Query psy2914
Match_columns 158
No_of_seqs 54 out of 56
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 20:51:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 61.2 12 0.0009 22.7 5.8 50 49-98 3-59 (66)
2 d1u5pa1 a.7.1.1 (A:1662-1771) 52.9 21 0.0015 21.8 6.1 57 52-108 44-104 (110)
3 d1s35a2 a.7.1.1 (A:1169-1273) 42.4 32 0.0023 20.8 5.9 66 41-106 28-100 (105)
4 d1cuna2 a.7.1.1 (A:116-219) Sp 27.6 60 0.0043 19.5 5.6 67 41-107 25-98 (104)
5 d1qwka_ c.1.7.1 (A:) Hypotheti 23.6 21 0.0015 25.9 2.5 52 38-90 45-99 (312)
6 d1hcia4 a.7.1.1 (A:633-746) al 22.7 58 0.0042 20.2 4.3 60 49-108 43-106 (114)
7 d1st6a3 a.24.9.1 (A:253-371) V 22.6 1E+02 0.0075 21.2 6.0 49 47-95 64-116 (119)
8 d1owaa_ a.7.1.1 (A:) Spectrin 21.6 94 0.0068 19.6 6.1 57 51-107 93-153 (156)
9 d1wa8a1 a.25.3.1 (A:1-99) ESAT 20.3 36 0.0026 21.0 2.8 25 52-76 21-45 (99)
10 d1wrda1 a.7.8.1 (A:215-307) Ta 19.0 92 0.0067 19.8 4.7 55 52-108 3-66 (93)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=61.23 E-value=12 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhccccc-------ccchhhhhhhhHHHHHHHHHhhh
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQLNT-------NSHVVSAFEQSLSNMTQRLQQLT 98 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQLs~-------NahlVaaFEQsL~nMT~RLq~Lt 98 (158)
..|+.+|.++++..+..+..+...|+. -.+||+.--+.|..+...+..|.
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~ 59 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIR 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999998888874 45677777777777666665443
No 2
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=52.90 E-value=21 Score=21.78 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhhHhhhhcc----cccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQ----LNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQ----Ls~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
-..+.++++..+++|..|... +..+........+.+..|..|-..|....+.+...|
T Consensus 44 h~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~R~~~L 104 (110)
T d1u5pa1 44 HQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888888888888877654 344555677788899999999998888877765443
No 3
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.37 E-value=32 Score=20.85 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=42.6
Q ss_pred ccChhhhhhHHH---HHHHHHHHHhhhhHhhhhcc---c-ccccchhhhhhhhHHHHHHHHHhhhhHhhhhcc
Q psy2914 41 YSTPEERQSYEL---RKLRRELVDAQEKVQTLSSQ---L-NTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLR 106 (158)
Q Consensus 41 YSt~EEk~~~EI---RkLrRELe~aqekV~~LTsQ---L-s~NahlVaaFEQsL~nMT~RLq~Lt~taeqKds 106 (158)
||...+.....+ ..|.+++...+++|..|... | ..+-.-.+...+.+..+..|-+.|...++++..
T Consensus 28 ~g~dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~ 100 (105)
T d1s35a2 28 PPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASV 100 (105)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333 44899999999999887543 2 222223445677788888888888777776543
No 4
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.61 E-value=60 Score=19.48 Aligned_cols=67 Identities=10% Similarity=0.237 Sum_probs=44.1
Q ss_pred ccChhhhhhHH---HHHHHHHHHHhhhhHhhhhcc----cccccchhhhhhhhHHHHHHHHHhhhhHhhhhccc
Q psy2914 41 YSTPEERQSYE---LRKLRRELVDAQEKVQTLSSQ----LNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRS 107 (158)
Q Consensus 41 YSt~EEk~~~E---IRkLrRELe~aqekV~~LTsQ----Ls~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsE 107 (158)
||...+..... -+.+.+|+..-++.|..|... +..+..-.+...+.+..+..+.+.|....+.+...
