RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2914
         (158 letters)



>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 145

 Score = 23.7 bits (51), Expect = 9.7
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 83  FEQSLSNMTQRLQQLTVSAEEKLRSSFSKAFSRIVQIALKSPRLQEAANSSSKLTAPKPS 142
           F Q   +    +  L  S+E  L       F+   Q   ++ RL +  +         PS
Sbjct: 76  FGQWADSRANTVYGLGFSSEHHLS-----KFAEKFQEFKEAARLAKEKSQEKMELTSTPS 130

Query: 143 ESTGDANGKVPTSQQ 157
           + +   + + P + +
Sbjct: 131 QESAGGDLQSPLTPE 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.303    0.115    0.286 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,494
Number of extensions: 16198
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 8
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (22.9 bits)