Query psy2915
Match_columns 883
No_of_seqs 317 out of 2569
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 20:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 5.1E-73 1.1E-77 661.9 42.0 452 2-485 21-548 (746)
2 KOG1061|consensus 100.0 5E-65 1.1E-69 566.6 35.0 453 1-487 1-532 (734)
3 PTZ00429 beta-adaptin; Provisi 100.0 6.3E-59 1.4E-63 543.5 42.9 389 488-883 47-485 (746)
4 KOG1060|consensus 100.0 1.6E-59 3.4E-64 515.5 34.2 435 9-485 31-573 (968)
5 KOG1062|consensus 100.0 1.3E-55 2.9E-60 488.2 29.6 430 13-484 32-582 (866)
6 KOG1061|consensus 100.0 3.8E-54 8.3E-59 479.6 27.8 391 489-883 29-467 (734)
7 PF01602 Adaptin_N: Adaptin N 100.0 1.8E-53 3.9E-58 501.7 27.1 430 14-483 5-524 (526)
8 KOG1077|consensus 100.0 2.2E-51 4.7E-56 445.8 33.2 433 12-484 34-588 (938)
9 KOG1062|consensus 100.0 1.3E-49 2.9E-54 440.6 32.6 395 468-871 28-497 (866)
10 KOG1060|consensus 100.0 2.8E-49 6E-54 434.9 29.1 386 477-880 40-508 (968)
11 PF01602 Adaptin_N: Adaptin N 100.0 7.3E-47 1.6E-51 445.5 30.5 383 488-882 21-460 (526)
12 KOG1059|consensus 100.0 9.5E-46 2.1E-50 403.9 29.7 384 491-883 54-504 (877)
13 COG5096 Vesicle coat complex, 100.0 6.1E-44 1.3E-48 406.9 34.0 439 11-484 16-563 (757)
14 KOG1077|consensus 100.0 1.4E-43 3E-48 385.2 32.0 376 489-873 54-513 (938)
15 KOG1059|consensus 100.0 1.5E-42 3.2E-47 379.1 28.3 434 14-482 37-576 (877)
16 KOG1058|consensus 100.0 2.5E-36 5.4E-41 331.3 28.5 355 15-405 22-408 (948)
17 COG5096 Vesicle coat complex, 100.0 1.5E-35 3.3E-40 338.3 28.5 312 489-814 35-355 (757)
18 KOG1058|consensus 100.0 2.7E-35 5.9E-40 323.2 23.9 368 489-878 36-472 (948)
19 KOG1078|consensus 99.9 1.1E-26 2.3E-31 258.3 23.8 436 4-482 12-531 (865)
20 COG5240 SEC21 Vesicle coat com 99.9 3.7E-24 8E-29 229.2 24.5 430 14-482 23-554 (898)
21 KOG1078|consensus 99.9 6.9E-24 1.5E-28 236.0 23.7 365 488-872 38-442 (865)
22 COG5240 SEC21 Vesicle coat com 99.9 1.1E-19 2.3E-24 195.3 24.1 359 489-866 40-439 (898)
23 PLN03200 cellulose synthase-in 99.8 2.8E-15 6.2E-20 188.5 51.6 701 12-814 12-866 (2102)
24 KOG2023|consensus 99.8 2.2E-15 4.8E-20 165.3 34.3 533 54-774 18-593 (885)
25 PLN03200 cellulose synthase-in 99.7 2.9E-13 6.3E-18 170.7 54.1 702 62-869 28-860 (2102)
26 KOG1824|consensus 99.7 1.2E-12 2.6E-17 149.0 46.3 664 163-849 344-1151(1233)
27 KOG2171|consensus 99.6 8.9E-12 1.9E-16 146.6 43.2 509 117-733 5-553 (1075)
28 KOG2171|consensus 99.6 2.1E-10 4.5E-15 135.3 50.3 696 116-855 118-987 (1075)
29 PRK13800 putative oxidoreducta 99.6 5.1E-13 1.1E-17 165.3 27.8 286 131-645 609-895 (897)
30 KOG2023|consensus 99.5 2.9E-10 6.3E-15 125.7 37.0 686 13-870 10-776 (885)
31 PRK09687 putative lyase; Provi 99.4 1.1E-11 2.4E-16 131.9 23.1 251 512-805 26-279 (280)
32 PRK09687 putative lyase; Provi 99.4 2.3E-11 5.1E-16 129.4 23.3 250 418-724 26-277 (280)
33 PRK13800 putative oxidoreducta 99.4 1.1E-10 2.4E-15 144.7 28.1 271 418-768 624-895 (897)
34 KOG1241|consensus 99.3 1.5E-07 3.3E-12 106.5 47.4 522 121-750 61-644 (859)
35 KOG1824|consensus 99.2 3.9E-07 8.5E-12 105.0 43.3 683 121-872 10-851 (1233)
36 COG5215 KAP95 Karyopherin (imp 99.0 8.8E-06 1.9E-10 89.4 38.5 421 299-781 148-720 (858)
37 KOG0213|consensus 99.0 4.6E-05 1E-09 86.2 44.1 610 117-783 477-1153(1172)
38 KOG0414|consensus 98.9 5E-06 1.1E-10 98.8 35.8 154 512-670 922-1082(1251)
39 KOG1241|consensus 98.9 3.8E-05 8.3E-10 87.6 40.8 428 121-649 7-477 (859)
40 COG5181 HSH155 U2 snRNP splice 98.9 4.3E-05 9.2E-10 84.8 39.3 567 118-732 283-915 (975)
41 KOG0213|consensus 98.9 6.7E-06 1.5E-10 92.7 33.2 428 298-733 413-958 (1172)
42 KOG0211|consensus 98.8 9.8E-06 2.1E-10 95.8 35.9 555 119-773 85-665 (759)
43 COG5181 HSH155 U2 snRNP splice 98.8 2.2E-06 4.9E-11 94.6 25.4 341 147-616 600-953 (975)
44 KOG0211|consensus 98.8 1E-06 2.2E-11 104.0 24.5 387 453-869 160-586 (759)
45 KOG1020|consensus 98.7 0.00055 1.2E-08 83.8 43.4 103 121-225 821-927 (1692)
46 PF10508 Proteasom_PSMB: Prote 98.7 4.5E-05 9.8E-10 88.7 33.8 175 121-350 43-231 (503)
47 PF10508 Proteasom_PSMB: Prote 98.7 1.2E-05 2.6E-10 93.5 29.1 317 491-810 59-422 (503)
48 KOG0166|consensus 98.6 9.1E-05 2E-09 83.1 33.0 257 511-771 111-392 (514)
49 TIGR02270 conserved hypothetic 98.6 3.7E-06 7.9E-11 94.0 21.3 211 511-774 88-298 (410)
50 PF12717 Cnd1: non-SMC mitotic 98.6 1.4E-06 3.1E-11 86.7 15.8 145 559-710 1-156 (178)
51 COG5098 Chromosome condensatio 98.5 0.00039 8.4E-09 78.4 33.9 144 506-651 888-1039(1128)
52 KOG1242|consensus 98.5 6.5E-05 1.4E-09 84.7 27.5 414 161-650 27-484 (569)
53 KOG0166|consensus 98.5 5.1E-05 1.1E-09 85.1 26.4 336 420-772 71-436 (514)
54 KOG1242|consensus 98.5 0.00045 9.8E-09 78.1 33.4 446 332-823 28-498 (569)
55 COG5064 SRP1 Karyopherin (impo 98.4 3E-05 6.6E-10 80.4 20.8 113 113-225 68-192 (526)
56 KOG2062|consensus 98.4 0.0028 6.1E-08 72.5 37.5 264 434-723 398-690 (929)
57 KOG0212|consensus 98.4 0.00013 2.7E-09 80.8 25.9 352 514-871 5-408 (675)
58 KOG0212|consensus 98.4 0.00067 1.4E-08 75.3 30.5 342 116-479 42-440 (675)
59 PF13646 HEAT_2: HEAT repeats; 98.4 1.6E-06 3.4E-11 75.5 8.7 86 118-215 1-88 (88)
60 KOG1020|consensus 98.4 0.00067 1.4E-08 83.1 32.6 496 50-617 817-1412(1692)
61 PF13646 HEAT_2: HEAT repeats; 98.3 2E-06 4.3E-11 74.9 8.4 85 549-645 2-88 (88)
62 COG1413 FOG: HEAT repeat [Ener 98.2 0.00014 3E-09 80.6 22.7 246 416-727 44-302 (335)
63 KOG0915|consensus 98.2 0.043 9.3E-07 68.1 44.3 445 121-650 823-1307(1702)
64 KOG1943|consensus 98.2 0.0031 6.7E-08 75.3 32.9 515 145-679 335-909 (1133)
65 COG1413 FOG: HEAT repeat [Ener 98.2 0.00065 1.4E-08 75.3 26.5 254 330-650 52-305 (335)
66 KOG0915|consensus 98.2 0.0026 5.7E-08 78.2 32.4 323 426-781 968-1353(1702)
67 KOG4224|consensus 98.2 0.00032 6.9E-09 73.7 21.1 185 117-385 209-405 (550)
68 TIGR02270 conserved hypothetic 98.1 0.00038 8.2E-09 78.1 23.0 241 510-808 55-296 (410)
69 KOG2259|consensus 98.1 0.0012 2.6E-08 74.5 25.8 175 624-812 377-561 (823)
70 PF12717 Cnd1: non-SMC mitotic 98.1 1.2E-05 2.5E-10 80.2 8.9 91 129-220 1-93 (178)
71 COG5215 KAP95 Karyopherin (imp 98.0 0.029 6.2E-07 62.7 33.9 287 553-846 270-600 (858)
72 KOG1248|consensus 98.0 0.095 2.1E-06 63.8 49.6 235 591-833 664-927 (1176)
73 KOG0567|consensus 98.0 0.00034 7.3E-09 70.9 16.9 231 332-648 47-279 (289)
74 KOG2025|consensus 97.9 0.036 7.8E-07 63.6 32.9 206 356-608 85-292 (892)
75 KOG1991|consensus 97.9 0.091 2E-06 62.8 36.9 117 559-675 431-559 (1010)
76 KOG0414|consensus 97.9 0.14 2.9E-06 62.4 40.4 96 712-814 935-1033(1251)
77 KOG4224|consensus 97.9 0.00055 1.2E-08 71.9 16.4 300 511-814 87-411 (550)
78 COG5064 SRP1 Karyopherin (impo 97.7 0.0014 3.1E-08 68.3 16.2 205 547-755 158-380 (526)
79 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.00015 3.3E-09 63.7 7.7 72 575-647 21-94 (97)
80 PF04826 Arm_2: Armadillo-like 97.6 0.0012 2.5E-08 69.2 15.1 172 557-733 24-209 (254)
81 KOG2259|consensus 97.6 0.0017 3.6E-08 73.5 16.5 302 334-702 211-521 (823)
82 PF05918 API5: Apoptosis inhib 97.6 0.032 6.9E-07 64.2 27.1 134 511-649 25-162 (556)
83 KOG1240|consensus 97.6 0.0034 7.5E-08 75.5 19.6 152 576-731 573-727 (1431)
84 PF12348 CLASP_N: CLASP N term 97.6 0.00038 8.1E-09 72.5 10.7 138 515-652 59-209 (228)
85 KOG1240|consensus 97.6 0.0084 1.8E-07 72.3 22.4 273 334-654 436-730 (1431)
86 KOG2062|consensus 97.5 0.33 7.1E-06 56.3 40.5 126 514-649 524-653 (929)
87 COG5098 Chromosome condensatio 97.5 0.011 2.4E-07 67.1 20.9 132 521-652 274-418 (1128)
88 PF12460 MMS19_C: RNAPII trans 97.4 0.21 4.5E-06 57.0 31.3 228 524-785 163-407 (415)
89 PF12348 CLASP_N: CLASP N term 97.4 0.004 8.6E-08 64.8 14.8 185 590-778 16-212 (228)
90 cd00020 ARM Armadillo/beta-cat 97.3 0.00048 1E-08 63.3 6.9 102 117-218 8-119 (120)
91 cd00020 ARM Armadillo/beta-cat 97.3 0.00048 1E-08 63.3 6.9 102 547-648 8-119 (120)
92 KOG1943|consensus 97.3 0.45 9.7E-06 57.7 32.5 233 351-606 336-607 (1133)
93 KOG0946|consensus 97.3 0.2 4.3E-06 58.5 28.5 141 57-225 31-201 (970)
94 PF04826 Arm_2: Armadillo-like 97.3 0.01 2.3E-07 62.1 17.3 179 586-772 17-205 (254)
95 smart00638 LPD_N Lipoprotein N 97.3 0.015 3.2E-07 69.5 20.4 97 546-648 446-544 (574)
96 COG5218 YCG1 Chromosome conden 97.3 0.53 1.2E-05 53.2 31.1 219 354-621 89-308 (885)
97 KOG1992|consensus 97.2 0.81 1.8E-05 53.9 35.3 69 542-610 452-527 (960)
98 KOG2025|consensus 97.2 0.59 1.3E-05 54.1 29.6 91 550-642 89-186 (892)
99 KOG4535|consensus 97.1 0.079 1.7E-06 58.2 21.3 133 57-221 20-181 (728)
100 KOG0168|consensus 97.0 0.46 1E-05 56.0 27.1 104 121-224 172-289 (1051)
101 PF02985 HEAT: HEAT repeat; I 97.0 0.0011 2.5E-08 44.9 3.8 29 582-610 1-29 (31)
102 KOG1248|consensus 97.0 1.7 3.7E-05 53.5 48.4 224 553-780 661-907 (1176)
103 KOG0413|consensus 96.9 0.86 1.9E-05 54.4 28.5 126 524-650 946-1074(1529)
104 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0045 9.7E-08 54.5 8.0 72 145-217 21-94 (97)
105 PF13513 HEAT_EZ: HEAT-like re 96.9 0.0027 5.8E-08 49.6 5.9 49 560-608 1-55 (55)
106 PF01347 Vitellogenin_N: Lipop 96.8 0.025 5.4E-07 68.3 16.5 100 543-648 487-588 (618)
107 PF05804 KAP: Kinesin-associat 96.8 0.4 8.7E-06 57.4 25.3 67 152-218 291-359 (708)
108 PF05918 API5: Apoptosis inhib 96.7 0.63 1.4E-05 53.8 25.4 133 50-217 24-160 (556)
109 KOG1949|consensus 96.7 0.15 3.2E-06 58.6 19.8 92 574-671 166-266 (1005)
110 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0013 2.9E-08 51.3 2.9 53 595-647 1-55 (55)
111 KOG2274|consensus 96.5 2.9 6.2E-05 50.1 32.4 188 578-776 446-650 (1005)
112 COG5116 RPN2 26S proteasome re 96.5 0.75 1.6E-05 51.9 23.0 88 555-649 561-650 (926)
113 KOG0567|consensus 96.4 0.2 4.4E-06 51.3 17.0 91 548-650 156-250 (289)
114 KOG0168|consensus 96.4 0.47 1E-05 55.9 21.8 254 548-814 169-446 (1051)
115 PF02985 HEAT: HEAT repeat; I 96.3 0.0055 1.2E-07 41.5 3.8 29 152-180 1-29 (31)
116 PF12719 Cnd3: Nuclear condens 96.2 0.28 6.1E-06 53.2 18.3 106 545-650 26-144 (298)
117 KOG2274|consensus 96.2 4.3 9.4E-05 48.7 54.8 223 542-775 445-692 (1005)
118 KOG4413|consensus 96.0 1.7 3.8E-05 45.8 21.7 193 356-575 128-333 (524)
119 KOG1293|consensus 96.0 4.2 9.1E-05 47.1 29.2 98 553-650 426-534 (678)
120 KOG4653|consensus 95.8 0.35 7.6E-06 57.1 17.4 206 389-648 742-963 (982)
121 KOG4413|consensus 95.7 3.4 7.3E-05 43.7 25.4 76 145-220 76-158 (524)
122 COG5218 YCG1 Chromosome conden 95.5 6.3 0.00014 45.1 32.0 103 584-690 533-637 (885)
123 KOG1820|consensus 95.3 0.4 8.6E-06 58.2 16.1 196 576-776 248-447 (815)
124 KOG1525|consensus 95.3 3.8 8.2E-05 52.2 25.0 29 701-729 377-405 (1266)
125 KOG0946|consensus 95.2 5 0.00011 47.5 23.4 279 591-872 33-402 (970)
126 KOG1949|consensus 95.2 0.12 2.7E-06 59.2 10.5 175 546-728 174-369 (1005)
127 KOG0891|consensus 95.2 12 0.00027 50.8 29.9 247 133-389 461-767 (2341)
128 PF13251 DUF4042: Domain of un 95.1 0.43 9.4E-06 47.2 13.1 155 597-775 2-177 (182)
129 PF05804 KAP: Kinesin-associat 95.1 11 0.00024 45.6 36.9 234 510-754 291-543 (708)
130 PF14764 SPG48: AP-5 complex s 95.1 0.55 1.2E-05 52.7 15.2 125 683-814 10-147 (459)
131 KOG1525|consensus 94.9 16 0.00035 46.8 40.0 181 441-637 248-441 (1266)
132 PF08167 RIX1: rRNA processing 94.8 0.65 1.4E-05 45.5 13.4 125 619-782 24-153 (165)
133 PF01347 Vitellogenin_N: Lipop 94.5 2.1 4.6E-05 51.7 19.9 113 518-644 499-617 (618)
134 PF12830 Nipped-B_C: Sister ch 94.4 0.58 1.3E-05 46.9 12.4 101 548-649 10-122 (187)
135 PF12719 Cnd3: Nuclear condens 94.4 3.1 6.6E-05 45.2 18.9 143 332-484 38-186 (298)
136 smart00638 LPD_N Lipoprotein N 94.4 0.26 5.6E-06 58.9 11.5 93 121-219 451-545 (574)
137 PF10363 DUF2435: Protein of u 94.3 0.32 6.9E-06 42.4 8.7 65 588-652 10-75 (92)
138 KOG1517|consensus 94.1 1.2 2.6E-05 53.9 15.5 186 410-612 511-734 (1387)
139 KOG0413|consensus 94.1 3.1 6.8E-05 49.9 18.5 103 547-649 577-685 (1529)
140 PF12231 Rif1_N: Rap1-interact 94.0 13 0.00027 41.8 23.9 212 561-772 107-352 (372)
141 KOG2005|consensus 94.0 1.7 3.6E-05 50.2 15.7 84 560-650 622-705 (878)
142 COG5116 RPN2 26S proteasome re 93.5 1.5 3.3E-05 49.5 14.2 33 371-405 426-458 (926)
143 PF10363 DUF2435: Protein of u 93.3 0.26 5.6E-06 43.0 6.4 65 120-184 7-76 (92)
144 KOG2956|consensus 93.3 3.8 8.3E-05 45.7 16.6 182 542-732 283-480 (516)
145 KOG2032|consensus 93.3 10 0.00022 42.8 19.9 110 353-481 255-369 (533)
146 PF05004 IFRD: Interferon-rela 93.1 12 0.00025 40.9 20.4 57 558-614 198-261 (309)
147 PF12460 MMS19_C: RNAPII trans 93.1 19 0.00042 41.0 30.4 206 411-652 185-397 (415)
148 KOG1992|consensus 93.1 25 0.00054 42.2 34.5 126 51-199 39-174 (960)
149 KOG1517|consensus 93.1 1.7 3.7E-05 52.7 14.5 137 509-650 512-672 (1387)
150 PLN03076 ARF guanine nucleotid 92.9 38 0.00082 45.5 27.6 49 578-626 1344-1392(1780)
151 KOG1822|consensus 92.7 44 0.00095 44.0 29.9 130 95-224 851-993 (2067)
152 KOG4653|consensus 92.6 4.6 0.0001 48.2 16.9 180 153-351 729-919 (982)
153 KOG2160|consensus 92.6 1.2 2.6E-05 48.0 11.5 136 60-221 94-242 (342)
154 PF14500 MMS19_N: Dos2-interac 92.5 7.6 0.00016 41.1 17.3 41 574-614 201-241 (262)
155 KOG2032|consensus 92.4 14 0.00031 41.6 19.6 241 123-384 265-530 (533)
156 PF14664 RICTOR_N: Rapamycin-i 92.1 4.5 9.8E-05 45.1 15.8 99 121-221 75-178 (371)
157 KOG4500|consensus 91.8 25 0.00053 39.1 25.2 173 553-728 278-474 (604)
158 KOG4535|consensus 91.7 26 0.00057 39.3 28.4 57 161-219 6-76 (728)
159 KOG1293|consensus 91.7 32 0.0007 40.2 33.4 209 554-779 339-568 (678)
160 cd00256 VATPase_H VATPase_H, r 91.6 8.3 0.00018 43.6 17.3 255 622-881 55-395 (429)
161 PF12765 Cohesin_HEAT: HEAT re 91.6 0.23 5.1E-06 36.2 3.4 40 604-643 2-41 (42)
162 PF08506 Cse1: Cse1; InterPro 91.4 14 0.00031 41.2 18.8 49 557-605 319-370 (370)
163 KOG2005|consensus 91.4 35 0.00076 40.0 22.3 114 95-212 394-509 (878)
164 PF08713 DNA_alkylation: DNA a 91.3 1.2 2.7E-05 45.5 9.8 130 514-652 56-187 (213)
165 KOG2956|consensus 91.1 9.7 0.00021 42.6 16.4 184 591-784 297-490 (516)
166 PF12765 Cohesin_HEAT: HEAT re 90.8 0.31 6.6E-06 35.6 3.3 40 174-213 2-41 (42)
167 KOG1820|consensus 90.8 14 0.00031 45.2 19.1 141 290-446 298-445 (815)
168 PF11935 DUF3453: Domain of un 90.8 3.4 7.5E-05 43.1 12.5 147 589-752 1-161 (239)
169 KOG1822|consensus 90.7 10 0.00022 49.4 18.1 261 542-810 872-1191(2067)
170 KOG2759|consensus 90.6 8.4 0.00018 42.5 15.3 68 582-649 367-438 (442)
171 PF14500 MMS19_N: Dos2-interac 90.5 13 0.00028 39.3 16.7 64 156-220 4-70 (262)
172 cd00256 VATPase_H VATPase_H, r 90.4 36 0.00079 38.6 21.8 67 582-648 354-424 (429)
173 KOG2160|consensus 89.9 1.6 3.4E-05 47.2 9.1 105 586-691 129-239 (342)
174 PF13001 Ecm29: Proteasome sta 89.7 11 0.00025 44.0 17.0 204 429-649 218-443 (501)
175 PF08713 DNA_alkylation: DNA a 89.6 1.1 2.3E-05 45.9 7.6 133 53-224 55-189 (213)
176 COG5110 RPN1 26S proteasome re 89.4 8.4 0.00018 43.7 14.3 268 351-650 408-706 (881)
