RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2911
         (234 letters)



>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 226

 Score = 34.3 bits (77), Expect = 0.008
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 117 NKFETDFPSSLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCCCCTLGCSLWPV 176
            ++   FP+   + +  +EY++ IE +  +L K +    K L   C     +     +  
Sbjct: 3   KEYYRVFPTY--TDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF 60

Query: 177 VC 178
             
Sbjct: 61  EV 62


>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
           {Haemophilus influenzae [TaxId: 727]}
          Length = 225

 Score = 29.0 bits (63), Expect = 0.48
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 126 SLISRVAPEEYQTTIEQINTVLKKTLPVNAKWLFCGCVCCCCTLGCSLW 174
            +I R  P  Y   I  I  + ++ +  ++     GC     TL     
Sbjct: 13  DMIQRSVPG-YSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRN 60


>d2j85a1 d.321.1.1 (A:2-116) Hypothetical protein B116 {Sulfolobus
           turreted icosahedral virus, STIV [TaxId: 269145]}
          Length = 115

 Score = 24.4 bits (53), Expect = 8.2
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 102 TKSFSTLESSEFGLSNKF----ETDFPSSLISRVAPEEY------QTTIEQINTVLKKTL 151
           T +FS     EF  +       E DF   L  R+            +TI  +NT+    L
Sbjct: 6   TNAFSINMLKEFPTTITIDKLDEEDFCLKLELRLEDGTLINAIGHDSTINLVNTLCGTQL 65

Query: 152 PVN 154
             N
Sbjct: 66  QKN 68


>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 39

 Score = 22.5 bits (48), Expect = 8.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 67 CSVGEPLGTGTC 78
          CSVG P G GTC
Sbjct: 4  CSVGNPCGNGTC 15


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 860,644
Number of extensions: 37918
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 6
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)