RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2912
         (232 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 72.7 bits (177), Expect = 1e-15
 Identities = 20/86 (23%), Positives = 38/86 (44%)

Query: 71  YVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILI 130
           Y+       +L A   ++ ++G   N L      ++K +RT  NY ++NLAVAD  ++  
Sbjct: 30  YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89

Query: 131 CLPPTVVWDVTETWFMGLVLCRVVLY 156
               T+   +   +  G   C +  +
Sbjct: 90  GFTTTLYTSLHGYFVFGPTGCNLEGF 115


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 29.0 bits (65), Expect = 0.48
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 54  KNMTCEEYEDYIDEIIEYVKPTSSEWVLI 82
           K    ++Y+D IDE ++ +        LI
Sbjct: 204 KRDRTQQYDDLIDEFMKAITDRYGRNTLI 232


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 28.9 bits (65), Expect = 0.49
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 54  KNMTCEEYEDYIDEIIEYVKPTSSEWVLI 82
           K +  + Y+D +DE +E V        LI
Sbjct: 202 KRIRGQAYDDLLDEFMEAVTSRYGMNCLI 230


>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score = 27.8 bits (62), Expect = 1.1
 Identities = 4/29 (13%), Positives = 12/29 (41%)

Query: 59  EEYEDYIDEIIEYVKPTSSEWVLIALQSI 87
           ++Y+  +D  ++       +  LI  +  
Sbjct: 244 KDYDTLLDNFMKACTKKYGQKTLIQFEDF 272


>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 170

 Score = 25.2 bits (55), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 59  EEYEDYIDEIIEYVK 73
           EE  + ++EIIEYV+
Sbjct: 145 EELAEALEEIIEYVR 159


>d1y9wa1 d.108.1.1 (A:1-140) Probable acetyltransferase BC2806
           {Bacillus cereus [TaxId: 1396]}
          Length = 140

 Score = 25.2 bits (54), Expect = 5.4
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 51  MQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMR 110
             I+N T  E E   +++I+Y     ++ V   ++ +  VV      +            
Sbjct: 4   KHIENGTRIEGEYIKNKVIQYNMSILTDEVKQPMEEVSLVVKNEEGKIFGGVTGTMYFYH 63

Query: 111 TVTNYYIVNLAVA 123
                +I  L V 
Sbjct: 64  ----LHIDFLWVD 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 823,640
Number of extensions: 36253
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 9
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)