Query psy2914
Match_columns 158
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 20:51:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11020 hypothetical protein; 73.2 11 0.00024 30.0 5.5 54 49-104 4-57 (118)
2 PF06305 DUF1049: Protein of u 72.7 4.7 0.0001 26.5 3.0 25 46-70 44-68 (68)
3 PF10458 Val_tRNA-synt_C: Valy 71.3 19 0.00041 24.4 5.7 51 49-99 3-60 (66)
4 KOG0432|consensus 64.7 25 0.00055 36.0 7.3 81 20-100 898-987 (995)
5 PF08581 Tup_N: Tup N-terminal 62.5 6 0.00013 28.7 2.0 19 44-62 58-76 (79)
6 PF09718 Tape_meas_lam_C: Lamb 61.3 38 0.00083 23.4 5.8 62 55-122 8-77 (78)
7 COG3879 Uncharacterized protei 59.5 15 0.00032 32.1 4.1 48 54-101 54-105 (247)
8 PF07106 TBPIP: Tat binding pr 58.6 28 0.00062 26.9 5.2 55 49-103 78-141 (169)
9 PF05103 DivIVA: DivIVA protei 58.5 12 0.00026 27.1 3.0 41 47-87 29-69 (131)
10 PF12325 TMF_TATA_bd: TATA ele 57.6 24 0.00051 27.3 4.6 66 43-108 16-98 (120)
11 PF10393 Matrilin_ccoil: Trime 54.1 31 0.00068 23.1 4.2 31 59-99 14-44 (47)
12 KOG0243|consensus 53.7 13 0.00028 38.2 3.3 55 48-102 409-472 (1041)
13 PRK11637 AmiB activator; Provi 53.2 18 0.00039 31.9 3.7 49 48-96 45-93 (428)
14 PF04420 CHD5: CHD5-like prote 51.7 40 0.00086 26.6 5.1 26 82-107 70-95 (161)
15 PF11932 DUF3450: Protein of u 45.8 47 0.001 27.3 4.9 47 52-98 51-97 (251)
16 PF00261 Tropomyosin: Tropomyo 44.0 30 0.00064 28.4 3.5 47 52-98 3-49 (237)
17 PRK14127 cell division protein 43.6 52 0.0011 25.3 4.5 29 47-75 41-69 (109)
18 PF15175 SPATA24: Spermatogene 42.2 62 0.0013 26.8 5.0 78 45-129 14-103 (153)
19 smart00150 SPEC Spectrin repea 42.0 93 0.002 20.0 5.7 56 51-106 39-98 (101)
20 PF11559 ADIP: Afadin- and alp 41.1 62 0.0013 24.5 4.6 62 47-108 56-117 (151)
21 PF00435 Spectrin: Spectrin re 41.1 96 0.0021 19.9 5.4 55 51-105 42-100 (105)
22 PF11932 DUF3450: Protein of u 39.8 55 0.0012 26.9 4.4 51 49-99 55-105 (251)
23 PF12709 Kinetocho_Slk19: Cent 39.3 31 0.00068 25.9 2.6 32 44-75 43-74 (87)
24 PF01519 DUF16: Protein of unk 39.1 55 0.0012 25.4 4.0 46 52-97 55-100 (102)
25 PF10473 CENP-F_leu_zip: Leuci 38.6 67 0.0014 25.6 4.5 49 50-98 24-72 (140)
26 PF06295 DUF1043: Protein of u 37.6 57 0.0012 24.9 3.9 44 48-94 30-73 (128)
27 KOG0994|consensus 37.4 55 0.0012 35.2 4.8 28 47-74 1229-1256(1758)
28 PF06013 WXG100: Proteins of 1 37.4 42 0.00091 21.3 2.7 26 52-77 20-45 (86)
29 PF09726 Macoilin: Transmembra 34.3 86 0.0019 30.6 5.4 29 46-74 421-449 (697)
30 COG5185 HEC1 Protein involved 34.1 72 0.0016 31.2 4.7 62 50-111 288-350 (622)
31 PF05529 Bap31: B-cell recepto 33.7 47 0.001 26.2 3.0 29 46-74 157-185 (192)
32 PF10845 DUF2576: Protein of u 32.1 46 0.001 22.9 2.3 24 53-76 14-37 (48)
33 KOG4196|consensus 31.4 61 0.0013 26.3 3.3 27 46-72 91-117 (135)
34 PF14802 TMEM192: TMEM192 fami 31.0 56 0.0012 27.8 3.2 25 46-70 212-236 (236)
35 COG2944 Predicted transcriptio 30.9 33 0.00072 26.4 1.7 44 49-95 46-92 (104)
36 PF09726 Macoilin: Transmembra 30.3 71 0.0015 31.2 4.1 49 41-89 451-499 (697)
37 PF10186 Atg14: UV radiation r 30.1 1.1E+02 0.0024 24.4 4.6 47 51-97 78-124 (302)
38 PF14282 FlxA: FlxA-like prote 30.0 65 0.0014 23.9 3.1 24 49-72 18-41 (106)
39 smart00787 Spc7 Spc7 kinetocho 29.5 1.2E+02 0.0026 26.7 5.1 38 58-95 205-242 (312)
40 PF15508 NAAA-beta: beta subun 28.6 1.9E+02 0.0041 20.6 5.2 53 42-94 12-64 (95)
41 PLN02381 valyl-tRNA synthetase 28.4 1.5E+02 0.0033 30.1 6.2 67 33-99 978-1053(1066)
42 PF00804 Syntaxin: Syntaxin; 28.2 1.6E+02 0.0034 19.7 4.5 51 49-99 6-59 (103)
43 PRK11637 AmiB activator; Provi 28.1 1.1E+02 0.0024 27.0 4.7 52 52-103 63-114 (428)
44 PTZ00419 valyl-tRNA synthetase 28.0 1.4E+02 0.003 29.8 5.7 52 48-99 927-985 (995)
45 KOG1850|consensus 27.3 72 0.0016 29.7 3.4 43 55-97 220-262 (391)
46 PF11853 DUF3373: Protein of u 26.5 44 0.00095 31.7 2.0 25 51-75 32-56 (489)
47 PF12186 AcylCoA_dehyd_C: Acyl 26.3 3.2E+02 0.0069 21.4 7.8 63 50-117 26-90 (114)
48 PRK11677 hypothetical protein; 26.1 1.1E+02 0.0023 24.3 3.8 44 48-94 34-77 (134)
49 PF04508 Pox_A_type_inc: Viral 26.0 26 0.00056 20.7 0.3 11 51-61 9-19 (23)
50 PF15035 Rootletin: Ciliary ro 25.9 2E+02 0.0043 23.5 5.4 59 46-108 12-79 (182)
