BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2912
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 80 VLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWD 139
++ A+ S+VFVVGL+GN+LV + R M+T TN YI NLA+AD LV + V+
Sbjct: 24 IITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVY- 82
Query: 140 VTETWFMGLVLCRVVLYSQVIFIMYLDYYN---TMIKLTNRKQSKYI 183
+ +W G VLC++VL +DYYN ++ LT +YI
Sbjct: 83 LMNSWPFGDVLCKIVL--------SIDYYNMFTSIFTLTMMSVDRYI 121
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 81 LIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDV 140
L + SI+F+ G++GN LV + + K +R++T+ Y ++L+VAD L + I LP V D
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAV-DA 108
Query: 141 TETWFMGLVLCRVV-------LYSQVIFIMY--LDYYNTMIKLTNRKQSK 181
W+ G LC+ V LYS V + + LD Y ++ TN ++ +
Sbjct: 109 VANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPR 158
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 81 LIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDV 140
L + SI+F+ G++GN LV + + K +R++T+ Y ++L+VAD L + I LP V D
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAV-DA 108
Query: 141 TETWFMGLVLCRVV-------LYSQVIFIMY--LDYYNTMIKLTNRKQSK 181
W+ G LC+ V LYS V + + LD Y ++ TN ++ +
Sbjct: 109 VANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPR 158
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 81 LIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDV 140
L + SI+F+ G++GN LV + + K +R++T+ Y ++L+VAD L + I LP V D
Sbjct: 51 LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAV-DA 108
Query: 141 TETWFMGLVLCRVV-------LYSQVIFIMY--LDYYNTMIKLTNRKQSK 181
W+ G LC+ V LYS V + + LD Y ++ TN ++ +
Sbjct: 109 VANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPR 158
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 81 LIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDV 140
++AL SIV VVGL GN LV + R M+T TN YI NLA+AD L LP V +
Sbjct: 20 IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYL 78
Query: 141 TETWFMGLVLCRVVLYSQVIFIMYLDYYN 169
TW G +LC++V+ +DYYN
Sbjct: 79 MGTWPFGNILCKIVI--------SIDYYN 99
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 83 ALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTE 142
AL S V VGL+GN LV + R ++T TN YI NLA+AD L LP + E
Sbjct: 19 ALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALAT-STLPFQSAKYLME 77
Query: 143 TWFMGLVLCRVVLYSQVIFIMYLDYYN---TMIKLTNRKQSKYI 183
TW G +LC+ VL +DYYN ++ LT +YI
Sbjct: 78 TWPFGELLCKAVL--------SIDYYNMFTSIFTLTMMSVDRYI 113
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P + ++ L V V GL+GN LV + R+ M+T TN YI NLA+AD LV+L LP
Sbjct: 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LP 179
Query: 134 PTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYN 169
+ W G LC+ V+ +DYYN
Sbjct: 180 FQGTDILLGFWPFGNALCKTVI--------AIDYYN 207
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 93 LIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVT-ETWFMGLVLC 151
+ GN LVC+AV + ++++T TNY +V+LAVAD LV + +P V +VT W + C
Sbjct: 53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICC 112
Query: 152 RV 153
V
Sbjct: 113 DV 114
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+LA AD LV ++ +P
Sbjct: 2 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIP 61
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+LA AD V ++ +P
Sbjct: 17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+LA AD V ++ +P
Sbjct: 27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+LA AD V ++ +P
Sbjct: 2 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 61
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+ A AD LV ++ +P
Sbjct: 2 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP 61
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P +T+TW
Sbjct: 190 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWT 249
Query: 146 MGLVLCR 152
G C
Sbjct: 250 FGNFWCE 256
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 80 VLIALQSIVFV-VGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVW 138
+++ L +I V VGL N LV AV + + TV N YIV+L+VAD +V + +P +++
Sbjct: 11 LVVVLSTICLVTVGL--NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILY 68
Query: 139 DVTETWFMGLVLCRVVLYSQVIFIMYLDY 167
+ W +G LC +F + +DY
Sbjct: 69 LLMSKWSLGRPLC--------LFWLSMDY 89
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 80 VLIA-LQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVW 138
V IA L + +V +IGN LV +A NK ++TV NY++++LA AD ++ +I + +
Sbjct: 13 VFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTY 72
Query: 139 DVTETWFMGLVLCRVVL 155
+ W +G + C + L
Sbjct: 73 IIMNRWALGNLACDLWL 89
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P +T+TW
Sbjct: 13 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWT 72
Query: 146 MGLVLCR 152
G C
Sbjct: 73 FGNFWCE 79
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 84 LQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTET 143
L ++V ++ + GN LV A+ + ++T+TN +I +LA AD +V L+ +P V T
Sbjct: 17 LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76
Query: 144 WFMGLVLCRV 153
W G LC +
Sbjct: 77 WLWGSFLCEL 86
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 84 LQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTET 143
L ++V ++ + GN LV A+ + ++T+TN +I +LA AD +V L+ +P V T
Sbjct: 17 LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76
Query: 144 WFMGLVLCRV 153
