Query psy2914
Match_columns 158
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 20:51:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3trt_A Vimentin; cytoskeleton, 87.8 0.76 2.6E-05 30.7 4.4 48 52-99 22-70 (77)
2 2lf0_A Uncharacterized protein 81.4 3.5 0.00012 31.8 5.9 59 44-104 4-62 (123)
3 3vp9_A General transcriptional 67.3 2.5 8.5E-05 30.9 1.8 19 44-62 69-87 (92)
4 1ic2_A Tropomyosin alpha chain 61.2 10 0.00034 25.8 3.9 59 49-107 5-63 (81)
5 2yy0_A C-MYC-binding protein; 56.3 7.5 0.00026 25.3 2.5 24 50-73 19-42 (53)
6 3s4r_A Vimentin; alpha-helix, 50.4 7.3 0.00025 27.6 1.8 23 47-69 53-75 (93)
7 2eqb_B RAB guanine nucleotide 48.5 27 0.00092 25.6 4.6 56 45-100 7-62 (97)
8 3uul_A Utrophin; spectrin repe 47.5 57 0.0019 21.3 6.8 65 50-114 43-116 (118)
9 1aq5_A Matrilin-1, CMP, cartil 43.9 35 0.0012 22.2 4.2 31 59-99 14-44 (47)
10 1zxa_A CGMP-dependent protein 43.0 15 0.00052 25.3 2.4 17 51-67 40-56 (67)
11 1use_A VAsp, vasodilator-stimu 39.7 25 0.00085 22.9 2.9 25 43-67 7-32 (45)
12 2wg5_A General control protein 37.7 16 0.00056 26.1 2.0 37 48-84 12-48 (109)
13 3u1c_A Tropomyosin alpha-1 cha 36.3 42 0.0014 23.7 4.0 48 50-97 44-98 (101)
14 3iv1_A Tumor susceptibility ge 35.1 23 0.00078 25.1 2.4 52 37-95 1-52 (78)
15 1cun_A Protein (alpha spectrin 35.0 1E+02 0.0035 22.0 6.0 66 41-106 134-206 (213)
16 3pdy_A Plectin; cytoskeleton, 34.9 1.2E+02 0.004 22.7 6.5 67 40-108 32-104 (210)
17 3uun_A Dystrophin; triple heli 34.8 93 0.0032 20.1 6.3 59 50-108 43-108 (119)
18 2l2l_A Transcriptional repress 34.2 50 0.0017 21.3 3.6 25 42-67 1-25 (43)
19 3u1c_A Tropomyosin alpha-1 cha 33.7 55 0.0019 23.1 4.2 55 46-100 5-59 (101)
20 3gwk_C SAG1039, putative uncha 30.0 44 0.0015 21.8 3.0 26 52-77 24-49 (98)
21 3lay_A Zinc resistance-associa 29.6 1.7E+02 0.0058 22.7 6.8 33 52-84 87-119 (175)
22 3u59_A Tropomyosin beta chain; 28.0 71 0.0024 22.3 4.0 17 81-97 82-98 (101)
23 4emc_A Monopolin complex subun 27.7 39 0.0013 27.5 2.9 25 48-72 25-49 (190)
24 3zbh_A ESXA; unknown function, 27.6 45 0.0016 21.4 2.7 20 55-74 28-47 (99)
25 3ol1_A Vimentin; structural ge 27.6 45 0.0015 24.2 2.9 40 44-83 14-53 (119)
26 2cly_B ATP synthase D chain, m 27.5 68 0.0023 24.6 4.1 49 41-89 16-75 (160)
27 3tnu_B Keratin, type II cytosk 26.4 33 0.0011 24.9 2.0 56 46-108 32-91 (129)
28 3kbt_A Beta-I spectrin, spectr 25.9 2.2E+02 0.0076 21.7 6.9 68 41-108 32-106 (326)
29 3tnu_A Keratin, type I cytoske 25.5 25 0.00084 25.6 1.2 54 48-108 36-93 (131)
30 2qdq_A Talin-1; dimerisation d 24.9 80 0.0027 20.8 3.5 25 48-72 13-37 (50)
31 4i0x_A ESAT-6-like protein MAB 24.9 53 0.0018 21.9 2.7 49 40-88 37-85 (94)
32 3u59_A Tropomyosin beta chain; 24.3 1.5E+02 0.005 20.6 5.1 58 46-103 5-62 (101)
33 2odv_A Plectin 1, HD1; plakin 23.6 1.1E+02 0.0038 24.4 4.8 24 79-102 166-189 (235)