51 COG3707 AmiR Response regulato 25.5 65 0.0014 27.3 2.6 19 50-68 125-143 (194)
52 PF02050 FliJ: Flagellar FliJ 25.5 2.1E+02 0.0046 19.1 5.5 53 50-104 19-71 (123)
53 PRK09039 hypothetical protein; 25.2 2.7E+02 0.0058 24.6 6.5 27 48-74 79-105 (343)
54 KOG3366|consensus 25.0 95 0.0021 26.0 3.4 45 45-89 22-77 (172)
55 KOG3335|consensus 24.7 71 0.0015 27.0 2.7 24 45-68 101-124 (181)
56 PF09728 Taxilin: Myosin-like 24.5 93 0.002 27.2 3.5 44 54-97 213-256 (309)
57 PF13935 Ead_Ea22: Ead/Ea22-li 24.3 1.5E+02 0.0032 22.8 4.2 38 52-95 99-136 (139)
58 PF08647 BRE1: BRE1 E3 ubiquit 24.2 2.1E+02 0.0045 20.8 4.8 46 52-97 47-92 (96)
59 PF11328 DUF3130: Protein of u 24.2 85 0.0018 24.0 2.8 44 51-108 42-85 (90)
60 PRK05729 valS valyl-tRNA synth 23.9 1.9E+02 0.0041 28.4 5.7 65 33-97 792-865 (874)
61 PF14193 DUF4315: Domain of un 23.8 1E+02 0.0022 22.7 3.1 28 46-73 4-31 (83)
62 PF08776 VASP_tetra: VASP tetr 23.8 1.2E+02 0.0026 20.1 3.1 22 45-66 5-27 (40)
63 PF04102 SlyX: SlyX; InterPro 23.1 94 0.002 21.4 2.7 18 52-69 20-37 (69)
64 KOG0978|consensus 22.6 1.9E+02 0.0042 28.8 5.5 52 49-100 495-546 (698)
65 PF02181 FH2: Formin Homology 22.5 3.9E+02 0.0084 22.7 6.8 53 48-100 279-331 (370)
66 KOG0977|consensus 22.4 3.4E+02 0.0074 26.3 7.0 80 16-95 6-102 (546)
67 PF05791 Bacillus_HBL: Bacillu 22.2 2.4E+02 0.0051 22.6 5.1 69 51-122 111-184 (184)
68 KOG0996|consensus 21.8 2.8E+02 0.0061 29.7 6.7 49 48-96 905-953 (1293)
69 PF12718 Tropomyosin_1: Tropom 21.7 1.8E+02 0.0038 22.7 4.2 60 49-108 34-96 (143)
70 PF06886 TPX2: Targeting prote 21.5 71 0.0015 21.8 1.8 14 47-60 38-51 (57)
71 PF04538 BEX: Brain expressed 21.3 72 0.0016 24.2 1.9 16 45-60 72-87 (100)
72 PF06005 DUF904: Protein of un 20.9 2.5E+02 0.0053 20.0 4.5 27 44-70 9-38 (72)
73 TIGR02449 conserved hypothetic 20.8 1.4E+02 0.003 21.3 3.1 27 48-74 33-59 (65)
74 PF05873 Mt_ATP-synt_D: ATP sy 20.4 1.8E+02 0.004 23.2 4.2 45 46-90 21-77 (161)
75 COG2433 Uncharacterized conser 20.3 1.8E+02 0.0038 29.0 4.7 66 43-108 429-497 (652)
76 PRK09413 IS2 repressor TnpA; R 20.3 1.4E+02 0.003 22.0 3.3 23 47-69 75-97 (121)
77 PF04912 Dynamitin: Dynamitin 20.2 1.6E+02 0.0035 25.9 4.1 27 44-70 88-114 (388)
78 PF12777 MT: Microtubule-bindi 20.1 2E+02 0.0043 25.0 4.6 23 52-74 237-259 (344)
No 1
>PRK11020 hypothetical protein; Provisional
Probab=73.24 E-value=11 Score=29.96 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhh
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqK 104 (158)
..||.+|.-.|+..+-|.+. .+...++.+|+.|++....++.++.+|-.....|
T Consensus 4 K~Eiq~L~drLD~~~~Klaa--a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAA--ASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988 6778899999999999999999999887655554
No 2
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.71 E-value=4.7 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhh
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLS 70 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LT 70 (158)
-+...++|+++|+++..+.++..|+
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566789999999999999988763
No 3
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=71.34 E-value=19 Score=24.39 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhccccc-------ccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNT-------NSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~-------NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
+.||.+|.++++..+..+..+...|+. -.+||+.--..|.++...+..|..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~ 60 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888874 467888877788887777776643
No 4
>KOG0432|consensus
Probab=64.73 E-value=25 Score=36.03 Aligned_cols=81 Identities=22% Similarity=0.373 Sum_probs=59.7
Q ss_pred CCCCCCcccceeeeeccccccccChhh--hhhHHHHHHHHHHHHhhhhHhhhhc-------ccccccchhhhhhhhHHHH
Q psy2914 20 NSKDEDVHGSAMSLASVSSSIYSTPEE--RQSYELRKLRRELVDAQEKVQTLSS-------QLNTNSHVVSAFEQSLSNM 90 (158)
Q Consensus 20 ~~~~deVHGSsLSLvSs~SSlYSt~EE--k~~~EIRkLrRELe~aqekV~~LTs-------QLs~NahlVaaFEQsL~nM 90 (158)
++..++..|+.++.+|....+|=-... -.+.||.||.+.|+..|.++..|+. |..+...++++++.+|.+.