177 PF03224 V-ATPase_H_N: V-ATPas 89.3 20 0.00042 39.2 17.7 134 631-768 68-223 (312)
178 PF14664 RICTOR_N: Rapamycin-i 89.3 12 0.00025 41.9 15.8 132 517-650 33-177 (371)
179 PF05004 IFRD: Interferon-rela 88.8 40 0.00086 36.7 19.2 183 587-774 49-259 (309)
180 KOG1243|consensus 88.7 3.4 7.4E-05 48.4 11.3 140 510-649 331-476 (690)
181 KOG2933|consensus 88.6 5.6 0.00012 42.1 11.7 120 527-650 71-200 (334)
182 PF12830 Nipped-B_C: Sister ch 88.3 0.61 1.3E-05 46.7 4.6 67 121-187 13-81 (187)
183 KOG1967|consensus 88.3 71 0.0015 39.1 28.1 132 511-643 869-1018(1030)
184 PF11864 DUF3384: Domain of un 88.2 57 0.0012 37.8 30.0 64 558-621 268-342 (464)
185 PF13251 DUF4042: Domain of un 88.1 3.8 8.1E-05 40.7 9.8 146 167-317 2-177 (182)
186 PF12074 DUF3554: Domain of un 87.9 35 0.00075 37.7 18.7 85 339-444 5-90 (339)
187 PF12530 DUF3730: Protein of u 87.9 37 0.0008 35.3 17.8 161 555-724 10-184 (234)
188 KOG1967|consensus 87.1 7 0.00015 47.1 12.6 189 551-747 801-1002(1030)
189 PF05536 Neurochondrin: Neuroc 86.6 35 0.00075 40.3 18.4 134 558-694 69-215 (543)
190 KOG4500|consensus 84.5 74 0.0016 35.5 32.0 141 510-650 316-476 (604)
191 COG5656 SXM1 Importin, protein 84.2 1E+02 0.0022 36.9 35.8 116 559-674 429-553 (970)
192 KOG1243|consensus 84.2 3 6.6E-05 48.8 7.8 165 27-219 288-476 (690)
193 PF12530 DUF3730: Protein of u 83.7 59 0.0013 33.8 18.8 116 533-650 25-152 (234)
194 PF08167 RIX1: rRNA processing 83.4 9 0.0002 37.5 9.9 131 145-324 19-153 (165)
195 PF12074 DUF3554: Domain of un 83.1 45 0.00096 36.9 16.5 38 743-780 203-243 (339)
196 KOG2213|consensus 82.6 83 0.0018 34.7 23.3 72 520-591 35-106 (460)
197 PF03224 V-ATPase_H_N: V-ATPas 82.1 82 0.0018 34.3 18.8 65 586-650 110-180 (312)
198 KOG0392|consensus 81.8 12 0.00026 46.8 11.7 112 581-731 816-927 (1549)
199 PF08506 Cse1: Cse1; InterPro 81.6 9.3 0.0002 42.6 10.3 51 674-724 319-370 (370)
200 KOG2759|consensus 81.3 96 0.0021 34.6 20.1 72 699-772 365-438 (442)
201 KOG4524|consensus 80.7 64 0.0014 39.7 16.9 51 303-353 566-621 (1014)
202 KOG2933|consensus 80.1 11 0.00023 40.1 9.3 135 509-648 88-233 (334)
203 smart00567 EZ_HEAT E-Z type HE 79.9 2.4 5.1E-05 28.2 3.1 30 595-632 1-30 (30)
204 cd03569 VHS_Hrs_Vps27p VHS dom 79.6 14 0.00029 35.2 9.3 70 543-612 38-116 (142)
205 cd03561 VHS VHS domain family; 79.0 14 0.0003 34.7 9.2 77 538-614 29-116 (133)
206 PF11698 V-ATPase_H_C: V-ATPas 78.1 5.8 0.00013 36.2 5.9 57 593-649 56-115 (119)
207 PF11701 UNC45-central: Myosin 78.0 8.5 0.00018 37.3 7.5 132 592-724 16-154 (157)
208 KOG2973|consensus 77.8 1E+02 0.0023 33.0 21.3 62 591-652 254-318 (353)
209 PF00790 VHS: VHS domain; Int 77.5 16 0.00034 34.7 9.1 80 533-612 29-120 (140)
210 smart00567 EZ_HEAT E-Z type HE 76.9 3.6 7.8E-05 27.3 3.3 30 165-202 1-30 (30)
211 cd03568 VHS_STAM VHS domain fa 76.8 20 0.00042 34.2 9.4 74 539-612 30-112 (144)
212 PF00514 Arm: Armadillo/beta-c 76.5 4.4 9.6E-05 29.1 3.9 28 582-609 13-40 (41)
213 KOG2213|consensus 75.3 1.4E+02 0.003 33.1 21.1 70 297-366 36-106 (460)
214 cd03572 ENTH_epsin_related ENT 74.8 12 0.00027 34.3 7.2 42 575-616 32-73 (122)
215 KOG2038|consensus 74.6 1.6E+02 0.0034 35.5 17.3 74 150-225 303-376 (988)
216 KOG2137|consensus 74.4 1.3E+02 0.0027 36.1 16.7 111 541-652 384-499 (700)
217 PF01603 B56: Protein phosphat 74.3 1E+02 0.0023 35.0 16.2 200 591-802 100-320 (409)
218 KOG2973|consensus 73.8 52 0.0011 35.1 12.1 99 549-650 6-112 (353)
219 PF03130 HEAT_PBS: PBS lyase H 72.5 5.7 0.00012 25.8 3.2 25 562-586 1-25 (27)
220 cd06561 AlkD_like A new struct 72.3 13 0.00028 37.4 7.6 67 550-616 109-176 (197)
221 cd03561 VHS VHS domain family; 71.6 28 0.00061 32.6 9.1 76 577-652 33-115 (133)
222 cd03567 VHS_GGA VHS domain fam 70.9 34 0.00075 32.3 9.4 75 539-613 31-119 (139)
223 cd06561 AlkD_like A new struct 70.4 8.8 0.00019 38.6 5.9 67 154-223 108-174 (197)
224 PF11865 DUF3385: Domain of un 70.4 58 0.0013 31.6 11.2 32 741-772 125-157 (160)
225 PF00514 Arm: Armadillo/beta-c 70.4 8.1 0.00018 27.7 4.1 31 618-648 10-40 (41)
226 PF11698 V-ATPase_H_C: V-ATPas 68.8 10 0.00022 34.7 5.1 66 153-218 45-114 (119)
227 KOG4199|consensus 68.5 1.8E+02 0.0039 31.6 21.1 262 115-396 76-370 (461)
228 smart00288 VHS Domain present 67.9 51 0.0011 30.9 10.0 80 533-612 24-113 (133)
229 cd03568 VHS_STAM VHS domain fa 66.6 43 0.00094 31.9 9.3 74 578-651 34-112 (144)
230 PF03130 HEAT_PBS: PBS lyase H 66.3 8.1 0.00017 25.0 2.9 25 132-156 1-25 (27)
231 PF14838 INTS5_C: Integrator c 66.2 3E+02 0.0065 33.3 27.5 59 623-681 313-374 (696)
232 PF14225 MOR2-PAG1_C: Cell mor 65.4 1.9E+02 0.0041 30.6 18.7 65 663-727 188-255 (262)
233 PF11865 DUF3385: Domain of un 65.1 85 0.0018 30.5 11.2 33 193-225 13-46 (160)
234 PF08569 Mo25: Mo25-like; Int 65.0 2.2E+02 0.0048 31.3 24.2 98 582-694 210-313 (335)
235 PF14631 FancD2: Fanconi anaem 64.2 4.8E+02 0.01 34.9 28.0 135 576-714 430-568 (1426)
236 KOG2549|consensus 64.2 44 0.00096 38.4 10.0 77 573-649 280-370 (576)
237 cd08050 TAF6 TATA Binding Prot 63.6 1.2E+02 0.0027 33.4 13.6 143 506-649 175-340 (343)
238 PF10521 DUF2454: Protein of u 62.8 1.6E+02 0.0034 31.6 13.9 74 576-649 114-203 (282)
239 PF11935 DUF3453: Domain of un 61.1 1.2E+02 0.0026 31.6 12.3 71 628-728 1-71 (239)
240 COG5537 IRR1 Cohesin [Cell div 61.1 1.4E+02 0.0031 34.8 13.2 141 585-727 279-423 (740)
241 PF14764 SPG48: AP-5 complex s 60.9 1.5E+02 0.0032 33.9 13.3 59 427-485 379-448 (459)
242 PF13001 Ecm29: Proteasome sta 60.5 43 0.00093 39.2 9.7 100 121-220 324-444 (501)
243 PF10521 DUF2454: Protein of u 60.1 1.1E+02 0.0025 32.7 12.2 76 145-220 113-204 (282)
244 KOG2137|consensus 60.1 1.4E+02 0.003 35.7 13.3 204 593-807 285-495 (700)
245 PF10274 ParcG: Parkin co-regu 59.1 91 0.002 30.9 10.1 68 582-649 39-109 (183)
246 cd03569 VHS_Hrs_Vps27p VHS dom 58.8 1.7E+02 0.0036 27.8 12.2 98 600-736 23-121 (142)
247 PF08389 Xpo1: Exportin 1-like 58.3 1.2E+02 0.0026 28.4 11.0 52 595-649 2-54 (148)
248 KOG4199|consensus 57.9 2.8E+02 0.0061 30.2 20.5 242 560-842 89-370 (461)
249 PF07571 DUF1546: Protein of u 57.6 32 0.0007 29.9 6.1 59 591-649 16-78 (92)
250 PF07539 DRIM: Down-regulated 56.3 58 0.0013 30.9 8.0 48 580-632 16-63 (141)
251 KOG1789|consensus 55.9 5.3E+02 0.011 32.7 19.7 125 289-414 1774-1911(2235)
252 KOG2011|consensus 55.7 1.4E+02 0.003 37.6 13.0 143 580-726 281-432 (1048)
253 PF00790 VHS: VHS domain; Int 55.5 46 0.00099 31.5 7.3 80 69-178 25-116 (140)
254 PF10274 ParcG: Parkin co-regu 55.1 63 0.0014 32.0 8.3 80 610-690 28-107 (183)
255 KOG2011|consensus 55.1 26 0.00056 43.7 6.8 105 111-217 284-397 (1048)
256 PF11701 UNC45-central: Myosin 54.6 36 0.00078 32.9 6.6 112 558-673 17-137 (157)
257 PF08623 TIP120: TATA-binding 54.3 26 0.00056 34.3 5.4 60 592-652 38-97 (169)
258 KOG1991|consensus 53.7 5.4E+02 0.012 32.2 39.6 136 591-728 369-531 (1010)
259 cd03567 VHS_GGA VHS domain fam 52.1 1.5E+02 0.0033 28.0 10.1 49 600-650 20-68 (139)
260 KOG0392|consensus 49.3 75 0.0016 40.2 9.2 105 546-650 816-926 (1549)
261 PF12231 Rif1_N: Rap1-interact 49.1 4.2E+02 0.0092 29.6 21.8 66 283-348 130-202 (372)
262 cd03565 VHS_Tom1 VHS domain fa 48.3 80 0.0017 29.9 7.6 27 297-323 51-77 (141)
263 KOG1932|consensus 47.7 2.2E+02 0.0047 35.9 12.7 54 553-607 873-930 (1180)
264 PHA02855 anti-apoptotic membra 47.4 61 0.0013 31.0 6.4 80 783-865 80-163 (180)
265 smart00185 ARM Armadillo/beta- 47.3 26 0.00056 24.5 3.3 27 582-608 13-39 (41)
266 cd07064 AlkD_like_1 A new stru 45.6 3.4E+02 0.0074 27.5 14.1 66 583-652 117-182 (208)
267 cd03572 ENTH_epsin_related ENT 44.3 57 0.0012 30.1 5.7 38 329-366 46-92 (122)
268 smart00288 VHS Domain present 44.2 1.5E+02 0.0032 27.8 8.8 74 576-649 32-111 (133)
269 PF14676 FANCI_S2: FANCI solen 43.8 3E+02 0.0065 26.6 10.9 65 409-475 89-153 (158)
270 PF11707 Npa1: Ribosome 60S bi 43.2 4.8E+02 0.01 28.6 16.6 50 295-351 36-86 (330)
271 PF14663 RasGEF_N_2: Rapamycin 42.6 50 0.0011 30.1 5.1 31 191-221 9-39 (115)
272 PF08569 Mo25: Mo25-like; Int 41.8 5.2E+02 0.011 28.5 19.0 113 587-735 170-288 (335)
273 PF01603 B56: Protein phosphat 41.1 5.9E+02 0.013 28.9 19.6 76 702-780 299-378 (409)
274 PF04388 Hamartin: Hamartin pr 41.0 2.1E+02 0.0046 34.8 11.5 148 622-787 6-155 (668)
275 cd07064 AlkD_like_1 A new stru 41.0 69 0.0015 32.6 6.4 69 549-617 118-186 (208)
276 PF08623 TIP120: TATA-binding 40.9 35 0.00076 33.4 4.0 61 162-223 38-98 (169)
277 cd00872 PI3Ka_I Phosphoinositi 40.6 2.5E+02 0.0054 27.6 9.9 109 15-162 4-116 (171)
278 PF03378 CAS_CSE1: CAS/CSE pro 40.6 3E+02 0.0064 31.6 12.1 170 550-727 34-230 (435)
279 smart00185 ARM Armadillo/beta- 39.4 46 0.001 23.2 3.6 29 620-648 12-40 (41)
280 cd00197 VHS_ENTH_ANTH VHS, ENT 38.8 1.8E+02 0.0039 26.2 8.3 16 631-646 97-112 (115)
281 PF12397 U3snoRNP10: U3 small 38.6 3.1E+02 0.0066 24.9 10.2 71 577-650 2-75 (121)
282 PF06685 DUF1186: Protein of u 38.5 4.9E+02 0.011 27.3 13.9 125 628-776 50-184 (249)
283 KOG0891|consensus 38.2 1.4E+03 0.03 32.4 35.0 83 563-645 461-554 (2341)
284 PF11838 ERAP1_C: ERAP1-like C 37.9 5.4E+02 0.012 27.6 21.5 126 539-675 141-274 (324)
285 KOG2149|consensus 37.8 1.6E+02 0.0035 32.8 8.8 65 585-649 62-128 (393)
286 COG5110 RPN1 26S proteasome re 37.5 92 0.002 35.8 7.0 90 126-219 614-705 (881)
287 PF07571 DUF1546: Protein of u 37.2 89 0.0019 27.2 5.6 59 161-219 16-78 (92)
288 COG5231 VMA13 Vacuolar H+-ATPa 37.2 5.8E+02 0.012 27.7 13.5 70 699-772 355-428 (432)
289 KOG2038|consensus 36.5 8.8E+02 0.019 29.6 18.7 124 520-648 281-408 (988)
290 KOG1048|consensus 36.5 8.7E+02 0.019 29.6 24.1 101 549-649 569-684 (717)
291 PF14961 BROMI: Broad-minded p 36.3 2.6E+02 0.0057 35.7 11.1 68 549-616 164-237 (1296)
292 cd03565 VHS_Tom1 VHS domain fa 35.7 3E+02 0.0066 26.0 9.5 73 540-612 32-117 (141)
293 PF14668 RICTOR_V: Rapamycin-i 35.5 69 0.0015 26.6 4.3 54 168-221 4-60 (73)
294 cd00870 PI3Ka_III Phosphoinosi 34.4 3.2E+02 0.007 26.7 9.6 112 13-163 9-124 (166)
295 PF08389 Xpo1: Exportin 1-like 34.3 77 0.0017 29.7 5.4 53 165-220 2-55 (148)
296 cd00197 VHS_ENTH_ANTH VHS, ENT 34.2 3.2E+02 0.0068 24.5 9.1 64 586-651 5-68 (115)
297 KOG1993|consensus 33.5 9.9E+02 0.021 29.4 22.0 129 333-480 539-685 (978)
298 PF04078 Rcd1: Cell differenti 32.7 6.2E+02 0.013 26.7 11.9 25 585-609 193-217 (262)
299 COG4912 Predicted DNA alkylati 32.3 79 0.0017 32.1 5.0 67 550-616 122-189 (222)
300 KOG1566|consensus 32.0 6.9E+02 0.015 27.1 21.2 94 586-694 217-316 (342)
301 KOG2153|consensus 30.4 9.2E+02 0.02 28.8 13.5 85 639-727 304-390 (704)
302 PF00613 PI3Ka: Phosphoinositi 30.2 1.3E+02 0.0027 30.1 6.2 75 512-592 48-122 (184)
303 KOG1988|consensus 29.9 1.1E+03 0.024 29.2 14.4 101 515-617 30-138 (970)
304 PF12397 U3snoRNP10: U3 small 29.9 2.3E+02 0.005 25.8 7.5 67 544-612 4-76 (121)
305 PF00613 PI3Ka: Phosphoinositi 29.6 4E+02 0.0087 26.5 9.6 111 14-163 9-123 (184)
306 PF12333 Ipi1_N: Rix1 complex 29.4 1.1E+02 0.0023 27.3 4.9 51 578-628 8-58 (102)
307 PF05536 Neurochondrin: Neuroc 29.3 1E+03 0.022 28.2 32.4 97 292-389 11-131 (543)
308 PF08064 UME: UME (NUC010) dom 28.5 2.7E+02 0.0059 24.9 7.5 60 426-485 26-85 (107)
309 PF14663 RasGEF_N_2: Rapamycin 27.8 1.1E+02 0.0025 27.7 5.0 29 622-650 10-38 (115)
310 PRK12495 hypothetical protein; 26.9 57 0.0012 32.9 2.9 44 1-51 1-44 (226)
311 KOG2021|consensus 26.4 1.3E+03 0.027 28.4 31.6 79 576-656 188-267 (980)
312 cd08050 TAF6 TATA Binding Prot 25.8 9.3E+02 0.02 26.6 12.9 135 584-727 181-338 (343)
313 COG5656 SXM1 Importin, protein 25.6 1.3E+03 0.028 28.2 32.8 93 128-220 428-529 (970)
314 PF08064 UME: UME (NUC010) dom 25.3 4.9E+02 0.011 23.2 8.9 56 593-650 27-84 (107)
315 PF07539 DRIM: Down-regulated 24.9 1.3E+02 0.0027 28.6 4.8 49 149-202 15-63 (141)
316 KOG0803|consensus 24.7 1.4E+03 0.029 30.3 15.0 99 551-649 46-153 (1312)
317 PF08161 NUC173: NUC173 domain 24.3 7.4E+02 0.016 24.9 13.7 32 739-770 166-197 (198)
318 KOG1848|consensus 23.9 5.1E+02 0.011 33.8 10.6 51 150-200 996-1050(1610)
319 PF12031 DUF3518: Domain of un 23.7 3.1E+02 0.0066 28.6 7.5 72 334-405 137-228 (257)
320 KOG2199|consensus 23.6 7.9E+02 0.017 27.4 10.8 76 530-605 29-113 (462)
321 KOG1848|consensus 23.5 6.8E+02 0.015 32.7 11.6 53 578-630 994-1050(1610)
322 PF09324 DUF1981: Domain of un 23.5 3E+02 0.0065 23.5 6.5 66 150-216 16-85 (86)
323 cd00872 PI3Ka_I Phosphoinositi 23.4 2.6E+02 0.0057 27.5 6.8 67 520-592 50-116 (171)
324 KOG0905|consensus 23.4 8.7E+02 0.019 31.3 12.2 74 521-600 868-947 (1639)
325 COG4912 Predicted DNA alkylati 23.3 1.2E+02 0.0027 30.8 4.6 32 191-222 155-186 (222)
326 PF12333 Ipi1_N: Rix1 complex 23.3 1.5E+02 0.0032 26.3 4.7 50 148-197 8-57 (102)
327 cd00864 PI3Ka Phosphoinositide 21.9 5.9E+02 0.013 24.4 8.9 98 27-163 20-117 (152)
328 PF12726 SEN1_N: SEN1 N termin 21.9 1.5E+03 0.034 27.8 33.1 106 545-650 440-554 (727)
329 PF02854 MIF4G: MIF4G domain; 21.6 4.5E+02 0.0097 25.8 8.7 58 341-398 3-60 (209)
330 cd00871 PI4Ka Phosphoinositide 21.5 4.1E+02 0.0088 26.3 7.7 59 535-598 64-123 (175)
331 PF04869 Uso1_p115_head: Uso1 21.3 3.4E+02 0.0075 29.5 7.9 116 422-540 63-187 (312)
332 PLN03076 ARF guanine nucleotid 21.2 2.3E+03 0.049 29.5 25.3 126 523-649 1111-1253(1780)
333 KOG2199|consensus 20.9 4.5E+02 0.0097 29.3 8.4 111 557-670 23-138 (462)
334 KOG1993|consensus 20.7 1.6E+03 0.036 27.6 36.1 127 561-689 466-598 (978)
335 COG5369 Uncharacterized conser 20.6 7.4E+02 0.016 28.9 10.2 144 585-728 435-593 (743)
336 smart00145 PI3Ka Phosphoinosit 20.6 3.3E+02 0.0072 27.1 7.1 65 523-593 58-122 (184)
337 PF06685 DUF1186: Protein of u 20.6 1E+03 0.022 25.0 18.7 41 353-404 2-42 (249)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=5.1e-73 Score=661.85 Aligned_cols=452 Identities=40% Similarity=0.681 Sum_probs=419.1
Q ss_pred CCCccccccCcCcHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCC
Q psy2915 2 TDSKYFTTTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHP 81 (883)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~ 81 (883)
++++||+++++||++|||+.|++++.++|+++++|+|+.|++|+|++++||+|+++++++|+++|||+|+|+++|++.+|
T Consensus 21 ~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 21 TGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred CccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcC
Q psy2915 82 DMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 161 (883)
Q Consensus 82 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~ 161 (883)
|+++|++|+ ++||++|+||.+|++|||+||+|+.+++++++.+.|++++.
T Consensus 101 elalLaINt------------------------------l~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~ 150 (746)
T PTZ00429 101 EKALLAVNT------------------------------FLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVA 150 (746)
