BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2914
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster GN=sick PE=1 SV=3
Length = 2197
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 70/83 (84%)
Query: 22 KDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVS 81
K+++VHGSA SL S SS+Y EERQ++E+R+L+REL DA+++V +LSSQL+TN+HVV+
Sbjct: 1243 KNDEVHGSAASLLSGGSSLYGNAEERQAHEIRRLKRELQDARDQVLSLSSQLSTNAHVVT 1302
Query: 82 AFEQSLSNMTQRLQQLTVSAEEK 104
AFEQSLSNMT RL QLT +AE K
Sbjct: 1303 AFEQSLSNMTNRLHQLTATAERK 1325
>sp|Q80TN7|NAV3_MOUSE Neuron navigator 3 OS=Mus musculus GN=Nav3 PE=1 SV=2
Length = 2359
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Query: 24 EDVHGSAMSLASVSSSIYSTPEER-QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSA 82
E+VHGS++SL S +SS+YST EE+ S ++ KLRRELV +QEKV TL+SQL+ N+H+V+A
Sbjct: 1545 EEVHGSSLSLVSSTSSLYSTAEEKAHSEQIHKLRRELVASQEKVATLTSQLSANAHLVAA 1604
Query: 83 FEQSLSNMTQRLQQLTVSAEEK 104
FE+SL NMT RLQ LT++AE+K
Sbjct: 1605 FEKSLGNMTGRLQSLTMTAEQK 1626
>sp|Q8IVL1|NAV2_HUMAN Neuron navigator 2 OS=Homo sapiens GN=NAV2 PE=1 SV=3
Length = 2488
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 66/81 (81%)
Query: 24 EDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAF 83
E VHGS++SL S +SS+YSTPEE+ E+RKLRREL +QEKV L++QL N+H+V+AF
Sbjct: 1665 ELVHGSSLSLVSSTSSVYSTPEEKCQSEIRKLRRELDASQEKVSALTTQLTANAHLVAAF 1724
Query: 84 EQSLSNMTQRLQQLTVSAEEK 104
EQSL NMT RLQ LT++AE+K
Sbjct: 1725 EQSLGNMTIRLQSLTMTAEQK 1745
>sp|Q8IVL0|NAV3_HUMAN Neuron navigator 3 OS=Homo sapiens GN=NAV3 PE=1 SV=3
Length = 2385
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Query: 24 EDVHGSAMSLASVSSSIYSTPEER-QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSA 82
E+VHGS++SL S +SS+YST EE+ S ++ KLRRELV +QEKV TL+SQL+ N+H+V+A
Sbjct: 1542 EEVHGSSLSLVSSTSSLYSTAEEKAHSEQIHKLRRELVASQEKVATLTSQLSANAHLVAA 1601
Query: 83 FEQSLSNMTQRLQQLTVSAEEK 104
FE+SL NMT RLQ LT++AE+K
Sbjct: 1602 FEKSLGNMTGRLQSLTMTAEQK 1623
>sp|Q8NEY1|NAV1_HUMAN Neuron navigator 1 OS=Homo sapiens GN=NAV1 PE=1 SV=2
Length = 1877
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 24 EDVHGSAMSLASVSSSIYSTPEER-QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSA 82
+DVHGS +SLAS +SS YS+ EER QS ++RKLRREL +QEKV TL+SQL+ N+++V+A
Sbjct: 1054 DDVHGSVLSLASSASSTYSSAEERMQSEQIRKLRRELESSQEKVATLTSQLSANANLVAA 1113
Query: 83 FEQSLSNMTQRLQQLTVSAEEK 104
FEQSL NMT RL+ L +AEEK
Sbjct: 1114 FEQSLVNMTSRLRHLAETAEEK 1135
>sp|Q8CH77|NAV1_MOUSE Neuron navigator 1 OS=Mus musculus GN=Nav1 PE=1 SV=2
Length = 1875
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 24 EDVHGSAMSLASVSSSIYSTPEER-QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSA 82
+DVHGS +SLAS +SS YS+ EER QS ++RKLRREL +QEKV TL+SQL+ N+++V+A
Sbjct: 1052 DDVHGSVLSLASSASSTYSSAEERMQSEQIRKLRRELESSQEKVATLTSQLSANANLVAA 1111
Query: 83 FEQSLSNMTQRLQQLTVSAEEK 104
FEQSL NMT RL+ L +AEEK
Sbjct: 1112 FEQSLVNMTSRLRHLAETAEEK 1133
>sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio GN=nav3 PE=2 SV=1
Length = 2269
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 47/54 (87%)
Query: 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104
++RKLRREL +QEKV TL+SQL N+H+V+AFE+SL+NMT RLQ LT++AE+K