T Consensus 898 ~~~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~~~~~~Kl~~~ 977 (995)
T KOG0432|consen 898 SPAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKAPLEVKEKNKEKLKEL 977 (995)
T ss_pred cCCccccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHH
Confidence 556666799999999999988833222 1235677776666666666665554 4667788999999999999
Q ss_pred HHHHHhhhhH
Q psy2914 91 TQRLQQLTVS 100 (158)
Q Consensus 91 T~RLq~Lt~t 100 (158)
...+++|...
T Consensus 978 ~~ei~~~~~~ 987 (995)
T KOG0432|consen 978 EAEIENLKAA 987 (995)
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 5
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.54 E-value=6 Score=28.74 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q psy2914 44 PEERQSYELRKLRRELVDA 62 (158)
Q Consensus 44 ~EEk~~~EIRkLrRELe~a 62 (158)
..++|..||.+||++|+.-
T Consensus 58 mK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 58 MKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5678888999999999863
No 6
>PF09718 Tape_meas_lam_C: Lambda phage tail tape-measure protein (Tape_meas_lam_C); InterPro: IPR006431 This entry is represented by the C-terminal region of Bacteriophage lambda, GpH. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group are characterised by a relatively well-conserved region near the C terminus of GpH - the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=61.28 E-value=38 Score=23.41 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch---hhh-----hhhhHhhhhhc
Q psy2914 55 LRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS---FSK-----AFSRIVQIALK 122 (158)
Q Consensus 55 LrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL---~lk-----~aq~~i~galn 122 (158)
.++-+.++.+...+.-.| +-++|...+..|+.-|-.+..+-..-=..+ +|+ ++|.+|-++|.
T Consensus 8 ~~~a~~~~~~~a~n~a~~------~~~~~~~a~~~~~dal~~f~~tgK~~f~~~~~Sil~dla~ia~q~~i~~~l~ 77 (78)
T PF09718_consen 8 AKSALADYADSAQNVASQ------AEDAFSSAFDGMTDALVDFVTTGKASFKDFAKSILSDLARIAAQQAITQALS 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 567788888887775554 678899999999999998888766543334 444 67777766654
No 7
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.45 E-value=15 Score=32.10 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhhHhhhhcccccccchhhhhh----hhHHHHHHHHHhhhhHh
Q psy2914 54 KLRRELVDAQEKVQTLSSQLNTNSHVVSAFE----QSLSNMTQRLQQLTVSA 101 (158)
Q Consensus 54 kLrRELe~aqekV~~LTsQLs~NahlVaaFE----QsL~nMT~RLq~Lt~ta 101 (158)
+|+.|+.+.|+++.+|-.+....-..++.|. ....-|-.||+.|.+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 8999999999999999999888877777777 33444555566555544
No 8
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.61 E-value=28 Score=26.91 Aligned_cols=55 Identities=24% Similarity=0.524 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhccc------cccc---chhhhhhhhHHHHHHHHHhhhhHhhh
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQL------NTNS---HVVSAFEQSLSNMTQRLQQLTVSAEE 103 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQL------s~Na---hlVaaFEQsL~nMT~RLq~Lt~taeq 103 (158)
..||..|+.++...+..+..|...| .+|. ..+..+++.+..|..||+.|......
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3457777777766666666655443 2333 44677888999999999998874444
No 9
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=58.53 E-value=12 Score=27.11 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhH
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSL 87 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL 87 (158)
....++..|.++....+.+|..|..++...........+.|
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 44566888888888999999888888877655554444444
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=57.59 E-value=24 Score=27.33 Aligned_cols=66 Identities=32% Similarity=0.365 Sum_probs=42.8
Q ss_pred ChhhhhhHHHHHHHHHHHHhhhhHhhhhcc-----------------cccccchhhhhhhhHHHHHHHHHhhhhHhhhhc
Q psy2914 43 TPEERQSYELRKLRRELVDAQEKVQTLSSQ-----------------LNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKL 105 (158)
Q Consensus 43 t~EEk~~~EIRkLrRELe~aqekV~~LTsQ-----------------Ls~NahlVaaFEQsL~nMT~RLq~Lt~taeqKd 105 (158)
..-|+.+.+||.+--|+..+|+.+..|..+ +.....-+...++.+..+-.|.+.+-.-=-.|.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 367889999999999999999988888665 122233344455556666666655544444454
Q ss_pred cch
Q psy2914 106 RSS 108 (158)
Q Consensus 106 sEL 108 (158)
.++
T Consensus 96 E~v 98 (120)
T PF12325_consen 96 EEV 98 (120)
T ss_pred HHH
Confidence 444
No 11
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=54.06 E-value=31 Score=23.14 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=21.9
Q ss_pred HHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 59 LVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 59 Le~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
+-.+|.+|.... ++..++|..|+.||+.|-+
T Consensus 14 lv~FQ~~v~~~l----------q~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 14 LVAFQNKVTSAL----------QSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHh
Confidence 456777776643 3445679999999998754
No 12
>KOG0243|consensus
Probab=53.72 E-value=13 Score=38.18 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcc---------cccccchhhhhhhhHHHHHHHHHhhhhHhh
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQ---------LNTNSHVVSAFEQSLSNMTQRLQQLTVSAE 102 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQ---------Ls~NahlVaaFEQsL~nMT~RLq~Lt~tae 102 (158)
+..||.||||+|-++++|---+.+| ...++..+...|..|.+.-.+|..|++...