34 1lwu_C Fibrinogen gamma chain; 23.5 64 0.0022 27.5 3.6 46 48-93 10-55 (323)
35 2rjz_A PILO protein; structura 23.3 50 0.0017 24.5 2.5 35 50-84 15-49 (147)
36 1nkp_B MAX protein, MYC proto- 23.2 77 0.0026 21.1 3.3 13 52-64 49-61 (83)
37 2pih_A Protein YMCA; regulate 23.1 2E+02 0.0069 21.2 5.9 70 51-122 41-114 (151)
38 3csx_A Putative uncharacterize 22.8 2.1E+02 0.0071 20.3 5.6 47 48-94 20-66 (81)
39 1gax_A Valrs, valyl-tRNA synth 21.5 1.6E+02 0.0055 27.7 6.1 66 34-99 782-856 (862)
40 3nmd_A CGMP dependent protein 21.2 47 0.0016 23.2 1.9 23 52-74 42-64 (72)
41 3swk_A Vimentin; cytoskeleton, 20.9 31 0.0011 24.0 0.9 33 51-83 1-33 (86)
42 1nlw_A MAD protein, MAX dimeri 20.5 87 0.003 21.3 3.1 21 47-67 58-78 (80)
43 3m9b_A Proteasome-associated A 20.1 49 0.0017 27.7 2.1 37 47-83 72-108 (251)
No 1
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=87.76 E-value=0.76 Score=30.65 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=43.3
Q ss_pred HHHHHHHHHH-hhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 52 LRKLRRELVD-AQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 52 IRkLrRELe~-aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
++|-|+|++. ++.|+..|+.+...|..-+.+-...+..+...+|.|..
T Consensus 22 a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 22 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999987 89999999999999999999988899999999998864
No 2
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=81.39 E-value=3.5 Score=31.79 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=51.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhh
Q psy2914 44 PEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104 (158)
Q Consensus 44 ~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqK 104 (158)
..|....||..|.-.|+..+-|.+. .....++.+++.|++....++.++.+|-.....|
T Consensus 4 Mke~~K~Eiq~L~drLD~~~rKlaa--a~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 4 MKEVEKNEIKRLSDRLDAIRHQQAD--LSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHH--SCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678999999999999999998 6777899999999999999999999887766665
No 3
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=67.25 E-value=2.5 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q psy2914 44 PEERQSYELRKLRRELVDA 62 (158)
Q Consensus 44 ~EEk~~~EIRkLrRELe~a 62 (158)
.-++|+.||.+||+||+.-
T Consensus 69 mKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 69 MKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4567788899999999853
No 4
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=61.21 E-value=10 Score=25.80 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccc
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRS 107 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsE 107 (158)
...|.-|+.|.+.+++++..+..++..--.-...+|+.+..+..|++.|-.--+.-...
