Query psy2911
Match_columns 234
No_of_seqs 57 out of 59
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 20:46:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1emoa2 g.3.11.1 (A:2167-2205) 63.6 0.98 7.1E-05 28.7 0.7 19 66-84 3-21 (39)
2 d2q3la1 c.13.2.2 (A:1-125) Unc 37.3 9 0.00065 27.8 2.5 33 126-158 24-56 (125)
3 d1q5ya_ d.58.18.4 (A:) Nickel 35.2 4.5 0.00033 28.5 0.4 31 3-33 49-82 (84)
4 d1v4pa_ d.67.1.2 (A:) Hypothet 29.4 20 0.0014 26.0 3.3 30 129-158 48-77 (151)
5 d2ooka1 c.13.2.2 (A:2-126) Hyp 27.4 19 0.0014 26.0 2.8 34 126-159 23-56 (125)
6 d2b8ta1 c.37.1.24 (A:11-149) T 25.9 26 0.0019 25.5 3.4 41 1-41 1-44 (139)
7 d1mj5a_ c.69.1.8 (A:) Haloalka 22.7 15 0.0011 25.4 1.4 18 34-51 57-74 (298)
8 d1qlwa_ c.69.1.15 (A:) A novel 22.6 13 0.00096 26.9 1.1 15 34-48 95-109 (318)
9 d1mtza_ c.69.1.7 (A:) Tricorn 22.2 20 0.0015 24.8 2.0 39 6-48 31-69 (290)
10 d1xkla_ c.69.1.20 (A:) Salicyl 21.6 15 0.0011 24.6 1.2 15 34-48 32-46 (258)
11 d3c70a1 c.69.1.20 (A:2-257) Hy 20.5 16 0.0012 24.7 1.2 14 34-47 32-45 (256)
12 d1pjaa_ c.69.1.13 (A:) Palmito 20.3 14 0.001 25.2 0.8 14 34-47 34-47 (268)
13 d1mn3a_ a.5.2.4 (A:) Vacuolar 20.2 13 0.00098 24.3 0.6 25 125-149 1-25 (54)
No 1
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.60 E-value=0.98 Score=28.72 Aligned_cols=19 Identities=47% Similarity=0.948 Sum_probs=15.2
Q ss_pred eeecCCCcCCCccCCCCCh
Q psy2911 66 TCSVGEPLGTGTCPTNNSA 84 (234)
Q Consensus 66 ~~~~~~~~~~~~~~~~n~~ 84 (234)
-||+|.|-|-|||..--|.
T Consensus 3 ECsignpCGnGTCtNviGg 21 (39)
T d1emoa2 3 ECSVGNPCGNGTCKNVIGG 21 (39)
T ss_dssp GGGTTCSSSSSCEEECSSS
T ss_pred ccccCCccCCceeeecccc
Confidence 3999999999999654443
No 2
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}
Probab=37.30 E-value=9 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=28.8
Q ss_pred hhhccCChHHHHHHHHHHHHHHHhcccCCceee
Q psy2911 126 SLISRVAPEEYQTTIEQINTVLKKTLPVNAKWL 158 (234)
Q Consensus 126 eL~gRVapEeFeeTI~rIN~il~kaepvn~rw~ 158 (234)
++.|+++.++|++-+..++..++++.......+
T Consensus 24 ~~~G~lt~~D~~~~~~~l~~~l~~~~~~~v~~l 56 (125)
T d2q3la1 24 KAVGKLTHEDYEQMTPLLESALAGIKTPEIVAL 56 (125)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTTCCSSCEEEE
T ss_pred EEEeeECHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 467999999999999999999999988765554
No 3
>d1q5ya_ d.58.18.4 (A:) Nickel responsive regulator NikR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.24 E-value=4.5 Score=28.50 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=24.6
Q ss_pred ceeeecCcchhHHHHHHh---hhcccCccccccc
Q psy2911 3 KIVVKGPMNETEKFLRDF---RKLTTGKLTTAPF 33 (234)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 33 (234)
-|+|+||..+.+.|...+ |....|||++.|-
T Consensus 49 vivl~G~~~~i~~la~~l~~~kGVk~~kL~~ip~ 82 (84)
T d1q5ya_ 49 IAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPK 82 (84)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSTTCEEEEEEEEEC
T ss_pred EEEEEccHHHHHHHHHHHhccCCeEEEEEEEEec
Confidence 378999999998886554 5667899998884
No 4
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.37 E-value=20 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=26.3
Q ss_pred ccCChHHHHHHHHHHHHHHHhcccCCceee
Q psy2911 129 SRVAPEEYQTTIEQINTVLKKTLPVNAKWL 158 (234)
Q Consensus 129 gRVapEeFeeTI~rIN~il~kaepvn~rw~ 158 (234)
+++++|++++.=+.+|++.++..|+..+++
T Consensus 48 ~~~t~e~l~~iE~~~n~~I~~~~~v~~~~~ 77 (151)
T d1v4pa_ 48 RKPSDEEIREIERLANEKVKENAPIKIYEL 77 (151)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCBCEEEEE
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEe
Confidence 678899999998999999999999976554
No 5
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576 {Shewanella frigidimarina [TaxId: 56812]}
Probab=27.42 E-value=19 Score=25.98 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=28.9
Q ss_pred hhhccCChHHHHHHHHHHHHHHHhcccCCceeee
Q psy2911 126 SLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLF 159 (234)
Q Consensus 126 eL~gRVapEeFeeTI~rIN~il~kaepvn~rw~l 159 (234)
+.+|+++.++|++-+..|...++++.......++
T Consensus 23 ~~~G~lt~~D~~~~~~~le~~l~~~~~~~v~l~i 56 (125)
T d2ooka1 23 KAIGTLTHEDYLVITPMLEGALSQVDQPKVSLFL 56 (125)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHTTCCCSSCCEEE
T ss_pred EEEEEECHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 4679999999999999999999999877655553
No 6
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=25.89 E-value=26 Score=25.47 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=31.8
Q ss_pred Ccce-eeecCcc--hhHHHHHHhhhcccCcccccccceeccccc
Q psy2911 1 MGKI-VVKGPMN--ETEKFLRDFRKLTTGKLTTAPFSFALDQFG 41 (234)
Q Consensus 1 ~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (234)
||+| ++-|||+ .|.+.+|..++.........=|-.+.|.++
T Consensus 1 ~G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~ 44 (139)
T d2b8ta1 1 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS 44 (139)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGG
T ss_pred CcEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccc
Confidence 7877 4579998 478899998887765556666888999885
No 7
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]}
Probab=22.70 E-value=15 Score=25.38 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=14.6
Q ss_pred ceeccccccCCCCccccC
Q psy2911 34 SFALDQFGFGTSGKVGPL 51 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (234)
-+|+|++|||.|.+....