T Consensus 409 ~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999887665554 567888888888888888888877776554
No 13
>PRK11637 AmiB activator; Provisional
Probab=53.19 E-value=18 Score=31.90 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHh
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQ 96 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~ 96 (158)
.+.++..++++++..+.++..+..++.....-+...++.|......+..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE 93 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555544444444333344444444444444433
No 14
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=51.69 E-value=40 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHhhhhHhhhhccc
Q psy2914 82 AFEQSLSNMTQRLQQLTVSAEEKLRS 107 (158)
Q Consensus 82 aFEQsL~nMT~RLq~Lt~taeqKdsE 107 (158)
-.++.+..+..-|+.+.+.-..+...
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSEKSS 95 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777777666655544443
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.81 E-value=47 Score=27.29 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhh
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLT 98 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt 98 (158)
-+.|..++...+..+..|..+...-...|+.-++.+..+..++..+.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433334444444444444444444443
No 16
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.03 E-value=30 Score=28.44 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhh
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLT 98 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt 98 (158)
|..|+.+++.+++++..+..+|..--.....+|+.+..|..|++.|-
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE 49 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE 49 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777766665566677777777777777663
No 17
>PRK14127 cell division protein GpsB; Provisional
Probab=43.63 E-value=52 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhccccc
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTLSSQLNT 75 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~LTsQLs~ 75 (158)
....|+..|++++...++++..+..|+..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456777777777777777777776654
No 18
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=42.24 E-value=62 Score=26.76 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=48.9
Q ss_pred hhhhhHH-----HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccchhhh--hhhhHh
Q psy2914 45 EERQSYE-----LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSK--AFSRIV 117 (158)
Q Consensus 45 EEk~~~E-----IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL~lk--~aq~~i 117 (158)
+||.+|. +.+=-..|+=|...|..|+.||.--. .|||..|..|-.+...=+ .|...|+-| +.+..|
T Consensus 14 ~Ek~eHaKTK~lLake~EKLqfAlgeieiL~kQl~rek---~afe~a~~~vk~k~~~Es----~k~dqL~~KC~~~~~ei 86 (153)
T PF15175_consen 14 EEKAEHAKTKALLAKESEKLQFALGEIEILSKQLEREK---LAFEKALGSVKSKVLQES----SKKDQLITKCNEIESEI 86 (153)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 5566655 22223456778899999999998654 799999998888776322 334445445 444444
Q ss_pred h-----hhhcCCccccc
Q psy2914 118 Q-----IALKSPRLQEA 129 (158)
Q Consensus 118 ~-----galn~p~~~~~ 129 (158)
. +.||.-|+..+
T Consensus 87 ~c~kqed~LngKe~~I~ 103 (153)
T PF15175_consen 87 ICHKQEDILNGKENEIK 103 (153)
T ss_pred HhcchhhhhcccccchH
Confidence 3 55666544433
No 19
>smart00150 SPEC Spectrin repeats.
Probab=41.98 E-value=93 Score=19.98 Aligned_cols=56 Identities=25% Similarity=0.346 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhHhhhhcc---cc-cccchhhhhhhhHHHHHHHHHhhhhHhhhhcc
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQ---LN-TNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLR 106 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQ---Ls-~NahlVaaFEQsL~nMT~RLq~Lt~taeqKds 106 (158)
+...+.+|++..+.+|..+... |. .+..-.......+..|..|-+.|....+.+..
T Consensus 39 ~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 98 (101)
T smart00150 39 KHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQ 98 (101)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888776544 22 22333456777888888888888777766544
No 20
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.13 E-value=62 Score=24.52 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
....++++|+-+++..+..|..|..++..=-.-++.++.....+...+..+......=..|+
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999998887777777888888888888887766555445555
No 21
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.11 E-value=96 Score=19.89 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhhHhhhhcc---c-ccccchhhhhhhhHHHHHHHHHhhhhHhhhhc
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQ---L-NTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKL 105 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQ---L-s~NahlVaaFEQsL~nMT~RLq~Lt~taeqKd 105 (158)
+.+.+.+++...+.+|..|... | ..+..-.....+.+..+-.|-+.|......+.
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~ 100 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERR 100 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777766666543 2 22233457778888888888888877766553
No 22
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.76 E-value=55 Score=26.93 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
..||+.|.+|++..+..+..|..++...-.-++..++.+.++..--+.|..
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888888888888888888888877777665555544
No 23
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=39.29 E-value=31 Score=25.91 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHhhhhccccc
Q psy2914 44 PEERQSYELRKLRRELVDAQEKVQTLSSQLNT 75 (158)
Q Consensus 44 ~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~ 75 (158)
-|.||+..|++|..++....+.|..|..+|.+
T Consensus 43 Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 43 YEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999888888877654
No 24
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=39.07 E-value=55 Score=25.36 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhh
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~L 97 (158)
|++|-...+.-=|+|..|.-+.-+-..-....++.|..|-.||..+
T Consensus 55 I~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 55 INKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777776666667777776666666666677788888888888764
No 25
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.57 E-value=67 Score=25.62 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhh
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLT 98 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt 98 (158)
+-|..|.|||+.+|..-..+..+.-+.-..+..++..+..||..+..|.