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577799999999999999998888777777889999999999999887655444333
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.29 E-value=7.5 Score=25.29 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhHhhhhccc
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQL 73 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQL 73 (158)
.++-+||+|++..|.||..|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888776653
No 6
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.40 E-value=7.3 Score=27.58 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhh
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTL 69 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~L 69 (158)
.++.+|+.||+.+++....-..|
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544443333
No 7
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.55 E-value=27 Score=25.63 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=39.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhH
Q psy2914 45 EERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVS 100 (158)
Q Consensus 45 EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~t 100 (158)
-|+...+|+.|..++.....++..|...|..-...-..-|+....+-+-|..||.+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556678888888888888888877777666666666677777666666666543
No 8
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=47.51 E-value=57 Score=21.34 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcc---cccccc----hhhhhhhhHHHHHHHHHhhhhHhhhhccch--hhhhhh
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQ---LNTNSH----VVSAFEQSLSNMTQRLQQLTVSAEEKLRSS--FSKAFS 114 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQ---Ls~Nah----lVaaFEQsL~nMT~RLq~Lt~taeqKdsEL--~lk~aq 114 (158)
.+...|.+|+..-+..|..+... |-..+| -.......|..|..|-..|...+..+...| .|..+|
T Consensus 43 ~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 43 ATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667899999999988877643 332233 345688899999999999999998887777 444433
No 9
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=43.93 E-value=35 Score=22.22 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=22.0
Q ss_pred HHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 59 LVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 59 Le~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
|-.+|.+|.. .+.++.|+|..||+||+.|-+
T Consensus 14 lv~FQ~~v~~----------~l~~Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 14 IVKFQTKVEE----------LINTLQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 4456666655 356667888899999998854
No 10
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.02 E-value=15 Score=25.29 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhhHh
Q psy2914 51 ELRKLRRELVDAQEKVQ 67 (158)
Q Consensus 51 EIRkLrRELe~aqekV~ 67 (158)
||+.||++|..+|+-+.
T Consensus 40 eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 40 EIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45555555555554444
No 11
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=39.66 E-value=25 Score=22.88 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=19.9
Q ss_pred ChhhhhhHH-HHHHHHHHHHhhhhHh
Q psy2914 43 TPEERQSYE-LRKLRRELVDAQEKVQ 67 (158)
Q Consensus 43 t~EEk~~~E-IRkLrRELe~aqekV~ 67 (158)
..-|++-.| ++.+|||++..++.|-
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EII 32 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEII 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777778 8999999999988763
No 12
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=37.67 E-value=16 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhh
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFE 84 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFE 84 (158)
.+.+++.|++++...+++|..|...=..-|.+++.++
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d 48 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILE 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEec
Confidence 3456999999999999999999888777777777765
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=36.34 E-value=42 Score=23.69 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHH-------HHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhh
Q psy2914 50 YELRKLRREL-------VDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 50 ~EIRkLrREL-------e~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~L 97 (158)
.||..|.|.+ +.+++.+.....+|..--.....=|....+++.|+|.|
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544 44444444433333332222333345566777777755
No 14
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=35.08 E-value=23 Score=25.08 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=28.7
Q ss_pred ccccccChhhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHH
Q psy2914 37 SSSIYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQ 95 (158)
Q Consensus 37 ~SSlYSt~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq 95 (158)
+||+.|.+|+|.- |+||..++.+|..+.+|-. |...|.+. -++|..|..||+
T Consensus 1 ~~SllSAVeDKLR---rrl~E~~~q~qaEl~sLrr---T~~EL~~G-~~KL~~mi~~l~ 52 (78)
T 3iv1_A 1 GSSLISAVSDKLR---WRMKEEMDRAQAELNALKR---TEEDLKKG-HQKLEEMVTRLD 52 (78)
T ss_dssp CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH---HHHHHHHHHHhHHHHHHHH---HHHHHHhh-hHHHHHHHHHHH
Confidence 4678888887743 4566666666666665432 11222211 345556666665
No 15
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=34.98 E-value=1e+02 Score=22.01 Aligned_cols=66 Identities=11% Similarity=0.240 Sum_probs=41.7
Q ss_pred ccChhhhhhHH---HHHHHHHHHHhhhhHhhhhcc----cccccchhhhhhhhHHHHHHHHHhhhhHhhhhcc
Q psy2914 41 YSTPEERQSYE---LRKLRRELVDAQEKVQTLSSQ----LNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLR 106 (158)
Q Consensus 41 YSt~EEk~~~E---IRkLrRELe~aqekV~~LTsQ----Ls~NahlVaaFEQsL~nMT~RLq~Lt~taeqKds 106 (158)
||...+..+.. ...+.++++..+..|..|... +..+..-.....+.+..+..|-..|...+..+..