T Consensus 57 vi~~Dl~G~G~S~~~~~~ 74 (298)
T d1mj5a_ 57 LIACDLIGMGDSDKLDPS 74 (298)
T ss_dssp EEEECCTTSTTSCCCSSC
T ss_pred EEEEeCCCCCCCCCCccc
Confidence 578999999999876543
No 8
>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]}
Probab=22.55 E-value=13 Score=26.87 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.7
Q ss_pred ceeccccccCCCCcc
Q psy2911 34 SFALDQFGFGTSGKV 48 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (234)
-+++|++|||.|++.
T Consensus 95 V~~~D~~G~G~S~~~ 109 (318)
T d1qlwa_ 95 TYVIDQSGRGRSATD 109 (318)
T ss_dssp EEEEECTTSTTSCCC
T ss_pred EEEecCCCCCCCCCc
Confidence 478999999999864
No 9
>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=22.23 E-value=20 Score=24.82 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=22.1
Q ss_pred eecCcchhHHHHHHhhhcccCcccccccceeccccccCCCCcc
Q psy2911 6 VKGPMNETEKFLRDFRKLTTGKLTTAPFSFALDQFGFGTSGKV 48 (234)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (234)
+-|-......|...+..+..-. =--+++|.+|+|.|.+.
T Consensus 31 lHG~~g~~~~~~~~~~~~~~~~----~~vi~~D~~G~G~S~~~ 69 (290)
T d1mtza_ 31 MHGGPGMSHDYLLSLRDMTKEG----ITVLFYDQFGCGRSEEP 69 (290)
T ss_dssp ECCTTTCCSGGGGGGGGGGGGT----EEEEEECCTTSTTSCCC
T ss_pred ECCCCCchHHHHHHHHHHHHCC----CEEEEEeCCCCcccccc
Confidence 4453333444555555443211 12478999999999753
No 10
>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=21.65 E-value=15 Score=24.59 Aligned_cols=15 Identities=33% Similarity=0.177 Sum_probs=12.4
Q ss_pred ceeccccccCCCCcc
Q psy2911 34 SFALDQFGFGTSGKV 48 (234)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (234)
-+++|++|||.|.+.
T Consensus 32 vi~~Dl~G~G~S~~~ 46 (258)
T d1xkla_ 32 VTALDLAASGTDLRK 46 (258)
T ss_dssp EEECCCTTSTTCCCC
T ss_pred EEEecCCCCCCCCCC
Confidence 468999999999753
No 11
>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]}
Probab=20.51 E-value=16 Score=24.68 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=11.9
Q ss_pred ceeccccccCCCCc
Q psy2911 34 SFALDQFGFGTSGK 47 (234)
Q Consensus 34 ~~~~~~~~~~~~~~ 47 (234)
-+|+|++|||.|.+
T Consensus 32 Via~Dl~G~G~S~~ 45 (256)
T d3c70a1 32 VTALDLAASGVDPR 45 (256)
T ss_dssp EEEECCTTSTTCSC
T ss_pred EEEEcCCCCCCCCC
Confidence 36899999999975
No 12
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.35 E-value=14 Score=25.20 Aligned_cols=14 Identities=29% Similarity=0.128 Sum_probs=11.9
Q ss_pred ceeccccccCCCCc
Q psy2911 34 SFALDQFGFGTSGK 47 (234)
Q Consensus 34 ~~~~~~~~~~~~~~ 47 (234)
-.|+|++|||.|.+
T Consensus 34 v~~~d~~G~g~S~~ 47 (268)
T d1pjaa_ 34 VTVLDLFDGRESLR 47 (268)
T ss_dssp EEECCSSCSGGGGS
T ss_pred EEEeCCCCCCCCCC
Confidence 35889999999975
No 13
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.20 E-value=13 Score=24.33 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=20.4
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHh
Q psy2911 125 SSLISRVAPEEYQTTIEQINTVLKK 149 (234)
Q Consensus 125 seL~gRVapEeFeeTI~rIN~il~k 149 (234)
++|..||.++|++++++.+-..|=+
T Consensus 1 ~~~i~~i~~~e~~e~~~~Lk~MFP~ 25 (54)
T d1mn3a_ 1 SSLIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4788999999999999987665543
Done!