T ss_pred HHHHHHHHH------------------------------HHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Confidence 999999999 99999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc--------cccccccC
Q psy2915 162 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR--------NLSSRKKQ 233 (883)
Q Consensus 162 d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~--------~l~~~~~~ 233 (883)
|++|||||+|++|+.|+|+.+|+.+.+.+|.+.|.++|+|+||+|+.+|+.+|.++.+..|... .++..++.
T Consensus 151 D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e 230 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPE 230 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998878899999999999999999999999999987765432 23333332
Q ss_pred -CCCcHHHHHh-hccccccC-------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc
Q psy2915 234 -ICWNLPYLMN-LSVIYPAW-------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS 296 (883)
Q Consensus 234 -~~w~q~~~l~-l~~~~~~~-------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~ 296 (883)
.+|+|+.+|+ +.+|.|.+ ++++.|++| +++++++.+....+ ....+++..++..+++++++
T Consensus 231 ~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~--~~~~~~~~~rl~~pLv~L~s 308 (746)
T PTZ00429 231 CNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS--QELIERCTVRVNTALLTLSR 308 (746)
T ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC--HHHHHHHHHHHHHHHHHhhC
Confidence 3799999999 99999876 678999999 99999998876543 24566777888899999988
Q ss_pred CChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHH
Q psy2915 297 SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKA 376 (883)
Q Consensus 297 ~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~a 376 (883)
+++|+||++|++|..+++.+|.+|.+|++.|+|+.+||.+||+.||++|+.+||++|++.|++||.+|+++.|.+|++++
T Consensus 309 s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 309 RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEV 388 (746)
T ss_pred CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhH---------------------------------------------------
Q psy2915 377 VRAIGRCAIKVEQSAERCVSTLLDLIQTK--------------------------------------------------- 405 (883)
Q Consensus 377 i~aI~~la~k~~~~~~~~v~~Ll~lL~~~--------------------------------------------------- 405 (883)
|++||.||.++|...+||++.|++++.+.
T Consensus 389 IrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGE 468 (746)
T PTZ00429 389 VRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGE 468 (746)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHh
Confidence 99999999999999999999999877642
Q ss_pred hhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCc
Q psy2915 406 YAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 406 ~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~ 485 (883)
|++.+++++++++.+++.|.+|+.+||.++|++++|+|..+|++.++.+..+++++..+.+|+||||||.+||++++.++
T Consensus 469 y~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~ 548 (746)
T PTZ00429 469 YCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGI 548 (746)
T ss_pred hHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC
Confidence 55667778899999999999999999999999999999999988999999999998776679999999999999998874
No 2
>KOG1061|consensus
Probab=100.00 E-value=5e-65 Score=566.59 Aligned_cols=453 Identities=69% Similarity=1.038 Sum_probs=426.4
Q ss_pred CCCCccccccCcCcHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccC
Q psy2915 1 MTDSKYFTTTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSH 80 (883)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~ 80 (883)
|+|+|||.+++++|+.++|+.|.+..+++|+++++|+|..|+.|+|+|.+|++|+++|++.|.+.|||+|+|+++|+..+
T Consensus 1 M~d~k~F~~~~k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~ 80 (734)
T KOG1061|consen 1 MSDSKYFSTDKKGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK 80 (734)
T ss_pred CCCccccCcchhhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccC
Confidence 89999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhc
Q psy2915 81 PDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 160 (883)
Q Consensus 81 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l 160 (883)
|+++++++|+ +.+|+.|+||.+|++|+|++|.++.+.+.+++..++.+++
T Consensus 81 P~~a~~avnt------------------------------~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l 130 (734)
T KOG1061|consen 81 PDLAILAVNT------------------------------FLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCL 130 (734)
T ss_pred chHHHhhhhh------------------------------hhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhc
Confidence 9999999999 9999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc--cccccc-------
Q psy2915 161 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR--NLSSRK------- 231 (883)
Q Consensus 161 ~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~--~l~~~~------- 231 (883)
+|.+|||||+|+.|+.++|+.+|+...+.++.+.|+.++.|+||.|+.+|+.+|.+|.+.+|... .+.+.+
T Consensus 131 ~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a 210 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA 210 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887422 111111
Q ss_pred --cCCCCcHHHHHh-hccccccC-------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHH
Q psy2915 232 --KQICWNLPYLMN-LSVIYPAW-------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVT 293 (883)
Q Consensus 232 --~~~~w~q~~~l~-l~~~~~~~-------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 293 (883)
.-.+|+|+.+|+ +.+|.|++ ++++.|++| ++++++++.....+. +...+..+..++++.
T Consensus 211 l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~---~~~~~~~K~~~pl~t 287 (734)
T KOG1061|consen 211 LNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ---VNELLFKKVAPPLVT 287 (734)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH---HHHHHHHHhccccee
Confidence 112599999999 99999986 689999998 999999988776653 556788999999999
Q ss_pred hhcCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHH
Q psy2915 294 LLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFV 373 (883)
Q Consensus 294 lL~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r 373 (883)
++++.+++.|+||++++.+.+..|.++..++..|+|.++||.|||..|++++..+++.+|+.+++.||..|+.+.|.+|.
T Consensus 288 lls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fv 367 (734)
T KOG1061|consen 288 LLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFV 367 (734)
T ss_pred eecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH------------------------------------------------
Q psy2915 374 RKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK------------------------------------------------ 405 (883)
Q Consensus 374 ~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~------------------------------------------------ 405 (883)
+++|++||.+|.|+++. ..|++.++++++..
T Consensus 368 rkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiW 446 (734)
T KOG1061|consen 368 RKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIW 446 (734)
T ss_pred HHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHH
Confidence 99999999999999887 89999999999854
Q ss_pred ----hhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhh
Q psy2915 406 ----YAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLL 481 (883)
Q Consensus 406 ----~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll 481 (883)
|++.+++++++++.+.+.+.+|..+||.++|+|..|+|..+|.+.+++++.++.+|..|++|+|+|||+.+||+++
T Consensus 447 ilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 447 ILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred HHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHh
Confidence 7788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchh
Q psy2915 482 STGNTF 487 (883)
Q Consensus 482 ~~~~~~ 487 (883)
+.++..
T Consensus 527 s~~~~~ 532 (734)
T KOG1061|consen 527 SEDPLI 532 (734)
T ss_pred hcCHHH
Confidence 977643
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=6.3e-59 Score=543.53 Aligned_cols=389 Identities=40% Similarity=0.718 Sum_probs=361.7
Q ss_pred hhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHH
Q psy2915 488 YILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAV 567 (883)
Q Consensus 488 ~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL 567 (883)
...+++++|+++.|+.|+|++++|++|+++++++|...||++|+|+..|++.+||++.+++|+|+||++|+||.+|++||
T Consensus 47 ~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLAL 126 (746)
T PTZ00429 47 YRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAV 126 (746)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy2915 568 RTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM 647 (883)
Q Consensus 568 ~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i 647 (883)
|+||+++.+++.+.+++.|++++.|++|||||+|+.|++|+|+.+|+.+.+.+|.+.+.++|.|+|++|+.+|+.+|.++
T Consensus 127 RtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 127 RTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred HhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHh
Q psy2915 648 NEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 648 ~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~ 727 (883)
....|+ .+.+.+..+.++++.+++.+||+|+.+|++|.+|.|.++++...+++.+.+.++|+|++|+++|+++++++
T Consensus 207 ~~~~~~---~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 207 NDYGSE---KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred HHhCch---hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 976553 36788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhc
Q psy2915 728 MEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLA 807 (883)
Q Consensus 728 ~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~ 807 (883)
.++. ++++.+++..++++++++|++++||+||++|+++..+++.+|++|.+|++.|||+++|+.+||++||++|+.||
T Consensus 284 ~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La 361 (746)
T PTZ00429 284 ASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV 361 (746)
T ss_pred cCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence 6433 24677888889999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhh------------------------------------------------hhHHHHHHHHHHHHHHhhCCCchHH
Q psy2915 808 SQANIAQ------------------------------------------------VNYVVQEAIVVIKDIFRKYPNKYET 839 (883)
Q Consensus 808 ~~~N~~~------------------------------------------------~~~~~~e~i~~i~~l~~~~p~~~~~ 839 (883)
|++|++. ...++.|+++.++++.++||+.+
T Consensus 362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~-- 439 (746)
T PTZ00429 362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELL-- 439 (746)
T ss_pred CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHH--
Confidence 9999976 11245678889999999999875
Q ss_pred HHHHHHhhc--ccCCcHHHHHHHHHHHhcCcCccCCHHHHHHhhhC
Q psy2915 840 IISTLCENL--DTLDEPEARASMIWIIGEYAERIDNADELLESFLE 883 (883)
Q Consensus 840 ~i~~L~~~l--~~i~~~~~~~~~~w~lgey~~~~~~~~~~~~~~~e 883 (883)
++..|++.+ +.+++|++|++++|++|||++.+++++++++.|++
T Consensus 440 il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~ 485 (746)
T PTZ00429 440 MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFID 485 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHh
Confidence 677888765 68999999999999999999999999999998873
No 4
>KOG1060|consensus
Probab=100.00 E-value=1.6e-59 Score=515.51 Aligned_cols=435 Identities=37% Similarity=0.581 Sum_probs=396.8
Q ss_pred ccCcCcHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhc
Q psy2915 9 TTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAF 88 (883)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~ 88 (883)
.+...+-++++..|+|+++..|+++|+++|.+|+.|+|+|.+||+|||.++++|.++||++|+|+.+|++++||+++|.+
T Consensus 31 ~sd~~~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI 110 (968)
T KOG1060|consen 31 LSDNIRHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI 110 (968)
T ss_pred ecCCCChHHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHH
Q psy2915 89 STFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVR 168 (883)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VR 168 (883)
|| +||+|.|||+.+|+.|||+|++|+.|.+++.+.-+|+++.+|++||||
T Consensus 111 nt------------------------------fQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVR 160 (968)
T KOG1060|consen 111 NT------------------------------FQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVR 160 (968)
T ss_pred HH------------------------------HHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHH
Confidence 99 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccC-----CccccccccccCC-CCcHHHHH
Q psy2915 169 KTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKS-----YWQRNLSSRKKQI-CWNLPYLM 242 (883)
Q Consensus 169 k~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~-----~~~~~l~~~~~~~-~w~q~~~l 242 (883)
|.||.|+.|+|..+|+.-. .+.+.+..||.|++|.|+++|+.++.++|+++ +.+++++..+++. +|+|+.++
T Consensus 161 k~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI 238 (968)
T KOG1060|consen 161 KTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLI 238 (968)
T ss_pred HHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHH
Confidence 9999999999999999873 68899999999999999999999999999874 4455677766665 69999999
Q ss_pred h-hccccccC----------------------------------------------CCCCCCchH--HHHHHHHHHhhcC
Q psy2915 243 N-LSVIYPAW----------------------------------------------PLSTINPHT--PLLKVLMKLMEML 273 (883)
Q Consensus 243 ~-l~~~~~~~----------------------------------------------~l~~~n~~v--~~~~~l~~l~~~~ 273 (883)
. |.+|++.. .+++.||+| +++.+..+++.
T Consensus 239 ~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP-- 316 (968)
T KOG1060|consen 239 NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP-- 316 (968)
T ss_pred HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC--
Confidence 9 99987321 356778887 66666655532
Q ss_pred CCChhhHHHHHHHHhHHHHHhhcCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhh
Q psy2915 274 PGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQAN 353 (883)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~lL~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~n 353 (883)
.. -+..++.+|+++|.+++++||++|++|..++...|.+|.||++.||++..|+..+|..||++|..++|+.|
T Consensus 317 --~~-----~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn 389 (968)
T KOG1060|consen 317 --KN-----QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESN 389 (968)
T ss_pred --HH-----HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc
Confidence 11 35667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH----------------------------
Q psy2915 354 IAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK---------------------------- 405 (883)
Q Consensus 354 v~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~---------------------------- 405 (883)
+..|++||+.|..+.|.+|...++++||+||.+.-...+.|++.|+.++++.