T Consensus 134 ~g~~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~ 206 (213)
T 1cun_A 134 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKA 206 (213)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444333 455888888888888877655 1222223445677778888888888777766544
No 16
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=34.95 E-value=1.2e+02 Score=22.66 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=40.3
Q ss_pred cccChhhhhhHHHHH---HHHHHHHhhhhHhhhhccc---ccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 40 IYSTPEERQSYELRK---LRRELVDAQEKVQTLSSQL---NTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 40 lYSt~EEk~~~EIRk---LrRELe~aqekV~~LTsQL---s~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
=||.-..-.+..|+| |-++++.++.+|..|..+- ....+ ......|..+-.+-+.|...++.....|
T Consensus 32 d~G~Dl~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~--~~i~~rl~~l~~~~~~L~~~a~~R~~~L 104 (210)
T 3pdy_A 32 EWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATR--GAYRDCLGRLDLQYAKLLNSSKARLRSL 104 (210)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377766666655555 8899999999999887653 32222 2244445555555555555554444433
No 17
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=34.77 E-value=93 Score=20.14 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcc---cccccc----hhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQ---LNTNSH----VVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQ---Ls~Nah----lVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
.+...|.+|+..-+..|..+... |-..+| -.......|..+..|-..|...+..+...|
T Consensus 43 ~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (119)
T 3uun_A 43 HTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNL 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888999988888776553 322222 345678889999999999999888887766
No 18
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=34.19 E-value=50 Score=21.33 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=17.0
Q ss_pred cChhhhhhHHHHHHHHHHHHhhhhHh
Q psy2914 42 STPEERQSYELRKLRRELVDAQEKVQ 67 (158)
Q Consensus 42 St~EEk~~~EIRkLrRELe~aqekV~ 67 (158)
|+++||.+ -||+||.||-.-.-|.-
T Consensus 1 ~s~~ere~-~i~~LreeLR~EEaKLv 25 (43)
T 2l2l_A 1 GSPEERER-MIKQLKEELRLEEAKLV 25 (43)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 35666633 49999999977665543
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.70 E-value=55 Score=23.08 Aligned_cols=55 Identities=9% Similarity=0.186 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhH
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVS 100 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~t 100 (158)
+.....|.-|+-|.+.+++++..+-.++-.--.-...+|+.+..+..|++.|-.-
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455567789999999999999887776665556667888888888998877553
No 20
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.00 E-value=44 Score=21.76 Aligned_cols=26 Identities=4% Similarity=0.077 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhhHhhhhccccccc
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNS 77 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~Na 77 (158)
...++..+...+..|..|...-..-+
T Consensus 24 ~~~i~~~l~~L~~~~~~l~~~W~G~a 49 (98)
T 3gwk_C 24 SQQVTEVLNLLTQEQAVIDENWDGST 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBCSST
T ss_pred HHHHHHHHHHHHHHHHHHHcccCcHH
Confidence 33455555555555666655555544
No 21
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.58 E-value=1.7e+02 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccccchhhhhh
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFE 84 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~NahlVaaFE 84 (158)
+..||+++.+.+.++..|...=+.+..-|.+.-
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~ 119 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTASSPDTAKINAVA 119 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344666666777777776665444443333333
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.04 E-value=71 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=9.7
Q ss_pred hhhhhhHHHHHHHHHhh
Q psy2914 81 SAFEQSLSNMTQRLQQL 97 (158)
Q Consensus 81 aaFEQsL~nMT~RLq~L 97 (158)
..-|.....++.|+|.|
T Consensus 82 ~~AE~evasLnRriqll 98 (101)
T 3u59_A 82 TDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455556666666654
No 23
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.73 E-value=39 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcc
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQ 72 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQ 72 (158)
.++|++.|+.+|+..++.+..|-.|
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444
No 24
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=27.63 E-value=45 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhHhhhhcccc
Q psy2914 55 LRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 55 LrRELe~aqekV~~LTsQLs 74 (158)
|+..+...+..|..|...-.