T Consensus 25 ~g~d~~~v~~ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~R~~~ 98 (104)
T d1cuna2 25 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAK 98 (104)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333 344778888888888887665 34444455667778888888888887777766443
No 5
>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=23.64 E-value=21 Score=25.94 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=28.2
Q ss_pred cccccChhhhhhHHHHHHHHHHHHhhhhHhhhhc---ccccccchhhhhhhhHHHH
Q psy2914 38 SSIYSTPEERQSYELRKLRRELVDAQEKVQTLSS---QLNTNSHVVSAFEQSLSNM 90 (158)
Q Consensus 38 SSlYSt~EEk~~~EIRkLrRELe~aqekV~~LTs---QLs~NahlVaaFEQsL~nM 90 (158)
.-.||+ |+-.-.-++.+.++....+++|..-+. .-....++..+||+||..|
T Consensus 45 A~~Ygs-E~~lG~al~~~~~~~~~~r~~~~i~~k~~~~~~~~~~~~~~~~~SL~rL 99 (312)
T d1qwka_ 45 ASVYQN-EEAIGTAIKELLEEGVVKREELFITTKAWTHELAPGKLEGGLRESLKKL 99 (312)
T ss_dssp CGGGTC-HHHHHHHHHHHHHHTSCCGGGCEEEEEECTTTSSTTTHHHHHHHHHHHH
T ss_pred hhhhcC-HHHHHHHHHHhhhccccccccceeecccccccccchhHHHHHHHHhhhc
Confidence 345885 332222255555554445566543332 2223457788888888876
No 6
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.66 E-value=58 Score=20.17 Aligned_cols=60 Identities=5% Similarity=0.145 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhcc----cccccchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 49 SYELRKLRRELVDAQEKVQTLSSQ----LNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 49 ~~EIRkLrRELe~aqekV~~LTsQ----Ls~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
......|..||...+.+|..|... +..+-.-...+...+..+..+-+.|.....++..+|
T Consensus 43 l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~R~~~L 106 (114)
T d1hcia4 43 MNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEV 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566888888888887776543 112222234457778888888888887777776665
No 7
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.58 E-value=1e+02 Score=21.25 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHhhhhHhhhhccccccc----chhhhhhhhHHHHHHHHH
Q psy2914 47 RQSYELRKLRRELVDAQEKVQTLSSQLNTNS----HVVSAFEQSLSNMTQRLQ 95 (158)
Q Consensus 47 k~~~EIRkLrRELe~aqekV~~LTsQLs~Na----hlVaaFEQsL~nMT~RLq 95 (158)
++..||.+|+.|++..=+++..|-.+=-.|. ++-...-+.|..+.++++
T Consensus 64 ~~r~~Il~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~~v~ 116 (119)
T d1st6a3 64 KERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVE 116 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999888865555 333344455555555554
No 8
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.63 E-value=94 Score=19.64 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhhHhhhhcc---cc-cccchhhhhhhhHHHHHHHHHhhhhHhhhhccc
Q psy2914 51 ELRKLRRELVDAQEKVQTLSSQ---LN-TNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRS 107 (158)
Q Consensus 51 EIRkLrRELe~aqekV~~LTsQ---Ls-~NahlVaaFEQsL~nMT~RLq~Lt~taeqKdsE 107 (158)
+.+.|.+|+...+..|..+... |- .+...-......|..|-.|-+.|....+.+...
T Consensus 93 ~h~~l~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~W~~L~~~~~~R~~~ 153 (156)
T d1owaa_ 93 KHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQ 153 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777777777777766544 32 233344556778888888888888887776543
No 9
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.26 E-value=36 Score=20.97 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhHhhhhcccccc
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNTN 76 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~N 76 (158)
...|+..|...+..|..|...-..-
T Consensus 21 ~~~l~~~l~~l~~~v~~l~~~W~G~ 45 (99)
T d1wa8a1 21 SGDLKTQIDQVESTAGSLQGQWRGA 45 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556666666677777777665543
No 10
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.02 E-value=92 Score=19.77 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhhHhhhhccccc----c-----cchhhhhhhhHHHHHHHHHhhhhHhhhhccch
Q psy2914 52 LRKLRRELVDAQEKVQTLSSQLNT----N-----SHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS 108 (158)
Q Consensus 52 IRkLrRELe~aqekV~~LTsQLs~----N-----ahlVaaFEQsL~nMT~RLq~Lt~taeqKdsEL 108 (158)
|.||+.||+..+..|.-|.-=|+. + ..++.-+=+....|-.|++.|....+ |.|+
T Consensus 3 ~~kl~~eLe~v~~n~~lL~eML~~~~p~~~~~~d~eli~eL~~~C~~~q~~i~~li~~~~--dee~ 66 (93)
T d1wrda1 3 IGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIA--NEQL 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC--CHHH
Confidence 789999999999998766544432 1 12333333456667778887776653 5666
Done!