W G LC +
Sbjct: 77 WLWGSFLCEL 86
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%)
Query: 90 VVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLV 149
+V +IGN LV +++ N+ ++TV NY++ +LA AD ++ + + ++ V W +G V
Sbjct: 35 LVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 150 LCRVVL 155
+C + L
Sbjct: 95 VCDLWL 100
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 49 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT 108
Query: 146 MGLVLCR 152
G C
Sbjct: 109 FGNFWCE 115
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 48 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT 107
Query: 146 MGLVLCR 152
G C
Sbjct: 108 FGNFWCE 114
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 42 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT 101
Query: 146 MGLVLCR 152
G C
Sbjct: 102 FGNFWCE 108
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 41 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT 100
Query: 146 MGLVLCR 152
G C
Sbjct: 101 FGNFWCE 107
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 49 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT 108
Query: 146 MGLVLCR 152
G C
Sbjct: 109 FGNFWCE 115
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 18 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWT 77
Query: 146 MGLVLCR 152
G C
Sbjct: 78 FGNFWCE 84
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWF 145
S++ + + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P + + W
Sbjct: 17 SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWT 76
Query: 146 MGLVLCR 152
G C
Sbjct: 77 FGNFWCE 83
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 106 NKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCR 152
+K MRTVTNY++VNLA A+ + + V W+ GL C+
Sbjct: 60 HKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCK 106
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVY---RNKSMRTVTNYYIVNLAVADFLVIL 129
+ W L + +F++ ++G + + +Y ++K +RT NY ++NLAVAD ++
Sbjct: 33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVY---RNKSMRTVTNYYIVNLAVADFLVIL 129
+ W L + +F++ ++G + + +Y ++K +RT NY ++NLAVAD ++
Sbjct: 32 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 88
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVY---RNKSMRTVTNYYIVNLAVADFLVIL 129
+ W L + +F++ ++G + + +Y ++K +RT NY ++NLAVAD ++
Sbjct: 33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVY---RNKSMRTVTNYYIVNLAVADFLVIL 129
+ W L + +F++ ++G + + +Y ++K +RT NY ++NLAVAD ++
Sbjct: 33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVY---RNKSMRTVTNYYIVNLAVADFLVIL 129
+ W L + +F++ ++G + + +Y ++K +RT NY ++NLAVAD ++
Sbjct: 32 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 88
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVY---RNKSMRTVTNYYIVNLAVADFLVIL 129
+ W L + +F++ ++G + + +Y ++K +RT NY ++NLAVAD ++
Sbjct: 33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 105 RNKSMRTVTNYYIVNLAVADFLVILI-CLPPTVVWDVTETWFMGLVLCRVVLYSQVIF 161
+ KS++T N +I+NLA +DF L+ P + + W G C+V + IF
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 118
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 105 RNKSMRTVTNYYIVNLAVADFLVILI-CLPPTVVWDVTETWFMGLVLCRVVLYSQVIF 161
+ KS++T N +I+NLA +DF L+ P + + W G C+V + IF
Sbjct: 60 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 117
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 24/166 (14%)
Query: 75 TSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPP 134
T +++V+I ++VF++ L+GN+LV + + ++ R+VT+ Y++NLA+AD L L
Sbjct: 8 TLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT---- 63
Query: 135 TVVWDVTET--WFMGLVLCRVV-------LYSQVIFI--MYLDYYNTMIKLTNRKQSKYI 183
+W ++ W G LC+VV YS ++ + + +D Y ++ T
Sbjct: 64 LPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATR----TLT 119
Query: 184 HKKTIGTFLCKEESFLTTGISLYPKSSYYMSKKQGRKSASIPTQCY 229
K+ + F+C L+ +SL +++ ++ + S P CY
Sbjct: 120 QKRHLVKFVCLGCWGLSMNLSL----PFFLFRQAYHPNNSSPV-CY 160
>pdb|3KLY|A Chain A, Pentameric Formate Channel
pdb|3KLY|B Chain B, Pentameric Formate Channel
pdb|3KLY|C Chain C, Pentameric Formate Channel
pdb|3KLY|D Chain D, Pentameric Formate Channel
pdb|3KLY|E Chain E, Pentameric Formate Channel
pdb|3KLZ|A Chain A, Pentameric Formate Channel With Formate Bound
pdb|3KLZ|B Chain B, Pentameric Formate Channel With Formate Bound
pdb|3KLZ|C Chain C, Pentameric Formate Channel With Formate Bound
pdb|3KLZ|D Chain D, Pentameric Formate Channel With Formate Bound
pdb|3KLZ|E Chain E, Pentameric Formate Channel With Formate Bound
Length = 280
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 89 FVVGLIGNALVCIAVYRNKSMRTVTNYYIV 118
F +GL+ N LVC+AV+ S R++T+ +V
Sbjct: 164 FALGLMCNILVCLAVWMTFSARSLTDKVMV 193
>pdb|2LOT|A Chain A, Ar55 Solubilised In Sds Micelles
pdb|2LOU|A Chain A, Ar55 Solubilised In Dpc Micelles
pdb|2LOV|A Chain A, Ar55 Solubilised In Lppg Micelles
pdb|2LOW|A Chain A, Solution Structure Of Ar55 In 50% Hfip
Length = 64
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 76 SSEWVLIALQSIVFVVGLIGNALVCIAVYRNK 107
SS ++ A+ +VF++G GN LV V+R K
Sbjct: 26 SSGALIPAIYMLVFLLGTTGNGLVLWTVFRKK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,709,997
Number of Sequences: 62578
Number of extensions: 188968
Number of successful extensions: 288
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 41
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)