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999999998888888888888888888888888888777654
No 26
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.63 E-value=57 Score=24.90 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL 94 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL 94 (158)
.+.|+.+.+.||+.+|..|.+ -+...|.|+....++-..+-.||
T Consensus 30 l~~eL~~~k~el~~yk~~V~~---HF~~ta~Ll~~l~~~Y~~l~~Hl 73 (128)
T PF06295_consen 30 LEQELEQAKQELEQYKQEVND---HFAQTAELLDNLTQDYQKLYQHL 73 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777765 23344455555444444444443
No 27
>KOG0994|consensus
Probab=37.42 E-value=55 Score=35.20 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhcccc
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~LTsQLs 74 (158)
+...++..|||+|.+.+++...+-..|+
T Consensus 1229 ~l~~~~~~lr~~l~~~~e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1229 QLASATESLRRQLQALTEDLPQEEETLS 1256 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3445577788888888877665444443
No 28
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=37.42 E-value=42 Score=21.32 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHhhhhccccccc
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNS 77 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~Na 77 (158)
...|+..++..+..|..|.......+
T Consensus 20 ~~~l~~~~~~l~~~~~~l~~~W~G~a 45 (86)
T PF06013_consen 20 ADELQSQLQQLESSIDSLQASWQGEA 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGBTSST
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCchH
Confidence 45566666666666777766655554
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.33 E-value=86 Score=30.63 Aligned_cols=29 Identities=34% Similarity=0.506 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcccc
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQLs 74 (158)
.|.+.||+|||.||..++.-=..|-+|++
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 56778899999999998887777777733
No 30
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.15 E-value=72 Score=31.19 Aligned_cols=62 Identities=23% Similarity=0.228 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch-hhh
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS-FSK 111 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL-~lk 111 (158)
.|.+||-...+-..+|.-+|+.-.+..-.-+.+.+|+-...++.+..|..--++|++|+ .|+
T Consensus 288 ~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 288 QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777888899999999999999999999999999999999999999999999 666
No 31
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.72 E-value=47 Score=26.17 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcccc
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQLs 74 (158)
.+...||.+|++||+..+..+..|-.|..
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999998888888777643
No 32
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=32.07 E-value=46 Score=22.87 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhHhhhhcccccc
Q psy2914 53 RKLRRELVDAQEKVQTLSSQLNTN 76 (158)
Q Consensus 53 RkLrRELe~aqekV~~LTsQLs~N 76 (158)
..|||||.+.+.+|..|-+.-+++
T Consensus 14 eqlrrelnsLR~~vhelctRs~t~ 37 (48)
T PF10845_consen 14 EQLRRELNSLRRSVHELCTRSTTG 37 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999999997765554
No 33
>KOG4196|consensus
Probab=31.45 E-value=61 Score=26.34 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcc
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQ 72 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQ 72 (158)
|+...|+-.++||++.+..|+..|...
T Consensus 91 ~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 91 EKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556777888888888888776544
No 34
>PF14802 TMEM192: TMEM192 family
Probab=30.97 E-value=56 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhh
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLS 70 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LT 70 (158)
|||+.-||.||++-...++++..||
T Consensus 212 EkQadlI~yLk~hn~~L~~ril~l~ 236 (236)
T PF14802_consen 212 EKQADLIRYLKEHNARLSRRILALT 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6888889999999999999998876
No 35
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=30.94 E-value=33 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhh---hHHHHHHHHH
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQ---SLSNMTQRLQ 95 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQ---sL~nMT~RLq 95 (158)
-.||+.+|+.+.=+|...+. -|++....|+.||| ..+.+..+|-
T Consensus 46 ~~eIk~iRe~~~lSQ~vFA~---~L~vs~~Tv~~WEqGr~kPsg~AlkLL 92 (104)
T COG2944 46 PTEIKAIREKLGLSQPVFAR---YLGVSVSTVRKWEQGRKKPSGAALKLL 92 (104)
T ss_pred HHHHHHHHHHhCCCHHHHHH---HHCCCHHHHHHHHcCCcCCCCHHHHHH
Confidence 35899999999999998876 47888888999998 3444444444
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.34 E-value=71 Score=31.20 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred ccChhhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHH
Q psy2914 41 YSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSN 89 (158)
Q Consensus 41 YSt~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~n 89 (158)
|.+.|.....||..||+|-+..|.|+..|+.+.-.-=.-.+..|+.|..
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677788888888888887776654444444445554443
No 37
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.09 E-value=1.1e+02 Score=24.44 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhh
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~L 97 (158)
+|.+++++++..++++..+-.++..--...++..+........+..+
T Consensus 78 ~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 124 (302)
T PF10186_consen 78 RIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEEL 124 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666555555554444433334444444444444433
No 38
>PF14282 FlxA: FlxA-like protein
Probab=29.96 E-value=65 Score=23.86 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcc
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQ 72 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQ 72 (158)
...|..|.+.+...++++..|...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~ 41 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD 41 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 667999999999999999998774
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.52 E-value=1.2e+02 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=22.9
Q ss_pred HHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHH
Q psy2914 58 ELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQ 95 (158)
Q Consensus 58 ELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq 95 (158)
||..+++++..+-.++..--+-++-+++.|.....++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555556666666666666666
No 40
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=28.57 E-value=1.9e+02 Score=20.64 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=42.5
Q ss_pred cChhhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH
Q psy2914 42 STPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL 94 (158)
Q Consensus 42 St~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL 94 (158)
..++|||..=++..+.++....+-+.++...+..+..++...++-+..|..++
T Consensus 12 lpP~eRw~~i~~~~k~~i~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~ 64 (95)
T PF15508_consen 12 LPPEERWVQIAKDYKDEIRELIEVLKDLLQSFVPSGKVLDFVDKLLPHLLRYL 64 (95)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhC
Confidence 46899999889999999988888888888887777777887777777666544
No 41
>PLN02381 valyl-tRNA synthetase
Probab=28.44 E-value=1.5e+02 Score=30.15 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=47.2
Q ss_pred eeccccccccChhhh--hhHHHHHHHHHHHHhhhhHhhhhccccccc-------chhhhhhhhHHHHHHHHHhhhh
Q psy2914 33 LASVSSSIYSTPEER--QSYELRKLRRELVDAQEKVQTLSSQLNTNS-------HVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 33 LvSs~SSlYSt~EEk--~~~EIRkLrRELe~aqekV~~LTsQLs~Na-------hlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
.++....+|=-..+. .+.|+.||.++++..|..+..+...|+.-. +||+.-.+.|..+...++.|..
T Consensus 978 ~v~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~ 1053 (1066)
T PLN02381 978 NVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEK 1053 (1066)
T ss_pred EecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444433 457899999999999999999988887644 7888877777776666665443
No 42
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=28.21 E-value=1.6e+02 Score=19.68 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchh---hhhhhhHHHHHHHHHhhhh
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVV---SAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlV---aaFEQsL~nMT~RLq~Lt~ 99 (158)
-.++..++.++...+..|..|.......-..+ ...++.+..+|.-+..+..
