RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2912
(232 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 72.3 bits (178), Expect = 3e-15
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 101 IAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVI 160
+ + R K +RT TN +++NLAVAD L +L P + + V W G LC++V + V+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 161 F 161
Sbjct: 61 N 61
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 46.3 bits (110), Expect = 4e-06
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 59 EEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIV 118
E+Y D I T LI + S +F GL+GN +V + + K +T + Y++
Sbjct: 25 EDYADCDLNIGYDTNSTI----LIVVYSTIFFFGLVGNIIVIYVLTKTKI-KTPMDIYLL 79
Query: 119 NLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRK 178
NLAV+D L ++ LP + + + W G C++ V + Y+ +YN+M +T
Sbjct: 80 NLAVSDLLFVMT-LPFQIYYYILFQWSFGEFACKI-----VSGLYYIGFYNSMNFITVMS 133
Query: 179 QSKYI 183
+YI
Sbjct: 134 VDRYI 138
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 45.8 bits (108), Expect = 9e-06
Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 11 VISLLLINFTTETDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIE 70
+IS TE ++ + + +++ +S+ + T N+T E I+ +
Sbjct: 36 IISTFTEIIPTEIPTSESPSPNSNSSSSSSSSSSSITYDYEYENNITYE----LINIKNK 91
Query: 71 YVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILI 130
+ P+ SE++ I I+F++GL GNA + I + K ++T+T+ YI NLA++D +I +
Sbjct: 92 CMYPSISEYIKI-FYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISD--LIFV 147
Query: 131 CLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKY 182
P ++++ + W G +C+V+ S Y+ +++ M +T +Y
Sbjct: 148 IDFPFIIYNEFDQWIFGDFMCKVISAS-----YYIGFFSNMFLITLMSIDRY 194
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 37.2 bits (86), Expect = 0.004
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 79 WVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVW 138
+ +I ++F+ GLIGN LV IAV K V + Y+ N+A++D +++ P ++
Sbjct: 29 YFVIVFYILLFIFGLIGNVLV-IAVLIVKRFMFVVDVYLFNIAMSDLMLVFSF--PFIIH 85
Query: 139 DVTETWFMGLVLCRVVL-------YSQVIFIMY--LDYYNTMIKLTNRK 178
+ W G +C++VL +S + F+ +D Y ++ T K
Sbjct: 86 NDLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIK 134
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 34.1 bits (79), Expect = 0.034
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 89 FVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVIL 129
V+G+ GN ++ I ++ K +R+ +Y I +AD L +
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41
>gnl|CDD|153128 cd02437, CCC1_like_1, CCC1-related protein family. CCC1_like_1:
This is a protein family closely related to CCC1, a
family of proteins involved in iron and manganese
transport. Yeast CCC1 is a vacuole transmembrane protein
responsible for the iron and manganese accumulation in
vacuole. .
Length = 175
Score = 28.5 bits (64), Expect = 2.2
Identities = 5/50 (10%), Positives = 11/50 (22%)
Query: 87 IVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTV 136
V ++ L + + K + V I +
Sbjct: 124 AGIAVAIVLAILFILGLVIGKISKINVAISFVWAVGMVITGISLVFSVGK 173
>gnl|CDD|131894 TIGR02847, CyoD, cytochrome o ubiquinol oxidase subunit IV.
Cytochrome o terminal oxidase complex is the component
of the aerobic respiratory chain which reacts with
oxygen, reducing it to water with the concomitant
transport of 4 protons across the membrane. Also known
as the cytochrome bo complex, cytochrome o ubiquinol
oxidase contains four subunits, two heme b cofactors and
a copper atom which is believed to be the oxygen active
site. This complex is structurally related to the
cytochrome caa3 oxidases which utilize cytochrome c as
the reductant and contain heme a cofactors, as well as
the intermediate form aa3 oxidases which also react
directly with quinones as the reductant [Energy
metabolism, Electron transport].
