~~~~~ 83 (85)
T 1q5y_A 50 IAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPK 83 (85)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSTTCEEEEEEEEEC
T ss_pred EEEEEcCHHHHHHHHHHHhccCCeEEEeEEEEec
Confidence 378999999999998877765 4568887764
No 2
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=33.73 E-value=33 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=27.5
Q ss_pred cCChhhhccCChHHHHHHHHHHHHHHHhcccC
Q psy2911 122 DFPSSLISRVAPEEYQTTIEQINTVLKKTLPV 153 (234)
Q Consensus 122 EFPseL~gRVapEeFeeTI~rIN~il~kaepv 153 (234)
.-|+-..||++-|+.-++|+.||.++.+--.+
T Consensus 17 sIPkYmrGRlTle~lN~~i~~in~~~~~KY~i 48 (130)
T 2lyc_A 17 TIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKI 48 (130)
T ss_dssp TSCHHHHSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999765433
No 3
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=26.16 E-value=35 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=26.4
Q ss_pred hhhccCChHHHHHHHHHHHHHHHh--cccCC
Q psy2911 126 SLISRVAPEEYQTTIEQINTVLKK--TLPVN 154 (234)
Q Consensus 126 eL~gRVapEeFeeTI~rIN~il~k--aepvn 154 (234)
++.|+++++++++-+..|+..+++ +..++
T Consensus 25 ~~~G~lt~eD~~~l~~~i~~~l~~~~~~~i~ 55 (127)
T 2ook_A 25 KAIGTLTHEDYLVITPMLEGALSQVDQPKVS 55 (127)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred EEeeeECHHHHHHHHHHHHHHHhhccCCCEE
Confidence 478999999999999999999999 88875
No 4
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7
Probab=24.00 E-value=36 Score=26.57 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=12.9
Q ss_pred ceeccccccCCCCccc
Q psy2911 34 SFALDQFGFGTSGKVG 49 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~~ 49 (234)
-+++|++|||.|.+..
T Consensus 63 vi~~D~~G~G~S~~~~ 78 (313)
T 1azw_A 63 IVLFDQRGSGRSTPHA 78 (313)
T ss_dssp EEEECCTTSTTSBSTT
T ss_pred EEEECCCCCcCCCCCc
Confidence 4689999999997543
No 5
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=23.72 E-value=27 Score=26.43 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=25.2
Q ss_pred hhhccCChHHHHHHHHHHHHHHHhccc
Q psy2911 126 SLISRVAPEEYQTTIEQINTVLKKTLP 152 (234)
Q Consensus 126 eL~gRVapEeFeeTI~rIN~il~kaep 152 (234)
++.|+++++++++-+..|+..++++.+
T Consensus 25 ~~~G~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 25 KAVGKLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTTCCS
T ss_pred EEEeeECHHHHHHHHHHHHHHHHhCCC
Confidence 477999999999999999999999988
No 6
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=22.73 E-value=47 Score=25.90 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=26.7
Q ss_pred cccccccccCChhhhcc--CChHHHHHHHHHHHHHHHhcc
Q psy2911 114 GLSNKFETDFPSSLISR--VAPEEYQTTIEQINTVLKKTL 151 (234)
Q Consensus 114 GLs~kFetEFPseL~gR--VapEeFeeTI~rIN~il~kae 151 (234)
|+..|++| -.+|..+ |+++.+++||++-|..-+.-.
T Consensus 90 g~~~kadT--leeLA~~~gid~~~L~~TV~~yN~~~~~G~ 127 (160)
T 2lfc_A 90 RPVFVKGS--LESAAEQAGIVVDELVQTVKNYQGYVQDGH 127 (160)
T ss_dssp SCSEECSS--HHHHHHHHTCCHHHHHHHHHHHHHHHTTSC
T ss_pred CceEecCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHcCC
Confidence 44555555 4556654 899999999999999887543
No 7
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Probab=20.82 E-value=36 Score=27.53 Aligned_cols=15 Identities=53% Similarity=0.793 Sum_probs=12.9
Q ss_pred ceeccccccCCCCcc
Q psy2911 34 SFALDQFGFGTSGKV 48 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (234)
-+|+|++|||.|.+.
T Consensus 58 via~Dl~G~G~S~~~ 72 (316)
T 3afi_E 58 CIAPDLIGFGQSGKP 72 (316)
T ss_dssp EEEECCTTSTTSCCC
T ss_pred EEEECCCCCCCCCCC
Confidence 478999999999874
No 8
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Probab=18.52 E-value=45 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=12.8
Q ss_pred ceeccccccCCCCcc
Q psy2911 34 SFALDQFGFGTSGKV 48 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (234)
-.|+|++|||.|.+.
T Consensus 56 via~DlrGhG~S~~~ 70 (276)
T 2wj6_A 56 VIVPNWRGHGLSPSE 70 (276)
T ss_dssp EEEECCTTCSSSCCC
T ss_pred EEEeCCCCCCCCCCC
Confidence 478999999999864
No 9
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis}
Probab=18.25 E-value=49 Score=26.91 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.7
Q ss_pred ceeccccccCCCCcc
Q psy2911 34 SFALDQFGFGTSGKV 48 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (234)
-+++|++|||.|.+.
T Consensus 85 Via~D~rG~G~S~~~ 99 (330)
T 3nwo_A 85 VIHYDQVGCGNSTHL 99 (330)
T ss_dssp EEEECCTTSTTSCCC
T ss_pred EEEECCCCCCCCCCC
Confidence 468999999999874
No 10
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A*
Probab=17.45 E-value=60 Score=25.33 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.3
Q ss_pred ceeccccccCCCCcc
Q psy2911 34 SFALDQFGFGTSGKV 48 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (234)
-++.|++|||.|...
T Consensus 66 vi~~D~~G~G~S~~~ 80 (317)
T 1wm1_A 66 VLLFDQRGCGRSRPH 80 (317)
T ss_dssp EEEECCTTSTTCBST
T ss_pred EEEECCCCCCCCCCC
Confidence 368999999999754
Done!