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~ 59 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQ 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 34444445555444444444433321111111 3455555555555444443
No 43
>PRK11637 AmiB activator; Provisional
Probab=28.07 E-value=1.1e+02 Score=26.99 Aligned_cols=52 Identities=10% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhh
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEE 103 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeq 103 (158)
|..+++++...+.++..|..++.....-+..-++.+..+-..+..+...-..
T Consensus 63 i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 63 VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555555555544443333
No 44
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=28.05 E-value=1.4e+02 Score=29.77 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhccccc-------ccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNT-------NSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~-------NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
.+.|+.||.++++..+..+..+...|+. ..+||+.-.++|..+...+..|..
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~ 985 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQ 985 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888888888765 348888888888877766665543
No 45
>KOG1850|consensus
Probab=27.34 E-value=72 Score=29.68 Aligned_cols=43 Identities=21% Similarity=0.449 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhh
Q psy2914 55 LRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 55 LrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~L 97 (158)
|..++.-|-+|+..+++-|+--+.|+..|-|.+..||.++..|
T Consensus 220 lK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kkl 262 (391)
T KOG1850|consen 220 LKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKL 262 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999987654
No 46
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.49 E-value=44 Score=31.73 Aligned_cols=25 Identities=12% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhhHhhhhccccc
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQLNT 75 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQLs~ 75 (158)
+|.+|.+||++.++++..|..+++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 8999999999999998877666544
No 47
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=26.34 E-value=3.2e+02 Score=21.40 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH--HhhhhHhhhhccchhhhhhhhHh
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL--QQLTVSAEEKLRSSFSKAFSRIV 117 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL--q~Lt~taeqKdsEL~lk~aq~~i 117 (158)
..+.+|+...+.+-.+|.. ..|.++.+-.-+.|++||.++ ..|-.....|..||+.|-|...+
T Consensus 26 ~rl~~m~~~yeeav~~Vke-----~~nqe~~Df~ARRLvEMa~~iims~LLl~dA~k~pelf~kSA~Vyv 90 (114)
T PF12186_consen 26 ERLKKMTEKYEEAVAKVKE-----AKNQELQDFHARRLVEMAAHIIMSYLLLRDASKAPELFAKSANVYV 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-----hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3477777777777777764 456777888889999999885 34555566688888666444333
No 48
>PRK11677 hypothetical protein; Provisional
Probab=26.09 E-value=1.1e+02 Score=24.32 Aligned_cols=44 Identities=16% Similarity=0.380 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL 94 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL 94 (158)
.+.|+.+.+.||+.+|..|.+ -...-|+|+..+-++-..+-+||
T Consensus 34 le~eLe~~k~ele~YkqeV~~---HFa~TA~Ll~~L~~~Y~~Ly~Hl 77 (134)
T PRK11677 34 LQYELEKNKAELEEYRQELVS---HFARSAELLDTMAKDYRQLYQHM 77 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777777777777765 33345666666666655555555
No 49
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.99 E-value=26 Score=20.72 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q psy2914 51 ELRKLRRELVD 61 (158)
Q Consensus 51 EIRkLrRELe~ 61 (158)
.|+.|-|+|..
T Consensus 9 rI~dLer~L~~ 19 (23)
T PF04508_consen 9 RISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHH
Confidence 34455555444
No 50
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.92 E-value=2e+02 Score=23.54 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcccccccc---------hhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQLNTNSH---------VVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQLs~Nah---------lVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
.+++..|.+|..++..|+.+..+|-.|+++... ....-...|..+-.||. -..++-.+|
T Consensus 12 q~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLe----EEqqR~~~L 79 (182)
T PF15035_consen 12 QRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLE----EEQQRSEEL 79 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHH----HHHHhHHHH
Confidence 456667999999999999999999999966511 11111245666777776 344445554
No 51
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=25.51 E-value=65 Score=27.28 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhHhh
Q psy2914 50 YELRKLRRELVDAQEKVQT 68 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~ 68 (158)
.|+++||+|++.+++++..
T Consensus 125 ~~~~~L~~el~~~k~~L~~ 143 (194)
T COG3707 125 EERRALRRELAKLKDRLEE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999876
No 52
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=25.50 E-value=2.1e+02 Score=19.12 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhh
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqK 104 (158)
..|..|..+...++.++.... + ..+..-+..+..-+..+..++..+...-+.-
T Consensus 19 ~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 71 (123)
T PF02050_consen 19 EQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERL 71 (123)
T ss_dssp HHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777666 4 5566666666666666666665554443333
No 53
>PRK09039 hypothetical protein; Validated
Probab=25.22 E-value=2.7e+02 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccc
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs 74 (158)
.+.+|..|+++++.++..-..|..++.
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456666666655555555555443
No 54
>KOG3366|consensus
Probab=24.97 E-value=95 Score=26.03 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHhhhhcccc-----------cccchhhhhhhhHHH
Q psy2914 45 EERQSYELRKLRRELVDAQEKVQTLSSQLN-----------TNSHVVSAFEQSLSN 89 (158)
Q Consensus 45 EEk~~~EIRkLrRELe~aqekV~~LTsQLs-----------~NahlVaaFEQsL~n 89 (158)
-..+.+++..+|+--+.++.+|.+|-.|.+ +|+.||.-||..-..
T Consensus 22 ~~~~~~~~s~fk~~~~~~~~~l~~lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~s 77 (172)
T KOG3366|consen 22 PPNQAAEFSSFKSRNDEAVSRLLTLPEQPPTIDWAYYRKVVANAGLVDKYEKKYDS 77 (172)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHhcccCCCccCHHHHHHHhhhhHHHHHHHHHHHh
Confidence 345677899999999999999999988832 899999999975443
No 55
>KOG3335|consensus
Probab=24.74 E-value=71 Score=27.00 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHhh
Q psy2914 45 EERQSYELRKLRRELVDAQEKVQT 68 (158)
Q Consensus 45 EEk~~~EIRkLrRELe~aqekV~~ 68 (158)
||+...||-+||.+++....+|..
