RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2912
(232 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 118 bits (298), Expect = 5e-32
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 70 EYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVIL 129
++V+P + A +++ V ++GN +V + +K MRTVTNY++VNLA A+ +
Sbjct: 24 QFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA 83
Query: 130 ICLPPTVVWDVTETWFMGLVLCRVVLYSQVI 160
+ V W+ GL C+ + +
Sbjct: 84 FNTVVNFTYAVHNEWYYGLFYCKFHNFFPIA 114
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 116 bits (293), Expect = 9e-31
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 23 TDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLI 82
+ + + N + E + YI + + P + ++
Sbjct: 80 GQIDDALKLANEGKVKEAQAAAEQLKTT----------RNAYIQKYLGAFLPLGLKVTIV 129
Query: 83 ALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTE 142
L V V GL+GN LV + R+ M+T TN YI NLA+AD LV L+ LP +
Sbjct: 130 GLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLG 188
Query: 143 TWFMGLVLCRVVLYSQVI 160
W G LC+ V+
Sbjct: 189 FWPFGNALCKTVIAIDYY 206
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 100 bits (251), Expect = 5e-25
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+LA AD V ++ +P
Sbjct: 27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86
Query: 134 PTVVWDVTETWFMGLVLCRVVLYSQVIF 161
+ ++ + C + ++
Sbjct: 87 FAIT--ISTGFCAACHGCLFIACFVLVL 112
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 97.1 bits (241), Expect = 1e-23
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
P V I ++ + V+ ++GN LVC AV+ N +++ VTNY++V+LA AD V ++ +P
Sbjct: 17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76
Query: 134 PTVVWDVTETWFMGLVLCRVVLYSQVIF 161
+ ++ + C + ++
Sbjct: 77 FAIT--ISTGFCAACHGCLFIACFVLVL 102
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 94.4 bits (234), Expect = 1e-22
Identities = 21/82 (25%), Positives = 46/82 (56%)
Query: 80 VLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWD 139
++ + + +V +IGN LV +++ N+ ++TV NY++ +LA AD ++ + + ++
Sbjct: 25 FIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYT 84
Query: 140 VTETWFMGLVLCRVVLYSQVIF 161
V W +G V+C + L +
Sbjct: 85 VIGYWPLGPVVCDLWLALDYVV 106
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 92.5 bits (230), Expect = 2e-22
Identities = 20/93 (21%), Positives = 39/93 (41%)
Query: 71 YVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILI 130
Y+ +L A ++ ++G N L ++K +RT NY ++NLAVAD ++
Sbjct: 31 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
Query: 131 CLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIM 163
T+ + + G C + + +
Sbjct: 91 GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGE 123
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 93.2 bits (231), Expect = 4e-22
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 45 NDTDACMQIKN----MTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVC 100
D DA Q N + D + + + + S++ + + GN LV
Sbjct: 3 KDDDAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVI 62
Query: 101 IAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVL 155
A+ + + ++TVTNY+I +LA AD ++ L +P + + W G C
Sbjct: 63 TAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 117
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 92.1 bits (228), Expect = 8e-22
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 75 TSSEWVLIA-LQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
S + + + + S + +V + N LV AV + + TV N YIV+L+VAD +V + +P
Sbjct: 4 ASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP 63
Query: 134 PTVVWDVTETWFMGLVLCRVVL 155
+++ + W +G LC L
Sbjct: 64 MNILYLLMSKWSLGRPLCLFWL 85
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 90.4 bits (224), Expect = 3e-21
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 79 WVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVW 138
++AL SIV VVGL GN LV + R M+T TN YI NLA+AD L LP V
Sbjct: 18 ITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPFQSVN 76
Query: 139 DVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLT 175
+ TW G +LC++V+ I Y + + ++ L
Sbjct: 77 YLMGTWPFGNILCKIVIS-----IDYYNMFTSIFTLC 108
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 90.4 bits (224), Expect = 4e-21
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 30 NVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVF 89
V + + + + T + Y + + S++
Sbjct: 144 AVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAA----------DEVWVVGMGIVMSLIV 193
Query: 90 VVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLV 149
+ + GN LV A+ + + ++TVTNY+I +LA AD ++ L +P +T+TW G
Sbjct: 194 LAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNF 253
Query: 150 LCRVVLYSQVIF 161
C V+
Sbjct: 254 WCEFWTSIDVLC 265
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 87.1 bits (215), Expect = 5e-20
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 80 VLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWD 139
+ + + GN LVC+AV + ++++T TNY +V+LAVAD LV + +P V +
Sbjct: 40 YYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLE 99
Query: 140 VT-ETWFMGLVLCRVVLYSQVIF 161
VT W + C V + V+
