RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2914
(158 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-05
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 23/140 (16%)
Query: 2 KSQSVMHSPRNSPFLSKVNSKDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVD 61
+ P S S + E+ G + S+S+ T E+ Q Y + K L
Sbjct: 309 RCYEAY--PNTSLPPSILEDSLENNEGVPSPMLSISNL---TQEQVQDY-VNKTNSHL-P 361
Query: 62 AQEKVQTLSSQLNT-NSHVVSAFEQSLSNMTQRLQQLTVSAE-EKLRSSFSKAFSRIVQI 119
A ++V+ S +N + VVS QSL + L++ + ++ R FS+ R ++
Sbjct: 362 AGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKF 416
Query: 120 ALK---------SPRLQEAA 130
+ + S L A+
Sbjct: 417 SNRFLPVASPFHSHLLVPAS 436
Score = 31.2 bits (70), Expect = 0.16
Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 32/152 (21%)
Query: 12 NSPFLSKVNSKDEDVHGSAMSLASVSSSIYSTPEE--RQSYELRKLRRELVDAQEKVQTL 69
+ +L + D+H A L + + +E + R + + D +
Sbjct: 92 ENCYL-----EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 70 SSQLNTNSHVVSAF-----------E-QSLSNM-TQRLQQLTVSAEEKL------RSSFS 110
+ N+ +V+ F E + L + L + E L
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 111 KAFSRIVQIA--LKSPRLQEAANSSSKL-TAP 139
K F++ + I L++P L + P
Sbjct: 207 KVFTQGLNILEWLENP---SNTPDKDYLLSIP 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 1e-04
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 53/172 (30%)
Query: 7 MHSPRNSPF------LSKVNSKDED---VHGSAM------SLA-SVSSSIYSTPEERQSY 50
+ R P+ L ++ + + G + +A V S + + +
Sbjct: 129 YNVSRLQPYLKLRQALLEL--RPAKNVLIDG--VLGSGKTWVALDVCLS--YKVQCKMDF 182
Query: 51 E-----LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKL 105
+ L+ E +Q L Q++ N S S+ + ++ S + +L
Sbjct: 183 KIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWT-------SRSDHSSNIKLRIHSIQAEL 234
Query: 106 RSSFSKAFSRIVQIAL------KSPRLQEAANSSSK--LTAPKPSESTGDAN 149
R S+ + L ++ + A N S K LT T
Sbjct: 235 RRLLK---SKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-------TRFKQ 276
Score = 38.3 bits (88), Expect = 5e-04
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 53 RKLRRE--LVDAQEKVQTLSSQLNT-NSHVV---SAFEQSLSNMTQRLQQLTVSAEEKLR 106
+K+R + +A + QL ++ +E+ ++ + L + EE L
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK----IEENLI 560
Query: 107 SSFSKAFSRIVQIALKSPR---LQEAANSSSK 135
S ++ +++IAL + +EA +
Sbjct: 561 CS---KYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 35.2 bits (80), Expect = 0.007
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 35/139 (25%)
Query: 14 PFLSKVNSKD-EDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVDAQEKV--QTLS 70
F+ + KD +D+ S +S + I S + L L+ QE++ + +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVE 84
Query: 71 SQLNTN---------------SHVVSAFEQS---LSNMTQRLQQLTVSAEEKLRSSFSKA 112
L N S + + + L N Q + VS +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK----- 139
Query: 113 FSRIVQIALKSPRLQEAAN 131
++ AL L+ A N
Sbjct: 140 ----LRQALL--ELRPAKN 152
Score = 34.1 bits (77), Expect = 0.015
Identities = 14/112 (12%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 19 VNSKDEDVHGSAMSLASVSSSIYSTPEERQSYELRKLRRELVD-AQEKVQTLSSQ-LNTN 76
+ ++ + V L++ +++ S + +++ L+ + Q L + L TN
Sbjct: 270 LTTRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 77 SHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQE 128
+S +S+ + +KL + + + L+ ++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-----VLEPAEYRK 373
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.78
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 8/25 (32%)
