BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2914
         (158 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
 pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
           Bst-2TETHERINCD317 FUSED To Mbp
          Length = 471

 Score = 26.9 bits (58), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 55  LRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLS 88
           L++EL +AQ+  Q + +Q  T +H V A   SL 
Sbjct: 402 LQQELTEAQKGFQDVEAQAATANHTVXALXASLD 435


>pdb|3MQC|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
          (P21)
 pdb|3MQC|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
          (P21)
 pdb|3MQC|C Chain C, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
          (P21)
 pdb|3MQC|D Chain D, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
          (P21)
          Length = 121

 Score = 26.2 bits (56), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 55 LRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSL 87
          L++EL +AQ+  Q + +Q  T +H V A   SL
Sbjct: 30 LQQELTEAQKGFQDVEAQAATCNHTVXALXASL 62


>pdb|3MQ7|A Chain A, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|B Chain B, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|C Chain C, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|D Chain D, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|E Chain E, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|F Chain F, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|G Chain G, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|H Chain H, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|I Chain I, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|J Chain J, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|K Chain K, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
 pdb|3MQ7|L Chain L, Crystal Structure Of Ectodomain Mutant Of
          Bst-2TETHERINCD317
          Length = 121

 Score = 26.2 bits (56), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 55 LRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSL 87
          L++EL +AQ+  Q + +Q  T +H V A   SL
Sbjct: 30 LQQELTEAQKGFQDVEAQAATANHTVXALXASL 62


>pdb|3NWH|A Chain A, Crystal Structure Of Bst2TETHERIN
 pdb|3NWH|B Chain B, Crystal Structure Of Bst2TETHERIN
 pdb|3NWH|C Chain C, Crystal Structure Of Bst2TETHERIN
 pdb|3NWH|D Chain D, Crystal Structure Of Bst2TETHERIN
          Length = 112

 Score = 25.8 bits (55), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 55 LRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLS 88
          L++EL +AQ+  Q + +Q  T +H V A   SL 
Sbjct: 30 LQQELTEAQKGFQDVEAQAATCNHTVXALXASLD 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.304    0.116    0.294 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,360,236
Number of Sequences: 62578
Number of extensions: 90139
Number of successful extensions: 229
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 14
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.7 bits)