T Consensus 390 i~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~ 469 (968)
T KOG1060|consen 390 ISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILF 469 (968)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988765
Q ss_pred ------------------------hhhhhCC-HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy2915 406 ------------------------YAERIDN-ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSL 460 (883)
Q Consensus 406 ------------------------~~~~i~~-~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~ 460 (883)
|++.++. +|++++.+++.|.+|.++||+++|...+|+|.....+.+.+..+++++
T Consensus 470 ~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L 549 (968)
T KOG1060|consen 470 QLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFEL 549 (968)
T ss_pred HHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHHH
Confidence 4444443 789999999999999999999999999999999988999999999999
Q ss_pred hhcCCCChhhhhhhHHHHHhhcCCc
Q psy2915 461 ATQDSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 461 ~~~d~~~~evrdrA~~y~~ll~~~~ 485 (883)
+.+|. +.|+||||+++..++....
T Consensus 550 ~~yD~-sYDiRDRaRF~r~l~~~~~ 573 (968)
T KOG1060|consen 550 ARYDL-SYDIRDRARFLRQLISPLE 573 (968)
T ss_pred hccCC-CcchhHHHHHHHHHhccHH
Confidence 99995 9999999999999887653
No 5
>KOG1062|consensus
Probab=100.00 E-value=1.3e-55 Score=488.19 Aligned_cols=430 Identities=20% Similarity=0.288 Sum_probs=369.7
Q ss_pred CcHHHHHHHhcC--CChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhccc
Q psy2915 13 GEIFELKGELNS--DKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFST 90 (883)
Q Consensus 13 ~~~~~~~~~l~~--~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~ 90 (883)
.|++.||..++. .+..++++++.|++|++|+|||.+|++++++|+++++++..||+||++.+.+.++++|+.+|++|+
T Consensus 32 kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNs 111 (866)
T KOG1062|consen 32 KECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNS 111 (866)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 589999999998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHH
Q psy2915 91 FFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKT 170 (883)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~ 170 (883)
+++||+|+|.+++|+||.++|++++||+++++.|.|.+++.+++||||||
T Consensus 112 ------------------------------lknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKK 161 (866)
T KOG1062|consen 112 ------------------------------LKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKK 161 (866)
T ss_pred ------------------------------HHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc----c----ccccccC---------
Q psy2915 171 AAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR----N----LSSRKKQ--------- 233 (883)
Q Consensus 171 A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~----~----l~~~~~~--------- 233 (883)
|++|+.|++++.|+.+ +.|++...++|.|++++|+.+++..+.++|+..|... + ++.++++
T Consensus 162 A~Lca~r~irK~P~l~--e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspe 239 (866)
T KOG1062|consen 162 AALCAVRFIRKVPDLV--EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPE 239 (866)
T ss_pred HHHHHHHHHHcCchHH--HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999 4599999999999999999999999999999876422 1 2222211
Q ss_pred -------CCCcHHHHHhhccccccC------------------CCCCCCchH----HHHHHHHHHhhcCCCChhhHHHHH
Q psy2915 234 -------ICWNLPYLMNLSVIYPAW------------------PLSTINPHT----PLLKVLMKLMEMLPGEGDFVSTLT 284 (883)
Q Consensus 234 -------~~w~q~~~l~l~~~~~~~------------------~l~~~n~~v----~~~~~l~~l~~~~~~~~~~~~~~~ 284 (883)
.||.|+++||+.++..++ .=++.|... +|+++++.+.. . +.+.
T Consensus 240 ydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~----~----~~Lr 311 (866)
T KOG1062|consen 240 YDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS----N----SGLR 311 (866)
T ss_pred cCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC----C----chHH
Confidence 169999999955554333 123444432 88888875432 2 2266
Q ss_pred HHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHHhc-ccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2915 285 KKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHE-MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELK 362 (883)
Q Consensus 285 ~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~ 362 (883)
..+++.|.+||. ++.|+||+||..+.+.++.+|+.+++| ..++.|+.|+|.+||++|||+++.++|++|+..+++||.
T Consensus 312 vlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl 391 (866)
T KOG1062|consen 312 VLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELL 391 (866)
T ss_pred HHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 778999999995 567999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH-------------------------------------
Q psy2915 363 EYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK------------------------------------- 405 (883)
Q Consensus 363 ~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~------------------------------------- 405 (883)
.|+...|++|+.+++..|..++++|+|...|++++++++++..
T Consensus 392 ~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~ 471 (866)
T KOG1062|consen 392 EFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSE 471 (866)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987764
Q ss_pred ---------------------hhhhhCC-----------HHHHHHHHhhhh--cCCCHHHHHHHHHHHHHHhhcCCchHH
Q psy2915 406 ---------------------YAERIDN-----------ADELLESFLEGF--HDENTQVQLQLLTAIVKLFLKRPTDTQ 451 (883)
Q Consensus 406 ---------------------~~~~i~~-----------~~~il~~l~~~~--~~~~~~vr~~~L~al~Kl~~~~~~~~~ 451 (883)
|++..-+ ..+++..+.+.+ ..-+..++.++|+|+.|++.+.++. .
T Consensus 472 ~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~ 550 (866)
T KOG1062|consen 472 DTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-S 550 (866)
T ss_pred hhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-H
Confidence 3322111 123333332221 2335889999999999999998864 5
Q ss_pred HHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC
Q psy2915 452 ELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG 484 (883)
Q Consensus 452 ~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~ 484 (883)
+-+..++...+.+ .|.++|+||.||..++..+
T Consensus 551 ~ri~~lI~~~~~s-~~~elQQRa~E~~~l~~~~ 582 (866)
T KOG1062|consen 551 ERIKQLISSYKSS-LDTELQQRAVEYNALFAKD 582 (866)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHH
Confidence 6678888877777 5999999999999999765
No 6
>KOG1061|consensus
Probab=100.00 E-value=3.8e-54 Score=479.64 Aligned_cols=391 Identities=75% Similarity=1.172 Sum_probs=374.7
Q ss_pred hhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHH
Q psy2915 489 ILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVR 568 (883)
Q Consensus 489 ~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~ 568 (883)
..+++++|+|..|+.|.|++.+|+++++.+++.|...||++|+|+..|+..+|+.+.+++|++.||+.|+||++|++|+|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlr 108 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALR 108 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 569 TMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 569 ~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
++|.++.+.+.+++..++.++++|.+||||++|+.++.++++.+++...+..+++.|..++.|.||.|+.+|+.++.+|.
T Consensus 109 tm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 109 TMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred ceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 649 EASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 649 ~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
...|+ .....+.+...+++++.+.++++|+|+.+|+.+..|.|+++.+++++++.+.+.++|.|++|+..+++++++..
T Consensus 189 e~~~~-~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 189 ESHPS-VNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred HhCCC-CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 87654 46778999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhcc
Q psy2915 729 EMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLAS 808 (883)
Q Consensus 729 ~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~ 808 (883)
++.+. +.+....++.++++.++++.+++.|++|++++.+.+..|+++..+++.|||.++|+.|||..|++++.++++
T Consensus 268 ~~~~~---~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 268 KYLKQ---VNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHHHH---HHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 65543 456788899999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ccchhh------------------------------------------------hhHHHHHHHHHHHHHHhhCCCchHHH
Q psy2915 809 QANIAQ------------------------------------------------VNYVVQEAIVVIKDIFRKYPNKYETI 840 (883)
Q Consensus 809 ~~N~~~------------------------------------------------~~~~~~e~i~~i~~l~~~~p~~~~~~ 840 (883)
+.|+.+ .+|+++|+++.|+++.++||.+++.+
T Consensus 345 ~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v 424 (734)
T KOG1061|consen 345 DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV 424 (734)
T ss_pred HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh
Confidence 999976 36899999999999999999999999
Q ss_pred HHHHHhhcccCCcHHHHHHHHHHHhcCcCccCCHHHHHHhhhC
Q psy2915 841 ISTLCENLDTLDEPEARASMIWIIGEYAERIDNADELLESFLE 883 (883)
Q Consensus 841 i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~~~~~~~~~~~e 883 (883)
+..++.+++++++|+||++++|++|||++.++|++++++.|+|
T Consensus 425 v~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~e 467 (734)
T KOG1061|consen 425 VAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLE 467 (734)
T ss_pred hhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999986
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=1.8e-53 Score=501.69 Aligned_cols=430 Identities=37% Similarity=0.603 Sum_probs=364.8
Q ss_pred cHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccc
Q psy2915 14 EIFELKGELNSD--KKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTF 91 (883)
Q Consensus 14 ~~~~~~~~l~~~--~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~ 91 (883)
..+|+++.+++. +.++|+++++|+++++++|+|++++||+++++++++|++.||+||+|++.+++.+||+++|++|+
T Consensus 5 ~~~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~- 83 (526)
T PF01602_consen 5 ISQELAKILNSFKIDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINS- 83 (526)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHH-
Confidence 344555555555 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHH
Q psy2915 92 FYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTA 171 (883)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A 171 (883)
++|||+|+||++|++|||++|+++++++++.+.+.|.+++.|++|||||+|
T Consensus 84 -----------------------------l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A 134 (526)
T PF01602_consen 84 -----------------------------LQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKA 134 (526)
T ss_dssp -----------------------------HHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHH
T ss_pred -----------------------------HHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcc-----cccccc-----ccCCCCcHHHH
Q psy2915 172 AVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQ-----RNLSSR-----KKQICWNLPYL 241 (883)
Q Consensus 172 ~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~-----~~l~~~-----~~~~~w~q~~~ 241 (883)
++|++++|+.+|+.+++. +.+.+.++|.|+|++|+.+|+.++.++ +..+.. ..+... ....+|.|+.+
T Consensus 135 ~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~i 212 (526)
T PF01602_consen 135 ALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKI 212 (526)
T ss_dssp HHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHH
Confidence 999999999999999765 899999999999999999999999999 222221 112222 22347999999
Q ss_pred Hh-hccccccC---------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHH
Q psy2915 242 MN-LSVIYPAW---------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQ 302 (883)
Q Consensus 242 l~-l~~~~~~~---------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr 302 (883)
++ +..+.+.. .+++.+++| ++++++..+.. . ......++++|+++|+ +++|+|
T Consensus 213 l~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~----~----~~~~~~~~~~L~~lL~s~~~nvr 284 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP----S----PELLQKAINPLIKLLSSSDPNVR 284 (526)
T ss_dssp HHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----S----HHHHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc----c----hHHHHhhHHHHHHHhhcccchhe
Confidence 99 88888754 234555666 77777765432 1 2267889999999996 567999
Q ss_pred HHHHHHHHHHHhhCch-hHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhc-CHHHHHHHHHHH
Q psy2915 303 YVALRNINLIVQKRPD-ILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEV-DVDFVRKAVRAI 380 (883)
Q Consensus 303 ~~aL~~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~-d~~~r~~ai~aI 380 (883)
|+||+.+..++..+|. +...+...+.+..++|.+||++|+++|+.+++++|+..|+++|.+|+++. |++++++++.+|
T Consensus 285 ~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I 364 (526)
T PF01602_consen 285 YIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAI 364 (526)
T ss_dssp HHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred hhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHH
Confidence 9999999999999954 44455677767779999999999999999999999999999999999554 899999999999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHhH----------------------------------------------------hhh
Q psy2915 381 GRCAIKVEQSAERCVSTLLDLIQTK----------------------------------------------------YAE 408 (883)
Q Consensus 381 ~~la~k~~~~~~~~v~~Ll~lL~~~----------------------------------------------------~~~ 408 (883)
+.++.++++...|+++.+++++... |++
T Consensus 365 ~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 365 GDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred HHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 9999999999999999999998853 666
Q ss_pred hhCC---HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcC
Q psy2915 409 RIDN---ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTD--TQELVQQVLSLATQDSDNPDLRDRGFIYWRLLST 483 (883)
Q Consensus 409 ~i~~---~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~--~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~ 483 (883)
..++ ++++++.+.+.+.+++..||..++++++|++.+.|.. ...+...+.+++..++.|+||||||++|+++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 445 LIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 7777 8899999999999999999999999999999998852 3477777777777554699999999999999864
No 8
>KOG1077|consensus
Probab=100.00 E-value=2.2e-51 Score=445.76 Aligned_cols=433 Identities=21% Similarity=0.305 Sum_probs=370.6
Q ss_pred cCcHHHHHHHhcCC---ChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhc
Q psy2915 12 KGEIFELKGELNSD---KKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAF 88 (883)
Q Consensus 12 ~~~~~~~~~~l~~~---~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~ 88 (883)
+.|++.||..|+.+ +.++|+++++|++|++++|+|+.|++|+.+++++++.+++|.+||++++.+..+++|+.-+++
T Consensus 34 nkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvi 113 (938)
T KOG1077|consen 34 NKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVI 113 (938)
T ss_pred HHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHH
Confidence 35899999999987 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcC--CCChh
Q psy2915 89 STFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK--DEDPY 166 (883)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~--d~~~~ 166 (883)
|+ +++||.|.||...++||.++|++|+.++.+.+.++|.++|. ++.++
T Consensus 114 n~------------------------------iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~ 163 (938)
T KOG1077|consen 114 NS------------------------------IKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDY 163 (938)
T ss_pred HH------------------------------HHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHH
Confidence 99 99999999999999999999999999999999999999985 45799
Q ss_pred HHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcccccc---------ccc------
Q psy2915 167 VRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLS---------SRK------ 231 (883)
Q Consensus 167 VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~---------~~~------ 231 (883)
||++||+|+.++|+..||.++..+|.+++..+|+|.+-+|..++...+.-+++.+|..+... ...
T Consensus 164 vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~ 243 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTS 243 (938)
T ss_pred HHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999877899999999999999999999999999998888654211 100
Q ss_pred --------cCCCCcHHHHHhhccccccC----------------------C-----CCCCCch--H--HHHHHHHHHhhc
Q psy2915 232 --------KQICWNLPYLMNLSVIYPAW----------------------P-----LSTINPH--T--PLLKVLMKLMEM 272 (883)
Q Consensus 232 --------~~~~w~q~~~l~l~~~~~~~----------------------~-----l~~~n~~--v--~~~~~l~~l~~~ 272 (883)
...||+|++++|+..+.|.. . .++.|.. | +++++++++
T Consensus 244 ~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~--- 320 (938)
T KOG1077|consen 244 LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL--- 320 (938)
T ss_pred hhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc---
Confidence 01269999999944444543 0 1111211 1 444443322
Q ss_pred CCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCc--hhHHhccc-ceeecc-CCCHHHHHHHHHHHHH
Q psy2915 273 LPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRP--DILKHEMK-VFFVKY-NDPIYVKLEKLDIMIR 347 (883)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~--~~~~~~~~-~~~~l~-~~~~~Ir~~aL~iL~~ 347 (883)
. ..++++.+++..|++||+ .++|+||+||+++..++...+ +.++.|.+ ++..+. +.|.+||++|+|+||.
T Consensus 321 -D----~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 321 -D----SEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred -C----CcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2 235688999999999996 688999999999999998765 45777754 555666 9999999999999999
Q ss_pred hcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH----------------------
Q psy2915 348 LASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK---------------------- 405 (883)
Q Consensus 348 l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~---------------------- 405 (883)
|||.+|++.||.||.+|+...|..+|.+.+.+++++++||+++.+|+|++.++++...
T Consensus 396 mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedl 475 (938)
T KOG1077|consen 396 MCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDL 475 (938)
T ss_pred HhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhh
Confidence 9999999999999999999999999999999999999999999999999999998765
Q ss_pred -------------------------------hhhhhCC-----HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCch
Q psy2915 406 -------------------------------YAERIDN-----ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTD 449 (883)
Q Consensus 406 -------------------------------~~~~i~~-----~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~ 449 (883)
|+..+.+ +...+..+.+.|+-.++.+|+.+|++..|++...| +
T Consensus 476 q~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E 554 (938)
T KOG1077|consen 476 QGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E 554 (938)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h
Confidence 2222221 23445566778888899999999999999999887 7
Q ss_pred HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC
Q psy2915 450 TQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG 484 (883)
Q Consensus 450 ~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~ 484 (883)
.+..+..+++...+- .|.|+|+||+||+.+....
T Consensus 555 i~~~v~~vFq~~~n~-~D~ElQqRa~EYLql~k~a 588 (938)
T KOG1077|consen 555 IKSNVQKVFQLYSNL-IDVELQQRAVEYLQLSKLA 588 (938)
T ss_pred hhHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHhc
Confidence 899999999988887 5999999999999998765
No 9
>KOG1062|consensus
Probab=100.00 E-value=1.3e-49 Score=440.60 Aligned_cols=395 Identities=17% Similarity=0.260 Sum_probs=327.0
Q ss_pred hhhhhhhHHHHHhhcCCc-hhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh
Q psy2915 468 PDLRDRGFIYWRLLSTGN-TFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM 546 (883)
Q Consensus 468 ~evrdrA~~y~~ll~~~~-~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l 546 (883)
.-|+..+....+.+..+. ....-++.+.|++|..++||+..++.++.+++++|+++..||+||+++..+.++.+|+.++
T Consensus 28 ~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllL 107 (866)
T KOG1062|consen 28 AVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLL 107 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHH
Confidence 334444444555554432 2234457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHH
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK 626 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~ 626 (883)
++|++++||+++|.++.++||+++|++.++||++.+.|.|.+++++++|+|||||++|..|++++.|+.+ ..|++...
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~~~~ 185 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVIAFR 185 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 47999999
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhcCCCchh-hHHhcHHHHHHHHHHcc-----------cCChhhHHHHHHHHhccCCCC
Q psy2915 627 DLLSDSNPMVVANAVAALSEMNEASTSGVA-LIEMNAQTINKLLTALN-----------ECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 627 ~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~-~~~l~~~~~~~L~~~l~-----------~~~~w~qi~iL~lL~~~~~~~ 694 (883)
++|.|++++|..+++..+.++|+..|+.-. |.++++..+..|-+... -++||+|++||++|.-++..|
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d 265 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND 265 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998775433 44455544433333222 159999999999999999887
Q ss_pred hHHHH---HHHHHHhHhh---cCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHH
Q psy2915 695 DREAQ---SICERITPRL---AHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNIN 768 (883)
Q Consensus 695 ~~~~~---~il~~l~~~l---~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~ 768 (883)
++... +++..+.... ++.+.||+|||+++|+.+. .++.++..+++.+++ ||++++.|+||+||..|.
T Consensus 266 ~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~----~~~~LrvlainiLgk---FL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 266 ADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR----SNSGLRVLAINILGK---FLLNRDNNIRYVALNMLL 338 (866)
T ss_pred ccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc----CCchHHHHHHHHHHH---HhcCCccceeeeehhhHH
Confidence 65543 3333333222 2345599999999999994 556788888888887 777899999999999999
Q ss_pred HHHhhCchhHhhcc-ceeEEccCCCHHHHHHHHHHHHHhccccchhh------------hhHHHHHHHHHHHHHHhhCCC
Q psy2915 769 LIVQKRPDILKHEM-KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ------------VNYVVQEAIVVIKDIFRKYPN 835 (883)
Q Consensus 769 ~l~~~~~~~~~~~~-~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~------------~~~~~~e~i~~i~~l~~~~p~ 835 (883)
++++..|+.+++|. .++.|+.++|.+||++|+|++++|+|++|+.. .++++.+++..|..++++|..