Sbjct: 1505 QIRKLRRELDASQEKVATLTSQLAANAHLVAAFEKSLANMTCRLQSLTMTAEQK 1558
>sp|Q7YSI9|UNC53_CAEEL Adapter protein unc-53 OS=Caenorhabditis elegans GN=unc-53 PE=1 SV=1
Length = 1654
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 28 GSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSL 87
GS +SLAS ++ Y + E+ + +R + R+L + V +L+ + + FEQ L
Sbjct: 948 GSQLSLASTTA--YGSLNEKYEHAIRDMARDLECYKNTVDSLTKKQENYGALFDLFEQKL 1005
Query: 88 SNMTQRLQQLTVSAEEKLR 106
+TQ + + + EE +R
Sbjct: 1006 RKLTQHIDRSNLKPEEAIR 1024
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 39 SIYSTPEERQSYELRKLRRELVDAQEKVQTLSS----------QLNTNSHVVSAFEQSLS 88
++ EE YE + L+REL+ AQE+V+ + S +++N+ +V QS S
Sbjct: 37 DFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDSNTGIV----QSTS 92
Query: 89 NMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAP--KPSESTG 146
T ++ L+ E L+ S S A R + + L ++SS L KPSES
Sbjct: 93 GSTLCVRILSTIDRELLKPSASVALQRHSNALVDT--LPPESDSSIHLLGADEKPSESYS 150
Query: 147 DANG 150
D G
Sbjct: 151 DIGG 154
>sp|Q29N70|COG3_DROPS Conserved oligomeric Golgi complex subunit 3 OS=Drosophila
pseudoobscura pseudoobscura GN=Cog3 PE=3 SV=1
Length = 914
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 58 ELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVS-AEEKLRSSFSKAFSRI 116
+L+D QEK+Q LS+++ H S E + QRLQ T+S A E R +K
Sbjct: 167 QLIDEQEKLQDLSNEIQRRLHYFSQVEL----LNQRLQSPTLSVASEAFRECLNK-IDEC 221
Query: 117 VQIALKSPRLQEAANSSSK 135
+ ++P+ ++AA + K
Sbjct: 222 LNYIEENPKFKDAATYNVK 240
>sp|P23052|SPIKE_BEV Spike glycoprotein OS=Berne virus GN=S PE=2 SV=1
Length = 1581
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 16 LSKVNSKDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLR--------RELVDAQEK-V 66
LSK+ S V S +S+AS+ SI+S E+R+ EL + + L D EK
Sbjct: 1104 LSKIGS----VLSSGLSIASLGLSIFSIVEDRRVTELTQQQIMALEDQITILTDYTEKNF 1159
Query: 67 QTLSSQLNTNSHVVSAFEQ----SLSNMTQRLQQLT---------VSAEEKLRSSFSKAF 113
+ + S LNT V F Q SL ++ L+Q+T V+A ++ + S
Sbjct: 1160 KEIQSSLNTLGQQVQDFSQQVTMSLQQLSNGLEQITQQLDKSIYYVTATQQYATYMSSLI 1219
Query: 114 SRIVQIALKSPRLQE 128
+ + ++A + Q+
Sbjct: 1220 NHLTELAAAVYKTQD 1234
>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2
Length = 1798
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 37 SSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQL------NTNS-HVVSAFEQSLSN 89
++S ST + ++ E +LRRE+ +A E + L + L N N+ H +S E+
Sbjct: 1249 NTSAASTAQLVEATE--ELRREIGEATEHLTQLEADLTDVQDENFNANHALSGLERDRLA 1306
Query: 90 MTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKPSESTGDA 148
+ L+QL + S+F A+ I +S + AN+S+ L P P ++ A
Sbjct: 1307 LNLTLRQLDQHLDLLKHSNFLGAYDSIRHAHSQSAEAERRANTSA-LAVPSPVSNSASA 1364
>sp|O90304|SPIKE_BRV1 Spike glycoprotein OS=Breda virus 1 GN=S PE=3 SV=1
Length = 1583
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 26 VHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQ 85
V S +S+AS+ SI+S E+R+ EL + ++++ ++++ L+ N +
Sbjct: 1111 VLSSGLSIASLGLSIFSIIEDRRVIELTQ--QQIMALEDQITILAGYTTKN---FEEIQS 1165
Query: 86 SLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKS 123
SL+ + Q++Q + ++ L+ S F +I Q KS
Sbjct: 1166 SLNTLGQQVQDFSQTSALSLQ-QLSNGFEQITQQLDKS 1202
>sp|Q4V7E8|LRRF2_RAT Leucine-rich repeat flightless-interacting protein 2 OS=Rattus