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~ 124 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAE 124 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777787777665543333
No 56
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.52 E-value=93 Score=27.17 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhh
Q psy2914 54 KLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 54 kLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~L 97 (158)
.||..|+.|-+|+..+..-|+..+.++..|-+.+..|+..+..|
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kkl 256 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKL 256 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999998889999999999999999999988754
No 57
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=24.30 E-value=1.5e+02 Score=22.85 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHH
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQ 95 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq 95 (158)
+++||.+|+.+...+ ...++|--.++|.....|.+|+-
T Consensus 99 ~~~l~~~Le~ae~~~------~~~~~~~~~~~e~~~~~~~~ria 136 (139)
T PF13935_consen 99 VQKLRVELEAAEKRI------AAELAEQAEAYEGEIADYAKRIA 136 (139)
T ss_pred HHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 12233333455555555555554
No 58
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.19 E-value=2.1e+02 Score=20.79 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhh
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~L 97 (158)
+--+.|..++....+-.|..|++-|..++..+.+.=...+.+|..+
T Consensus 47 yfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 47 YFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4447777888888888889999999999999988777777777654
No 59
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=24.17 E-value=85 Score=23.96 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
-|..||.-|.+.=+ +|+.|++.+..=..||+.+-..=.+||.++
T Consensus 42 sin~~r~Al~dLv~--------------~Ve~fq~v~~~DA~RlkkmG~a~~kqD~~l 85 (90)
T PF11328_consen 42 SINQLRTALIDLVD--------------VVENFQQVVKKDASRLKKMGKAFTKQDQKL 85 (90)
T ss_pred hHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888877776544 567899999999999999988888887665
No 60
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=23.87 E-value=1.9e+02 Score=28.37 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=43.2
Q ss_pred eeccccccccChhhh--hhHHHHHHHHHHHHhhhhHhhhhccccccc-------chhhhhhhhHHHHHHHHHhh
Q psy2914 33 LASVSSSIYSTPEER--QSYELRKLRRELVDAQEKVQTLSSQLNTNS-------HVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 33 LvSs~SSlYSt~EEk--~~~EIRkLrRELe~aqekV~~LTsQLs~Na-------hlVaaFEQsL~nMT~RLq~L 97 (158)
.+.....+|=..++. .+.|+.||.++|+..|..+..+...|+.-. +||+.-.++|...-.-+..|
T Consensus 792 ~v~~~~~i~l~l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l 865 (874)
T PRK05729 792 AVVGGAELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKL 865 (874)
T ss_pred EEecCeEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455545556444433 456789999999999999999988887654 56666665555554444433
No 61
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.83 E-value=1e+02 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhccc
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQL 73 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQL 73 (158)
+|...||.|-|.....+|.++-.|-.|.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888777766554
No 62
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=23.77 E-value=1.2e+02 Score=20.13 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=17.5
Q ss_pred hhhhhHH-HHHHHHHHHHhhhhH
Q psy2914 45 EERQSYE-LRKLRRELVDAQEKV 66 (158)
Q Consensus 45 EEk~~~E-IRkLrRELe~aqekV 66 (158)
-|+...| +..+||||+..++.+
T Consensus 5 le~~KqEIL~EvrkEl~K~K~EI 27 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKVKEEI 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677 888999999888765
No 63
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.07 E-value=94 Score=21.40 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhHhhh
Q psy2914 52 LRKLRRELVDAQEKVQTL 69 (158)
Q Consensus 52 IRkLrRELe~aqekV~~L 69 (158)
|..|...+-.-|.++..|
T Consensus 20 ie~Ln~~v~~Qq~~I~~L 37 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRL 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
No 64
>KOG0978|consensus
Probab=22.61 E-value=1.9e+02 Score=28.82 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhH
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVS 100 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~t 100 (158)
..+++.||.|+....+.+.+|.++.++--+.+..||-.+...+...+.+..-
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~e 546 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKE 546 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence 3456779999999999999999999998899999998888888877766543
No 65
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=22.52 E-value=3.9e+02 Score=22.73 Aligned_cols=53 Identities=9% Similarity=0.261 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhH
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVS 100 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~t 100 (158)
...+|+.|++++...+..+.....+...+......+..-+.....++..|...
T Consensus 279 l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~ 331 (370)
T PF02181_consen 279 LEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQEL 331 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999888877777788888888888888888877766543
No 66
>KOG0977|consensus
Probab=22.43 E-value=3.4e+02 Score=26.34 Aligned_cols=80 Identities=25% Similarity=0.266 Sum_probs=54.9
Q ss_pred cccCCCCCCCcccceeeee--ccccccccChhhhhhHHHHHHHHHHHHhhhhHhhhhcc--------------cc-cccc
Q psy2914 16 LSKVNSKDEDVHGSAMSLA--SVSSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQ--------------LN-TNSH 78 (158)
Q Consensus 16 ~~s~~~~~deVHGSsLSLv--Ss~SSlYSt~EEk~~~EIRkLrRELe~aqekV~~LTsQ--------------Ls-~Nah 78 (158)
+.+++....+.+||+.|=+ +++.+..=...++--.||..|.--|.+|=+||-.|-.| .. .-++
T Consensus 6 ~~s~~~~~t~~~~~tssg~~~~~~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ 85 (546)
T KOG0977|consen 6 TRSPGSGTTELPSSTSSGVSASNAASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSG 85 (546)
T ss_pred ccCCccccCcCCCccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3444455666667766665 33333333355555567999999999999999998887 22 2377
Q ss_pred hhhhhhhhHHHHHHHHH
Q psy2914 79 VVSAFEQSLSNMTQRLQ 95 (158)
Q Consensus 79 lVaaFEQsL~nMT~RLq 95 (158)
|-..||-.|.....-|.