T Consensus 339 r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 339 RVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred hhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 78889999999999999999999999999987 467888899999999999943
Q ss_pred ---chHHHHHHHHhhcc----------------------------------------cCCcHHHHHHHHHHHhcCcCcc
Q psy2915 836 ---KYETIISTLCENLD----------------------------------------TLDEPEARASMIWIIGEYAERI 871 (883)
Q Consensus 836 ---~~~~~i~~L~~~l~----------------------------------------~i~~~~~~~~~~w~lgey~~~~ 871 (883)
||.+++.+++...+ .+.++...+.++|+||||++..
T Consensus 419 ~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdll 497 (866)
T KOG1062|consen 419 DKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLL 497 (866)
T ss_pred cchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHh
Confidence 44444433322111 2556666788899999999553
No 10
>KOG1060|consensus
Probab=100.00 E-value=2.8e-49 Score=434.94 Aligned_cols=386 Identities=39% Similarity=0.644 Sum_probs=352.0
Q ss_pred HHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcC
Q psy2915 477 YWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE 556 (883)
Q Consensus 477 y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~ 556 (883)
..++++.. .....++++|+++..|+.|.|++.+|++|++..++++..+||++|+|+-+|+.++|++++|.+|++||+|.
T Consensus 40 L~~lLdSn-kd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~ 118 (968)
T KOG1060|consen 40 LKQLLDSN-KDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALK 118 (968)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhc
Confidence 34455443 33456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhH
Q psy2915 557 DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMV 636 (883)
Q Consensus 557 ~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V 636 (883)
|+|+.+|+.|||+|++|+.+-+++.++-.|+++..|++|||||.|+.|+-|+|..+|+.-. .+.+.+..||.|.+|.|
T Consensus 119 DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splV 196 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLV 196 (968)
T ss_pred CCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999998763 68899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC------CC-----------------
Q psy2915 637 VANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS------PK----------------- 693 (883)
Q Consensus 637 ~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~------~~----------------- 693 (883)
..+|+.++.++|++ .++++|+.++++|+.+.+.++|+|+.+++.|.+|+ |.
T Consensus 197 vgsAv~AF~evCPe------rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~ 270 (968)
T KOG1060|consen 197 VGSAVMAFEEVCPE------RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKD 270 (968)
T ss_pred hhHHHHHHHHhchh------HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccc
Confidence 99999999999964 58999999999999999999999999999999986 20
Q ss_pred ----------ChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHH
Q psy2915 694 ----------DDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVA 763 (883)
Q Consensus 694 ----------~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~a 763 (883)
.+.+...+++...+++++.|++|+++++++..+++ |. . -.+.++.+|++++.+++++||++
T Consensus 271 ~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA---P~-----~-~~~~i~kaLvrLLrs~~~vqyvv 341 (968)
T KOG1060|consen 271 KYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA---PK-----N-QVTKIAKALVRLLRSNREVQYVV 341 (968)
T ss_pred cccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC---CH-----H-HHHHHHHHHHHHHhcCCcchhhh
Confidence 03445678889999999999999999999999995 22 1 24467899999999999999999
Q ss_pred HHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhccccchhh-----------------------------
Q psy2915 764 LRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ----------------------------- 814 (883)
Q Consensus 764 L~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~----------------------------- 814 (883)
|+++..+....|.+|.+|++.||....|+.-++..||++|..++|+.|+..
T Consensus 342 L~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 342 LQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred HHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976
Q ss_pred --------------------hhHHHHHHHHHHHHHHhhCCCchHHHHHHHHhhcccCCcHHHHHHHHHHHhcCcCccCC-
Q psy2915 815 --------------------VNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEARASMIWIIGEYAERIDN- 873 (883)
Q Consensus 815 --------------------~~~~~~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~~- 873 (883)
...++.|.+++|+.|.++.|..|..+|.+|...++.+.-|.||++++|++|||++.++.
T Consensus 422 ~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri 501 (968)
T KOG1060|consen 422 RIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI 501 (968)
T ss_pred hhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh
Confidence 13478889999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHHh
Q psy2915 874 ADELLES 880 (883)
Q Consensus 874 ~~~~~~~ 880 (883)
+++++..
T Consensus 502 ~PDVLR~ 508 (968)
T KOG1060|consen 502 APDVLRK 508 (968)
T ss_pred chHHHHH
Confidence 5555544
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=7.3e-47 Score=445.54 Aligned_cols=383 Identities=36% Similarity=0.598 Sum_probs=336.9
Q ss_pred hhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHH
Q psy2915 488 YILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAV 567 (883)
Q Consensus 488 ~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL 567 (883)
...+++++++++.++.|+++++++++++++++++++..||+||+++..+.+.+++...+++|+++||++|+||.+|++||
T Consensus 21 ~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL 100 (526)
T PF01602_consen 21 SKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLAL 100 (526)
T ss_dssp HHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy2915 568 RTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM 647 (883)
Q Consensus 568 ~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i 647 (883)
+++++++++++++.+.+.|.+++.|++|+|||+|+.|+.++++.+|+.+.+. |++.+.++|.|+|++|+.+|+.++.++
T Consensus 101 ~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 101 RTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755 899999999999999999999999999
Q ss_pred HhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHH--HHHHHHHhHhhcCCChHHHHHHHHHHH
Q psy2915 648 NEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREA--QSICERITPRLAHANAAVVLSAVKVLM 725 (883)
Q Consensus 648 ~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~--~~il~~l~~~l~~~~~aV~~eai~~i~ 725 (883)
+. +++.+..+.+..+..+.+.+..++||.|++++++|..+.+.++... ..+++.+.+++++.+++|++||++++.
T Consensus 180 -~~--~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 180 -KC--NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp -HC--THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cc--CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 32 1233447888999999998899999999999999999999998888 789999999999999999999999999
Q ss_pred HhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHh-hccceeEEccCCCHHHHHHHHHHH
Q psy2915 726 KLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILK-HEMKVFFVKYNDPIYVKLEKLDIM 803 (883)
Q Consensus 726 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~-~~~~~~~~l~~dd~~Ir~~~l~lL 803 (883)
.+. +.+ ...+.+.++|..+++ +++|+||++|+.+..++..+|..+. .+...+.+..+||.+||++|+++|
T Consensus 257 ~l~----~~~----~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 257 KLS----PSP----ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HHS----SSH----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred Hhh----cch----HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHH
Confidence 983 432 255667777887776 6888999999999999999965554 334555566688999999999999
Q ss_pred HHhccccchhh--------------------------------------------------hhHHHHHHHHHHHHHHhhC
Q psy2915 804 IRLASQANIAQ--------------------------------------------------VNYVVQEAIVVIKDIFRKY 833 (883)
Q Consensus 804 ~~l~~~~N~~~--------------------------------------------------~~~~~~e~i~~i~~l~~~~ 833 (883)
+.++|++|++. ++++..|++..+++++.++
T Consensus 329 ~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 329 YKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 99999999986 2445666777888888888
Q ss_pred CCchHHHHHHHHhhcccCCcHHHHHHHHHHHhcCcCccCC---HHHHHHhhh
Q psy2915 834 PNKYETIISTLCENLDTLDEPEARASMIWIIGEYAERIDN---ADELLESFL 882 (883)
Q Consensus 834 p~~~~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~~---~~~~~~~~~ 882 (883)
|+.+..++.++++.+..+++|+++++++|++|||++..++ +.++++.++
T Consensus 409 ~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~ 460 (526)
T PF01602_consen 409 PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLI 460 (526)
T ss_dssp TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 777776654
No 12
>KOG1059|consensus
Probab=100.00 E-value=9.5e-46 Score=403.94 Aligned_cols=384 Identities=21% Similarity=0.333 Sum_probs=325.9
Q ss_pred hhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHh
Q psy2915 491 LHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTM 570 (883)
Q Consensus 491 ~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L 570 (883)
.+++.++.|..+.|.|++|.-+++++.++++.+..||.||+++.+-+...++...+++|+++||++++|.+-.+.||..|
T Consensus 54 ~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GL 133 (877)
T KOG1059|consen 54 SNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGL 133 (877)
T ss_pred HHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheeccc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 571 GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 571 ~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
+.+.+|+++..+.+.|..+|+++.|||||+|+..++|++..+|+.+. .-+|.|.+-|+|+||+|+.+|++++||+++.
T Consensus 134 S~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArK 211 (877)
T KOG1059|consen 134 SCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARK 211 (877)
T ss_pred ccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999996 4569999999999999999999999999998
Q ss_pred CCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCCh-HHHHHHHHHHHHhhh
Q psy2915 651 STSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANA-AVVLSAVKVLMKLME 729 (883)
Q Consensus 651 ~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~-aV~~eai~~i~~~~~ 729 (883)
+| +.|+++.|-.+.-|.+ ..|+|.-|+++++++.+.|-+|+...++++++.++++++.+ +++|||++|++.. +
T Consensus 212 nP--knyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~-s 285 (877)
T KOG1059|consen 212 NP--QNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAV-S 285 (877)
T ss_pred CC--cccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheee-h
Confidence 55 7799999865544443 57999999999999999999999999999999999999999 9999999999987 3
Q ss_pred hCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhccce-eEEccCCCHHHHHHHHHHHHHhc
Q psy2915 730 MLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKV-FFVKYNDPIYVKLEKLDIMIRLA 807 (883)
Q Consensus 730 ~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~-~~~l~~dd~~Ir~~~l~lL~~l~ 807 (883)
++.+-++ ....++.++..|-.|+. ++||+||+||-.|.+++..||..++.|.++ +-|+.|.|++||.+||+++++|+
T Consensus 286 ~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 286 MSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred hccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 3333222 23344455555555664 899999999999999999999999999965 45888779999999999999999
Q ss_pred cccchhh-------------hhHHHHHHHHHH-----------------------------------------HHHHhhC
Q psy2915 808 SQANIAQ-------------VNYVVQEAIVVI-----------------------------------------KDIFRKY 833 (883)
Q Consensus 808 ~~~N~~~-------------~~~~~~e~i~~i-----------------------------------------~~l~~~~ 833 (883)
+++|+.. +..+..|.+..| .+++-+-
T Consensus 365 skkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV 444 (877)
T KOG1059|consen 365 SKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRV 444 (877)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheec
Confidence 9999976 112334444433 3344444
Q ss_pred CCchHHHHHHHHhhcc----------cCCcHHHHHHHHHHHhcCcCccCCHHHHHHhhhC
Q psy2915 834 PNKYETIISTLCENLD----------TLDEPEARASMIWIIGEYAERIDNADELLESFLE 883 (883)
Q Consensus 834 p~~~~~~i~~L~~~l~----------~i~~~~~~~~~~w~lgey~~~~~~~~~~~~~~~e 883 (883)
|..+...+......+. +-.-+++..|++|++|||+++++|..++++.+++
T Consensus 445 ~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlr 504 (877)
T KOG1059|consen 445 PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLR 504 (877)
T ss_pred hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhc
Confidence 5544444444333332 2234678889999999999999999999988753
No 13
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.1e-44 Score=406.87 Aligned_cols=439 Identities=39% Similarity=0.621 Sum_probs=378.8
Q ss_pred CcCcHHHHHHH-hcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcc
Q psy2915 11 KKGEIFELKGE-LNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFS 89 (883)
Q Consensus 11 ~~~~~~~~~~~-l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n 89 (883)
++.+.+..+.. ++|+++++|++|+|++|..|+.|+|++.+||+|++.+.+.|.++|||+|+||.+|++-+|+.+++++|
T Consensus 16 ~~~~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavN 95 (757)
T COG5096 16 NADSVAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVN 95 (757)
T ss_pred cchHHhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 45577788888 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHH
Q psy2915 90 TFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRK 169 (883)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk 169 (883)
+ ++||++|+||++|+.|+|++|.++.+++.+.++++|+++++|+++||||
T Consensus 96 t------------------------------i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk 145 (757)
T COG5096 96 T------------------------------IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRK 145 (757)
T ss_pred H------------------------------HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc--cccccccCC---------CCcH
Q psy2915 170 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR--NLSSRKKQI---------CWNL 238 (883)
Q Consensus 170 ~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~--~l~~~~~~~---------~w~q 238 (883)
+|++|+.++|+.+|+.+.+.+....+..++.|+||.|..+|+.+|.++.++....+ .....+++. +|.+
T Consensus 146 ~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~ 225 (757)
T COG5096 146 TAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLL 225 (757)
T ss_pred HHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHH
Confidence 99999999999999999887788999999999999999999999999998732211 222233321 4888
Q ss_pred HHHHh-hccccccC-------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcCC-hhH
Q psy2915 239 PYLMN-LSVIYPAW-------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEV 301 (883)
Q Consensus 239 ~~~l~-l~~~~~~~-------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~v 301 (883)
..++. +..+.|.. ..++.|+.| .+++.++.+....+... ......+++..++..+ +.+
T Consensus 226 ~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~-----~~~~~~~~l~~Ll~~~~~~~ 300 (757)
T COG5096 226 LIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN-----LFLISSPPLVTLLAKPESLI 300 (757)
T ss_pred HHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc-----HHHhhccHHHHHHcCCHHHH
Confidence 88888 88777655 457788887 78888887777666532 4455668888888765 578
Q ss_pred HHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhh--cCHHHHHHHHHH
Q psy2915 302 QYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATE--VDVDFVRKAVRA 379 (883)
Q Consensus 302 r~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~--~d~~~r~~ai~a 379 (883)
.|+.......+....|..+......|+|.+++|.+++..+++++..+++..|...++.|+..|+.+ .++++.++++++
T Consensus 301 ~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~ 380 (757)
T COG5096 301 QYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKA 380 (757)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 888888888888999999988899999999999999999999999999999999999999999988 999999999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHH---hH---------------------------------------------------
Q psy2915 380 IGRCAIKVEQSAERCVSTLLDLIQ---TK--------------------------------------------------- 405 (883)
Q Consensus 380 I~~la~k~~~~~~~~v~~Ll~lL~---~~--------------------------------------------------- 405 (883)
||..+.+.+.....|+..+++++. ..
T Consensus 381 lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~ 460 (757)
T COG5096 381 LGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSR 460 (757)
T ss_pred HHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhcccc
Confidence 999999988888889999988877 21
Q ss_pred -------------------hhhhhCC-HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHH----HHHHHHHHh
Q psy2915 406 -------------------YAERIDN-ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQE----LVQQVLSLA 461 (883)
Q Consensus 406 -------------------~~~~i~~-~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~----~l~~ll~~~ 461 (883)
|++.++. .+++++.+...+.+|..+||.+++.+.+|++...+....+ .-..+..+|
T Consensus 461 ~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~ 540 (757)
T COG5096 461 EPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRC 540 (757)
T ss_pred CcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHH
Confidence 1111111 1245556667788999999999999999999987765544 555899999
Q ss_pred hcCCCChhhhhhhHHHHHhhcCC
Q psy2915 462 TQDSDNPDLRDRGFIYWRLLSTG 484 (883)
Q Consensus 462 ~~d~~~~evrdrA~~y~~ll~~~ 484 (883)
.+...++|+||||.+|+.+++.+
T Consensus 541 ~~~v~~~DlRDra~my~~~lst~ 563 (757)
T COG5096 541 FDYVLVPDLRDRARMYSRLLSTP 563 (757)
T ss_pred HhccCChhHHHHHHHHHHHhcCC
Confidence 98888999999999999999843
No 14
>KOG1077|consensus
Probab=100.00 E-value=1.4e-43 Score=385.18 Aligned_cols=376 Identities=20% Similarity=0.321 Sum_probs=313.3
Q ss_pred hhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHH
Q psy2915 489 ILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVR 568 (883)
Q Consensus 489 ~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~ 568 (883)
..+.-+.|+++-.++|+|+.+++++.+++++++.+++|.+||++++.+.++++|+..+++|++++|+.+.||...++||+
T Consensus 54 qkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~ 133 (938)
T KOG1077|consen 54 QKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALH 133 (938)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHH
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhhhHHHHHHHHhhcC--CCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy2915 569 TMGCIRVDKITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSE 646 (883)
Q Consensus 569 ~L~~i~~~~~~~~l~~~l~~~l~--d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~ 646 (883)
++|++|+.++++.+.++|.++|. +..++||++|++|++++++..|+.+....|.+.+..+|+|.+.+|..++..++.-
T Consensus 134 ~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~ 213 (938)
T KOG1077|consen 134 CIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEA 213 (938)
T ss_pred HHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHH
Confidence 99999999999999999999996 5679999999999999999999999988999999999999999999999999999
Q ss_pred HHhcCCCchhhHHhcHHHHHHHHHHcc-------------cCChhhHHHHHHHHhccCCC-ChHHHHHHHHHHhHhh---
Q psy2915 647 MNEASTSGVALIEMNAQTINKLLTALN-------------ECTEWGQVFILDSLSNYSPK-DDREAQSICERITPRL--- 709 (883)
Q Consensus 647 i~~~~~~~~~~~~l~~~~~~~L~~~l~-------------~~~~w~qi~iL~lL~~~~~~-~~~~~~~il~~l~~~l--- 709 (883)
+++..| +.+....+..+.+|.+... -++||+|++++++|+.|.+. |+.....+.+++...|
T Consensus 214 lvk~~p--~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~ 291 (938)
T KOG1077|consen 214 LVKKNP--ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKA 291 (938)
T ss_pred HHHcCC--HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhcc
Confidence 999865 5677778888888877653 26999999999999999644 3333334444444433
Q ss_pred ---------cCCCh--HHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCc--h
Q psy2915 710 ---------AHANA--AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRP--D 776 (883)
Q Consensus 710 ---------~~~~~--aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~--~ 776 (883)
+++|+ +|+|||++.++++ +..+++..++++.++. ++.++++|+||++|+++.+++...+ +
T Consensus 292 ~~~~~~k~vq~~na~naVLFeaI~l~~h~----D~e~~ll~~~~~~Lg~---fls~rE~NiRYLaLEsm~~L~ss~~s~d 364 (938)
T KOG1077|consen 292 QEPPKSKKVQHSNAKNAVLFEAISLAIHL----DSEPELLSRAVNQLGQ---FLSHRETNIRYLALESMCKLASSEFSID 364 (938)
T ss_pred ccCccccchHhhhhHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHH---HhhcccccchhhhHHHHHHHHhccchHH
Confidence 23444 9999999999998 6777777777777765 4445899999999999999999865 4
Q ss_pred hHhhccc-eeEEcc-CCCHHHHHHHHHHHHHhccccchhh-----------hhHHHHHHHH-HHHHHHhhCCC---chHH
Q psy2915 777 ILKHEMK-VFFVKY-NDPIYVKLEKLDIMIRLASQANIAQ-----------VNYVVQEAIV-VIKDIFRKYPN---KYET 839 (883)
Q Consensus 777 ~~~~~~~-~~~~l~-~dd~~Ir~~~l~lL~~l~~~~N~~~-----------~~~~~~e~i~-~i~~l~~~~p~---~~~~ 839 (883)
.+..|++ +|..+. +.|.|||++++|+||.||+.+|++. .+|.++|-++ +++.|++||.. ||.+
T Consensus 365 avK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVd 444 (938)
T KOG1077|consen 365 AVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVD 444 (938)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 5788985 444565 4599999999999999999999998 3566666555 99999999976 5555
Q ss_pred HHHHHHhhcccCCcHHHH-----------------------------------HHHHHHHhcCcCccCC
Q psy2915 840 IISTLCENLDTLDEPEAR-----------------------------------ASMIWIIGEYAERIDN 873 (883)
Q Consensus 840 ~i~~L~~~l~~i~~~~~~-----------------------------------~~~~w~lgey~~~~~~ 873 (883)
++.+|+...+++.+.++| ++..|++|||++.|.+
T Consensus 445 viLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 445 VILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD 513 (938)
T ss_pred HHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC
Confidence 666555544333222222 2236999999999864
No 15
>KOG1059|consensus
Probab=100.00 E-value=1.5e-42 Score=379.06 Aligned_cols=434 Identities=21% Similarity=0.299 Sum_probs=346.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccc
Q psy2915 14 EIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFY 93 (883)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~ 93 (883)
=+.|+|+++++.+...|.++++|+.|+.|.|+|++|.-++++++|++..+..||.||++..+-+.+..|++.|.+|+
T Consensus 37 ~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~--- 113 (877)
T KOG1059|consen 37 CLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNL--- 113 (877)
T ss_pred HHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHH---
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHH
Q psy2915 94 QKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAV 173 (883)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~ 173 (883)
++||++|+|.+-.++||..|+++.+|++++++.+.|..+|+++.|||||+|++
T Consensus 114 ---------------------------~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl 166 (877)
T KOG1059|consen 114 ---------------------------LRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAIL 166 (877)
T ss_pred ---------------------------HHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcccc-c----cccc--cCCCCcHHHHHh-hc
Q psy2915 174 CVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRN-L----SSRK--KQICWNLPYLMN-LS 245 (883)
Q Consensus 174 al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~-l----~~~~--~~~~w~q~~~l~-l~ 245 (883)
.++|+|..+||.++. .+|+|.+-|.|+||+|+.+|+..++|+++.+|..+- + .+.+ ..+.|..+++++ |.