T Consensus 28 i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 28 VTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 33333444444444444433
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=27.59 E-value=45 Score=24.15 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhh
Q psy2914 44 PEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAF 83 (158)
Q Consensus 44 ~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaF 83 (158)
....+..+|+.||+.+++....=..|-.++..---.++-|
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666788888888777665555555555443344444
No 26
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=27.48 E-value=68 Score=24.57 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=39.5
Q ss_pred ccChhhhhhHHHHHHHHHHHHhhhhHhhhhccc-----------ccccchhhhhhhhHHH
Q psy2914 41 YSTPEERQSYELRKLRRELVDAQEKVQTLSSQL-----------NTNSHVVSAFEQSLSN 89 (158)
Q Consensus 41 YSt~EEk~~~EIRkLrRELe~aqekV~~LTsQL-----------s~NahlVaaFEQsL~n 89 (158)
+..+-..+..++..||+.-+.++.+|..|-.+. -.|..||+-||+....
T Consensus 16 ~~~v~~~~~a~~~afK~~~d~~~~~v~~lpe~pp~IDwa~Yk~~l~~~~lVD~fek~y~s 75 (160)
T 2cly_B 16 GEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNA 75 (160)
T ss_dssp HTTSCGGGHHHHHHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHhCCchHHHHHHHHHHhc
Confidence 333556677889999999999999999988774 3589999999987654
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.37 E-value=33 Score=24.85 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH----HhhhhHhhhhccch
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL----QQLTVSAEEKLRSS 108 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL----q~Lt~taeqKdsEL 108 (158)
.....||..|||-++..+-.+..|-.+ .+.+|..|..+-.|. ..+...-...+.+|
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~-------~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQ-------CANLQNAIADAEQRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334567888888888888887776554 455666666655443 33444434444444
No 28
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=25.91 E-value=2.2e+02 Score=21.69 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=41.9
Q ss_pred ccChhhhhhHHHHH---HHHHHHHhhhhHhhhhcc---ccccc-chhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 41 YSTPEERQSYELRK---LRRELVDAQEKVQTLSSQ---LNTNS-HVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 41 YSt~EEk~~~EIRk---LrRELe~aqekV~~LTsQ---Ls~Na-hlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
||.-.+-.+..|+| +.+|++.++..|..|..+ |.... .-.....+.+..+-.|-+.|...++.+...|
T Consensus 32 ~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~R~~~L 106 (326)
T 3kbt_A 32 IPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKL 106 (326)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444444444444 788999999888877643 22222 2234566677777777777777777665555
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.52 E-value=25 Score=25.64 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH----HhhhhHhhhhccch
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL----QQLTVSAEEKLRSS 108 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL----q~Lt~taeqKdsEL 108 (158)
...||..|||-++..+-.+..|-.+ .+.+|..|..+-.|. ..+...-...+.+|
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~-------~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSM-------KASLENSLEETKGRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766665433 455666666655543 33333333444444
No 30
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=24.92 E-value=80 Score=20.83 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcc
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQ 72 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQ 72 (158)
.+.+|=++-|||+.|+.+...|-.+
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556999999999999998876443
No 31
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=24.86 E-value=53 Score=21.85 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=18.0
Q ss_pred cccChhhhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHH
Q psy2914 40 IYSTPEERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLS 88 (158)
Q Consensus 40 lYSt~EEk~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~ 88 (158)
|=|.+-+.++.-..+|+......++-...|...|..++.-++.=|+...
T Consensus 37 W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~aa~~y~~~d~~~a 85 (94)
T 4i0x_A 37 WKGSAADAYRSGWDEMQDGATKVWNALTDIASTLGSNAAAFHAQETSTA 85 (94)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGC--------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444333
No 32
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.28 E-value=1.5e+02 Score=20.59 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhh
Q psy2914 46 ERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEE 103 (158)
Q Consensus 46 Ek~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeq 103 (158)
+..-..|.-|+-|.+.+.+++..+-.++-.--.--..+|+.+..+..+++.|..-.+.