Sbjct: 100 VTGGVWNFSRICCDVFVTLDVMM 122
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 85.2 bits (211), Expect = 8e-20
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 74 PTSSEW--VLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILIC 131
S +W + L ++V ++ + GN LV A+ + ++T+TN +I +LA AD +V L+
Sbjct: 5 LLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLV 64
Query: 132 LPPTVVWDVTETWFMGLVLCRV 153
+P V TW G LC +
Sbjct: 65 VPFGATLVVRGTWLWGSFLCEL 86
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 83.8 bits (207), Expect = 7e-19
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 46 DTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSE------------WVLIALQSIVFVVGL 93
D D + ++ ++Y +E+ + E L + SI+F+ G+
Sbjct: 4 DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 94 IGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRV 153
+GN LV + + K +R++T+ Y ++L+VAD L +I LP V D W+ G LC+
Sbjct: 64 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAV-DAVANWYFGNFLCKA 121
Query: 154 V-------LYSQVIFIM 163
V LYS V +
Sbjct: 122 VHVIYTVNLYSSVWILA 138
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 78.8 bits (194), Expect = 3e-17
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 86 SIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLV-ILICLPPTVVWDVTETW 144
I ++G GN +V + KS++T N +I+NLA +DF ++ P + + W
Sbjct: 42 GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKW 101
Query: 145 FMGLVLCRVVLYSQVIF---------IMYLDYYNTMIK 173
G C+V + IF ++ +D YN + +
Sbjct: 102 IFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGR 139
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 78.0 bits (191), Expect = 7e-17
Identities = 15/116 (12%), Positives = 40/116 (34%), Gaps = 19/116 (16%)
Query: 74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
+S + + ++ ++ N V + +++ K Y+I NLA++D L +
Sbjct: 59 KENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTA 118
Query: 134 PTVVWDVTETWFMGLVLCRVVLYSQVIF------------------IMYLDYYNTM 171
++ T T+ + + S + ++ + +N
Sbjct: 119 NLLLSGAT-TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGS 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.12
Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 62/194 (31%)
Query: 30 NVTNSTGIFEG-----NSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIAL 84
N +++ F ++T+ T + E E +K LI
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQF-TQPAL----TLME----KA--AFEDLK----SKGLI-- 1753
Query: 85 QSIVFVVGL-IG--NALVCIA-----------V-YRNKSMRTV--------TNYYIVNLA 121
+ G +G AL +A V YR +M+ +NY ++ A
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI--A 1811
Query: 122 VADFLVILICLPPTVVWDVTETWFMGLVLCRVVLY----SQVI----------FIMYLDY 167
+ V + + V L +V Y Q + L++
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 168 YNTM-IKLTNRKQS 180
I + ++S
Sbjct: 1872 IKLQKIDIIELQKS 1885
Score = 30.4 bits (68), Expect = 0.56
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 21/78 (26%)
Query: 39 EGNSTENDTDACM-QIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIAL----QSIVFVVG- 92
EG + M I N+T E+ +DY+++ ++ + V I+L +++V V G
Sbjct: 332 EGVPS------PMLSISNLTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNLV-VSGP 382
Query: 93 ---LIGNALVCIAVYRNK 107
L G + + + + K
Sbjct: 383 PQSLYG---LNLTLRKAK 397
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.33
Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 59/208 (28%)
Query: 53 IKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTV 112
+ N C++ +D I+ + E + I+ + L +K V
Sbjct: 30 VDNFDCKDVQDMPKSIL-----SKEE-----IDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 113 ---------TNYYIVNLAVADFLVILI---CLPPTVVWDVTETWFMGLVLCRVVLYSQV- 159
NY FL+ I P+++ + R LY+
Sbjct: 80 QKFVEEVLRINY--------KFLMSPIKTEQRQPSMMTRMYIE-------QRDRLYNDNQ 124
Query: 160 IFIMY----LDYYNTMIK-LTNRKQSKYI--H------KKTIGTFLCKEESFLTTGISLY 206
+F Y L Y + + L + +K + K + +C
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK----M 180
Query: 207 PKSSYYMSKKQGRKSASIPTQ----CYR 230
++++ K ++ Y+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 31.0 bits (70), Expect = 0.34
Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 79 WVLIALQSIVFVVGLIGNALVCIAV--YRNKSMRTVTNYY------------IVNLAVAD 124
+ +AL +++ L ++ I K + IV L +
Sbjct: 368 LIALALTVVIY---LCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSI 424
Query: 125 FLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDY 167
I+ LPP + + ++ L++ ++ + FI+Y +
Sbjct: 425 MAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILYAVH 467
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell
inner membrane, cell membrane, membrane, transmembrane;
HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A
3q7k_A
Length = 285
Score = 26.4 bits (58), Expect = 9.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 88 VFVVGLIGNALVCIAVYRNKSMRTVT 113
+G++ N +VC+AV+ + S R++
Sbjct: 164 AVCLGILANLMVCLAVWMSYSGRSLM 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.395
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,339,803
Number of extensions: 184936
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 25
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)