T Consensus 167 ~lykvFLkYPeAlr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~ 244 (877)
T KOG1059|consen 167 LLYKVFLKYPEALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFA 244 (877)
T ss_pred HHHHHHHhhhHhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHh
Confidence 999999999999964 669999999999999999999999999999998662 2 2222 234799999999 88
Q ss_pred cccccC-CCC-----------CCCchH----HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHH
Q psy2915 246 VIYPAW-PLS-----------TINPHT----PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRN 308 (883)
Q Consensus 246 ~~~~~~-~l~-----------~~n~~v----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~ 308 (883)
.+.|-. +|. +...+. +|+++++.. +...+.++ ....+..|+..|..|+. +++|+||++|-+
T Consensus 245 aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~-s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 245 ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAV-SMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheee-hhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 888765 111 111111 555554432 11111111 24578889999999994 788999999999
Q ss_pred HHHHHhhCchhHHhccc-ceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCH-HHHHHHHHHHHHHHhh
Q psy2915 309 INLIVQKRPDILKHEMK-VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDV-DFVRKAVRAIGRCAIK 386 (883)
Q Consensus 309 l~~l~~~~~~~~~~~~~-~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~-~~r~~ai~aI~~la~k 386 (883)
+.+++..+|..++.|.+ ++.|+.|.|.+||.+||++|+.|++++|+..|++.|..++...+. .+|.+.+..|-.++.+
T Consensus 323 m~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 99999999999999975 566999999999999999999999999999999999999866555 8999999888666653
Q ss_pred ch----hhHHHHHHHHHHHHHhH---------------------------------------------------------
Q psy2915 387 VE----QSAERCVSTLLDLIQTK--------------------------------------------------------- 405 (883)
Q Consensus 387 ~~----~~~~~~v~~Ll~lL~~~--------------------------------------------------------- 405 (883)
.. .+.+||+..+.++..-+
T Consensus 403 snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~Aaa 482 (877)
T KOG1059|consen 403 SNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAA 482 (877)
T ss_pred hhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHH
Confidence 33 34589999998865433
Q ss_pred -----hhhhhCCHHHHHHHHhhh-hcCCCHHHHHHHHHHHHHHhhcC-----Cch----HHHHHHHH---HHHhhcCCCC
Q psy2915 406 -----YAERIDNADELLESFLEG-FHDENTQVQLQLLTAIVKLFLKR-----PTD----TQELVQQV---LSLATQDSDN 467 (883)
Q Consensus 406 -----~~~~i~~~~~il~~l~~~-~~~~~~~vr~~~L~al~Kl~~~~-----~~~----~~~~l~~l---l~~~~~d~~~ 467 (883)
|++.+++..++++.+... ...-+.-++.-.+.+++|+|+.- +.. ...+...+ +...... .|
T Consensus 483 Wi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s-~d 561 (877)
T KOG1059|consen 483 WILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGS-SD 561 (877)
T ss_pred HHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCc-cc
Confidence 333334444444444432 22346678888899999998752 111 12222222 2333444 48
Q ss_pred hhhhhhhHHHHHhhc
Q psy2915 468 PDLRDRGFIYWRLLS 482 (883)
Q Consensus 468 ~evrdrA~~y~~ll~ 482 (883)
.|||+||.+.+.++.
T Consensus 562 ~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 562 LEVQERASEVLELIR 576 (877)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999876555543
No 16
>KOG1058|consensus
Probab=100.00 E-value=2.5e-36 Score=331.34 Aligned_cols=355 Identities=26% Similarity=0.375 Sum_probs=295.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHh-hccCCChhHHHHHHHHHHHhhccCC------cchhhh
Q psy2915 15 IFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVN-CMQTDNLELKKLVYLYLMNYAKSHP------DMAIMA 87 (883)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~-~~~~~~~~~k~~~y~~~~~~~~~~~------~~~~~~ 87 (883)
-.|+++.|++++.+.|.+++|++|+.|.+|++.++++|.|++ +|++.|+++||+.|+||...-+-++ || +|+
T Consensus 22 ~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EM-ILv 100 (948)
T KOG1058|consen 22 EDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEM-ILV 100 (948)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHH-HHH
Confidence 458999999999999999999999999999999999999998 8999999999999999999865544 66 899
Q ss_pred cccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhH
Q psy2915 88 FSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYV 167 (883)
Q Consensus 88 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~V 167 (883)
+|. ++|||+|||+++||..||+||+++.|++.+.+.|.|..|++|+++||
T Consensus 101 cna------------------------------~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYV 150 (948)
T KOG1058|consen 101 CNA------------------------------YRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYV 150 (948)
T ss_pred HHH------------------------------HhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhh
Confidence 999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCccccccccHHHHHHH-HhcCCChhHHHHHHHHHHhccccCCccccccccccCCC-CcHHHHHhhc
Q psy2915 168 RKTAAVCVAKLYDINAQLVEDQGFLDQLKD-LLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQIC-WNLPYLMNLS 245 (883)
Q Consensus 168 Rk~A~~al~kl~~~~p~~~~~~~~~~~L~~-lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~-w~q~~~l~l~ 245 (883)
||.|++|+..||+..-.+++| .-+.+.. ++.+.||.+.++|+..|..+.++++..+ +..-+.+.+ |+....+-+.
T Consensus 151 RrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y-l~~~idqi~~~~~~LqlViV 227 (948)
T KOG1058|consen 151 RRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY-LLSNIDQIPSFNDSLQLVIV 227 (948)
T ss_pred hhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH-HHhhHhhccCccHHHHHHHH
Confidence 999999999999988788865 3366666 5579999999999999999988776544 333333332 5554444444
Q ss_pred cccccCCCCCCCchH--HHHHHHHHHhhcCCCChhh-----------HHHHHHHHhHHHHHhhc--CChhHHHHHHHHHH
Q psy2915 246 VIYPAWPLSTINPHT--PLLKVLMKLMEMLPGEGDF-----------VSTLTKKLAPPLVTLLS--SEPEVQYVALRNIN 310 (883)
Q Consensus 246 ~~~~~~~l~~~n~~v--~~~~~l~~l~~~~~~~~~~-----------~~~~~~~~~~~L~~lL~--~~~~vr~~aL~~l~ 310 (883)
++..+.+ +.||+- ..+++++.++..-++...+ .+++++.+++.+++++- ++.|++.+.|..+.
T Consensus 228 E~Irkv~--~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~ 305 (948)
T KOG1058|consen 228 ELIRKVC--LANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLS 305 (948)
T ss_pred HHHHHHH--hcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHH
Confidence 4433321 233433 4444444444332221111 15689999999999984 56699999999999
Q ss_pred HHHhhCchhHHhc-ccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhh-------hcCHHHHHHHHHHHHH
Q psy2915 311 LIVQKRPDILKHE-MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYAT-------EVDVDFVRKAVRAIGR 382 (883)
Q Consensus 311 ~l~~~~~~~~~~~-~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~-------~~d~~~r~~ai~aI~~ 382 (883)
.+...+.++++.. ++++..+..+|..+|++++++.+.+++..|+++++.-|+..+. +.+..+|+.++++|..
T Consensus 306 ~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ 385 (948)
T KOG1058|consen 306 ELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA 385 (948)
T ss_pred HHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence 9998888888887 6889999999999999999999999999999999999997642 2345799999999999
Q ss_pred HHhhchhhHHHHHHHHHHHHHhH
Q psy2915 383 CAIKVEQSAERCVSTLLDLIQTK 405 (883)
Q Consensus 383 la~k~~~~~~~~v~~Ll~lL~~~ 405 (883)
+|.+||..+..+|+.+++.+.+.
T Consensus 386 cav~Fp~~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 386 CAVKFPEVAATVVSLLLDFISDS 408 (948)
T ss_pred HhhcChHHHHHHHHHHHHHhccC
Confidence 99999999999999999999885
No 17
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-35 Score=338.29 Aligned_cols=312 Identities=41% Similarity=0.694 Sum_probs=278.8
Q ss_pred hhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHH
Q psy2915 489 ILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVR 568 (883)
Q Consensus 489 ~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~ 568 (883)
..++++|+++..|+.|+|++.+|++|++..++.|.++||++|+|+..|++.+|+.+.+++|+++||++|+||++|+.|+|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR 114 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALR 114 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 569 TMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 569 ~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
+++.++.+++.+.+++.|+++++|+++||||+|+.|+.++|+.+++.+.+...+..+..++.|.||.|..+|+.++.++.
T Consensus 115 ~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 115 TLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987668899999999999999999999999998
Q ss_pred hcCCCchhhHHhcHHHHHHHHHHccc--------CChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHH
Q psy2915 649 EASTSGVALIEMNAQTINKLLTALNE--------CTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSA 720 (883)
Q Consensus 649 ~~~~~~~~~~~l~~~~~~~L~~~l~~--------~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~ea 720 (883)
.+ .. +......+..+++ ..+|.+..++..|..+.|..+.++..+.+.+....++.|+.|+.-+
T Consensus 195 ~e--~a-------~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~a 265 (757)
T COG5096 195 PE--LA-------HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIA 265 (757)
T ss_pred hh--hh-------hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHH
Confidence 54 12 2223333333332 2399999999999999988887888899999999999999999999
Q ss_pred HHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCC-cchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHH
Q psy2915 721 VKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEK 799 (883)
Q Consensus 721 i~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~ 799 (883)
++.++.+.+.++.. .......++++.++.++ +.+.|+.......+....|+.+..-.+.|+|.++||.+++.++
T Consensus 266 v~~i~~l~~~~~~~-----~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek 340 (757)
T COG5096 266 VKVILRLLVFLPSN-----NLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEK 340 (757)
T ss_pred HHHHHHHhhhhccc-----cHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHH
Confidence 99999998766653 24556778888888876 5688888888888898888888887899999999999999999
Q ss_pred HHHHHHhccccchhh
Q psy2915 800 LDIMIRLASQANIAQ 814 (883)
Q Consensus 800 l~lL~~l~~~~N~~~ 814 (883)
++++..+++..|..+
T Consensus 341 ~~~~t~l~~~~n~~~ 355 (757)
T COG5096 341 LDQLTRLADDQNLSQ 355 (757)
T ss_pred HHHHhhcCCchhhHH
Confidence 999999999999876
No 18
>KOG1058|consensus
Probab=100.00 E-value=2.7e-35 Score=323.21 Aligned_cols=368 Identities=23% Similarity=0.406 Sum_probs=319.9
Q ss_pred hhhhhhHHHHHhhccCCCcccchHHHHH-hhcccchhHHHHHHHHHHhhccCCc-----hhhHhHHHHHHhhcCCCCHHH
Q psy2915 489 ILLHLTRLVIASMTVGKDVSALFPDVVN-CMQTDNLELKKLVYLYLMNYAKSHP-----DMAIMAVNTFVKDCEDSNPLI 562 (883)
Q Consensus 489 ~~~~~l~kli~~~~~g~~~~~~~~~vi~-ll~s~~~~~kr~~yl~~~~~~~~~~-----~~~~l~~n~l~kdl~~~n~~v 562 (883)
...+++|+++..|..|++.+.+++++++ .+.+.+..+||+.|.|+....+.++ ..+.+++|.++|||++||+++
T Consensus 36 ~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyi 115 (948)
T KOG1058|consen 36 VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYI 115 (948)
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhh
Confidence 3469999999999999999999999998 7999999999999999999965544 244889999999999999999
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh-cCCChhHHHHHH
Q psy2915 563 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL-SDSNPMVVANAV 641 (883)
Q Consensus 563 r~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL-~D~d~~V~~~a~ 641 (883)
|+..+|.||++..+|+.+.++|.|+.++.|+++||||.|++|++.+|+.+...++| ..+.+...| .+.||.+..+|.
T Consensus 116 RG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAF 193 (948)
T KOG1058|consen 116 RGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAF 193 (948)
T ss_pred cchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999987777754 335555554 599999999999
Q ss_pred HHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc---CChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHH
Q psy2915 642 AALSEMNEASTSGVALIEMNAQTINKLLTALNE---CTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVL 718 (883)
Q Consensus 642 ~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~---~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~ 718 (883)
-.|..+.++ .++..+...+.+ .++-+|..|++++..-+...+.+...+++++.++|++++++|+|
T Consensus 194 i~L~~~D~E------------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~f 261 (948)
T KOG1058|consen 194 LMLFTTDPE------------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIF 261 (948)
T ss_pred HHHHhcCHH------------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhh
Confidence 999888754 556666665544 45778888999999988888888889999999999999999999
Q ss_pred HHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc--CCcchHHHHHHHHHHHHhhCchhHhhcc-ceeEEccCCCHHH
Q psy2915 719 SAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDILKHEM-KVFFVKYNDPIYV 795 (883)
Q Consensus 719 eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~--~~~niry~aL~~l~~l~~~~~~~~~~~~-~~~~~l~~dd~~I 795 (883)
||+-++..++ .. +++++.++..++.++. ++.|++.+.|+-+..+...+..+++... +++-.+..+|..+
T Consensus 262 Eaa~tlv~lS----~~----p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldv 333 (948)
T KOG1058|consen 262 EAAGTLVTLS----ND----PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDV 333 (948)
T ss_pred hhcceEEEcc----CC----HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccH
Confidence 9999999884 43 6677888888888875 5889999999999999988888888876 6777888889999
Q ss_pred HHHHHHHHHHhccccchhh--------------------------------------------------------hhHHH
Q psy2915 796 KLEKLDIMIRLASQANIAQ--------------------------------------------------------VNYVV 819 (883)
Q Consensus 796 r~~~l~lL~~l~~~~N~~~--------------------------------------------------------~~~~~ 819 (883)
|++++++.+.+++..|+++ .....
T Consensus 334 r~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 334 RSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHH
Confidence 9999999999999999987 01123
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHhhcccCCcHHHHHHHHHHHhcCcCccCCHHHHH
Q psy2915 820 QEAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEARASMIWIIGEYAERIDNADELL 878 (883)
Q Consensus 820 ~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~~~~~~~ 878 (883)
.+++..+++.+++||+.+..+|.++.+.+..+..+.+-.+.+|++|||++..+++...+
T Consensus 414 s~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~ 472 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVI 472 (948)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHH
Confidence 44666889999999999999999999999999999999999999999999888666544
No 19
>KOG1078|consensus
Probab=99.95 E-value=1.1e-26 Score=258.27 Aligned_cols=436 Identities=17% Similarity=0.272 Sum_probs=349.6
Q ss_pred Ccccccc-CcCcHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCC-----CcccchHHHHhhccCCChhHHHHHHHHHHH
Q psy2915 4 SKYFTTT-KKGEIFELKGELNSD--KKEKKREAVKKVIASMTVGK-----DVSALFPDVVNCMQTDNLELKKLVYLYLMN 75 (883)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~l~~~--~~~~~~~~l~kli~~~~~G~-----~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~ 75 (883)
|+-|+.. |..-++|.| .|+++ ++.+.+..+.|++|+..+|+ +...+|+.+.+++|++|..+||++|+++..
T Consensus 12 s~~f~~l~k~~vlqe~r-~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ike 90 (865)
T KOG1078|consen 12 SNVFQHLEKTTVLQEAR-TFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKE 90 (865)
T ss_pred CccccChhHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhh
Confidence 4445443 334467777 77755 79999999999999999996 667789999999999999999999999999
Q ss_pred hhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHH
Q psy2915 76 YAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEP 155 (883)
Q Consensus 76 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~ 155 (883)
....+.|. ++++|+ +.||.+..++..|+.|+|+|+.|-...+.......
T Consensus 91 ls~isedv-iivtss------------------------------lmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery 139 (865)
T KOG1078|consen 91 LSKISEDV-IIVTSS------------------------------LMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERY 139 (865)
T ss_pred ccccchhh-hhhhHH------------------------------HHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHH
Confidence 99999999 889999 99999999999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCc-cccccccc---
Q psy2915 156 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYW-QRNLSSRK--- 231 (883)
Q Consensus 156 v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~-~~~l~~~~--- 231 (883)
+++++.|+++.|+-.|...-++++...++.+. .|...+.+...+.+..|...|+..|..+-++.-. ..++++..