T Consensus 86 ik~~ye~El~~ar~~l~ 102 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLD 102 (546)
T ss_pred hhHHhhhhHHHHHHHHH
Confidence 88889988887766655
No 67
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.19 E-value=2.4e+02 Score=22.60 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch-hhh----hhhhHhhhhhc
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS-FSK----AFSRIVQIALK 122 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL-~lk----~aq~~i~galn 122 (158)
-|.+|+.+....|++|..+...|..-..-. .+...++..+...++..-.-...++ .|+ ..++.|+..||
T Consensus 111 ~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l---~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~~~~ 184 (184)
T PF05791_consen 111 IIEDLQDQIQKNQDKVQALINELNDFKDKL---QKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKKDLN 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-GG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcC
Confidence 388899999999999988877766544333 3333334444444444433344444 333 66677766654
No 68
>KOG0996|consensus
Probab=21.77 E-value=2.8e+02 Score=29.71 Aligned_cols=49 Identities=14% Similarity=0.338 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHh
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQ 96 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~ 96 (158)
+..+|+++...++....++..++.++.+|..-++.|+..+++.+.-...
T Consensus 905 qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~ 953 (1293)
T KOG0996|consen 905 QKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIED 953 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999999999999999999987665543
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.70 E-value=1.8e+02 Score=22.72 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHH---HHHHHHHhhhhHhhhhccch
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLS---NMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~---nMT~RLq~Lt~taeqKdsEL 108 (158)
..||..|.+.+......|..+..+|..--+....=++... +++.|++.|-.-.+.-+.-|
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3457766666665555555555554433322222232222 58888887766555555444
No 70
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=21.47 E-value=71 Score=21.82 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHH
Q psy2914 47 RQSYELRKLRRELV 60 (158)
Q Consensus 47 k~~~EIRkLrRELe 60 (158)
....||++||++|.
T Consensus 38 ~ee~eik~LRk~lv 51 (57)
T PF06886_consen 38 EEEEEIKQLRKELV 51 (57)
T ss_pred HHHHHHHHHHHHcC
Confidence 33456888888764
No 71
>PF04538 BEX: Brain expressed X-linked like family ; InterPro: IPR021156 This entry includes the human p75NTR-associated cell death executor (Nerve growth factor receptor associated protein 1), which may be a signalling adaptor molecule involved in p75NTR-apoptosis induced by nerve growth factor. It may be important in neurogenetic diseases. The proteins are also annotated as Brain expressed X-linked like (BEX), which is a signalling adapter molecule involved in p75NTR-mediated apoptosis induced by NGF, which plays an role in zinc-triggered neuronal death.
Probab=21.30 E-value=72 Score=24.16 Aligned_cols=16 Identities=50% Similarity=0.570 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHH
Q psy2914 45 EERQSYELRKLRRELV 60 (158)
Q Consensus 45 EEk~~~EIRkLrRELe 60 (158)
-||...|||+||++|-
T Consensus 72 meR~~eE~R~~r~Kl~ 87 (100)
T PF04538_consen 72 MERFMEEMRKLRQKLR 87 (100)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3566688999998875
No 72
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.86 E-value=2.5e+02 Score=19.97 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=20.8
Q ss_pred hhhhhhH--H-HHHHHHHHHHhhhhHhhhh
Q psy2914 44 PEERQSY--E-LRKLRRELVDAQEKVQTLS 70 (158)
Q Consensus 44 ~EEk~~~--E-IRkLrRELe~aqekV~~LT 70 (158)
.|.|++. + |..|++|.+..+++...|.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4666654 3 8889999999999888776
No 73
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.79 E-value=1.4e+02 Score=21.27 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccc
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs 74 (158)
+..|=+.|....+.|+.+|..+.++|.
T Consensus 33 ~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 33 WREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555566666666666666655543
No 74
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=20.36 E-value=1.8e+02 Score=23.17 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcc------------cccccchhhhhhhhHHHH
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQ------------LNTNSHVVSAFEQSLSNM 90 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQ------------Ls~NahlVaaFEQsL~nM 90 (158)
..+..++..||+.-+.++.+|..|-.+ |..|..||+.||+....+
T Consensus 21 ~~~~~~~~afk~r~d~~~~~v~~~pe~pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~ 77 (161)
T PF05873_consen 21 PEQKAQFQAFKKRSDEYKRRVSKLPEQPPKIDWAHYKSVLKENPGLVDEFEKQYESF 77 (161)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHS-SS-----HHHHHHC-S-STTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHhhhhHHHHHHHHHHHhcc
Confidence 345678999999999999999998877 334999999999965443
No 75
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=1.8e+02 Score=29.00 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=42.8
Q ss_pred ChhhhhhHHHHHHHHHHHHhhhhHhhhhcccc---cccchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 43 TPEERQSYELRKLRRELVDAQEKVQTLSSQLN---TNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 43 t~EEk~~~EIRkLrRELe~aqekV~~LTsQLs---~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
..-|++..|++.|.++++..+..+..|-.+|. .+.+.-.--+..+..+-.|+..|.-.=+.|+.++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888888888888776643 3344333344555666666666666555555555
No 76
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.31 E-value=1.4e+02 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.201 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhh
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTL 69 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~L 69 (158)
..+.||++|+|++...+..+.-|
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diL 97 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999988888776643
No 77
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.18 E-value=1.6e+02 Score=25.90 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHhhhh
Q psy2914 44 PEERQSYELRKLRRELVDAQEKVQTLS 70 (158)
Q Consensus 44 ~EEk~~~EIRkLrRELe~aqekV~~LT 70 (158)
..|-....+++||||++...+.|..+.
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566667888888888888887763
No 78
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.14 E-value=2e+02 Score=25.01 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhhHhhhhcccc
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs 74 (158)
+...+.+|...++++..|..++.
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~ 259 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYE 259 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
Done!