Query: 120 ALKSPRLQEAANSSSKLTAPK--PS 142
ALK +LQ +S KL A P+
Sbjct: 21 ALK--KLQ----ASLKLYADDSAPA 39
Score = 26.8 bits (58), Expect = 2.8
Identities = 4/31 (12%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 2 KSQSV--------MHSPRNSPFLSKVNSKDE 24
+ Q++ +++ ++P L+ + + E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-IKATME 47
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299,
PSI-2, structure initiative; HET: MSE GOL; 2.23A
{Sinorhizobium meliloti}
Length = 304
Score = 28.5 bits (64), Expect = 0.89
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 41 YSTPEERQSY--ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFE 84
Y +R+ Y L KL+ ELV Q +Q T V++ FE
Sbjct: 53 YKKKLDREEYEETLTKLQIELVKVQFWMQ------ATGKRVMAVFE 92
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 26.9 bits (60), Expect = 3.1
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 41 YSTPEERQSY--ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFE 84
++ +Y +L + L + +V+ FE
Sbjct: 267 LGQYLDKDAYKEQLAAEQARLAGLIRDKR------FRQHSLVAVFE 306
Score = 26.5 bits (59), Expect = 4.9
Identities = 7/24 (29%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 46 ERQSYE--LRKLRRELVDAQEKVQ 67
++ +YE + +LR L++AQ +++
Sbjct: 14 DKDTYEKAVIELREALLEAQFELK 37
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB:
4ado_A
Length = 222
Score = 26.5 bits (58), Expect = 3.9
Identities = 9/68 (13%), Positives = 21/68 (30%)
Query: 45 EERQSYELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEK 104
+ QS + + ++ L E L+ + + + + +K
Sbjct: 43 KVIQSETYNDINEIFGHIDDDIEESLKVLMNIRLSNKEIEAILNKFLEYVVPFELPSPQK 102
Query: 105 LRSSFSKA 112
L+ F K
Sbjct: 103 LQKVFKKV 110
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 26.7 bits (58), Expect = 4.0
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 5/141 (3%)
Query: 8 HSPRNSP-FLSKVNSKDEDVH-GSAMSLASVSSSIYSTPEERQSYELRKLRRELVDA--Q 63
H R P F + + SV + + + SY +RK RE+V+A
Sbjct: 3 HMERAGPSFGQQRQQQQPQQQKQQQRDQDSVEAWLDDHWDFTFSYFVRKATREMVNAWFA 62
Query: 64 EKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSS-FSKAFSRIVQIALK 122
E+V T+ + L + + + K+ +S F + IV +
Sbjct: 63 ERVHTIPVCKEGIRGHTESCSCPLQQSPRADNSVPGTPTRKISASEFDRPLRPIVVKDSE 122
Query: 123 SPRLQEAANSSSKLTAPKPSE 143
+ + + P
Sbjct: 123 GTVSFLSDSEKKEQMPLTPPR 143
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 26.6 bits (58), Expect = 4.3
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 51 ELRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFEQSLSNMTQRLQQLTVSAEEKLRSSFS 110
EL KL RE + +EKV + L T S E +S L+ L S +
Sbjct: 134 ELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISP-----SDLSDIKGSVLHSRHT 188
Query: 111 KAFSRIVQIALKSPRLQEAANSSSKLTAP 139
+ ++ I RL+ ++ A
Sbjct: 189 ELKEKLRSINQGLDRLRRVSHQGYSTEAE 217
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology,
MCSG, structural genomics, midwest center for S
genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter
aurescens}
Length = 289
Score = 25.4 bits (56), Expect = 9.7
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 28 GSAMSLASVS-SSIYSTPEERQSYE--LRKLRRELVDAQEKVQTLSSQLNTNSHVVSAFE 84
GS SLA V S + + L L + QEK+ N ++ +
Sbjct: 23 GSGFSLAGVDPESTPGYTGVKADGKALLAAQDARLAELQEKLFAEGKFGNPKR-LLLILQ 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.303 0.115 0.286
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,930,315
Number of extensions: 95102
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 38
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.5 bits)