T Consensus 140 ~kqaivd~~~avSsaalvss~hll~~~~~~vk--rw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~ 217 (865)
T KOG1078|consen 140 MKQAIVDKNPAVSSAALVSSYHLLPISFDVVK--RWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRG 217 (865)
T ss_pred HHhHeeccccccchHHHHHHhhhhcccHHHHH--HHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccc
Confidence 99999999999999999999999999998884 4889999999888999999999999999664321 11222222
Q ss_pred -cCCCCcHHHHHh-hccccccC-------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHh
Q psy2915 232 -KQICWNLPYLMN-LSVIYPAW-------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTL 294 (883)
Q Consensus 232 -~~~~w~q~~~l~-l~~~~~~~-------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~l 294 (883)
...+++.+.+++ ..+...++ ++.+....| ++++.+..+.+..+. .+.+++..|..|
T Consensus 218 ~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r-------~l~pavs~Lq~f 290 (865)
T KOG1078|consen 218 SLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR-------ELAPAVSVLQLF 290 (865)
T ss_pred cccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh-------hcchHHHHHHHH
Confidence 122444544444 22222111 456666666 788877765443222 344477777778
Q ss_pred hcC-ChhHHHHHHHHHHHHHhhCchhHHhc-ccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHH
Q psy2915 295 LSS-EPEVQYVALRNINLIVQKRPDILKHE-MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDF 372 (883)
Q Consensus 295 L~~-~~~vr~~aL~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~ 372 (883)
+++ .+-+||.|++.|++++..+|..+.-. .+.-....|...+|-.-|..+|++.++++|++.+++..-.|..+.+.+|
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeF 370 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEF 370 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccc
Confidence 865 45899999999999999999887654 3444456788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH------------------------------hhhhhCCH---------
Q psy2915 373 VRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK------------------------------YAERIDNA--------- 413 (883)
Q Consensus 373 r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~------------------------------~~~~i~~~--------- 413 (883)
+.-++++|..++.+||-.....+++|..+|.++ .++.++++
T Consensus 371 Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rI 450 (865)
T KOG1078|consen 371 KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRI 450 (865)
T ss_pred eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHH
Confidence 999999999999999988888888888877765 22222221
Q ss_pred --------------HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHH
Q psy2915 414 --------------DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWR 479 (883)
Q Consensus 414 --------------~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ 479 (883)
...++.++++...|+..||+++++|++|+....+ ...+-+.-++..|..|. |.+|||||.+|..
T Consensus 451 LhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~l~~sI~vllkRc~~D~-DdevRdrAtf~l~ 528 (865)
T KOG1078|consen 451 LHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-VLLPSILVLLKRCLNDS-DDEVRDRATFYLK 528 (865)
T ss_pred HHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-CccccHHHHHHHHhcCc-hHHHHHHHHHHHH
Confidence 1345567777888999999999999999984443 35566777888899995 9999999999998
Q ss_pred hhc
Q psy2915 480 LLS 482 (883)
Q Consensus 480 ll~ 482 (883)
.+.
T Consensus 529 ~l~ 531 (865)
T KOG1078|consen 529 NLE 531 (865)
T ss_pred Hhh
Confidence 876
No 20
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.93 E-value=3.7e-24 Score=229.22 Aligned_cols=430 Identities=15% Similarity=0.205 Sum_probs=333.3
Q ss_pred cHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCC-----CcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhh
Q psy2915 14 EIFELKGELNSD--KKEKKREAVKKVIASMTVGK-----DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM 86 (883)
Q Consensus 14 ~~~~~~~~l~~~--~~~~~~~~l~kli~~~~~G~-----~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~ 86 (883)
-.++.++.|+++ +..+.++.+.++.|+...|+ ....+|+.+.++++.+|+.+|+-+|+++..+.....|+ +|
T Consensus 23 ~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-lm 101 (898)
T COG5240 23 LLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-LM 101 (898)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh-hH
Confidence 356788888866 68889999999999999997 44668999999999999999999999999999999999 89
Q ss_pred hcccccccccCccchhhhccccccccccccchhhhchhcCCCCH-HHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCCh
Q psy2915 87 AFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNP-LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDP 165 (883)
Q Consensus 87 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~-~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~ 165 (883)
++|+ ++||++...| .+|..|+|+|-.+-..+++......+.++..++++
T Consensus 102 ~tss------------------------------iMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~ 151 (898)
T COG5240 102 GTSS------------------------------IMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSM 151 (898)
T ss_pred HHHH------------------------------HHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccch
Confidence 9999 9999999888 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhCccccccccHHHHHHHHhc----------------CCChhHHHHHHHHHHhccccCCccc-ccc
Q psy2915 166 YVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS----------------DSNPMVVANAVAAILLLPRKSYWQR-NLS 228 (883)
Q Consensus 166 ~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~----------------D~d~~V~~~a~~~L~ei~~~~~~~~-~l~ 228 (883)
.+|-+|+...++++...-+.+ ..|....+++.- ..++.-...|+..|.++.++..... +++
T Consensus 152 a~~saalv~aYhLlp~~~~~~--~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv 229 (898)
T COG5240 152 ARRSAALVVAYHLLPNNFNQT--KRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLV 229 (898)
T ss_pred hhhhhHHHHhhhhccccHHHH--HHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999888888876555554 236655555331 3467778888888888876543211 222
Q ss_pred ccccCC-----CCcHHHHHh-hccccccC-------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHH
Q psy2915 229 SRKKQI-----CWNLPYLMN-LSVIYPAW-------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKL 287 (883)
Q Consensus 229 ~~~~~~-----~w~q~~~l~-l~~~~~~~-------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~ 287 (883)
..+... ..+-+.++| ......++ ++++.-..| ++++.++.+... ...++.+...
T Consensus 230 ~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~-----nv~~~~~~~~ 304 (898)
T COG5240 230 EHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE-----NVGSQFVDQT 304 (898)
T ss_pred HHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh-----ccCHHHHHHH
Confidence 222211 122222222 11111111 455555666 888888765432 1234577888
Q ss_pred hHHHHHhhcCC-hhHHHHHHHHHHHHHhhCchhHHhc-ccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhh
Q psy2915 288 APPLVTLLSSE-PEVQYVALRNINLIVQKRPDILKHE-MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYA 365 (883)
Q Consensus 288 ~~~L~~lL~~~-~~vr~~aL~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~ 365 (883)
+..|-.||++. ...||.|++.+++++..+|..+.-. ..+-....|.+..|..-|+..|.+..+++|+..+++.+-.|.
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfv 384 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFV 384 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 88999999765 5899999999999999999876543 333345678889999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH------------------------------hhhhhCCHH-
Q psy2915 366 TEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK------------------------------YAERIDNAD- 414 (883)
Q Consensus 366 ~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~------------------------------~~~~i~~~~- 414 (883)
.|.+..|+.-+|.++..++.+||.....++++|...|.++ +|+.++++.
T Consensus 385 hD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey 464 (898)
T COG5240 385 HDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEY 464 (898)
T ss_pred HhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999998888888888877665 233333321
Q ss_pred ----------------------HHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHhhcCCCChhhh
Q psy2915 415 ----------------------ELLESFLEGFHDENTQVQLQLLTAIVKLFLKR-PTDTQELVQQVLSLATQDSDNPDLR 471 (883)
Q Consensus 415 ----------------------~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~-~~~~~~~l~~ll~~~~~d~~~~evr 471 (883)
..++.+++++..|+..||.+++.|+.|+...- ..-..+.+..++..|.+| .|.+||
T Consensus 465 ~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD-~DdeVR 543 (898)
T COG5240 465 HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND-QDDEVR 543 (898)
T ss_pred hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc-ccHHHH
Confidence 34456677778889999999999999987543 224667788889999999 599999
Q ss_pred hhhHHHHHhhc
Q psy2915 472 DRGFIYWRLLS 482 (883)
Q Consensus 472 drA~~y~~ll~ 482 (883)
|||.+....+.
T Consensus 544 drAsf~l~~~~ 554 (898)
T COG5240 544 DRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhhh
Confidence 99998777665
No 21
>KOG1078|consensus
Probab=99.92 E-value=6.9e-24 Score=236.00 Aligned_cols=365 Identities=16% Similarity=0.303 Sum_probs=296.8
Q ss_pred hhhhhhhHHHHHhhccCC-----CcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHH
Q psy2915 488 YILLHLTRLVIASMTVGK-----DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLI 562 (883)
Q Consensus 488 ~~~~~~l~kli~~~~~g~-----~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~v 562 (883)
-+++..+.|++|.+.+|+ +....|+.+.+++++.|..+||++|++++.+.....|. .++++++.||.+..++.+
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-iivtsslmkD~t~~~d~y 116 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-IIVTSSLMKDMTGKEDLY 116 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-hhhhHHHHhhccCCCcch
Confidence 356688999999999997 46788999999999999999999999999998887777 789999999999999999
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHH
Q psy2915 563 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVA 642 (883)
Q Consensus 563 r~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~ 642 (883)
|..|+|+|+.+.+.++...+...+++++.|++|.|+.+|...-+++....++.+ .+|.+..++...+.+..|+.+|+.
T Consensus 117 r~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~v--krw~neiqea~~s~~~m~QyHalg 194 (865)
T KOG1078|consen 117 RAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVV--KRWANEVQEAVNSDNIMVQYHALG 194 (865)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHH--HHHHHhhhhccCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888887 489999999999999999999999
Q ss_pred HHHHHHhcCCCchhhHHhcHHHHHHHHHHcc---cCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHH
Q psy2915 643 ALSEMNEASTSGVALIEMNAQTINKLLTALN---ECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLS 719 (883)
Q Consensus 643 ~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~---~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~e 719 (883)
+++.+.+++. .++.+++.... ..+|...+..++.-....-.++.-...+.+.+..++.|...+|.+|
T Consensus 195 lLyqirk~dr----------la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~E 264 (865)
T KOG1078|consen 195 LLYQIRKNDR----------LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYE 264 (865)
T ss_pred HHHHHHhhhH----------HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHH
Confidence 9999987532 44555555443 2578888888887777655554333467788899999999999999
Q ss_pred HHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCC-CHHHHH
Q psy2915 720 AVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYND-PIYVKL 797 (883)
Q Consensus 720 ai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~d-d~~Ir~ 797 (883)
|++.+..+.+..+. ++.+ ....|..|++ ..+-+||.|.+.|+++++.+|..+...-.-+..+-+| +.+|..
T Consensus 265 aArai~~l~~~~~r--~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat 337 (865)
T KOG1078|consen 265 AARAIVSLPNTNSR--ELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIAT 337 (865)
T ss_pred HHHHHhhccccCHh--hcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhH
Confidence 99999998533322 1212 3444445555 4667999999999999999999876543333334445 999999
Q ss_pred HHHHHHHHhccccchhh----hhHHHHH--------HHHHHHHHHhhCCCchHHHHHHHHhhcccCC-------------
Q psy2915 798 EKLDIMIRLASQANIAQ----VNYVVQE--------AIVVIKDIFRKYPNKYETIISTLCENLDTLD------------- 852 (883)
Q Consensus 798 ~~l~lL~~l~~~~N~~~----~~~~~~e--------~i~~i~~l~~~~p~~~~~~i~~L~~~l~~i~------------- 852 (883)
.|+..|++.++++|++. +..++.| ++.+++.|+.+||.++...+++|...|++-+
T Consensus 338 ~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii 417 (865)
T KOG1078|consen 338 LAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAII 417 (865)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 99999999999999987 2333333 5669999999999999999999999886432
Q ss_pred -----cHHHHHHHHHHHhcCcCccC
Q psy2915 853 -----EPEARASMIWIIGEYAERID 872 (883)
Q Consensus 853 -----~~~~~~~~~w~lgey~~~~~ 872 (883)
+|++|...+--++||.+..+
T Consensus 418 ~iie~~pdsKe~~L~~LCefIEDce 442 (865)
T KOG1078|consen 418 DIIEENPDSKERGLEHLCEFIEDCE 442 (865)
T ss_pred HHHHhCcchhhHHHHHHHHHHHhcc
Confidence 55566666666666655443
No 22
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.85 E-value=1.1e-19 Score=195.31 Aligned_cols=359 Identities=17% Similarity=0.226 Sum_probs=274.2
Q ss_pred hhhhhhHHHHHhhccCCC-----cccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCH-HH
Q psy2915 489 ILLHLTRLVIASMTVGKD-----VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNP-LI 562 (883)
Q Consensus 489 ~~~~~l~kli~~~~~g~~-----~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~-~v 562 (883)
..+..+.++.+++..|+. ...+|+.+.++++++|..+|..+|.++..+....+|. .+.++++.||++.+.| .+
T Consensus 40 ~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-lm~tssiMkD~~~g~~~~~ 118 (898)
T COG5240 40 SARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-LMGTSSIMKDLNGGVPDDV 118 (898)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh-hHHHHHHHHhhccCCcccc
Confidence 344778889999988873 5778999999999999999999999999999988777 8899999999999887 99
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc------------
Q psy2915 563 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS------------ 630 (883)
Q Consensus 563 r~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~------------ 630 (883)
|..|+|+|-.+.+.+++..+...+.++..|+++.+|.+|+..-++++...-... .+|.+..++..-
T Consensus 119 kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~--~rw~ne~qeav~~l~q~p~~~~n~ 196 (898)
T COG5240 119 KPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT--KRWLNETQEAVLDLKQFPNQHGNE 196 (898)
T ss_pred ccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH--HHHHHHHHHHHhhHhhCcCccCCc
Confidence 999999999999999999999999999999999999999888877765444433 467766665431
Q ss_pred ----CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcc----cCChhhHHHHHHHHhccCCCChHHHHHHH
Q psy2915 631 ----DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALN----ECTEWGQVFILDSLSNYSPKDDREAQSIC 702 (883)
Q Consensus 631 ----D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~----~~~~w~qi~iL~lL~~~~~~~~~~~~~il 702 (883)
..++--+.+|+.+|..+.+.+. .+..++++.+. ..|...-+.++|....+-..++.....+-
T Consensus 197 gy~Pn~~~isqYHalGlLyq~kr~dk----------ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r 266 (898)
T COG5240 197 GYEPNGNPISQYHALGLLYQSKRTDK----------MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR 266 (898)
T ss_pred ccCCCCChHHHHHHHHHHHHHhcccH----------HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH
Confidence 3467788999999999876421 23334444332 34556666677777666666665555666
Q ss_pred HHHhHhhcCCChHHHHHHHHHHHHhhh-hCCCChhhHHHHHHHhhhHHHHhccC-CcchHHHHHHHHHHHHhhCchhHhh
Q psy2915 703 ERITPRLAHANAAVVLSAVKVLMKLME-MLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDILKH 780 (883)
Q Consensus 703 ~~l~~~l~~~~~aV~~eai~~i~~~~~-~~~~~~~l~~~~~~~~~~~L~~ll~~-~~niry~aL~~l~~l~~~~~~~~~~ 780 (883)
+.+..++.+...+|.+|+++.++.++. +++ +++.+ ..+..|..+|++ ..-.||.|++.++.|++..|..+.-
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 777888888999999999999999852 222 23334 445556666764 5568999999999999999988765
Q ss_pred ccceeEEccCC-CHHHHHHHHHHHHHhccccchhh----hhHHHHH--------HHHHHHHHHhhCCCchHHHHHHHHhh
Q psy2915 781 EMKVFFVKYND-PIYVKLEKLDIMIRLASQANIAQ----VNYVVQE--------AIVVIKDIFRKYPNKYETIISTLCEN 847 (883)
Q Consensus 781 ~~~~~~~l~~d-d~~Ir~~~l~lL~~l~~~~N~~~----~~~~~~e--------~i~~i~~l~~~~p~~~~~~i~~L~~~ 847 (883)
+-+.+..+-+| +.+|..-|+..|++..+++|+.. +..++.+ ++..++.|+-+||.+...++.+|.+.
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~ 420 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS 420 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 54444445555 99999999999999999999987 2333333 56688999999999998889888887
Q ss_pred cccCCcHHHHHHHHHHHhc
Q psy2915 848 LDTLDEPEARASMIWIIGE 866 (883)
Q Consensus 848 l~~i~~~~~~~~~~w~lge 866 (883)
|.+-+.-+.|.+++-.|..
T Consensus 421 L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred HHhcccchHHHHHHHHHHH
Confidence 7554444455444433333
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=2.8e-15 Score=188.51 Aligned_cols=701 Identities=13% Similarity=0.140 Sum_probs=423.6
Q ss_pred cCcHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCCC-------cccchHHHHhhccCCChhHHHHHHHHHHHhhccCCc
Q psy2915 12 KGEIFELKGELNSD--KKEKKREAVKKVIASMTVGKD-------VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD 82 (883)
Q Consensus 12 ~~~~~~~~~~l~~~--~~~~~~~~l~kli~~~~~G~~-------~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~ 82 (883)
..++..+-+.|.+. +.+.|+.++.++..+...|.+ .+...|..+.++.+.+...|..+--.+...+.. ++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~ 90 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-ED 90 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HH
Confidence 45677788888866 778899999999988888854 456788889999999988888766555555543 33
Q ss_pred chhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCch---h------h-hHHH
Q psy2915 83 MAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVD---K------I-TEYL 152 (883)
Q Consensus 83 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~---~------~-~~~l 152 (883)
....+... -+++++.+-|++.++..|..|.++|.++... + . .+-.
T Consensus 91 nk~~Iv~~-------------------------GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~Ga 145 (2102)
T PLN03200 91 LRVKVLLG-------------------------GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGV 145 (2102)
T ss_pred HHHHHHHc-------------------------CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCC
Confidence 22222222 3577788889999999999998888887542 1 1 1345
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHHHhhhCcccc---ccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcccc
Q psy2915 153 CEPLRKCLKDE---DPYVRKTAAVCVAKLYDINAQLV---EDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRN 226 (883)
Q Consensus 153 ~~~v~~~l~d~---~~~VRk~A~~al~kl~~~~p~~~---~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~ 226 (883)
+|.+..++.+. +..|+..|+.++..+....++.. -+.+.++.+.++|++.|+.++..|+.++..++...+...
T Consensus 146 Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~- 224 (2102)
T PLN03200 146 VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSI- 224 (2102)
T ss_pred hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHH-
Confidence 66777777765 33477788889988887555432 246788999999999999999999998887765433211
Q ss_pred ccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcC--ChhHHHH
Q psy2915 227 LSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS--EPEVQYV 304 (883)
Q Consensus 227 l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~vr~~ 304 (883)
..++ -..++++|+.+|++ ++.+|..
T Consensus 225 -------------------------------------~aVI----------------eaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 225 -------------------------------------SKVL----------------DAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred -------------------------------------HHHH----------------HCCCHHHHHHHHccCCChHHHHH
Confidence 0000 01234555555532 2345555
Q ss_pred HHHHHHHHHhhCchh---HHhc--cccee-eccC---------CCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhc-
Q psy2915 305 ALRNINLIVQKRPDI---LKHE--MKVFF-VKYN---------DPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEV- 368 (883)
Q Consensus 305 aL~~l~~l~~~~~~~---~~~~--~~~~~-~l~~---------~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~- 368 (883)
|..+|..|+...++. +..+ +..+. ++.. .+...++.|+..|..+|... ..++..|.+.+...
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~r 329 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM--SALILYLGELSESPR 329 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccc
Confidence 555555555433221 1111 11000 1111 12334556666666655432 22333333222111
Q ss_pred CHHHHHHHHHHHHHHHhhchhh--------------------------------------------------HHHHHHHH
Q psy2915 369 DVDFVRKAVRAIGRCAIKVEQS--------------------------------------------------AERCVSTL 398 (883)
Q Consensus 369 d~~~r~~ai~aI~~la~k~~~~--------------------------------------------------~~~~v~~L 398 (883)
|.....+++.++..+...+... ....+..|
T Consensus 330 d~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~L 409 (2102)
T PLN03200 330 SPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVL 409 (2102)
T ss_pred hHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhh
Confidence 2222222222222221111000 01122233
Q ss_pred HHHHHhH-----------hhhhhCCHHH---------HHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchH-----HHH
Q psy2915 399 LDLIQTK-----------YAERIDNADE---------LLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDT-----QEL 453 (883)
Q Consensus 399 l~lL~~~-----------~~~~i~~~~~---------il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~-----~~~ 453 (883)
+.+++.. .....+...+ .++.+.+.+...+..+|..++.+++-+....+... ...