Length = 96
Score = 27.2 bits (61), Expect = 2.7
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 110 RTVTNYYIVNLAVADFLVILICL-----PPTVVWDVTETWFMGLVLCRVVLYSQVIFIMY 164
+ +T I+ LAV LV L+ W++ F L++ ++ S I+IM+
Sbjct: 32 KGLTLVIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFILIGGS--IWIMH 89
Query: 165 LDYYNTM 171
+N M
Sbjct: 90 NLNHNMM 96
>gnl|CDD|218853 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
This family of proteins are transient receptor potential
(TRP) ion channels. They are essential for cellular
viability and are involved in cell growth and cell wall
synthesis. The genes for these proteins are homologous
to polycystic kidney disease related ion channel genes.
Length = 531
Score = 28.3 bits (64), Expect = 3.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 79 WVLIALQSIVFVVGLIGNALVCI-AVYRNKS 108
V+ + + V + LI A+ I A++R
Sbjct: 482 VVIFVINAAVALFLLILIAINTIIALFRKNP 512
>gnl|CDD|112433 pfam03615, GCM, GCM motif protein.
Length = 143
Score = 27.4 bits (61), Expect = 4.2
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 175 TNRKQSKYIHKKTIGTFLCKEESFLTTG--ISLYPKSSYYMSKKQGRKS 221
TN + K +G +C + L G I+L P +KQ K
Sbjct: 36 TNNHNVNILKKSCLGVLVCSRDCKLPNGSKINLRPAICDKARRKQQGKQ 84
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar
to plant peroxidases. Along with animal peroxidases,
these enzymes belong to a group of peroxidases
containing a heme prosthetic group (ferriprotoporphyrin
IX), which catalyzes a multistep oxidative reaction
involving hydrogen peroxide as the electron acceptor.
The plant peroxidase-like superfamily is found in all
three kingdoms of life and carries out a variety of
biosynthetic and degradative functions. Several
sub-families can be identified. Class I includes
intracellular peroxidases present in fungi, plants,
archaea and bacteria, called catalase-peroxidases, that
can exhibit both catalase and broad-spectrum peroxidase
activities depending on the steady-state concentration
of hydrogen peroxide. Catalase-peroxidases are typically
comprised of two homologous domains that probably arose
via a single gene duplication event. Class II includes
ligninase and other extracellular fungal peroxidases,
while class III is comprised of classic extracellular
plant peroxidases, like horseradish peroxidase.
Length = 255
Score = 27.5 bits (61), Expect = 5.2
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 14/79 (17%)
Query: 108 SMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLV----------LCRVVLYS 157
+ T N Y NL + + D + + V Y+
Sbjct: 181 TPFTFDNAYFKNLLDMN----WEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYA 236
Query: 158 QVIFIMYLDYYNTMIKLTN 176
+ D+ IK+ N
Sbjct: 237 SDQEKFFEDFAKAWIKMVN 255
>gnl|CDD|151587 pfam11143, DUF2919, Protein of unknown function (DUF2919). This
bacterial family of proteins has no known function. Some
members are annotated as YfeZ however this cannot be
confirmed.
Length = 149
Score = 27.2 bits (61), Expect = 5.5
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 79 WVLIALQSIVFVVGLI----GNALVCIAVYRNKSMRTVTNYYIVNLA--VADFLVILICL 132
+ +A +VF++ G+AL+ + Y +KS + + LA V L+ L+
Sbjct: 22 LLFLARAWVVFIMAGASRQDGSALLSL-FYPDKSD------FYLGLAAGVPALLLFLLIG 74
Query: 133 PPTVVWDVTETWF----MGLVLCRVVLYSQVIFIMYLDYY 168
D + L+L VV +++ +YL +
Sbjct: 75 RRHRSPDWLRRLWRYLRWLLLLLLVVDLVLLLYRLYLQHG 114
>gnl|CDD|227407 COG5075, COG5075, Uncharacterized conserved protein [Function
unknown].
Length = 305
Score = 27.5 bits (61), Expect = 6.0
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 50 CMQIKNMTCEEYEDYIDEIIEYVKPTSSE---WVLIAL 84
C Q ++ E E Y+D + +++ WV L
Sbjct: 111 CSQKRHYVRETPEMYLDIVKPFIQEMRGSRWKWVNNIL 148
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 89 FVVGLIG---NALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICL 132
F++ L G N L+ + S++ N A+++ ++ I L
Sbjct: 1 FLISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFL 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.395
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,210,733
Number of extensions: 1030117
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 38
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)