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4445557778999999999998887776655555666788888888888877665443
No 33
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=23.65 E-value=1.1e+02 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.3
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHhh
Q psy2914 79 VVSAFEQSLSNMTQRLQQLTVSAE 102 (158)
Q Consensus 79 lVaaFEQsL~nMT~RLq~Lt~tae 102 (158)
-+++||..|.-.-.|++.|...++
T Consensus 166 ~~e~ie~dL~~~e~~i~~l~~~a~ 189 (235)
T 2odv_A 166 RAGEVERDLDKADSMIRLLFNDVQ 189 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999998888776
No 34
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.54 E-value=64 Score=27.46 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHH
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQR 93 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~R 93 (158)
...||.+|..-+....++|..|..++..+..-+...++.+..+..+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555554443333334444333333
No 35
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=23.28 E-value=50 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhHhhhhcccccccchhhhhh
Q psy2914 50 YELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFE 84 (158)
Q Consensus 50 ~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFE 84 (158)
..+.+|+++++..+..+..+..||.....+.+..+
T Consensus 15 a~L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~ 49 (147)
T 2rjz_A 15 ANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLE 49 (147)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 45889999999999999999999997775554443
No 36
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.19 E-value=77 Score=21.09 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhhh
Q psy2914 52 LRKLRRELVDAQE 64 (158)
Q Consensus 52 IRkLrRELe~aqe 64 (158)
|+.|.++.+..+.
T Consensus 49 I~~L~~~~~~l~~ 61 (83)
T 1nkp_B 49 IQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444433333333
No 37
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=23.15 E-value=2e+02 Score=21.24 Aligned_cols=70 Identities=7% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch----hhhhhhhHhhhhhc
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS----FSKAFSRIVQIALK 122 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL----~lk~aq~~i~galn 122 (158)
|+.+|=+++...|..+.. .|....-+......+.+..+-..++..-...+-+..|. +|..-..+|..+|+
T Consensus 41 eaq~li~eF~~~Q~~~~~--~q~~Gk~~~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~I~~iI~~~I~ 114 (151)
T 2pih_A 41 KVSTIVNQIKALQKQAVN--LKHYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVT 114 (151)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHcCCccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577777888888877776 34444444556666777888888887777777776665 55555666655555
No 38
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=22.78 E-value=2.1e+02 Score=20.31 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhhhhhHHHHHHHH
Q psy2914 48 QSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRL 94 (158)
Q Consensus 48 ~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaFEQsL~nMT~RL 94 (158)
...||+||+|.--...-.+++|.--|.+|=.-+-..-|..+..-..+
T Consensus 20 LkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l 66 (81)
T 3csx_A 20 LKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFREL 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999988655544444444443333
No 39
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=21.48 E-value=1.6e+02 Score=27.70 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=47.0
Q ss_pred eccccccccChhhh--hhHHHHHHHHHHHHhhhhHhhhhccccc-------ccchhhhhhhhHHHHHHHHHhhhh
Q psy2914 34 ASVSSSIYSTPEER--QSYELRKLRRELVDAQEKVQTLSSQLNT-------NSHVVSAFEQSLSNMTQRLQQLTV 99 (158)
Q Consensus 34 vSs~SSlYSt~EEk--~~~EIRkLrRELe~aqekV~~LTsQLs~-------NahlVaaFEQsL~nMT~RLq~Lt~ 99 (158)
+.....+|-..+.. ...|+.||.+|++..+..+..+..+|+. -.+||+.-.+.|..+...+..|..
T Consensus 782 ~~~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~ 856 (862)
T 1gax_A 782 AMPRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIRE 856 (862)
T ss_dssp ECSSEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcEEEEEeccccCHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666654 3567888999999998888888887765 457787777777777777766543
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.16 E-value=47 Score=23.19 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhHhhhhcccc
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLN 74 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs 74 (158)
|+.|-.+|+...+.|..|.++|.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777766654
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.92 E-value=31 Score=23.96 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhHhhhhcccccccchhhhh
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAF 83 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQLs~NahlVaaF 83 (158)
||+.||+.+++....=..|-.++..-.-.+.-|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 466677777666655555555544433333333
No 42
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.52 E-value=87 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHhhhhHh
Q psy2914 47 RQSYELRKLRRELVDAQEKVQ 67 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~ 67 (158)
+...|+..|+++.+..+.++.
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455556665555555443
No 43
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.07 E-value=49 Score=27.73 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhcccccccchhhhh
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAF 83 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~LTsQLs~NahlVaaF 83 (158)
+...+++.+|+|++..++.+..|.+-=...+.+++..
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~ 108 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATH 108 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEc
Confidence 3455677788888888888888777666666666544
Done!