norvegicus GN=Lrrfip2 PE=2 SV=1
Length = 437
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQ 96
E RKL+REL AQ+K++ + TNSH+ E+ +N T L Q
Sbjct: 394 EKRKLQRELRTAQDKIEEMEM---TNSHLAKRLEKMKANRTALLAQ 436
>sp|Q91WK0|LRRF2_MOUSE Leucine-rich repeat flightless-interacting protein 2 OS=Mus
musculus GN=Lrrfip2 PE=1 SV=1
Length = 415
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQ 96
E RKL+REL AQ+K++ + TNSH+ E+ +N T L Q
Sbjct: 372 ERRKLQRELRTAQDKIEEMEM---TNSHLAKRLEKMKANRTALLAQ 414
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 29 SAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLS 88
SA + ++ S++ E +E+ K L + ++ + + +H +S E+
Sbjct: 1247 SARNASAASTAKLVEATEGLRHEIGKTTERLTQLEAELTAVQDENFNANHALSGLERDGL 1306
Query: 89 NMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKPSESTGD 147
+ L+QL E S+F A+ I +S + AN+S+ P P ++ D
Sbjct: 1307 ALNLTLRQLDQHLEILKHSNFLGAYDSIRHAHSQSTEAERRANAST-FAVPSPVSNSAD 1364
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2
Length = 3333
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 41 YSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVS 100
Y + ++ L REL D ++ +TL + NS +++ TQ ++L V
Sbjct: 1877 YRSAISNHGSKIEGLERELTDLNQEFETLQEKAQVNSRKAQTLNNNVNRATQSAKELDVK 1936
Query: 101 AEEKLRS 107
+ +R+
Sbjct: 1937 IKNVIRN 1943
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis
thaliana GN=RPT3 PE=1 SV=1
Length = 408
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 SVMHSPRNSPFLSKVNSKDE-DVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQ 63
S++ P+ SP L +++ DE D++G SL EE E + L+REL+ AQ
Sbjct: 8 SMVLDPKASPALMDLSTADEEDLYGRLKSLER-QLEFTDIQEEYVKDEQKNLKRELLRAQ 66
Query: 64 EKVQTLSS 71
E+V+ + S
Sbjct: 67 EEVKRIQS 74
>sp|Q9UJV3|TRIM1_HUMAN Probable E3 ubiquitin-protein ligase MID2 OS=Homo sapiens GN=MID2
PE=1 SV=3
Length = 735
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 45 EERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVV-----SAFEQSLSNMTQRLQQLTV 99
+E + +LRKL +++ + ++ ++ + +N H++ + F QS N+ +R+ T
Sbjct: 305 KETKVMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATA 364
Query: 100 SAEEKLRS-SFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKP 141
S++ + +F+ AF AL R ++ LTAP P
Sbjct: 365 SSQVLIPDINFNDAFE---NFALDFSREKKLLEGLDYLTAPNP 404
>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2
PE=2 SV=2
Length = 705
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 45 EERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVV-----SAFEQSLSNMTQRLQQLTV 99
+E + +LRKL +++ + ++ ++ + +N H++ + F QS N+ +R+ T
Sbjct: 305 KETKVMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATA 364
Query: 100 SAEEKLRS-SFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKP 141
S++ + +F+ AF AL R ++ LTAP P
Sbjct: 365 SSQVLIPDINFNDAFE---NFALDFSREKKLLEGLDYLTAPNP 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.303 0.115 0.286
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,423,168
Number of Sequences: 539616
Number of extensions: 1453899
Number of successful extensions: 6866
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 6655
Number of HSP's gapped (non-prelim): 533
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.2 bits)