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 3333321 0000000000 12233333444455555555555555543322111 123
Q ss_pred HHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHH
Q psy2915 454 VQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYL 533 (883)
Q Consensus 454 l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~ 533 (883)
++.+.++..+. ++++|+.|.....-+..+. +..+.++.. ...++.+++++.+.+...|+.+..++
T Consensus 490 IP~LV~LL~s~--~~~iqeeAawAL~NLa~~~------~qir~iV~~-------aGAIppLV~LL~sgd~~~q~~Aa~AL 554 (2102)
T PLN03200 490 IPPLVQLLETG--SQKAKEDSATVLWNLCCHS------EDIRACVES-------AGAVPALLWLLKNGGPKGQEIAAKTL 554 (2102)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCc------HHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444444432 4566666654333333321 111222211 24567788899999988888888887
Q ss_pred HhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh----hhh------hHHHHHHHHhhcCCCChHHHhhHHH
Q psy2915 534 MNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV----DKI------TEYLCEPLRKCLKDEDPYVRKTAAV 603 (883)
Q Consensus 534 ~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~----~~~------~~~l~~~l~~~l~d~~~~VRk~A~~ 603 (883)
..+....+.- .++.+...+.++++.++.-+++.++++.. .+. ...-++.+.+++.++++.+++.|+.
T Consensus 555 ~nLi~~~d~~---~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~ 631 (2102)
T PLN03200 555 TKLVRTADAA---TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAAS 631 (2102)
T ss_pred HHHHhccchh---HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHH
Confidence 7775433222 33566667888899999999999987622 111 1236788999999999999999999
Q ss_pred HHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhc-HHHHHHHHHHcccCChhh
Q psy2915 604 CVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMN-AQTINKLLTALNECTEWG 679 (883)
Q Consensus 604 al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~-~~~~~~L~~~l~~~~~w~ 679 (883)
++.+++...++. +.+.+.++.+..+|.+++..++..|..+|..+.... +......++ ...+..|++.+...+.=.
T Consensus 632 iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~-~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI-KENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 999999855543 334567899999999999999999999999998532 212222222 235667888887888877
Q ss_pred HHHHHHHHhccCCCChHHH----HHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHH--HHHhhhHHHHhc
Q psy2915 680 QVFILDSLSNYSPKDDREA----QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTL--TKKLAPPLVTLL 753 (883)
Q Consensus 680 qi~iL~lL~~~~~~~~~~~----~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~--~~~~~~~L~~ll 753 (883)
....+..|..+....+... ...++.+...+++.++.++-.|+.++..++...+.+..+ ... ...+..+|+.+|
T Consensus 711 ~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~-~~~~~~~g~v~~l~~~L 789 (2102)
T PLN03200 711 AEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL-KDSVQCRGTVLALVDLL 789 (2102)
T ss_pred HHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH-HHHHHHhCcHHHHHHHH
Confidence 8888888888765443221 356889999999999999999999999997544443212 122 234566788888
Q ss_pred c-CCcchHHH--HHHHHHHHHhhC-------ch-h-Hh---hcc-ceeEEccCCCHHHHHHHHHHHHHhccccchhh
Q psy2915 754 S-SEPEVQYV--ALRNINLIVQKR-------PD-I-LK---HEM-KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 814 (883)
Q Consensus 754 ~-~~~niry~--aL~~l~~l~~~~-------~~-~-~~---~~~-~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~ 814 (883)
+ .+.+.--+ +|+.+..++... |. . +. ..+ +.+.|+.+..+.+..+++++|-++|.+.-.-.
T Consensus 790 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~ 866 (2102)
T PLN03200 790 NSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVL 866 (2102)
T ss_pred hcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHH
Confidence 7 46666555 888888888742 11 1 21 124 34478877799999999999999998776543
No 24
>KOG2023|consensus
Probab=99.76 E-value=2.2e-15 Score=165.31 Aligned_cols=533 Identities=17% Similarity=0.184 Sum_probs=339.4
Q ss_pred HHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHH
Q psy2915 54 VVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIR 133 (883)
Q Consensus 54 v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr 133 (883)
+++-..|+|...++-+-..+.++.. +||.-.-.+- +.-++++.+...|
T Consensus 18 lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~~-------------------------------IL~~~~~~d~~~R 65 (885)
T KOG2023|consen 18 LLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLIY-------------------------------ILIRAKSEDVPTR 65 (885)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhc-ccchhceeeE-------------------------------EEecccccchhHH
Confidence 3455667888888888777777644 7776332221 3445677777788
Q ss_pred HHHHHHhc-------cCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCc-cccccccHHHHHHHHhcCCChh
Q psy2915 134 ALAVRTMG-------CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA-QLVEDQGFLDQLKDLLSDSNPM 205 (883)
Q Consensus 134 ~lALr~L~-------~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p-~~~~~~~~~~~L~~lL~D~d~~ 205 (883)
++|=--|- .--.++...++-..+.+++.|+++.||-..-.-+..++.... +.+ +...+.|.++|+.+|..
T Consensus 66 s~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w--pelLp~L~~~L~s~d~n 143 (885)
T KOG2023|consen 66 SLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHW--PELLPQLCELLDSPDYN 143 (885)
T ss_pred HHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccc--hhHHHHHHHHhcCCccc
Confidence 87732222 222356777788888999999999999988877777765332 223 44678999999999999
Q ss_pred HHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHH
Q psy2915 206 VVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTK 285 (883)
Q Consensus 206 V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~ 285 (883)
..-.|+.+|..|+++.+...+ +++...-++
T Consensus 144 ~~EgA~~AL~KIcEDsa~~ld--------------------------------------------------s~~~~rpl~ 173 (885)
T KOG2023|consen 144 TCEGAFGALQKICEDSAQFLD--------------------------------------------------SDVLTRPLN 173 (885)
T ss_pred ccchhHHHHHHHHhhhHHHHh--------------------------------------------------hhcccCchH
Confidence 999999999999987654330 011112355
Q ss_pred HHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHh
Q psy2915 286 KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEY 364 (883)
Q Consensus 286 ~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~ 364 (883)
..++.+..+.+ .+|.+|-.|+..++++.-..++.+--|++.| ++.|...
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~F------------------------------le~lFal 223 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKF------------------------------LEILFAL 223 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHH------------------------------HHHHHHH
Confidence 67788888886 5679999999999998888777766655555 4555555
Q ss_pred hhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q psy2915 365 ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFL 444 (883)
Q Consensus 365 ~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~ 444 (883)
+.|.++++|+.+.+++.-+-+-.|.. .
T Consensus 224 anD~~~eVRk~vC~alv~Llevr~dk------------------l----------------------------------- 250 (885)
T KOG2023|consen 224 ANDEDPEVRKNVCRALVFLLEVRPDK------------------L----------------------------------- 250 (885)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcHHh------------------c-----------------------------------
Confidence 56779999999988886554322211 0
Q ss_pred cCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCc-hhhhhhhhhHHHHHhhccCCCcccchHHHHH------h
Q psy2915 445 KRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGN-TFYILLHLTRLVIASMTVGKDVSALFPDVVN------C 517 (883)
Q Consensus 445 ~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~-~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~------l 517 (883)
-++...++.++++...+. |.+|--.|+|+|-.+...+ -...+...+.+++..+..|--.+..-.-..+ .
T Consensus 251 --~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 251 --VPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred --ccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 124445566666654433 6778888888887775544 2334456677777766555322211111111 0
Q ss_pred hcccchhHHHHHHHHHHhhc------cCCchhhHhHHHHHHhhcCCC----CHHHH---HHHHHHhcCCChhhhhHHHHH
Q psy2915 518 MQTDNLELKKLVYLYLMNYA------KSHPDMAIMAVNTFVKDCEDS----NPLIR---ALAVRTMGCIRVDKITEYLCE 584 (883)
Q Consensus 518 l~s~~~~~kr~~yl~~~~~~------~~~~~~~~l~~n~l~kdl~~~----n~~vr---~~AL~~L~~i~~~~~~~~l~~ 584 (883)
..+.+...|- -+.--..-+ +++++- .+..|+ +...| ++||..|+++-..++.+.+.|
T Consensus 327 vpDreeDIkP-Rfhksk~~~~~~~~~~eDddd---------De~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~P 396 (885)
T KOG2023|consen 327 VPDREEDIKP-RFHKSKEHGNGEDADDEDDDD---------DEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLP 396 (885)
T ss_pred CCchhhhccc-hhhhchhccCccccccccccc---------cccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHH
Confidence 0011111110 000000000 000000 000011 12333 678889999999999999999
Q ss_pred HHHhhcCCCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcH
Q psy2915 585 PLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNA 662 (883)
Q Consensus 585 ~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~ 662 (883)
.+++.|.+..|.||.++++|+|.+..-.-+-+. -+.+++.+.++|+|+.|-||.-++=.|...++.--. +..-.+..
T Consensus 397 lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~-~~~~~~f~ 475 (885)
T KOG2023|consen 397 LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQ-DSRDEYFK 475 (885)
T ss_pred HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhc-CChHhhhH
Confidence 999999999999999999999999873322221 135789999999999999999888888777642110 00112334
Q ss_pred HHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHh-------HhhcCCChHHHHHHHHHHHHhh-hhCCCC
Q psy2915 663 QTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERIT-------PRLAHANAAVVLSAVKVLMKLM-EMLPGE 734 (883)
Q Consensus 663 ~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~-------~~l~~~~~aV~~eai~~i~~~~-~~~~~~ 734 (883)
+....+++.+-+.+-|.|-.....++.+.-.-.++.-..++.+. ..-++.|--|+|-||.++-.-. .++.+
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~- 554 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK- 554 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc-
Confidence 56667777777899999999888888775433222222233222 2236789999999999986543 22322
Q ss_pred hhhHHHHHHHhhhHHHH---hcc-CCcchHHHHHHHHHHHHhhC
Q psy2915 735 GDFVSTLTKKLAPPLVT---LLS-SEPEVQYVALRNINLIVQKR 774 (883)
Q Consensus 735 ~~l~~~~~~~~~~~L~~---ll~-~~~niry~aL~~l~~l~~~~ 774 (883)
+..++.+.|||+. +++ ++.++ |=-|+.+..++...
T Consensus 555 ----~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL 593 (885)
T KOG2023|consen 555 ----PAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASAL 593 (885)
T ss_pred ----HHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHH
Confidence 3446678888884 344 45663 55577787777654
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.74 E-value=2.9e-13 Score=170.73 Aligned_cols=702 Identities=14% Similarity=0.109 Sum_probs=441.6
Q ss_pred ChhHHHHHHHHHHHhhccCCcchhhhc-ccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHh
Q psy2915 62 NLELKKLVYLYLMNYAKSHPDMAIMAF-STFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTM 140 (883)
Q Consensus 62 ~~~~k~~~y~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L 140 (883)
+...|+-+---+..+++.+++--..+. +. -+|+.|..-|.++++.++..|+.++
T Consensus 28 s~~~~~~Al~~Lr~Lak~~~enR~~Ia~~a-------------------------GaIP~LV~lL~sg~~~vk~nAaaaL 82 (2102)
T PLN03200 28 SPQEKELTTARLLELAKTREEARKAIGSHS-------------------------QAMPLLVSLLRSGTLGAKVNAAAVL 82 (2102)
T ss_pred CHHHHHHHHHHHHHHHhcChHHHHHHHHcc-------------------------CcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566676665556666776665211111 11 1355588888999999999988887
Q ss_pred ccCCch-hhh-----HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCc-cc-----cccccHHHHHHHHhcCC---Chh
Q psy2915 141 GCIRVD-KIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA-QL-----VEDQGFLDQLKDLLSDS---NPM 205 (883)
Q Consensus 141 ~~i~~~-~~~-----~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p-~~-----~~~~~~~~~L~~lL~D~---d~~ 205 (883)
.++... +.. ...++.+..+|.+.++..|..|+.++..+-.... +. +..++.++.|..++.+. |..
T Consensus 83 ~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 83 GVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 776543 222 4456778888988899999999999999875432 21 22466788899988875 455
Q ss_pred HHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHH
Q psy2915 206 VVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTK 285 (883)
Q Consensus 206 V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~ 285 (883)
+...|+.+|..++....... +.+ .-.
T Consensus 163 L~~~Av~AL~nLs~~~en~~--------------------------------------~~I----------------Iea 188 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFW--------------------------------------SAT----------------LEA 188 (2102)
T ss_pred HHHHHHHHHHHHhcCccchH--------------------------------------HHH----------------HHc
Confidence 66777778877776443221 111 112
Q ss_pred HHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHH---hc--cc-ceeecc-CCCHHHHHHHHHHHHHhcCh--hhHH
Q psy2915 286 KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILK---HE--MK-VFFVKY-NDPIYVKLEKLDIMIRLASQ--ANIA 355 (883)
Q Consensus 286 ~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~---~~--~~-~~~~l~-~~~~~Ir~~aL~iL~~l~~~--~nv~ 355 (883)
..++.++.+|+ .++.++..|...+..++...++... .. +. .+.++. +++..+|..|..+|..++.. ++..
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~ 268 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQ 268 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHH
Confidence 35677888885 4568888888888888776553221 11 22 233554 45678999999999999964 4443
Q ss_pred H-----HHHHHHHhhhhcC---------HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH-----hhhhhCCHHH-
Q psy2915 356 Q-----VLSELKEYATEVD---------VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK-----YAERIDNADE- 415 (883)
Q Consensus 356 ~-----Il~eL~~~~~~~d---------~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~-----~~~~i~~~~~- 415 (883)
. .++.|.+++...+ ..+++.++.+++.++.-.+ ..+..|.+++... ..+......+
T Consensus 269 ~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~----~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 269 AIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS----ALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch----hhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 3 3455555654333 4568899999998875322 2333333333211 0000000011
Q ss_pred ------------------HHHHHhhhhc-CCCHHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHHHhhcCCCChhhhh
Q psy2915 416 ------------------LLESFLEGFH-DENTQVQLQLLTAIVKLFLKRPT----DTQELVQQVLSLATQDSDNPDLRD 472 (883)
Q Consensus 416 ------------------il~~l~~~~~-~~~~~vr~~~L~al~Kl~~~~~~----~~~~~l~~ll~~~~~d~~~~evrd 472 (883)
+...+.+-+. ..+..++.....|++.++..... .-.+....++.+.... +.++|.
T Consensus 345 l~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~--~~evQ~ 422 (2102)
T PLN03200 345 LMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMA--TADVQE 422 (2102)
T ss_pred HHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccC--CHHHHH
Confidence 1122223222 22333444444454333222100 0112233344444443 578998
Q ss_pred hhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hH
Q psy2915 473 RGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MA 547 (883)
Q Consensus 473 rA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~ 547 (883)
.++.-...+..+.. +..+.++. ..+...+++++.+.+...++.+...++.+...+++... =+
T Consensus 423 ~Av~aL~~L~~~~~-----e~~~aIi~--------~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 423 ELIRALSSLCCGKG-----GLWEALGG--------REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred HHHHHHHHHhCCCH-----HHHHHHHH--------cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 88765544443321 11111111 23467788999988888888888888888766555332 36
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh--hh---hh--HHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccccc
Q psy2915 548 VNTFVKDCEDSNPLIRALAVRTMGCIRV--DK---IT--EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQG 620 (883)
Q Consensus 548 ~n~l~kdl~~~n~~vr~~AL~~L~~i~~--~~---~~--~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~ 620 (883)
++.|.+.|.++++.++..|..+|+++.. ++ .. ...+|.+.+.|++.++.+|+.|+.++.++...... .
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~ 564 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----A 564 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----h
Confidence 7888999999999999999999998753 22 22 13567888999999999999999999999764322 2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhH--HhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHH
Q psy2915 621 FLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI--EMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREA 698 (883)
Q Consensus 621 ~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~--~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 698 (883)
-++.+..+|..+++.++..++.++..+..-....+... ......+..|.+.+...++-.+.....+|..++...++..
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH
Confidence 34667788888889999999998887754211110000 0112456677777777888888888888988876655432
Q ss_pred -----HHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHH
Q psy2915 699 -----QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIV 771 (883)
Q Consensus 699 -----~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~ 771 (883)
...++++..++++.+..+..+++.++.++.. +..++-...+++ .++++|+.++. .+++++-.++..+..++
T Consensus 645 ~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~--~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 645 ESLATDEIINPCIKLLTNNTEAVATQSARALAALSR--SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL 722 (2102)
T ss_pred HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh--CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 2457889999999999999999999999864 222111122233 57899999997 47789999999999988
Q ss_pred hhCch---hHhhc-ccee-EEccCCCHHHHHHHHHHHHHhccccchhh------------------------hhHHHHHH
Q psy2915 772 QKRPD---ILKHE-MKVF-FVKYNDPIYVKLEKLDIMIRLASQANIAQ------------------------VNYVVQEA 822 (883)
Q Consensus 772 ~~~~~---~~~~~-~~~~-~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~------------------------~~~~~~e~ 822 (883)
..... +.... +..+ ..+.+++...|+.|.-.|..||....+.. ......|+
T Consensus 723 ~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~a 802 (2102)
T PLN03200 723 SDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA 802 (2102)
T ss_pred cCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHH
Confidence 85421 12222 3322 34566789999999999999998777554 11234467
Q ss_pred HHHHHHHHhh-------CCCchH-----HHHHHHHhhcccCCcHHHHHHHHHHHhcCcC
Q psy2915 823 IVVIKDIFRK-------YPNKYE-----TIISTLCENLDTLDEPEARASMIWIIGEYAE 869 (883)
Q Consensus 823 i~~i~~l~~~-------~p~~~~-----~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~ 869 (883)
+..+..+.+. +|.++. .-+..|.+++ ...+|..-.-++-++.-.+.
T Consensus 803 l~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 803 LEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhc
Confidence 7777777773 233332 2344555555 55667766666666655443
No 26
>KOG1824|consensus
Probab=99.70 E-value=1.2e-12 Score=148.98 Aligned_cols=664 Identities=15% Similarity=0.200 Sum_probs=378.1
Q ss_pred CChhHHHHHHHHHHHHhhhCcccccc--ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccc-----cCCC
Q psy2915 163 EDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRK-----KQIC 235 (883)
Q Consensus 163 ~~~~VRk~A~~al~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~-----~~~~ 235 (883)
.+|.|||+|+.|+..+....+|.+++ ...-|.+...+.|....|....+.++..+.+.-+.......-. .+.+
T Consensus 344 ~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 344 MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP 423 (1233)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc
Confidence 37899999999999999888887753 1123556666779999999999998888876544322222111 1112
Q ss_pred ---CcH----HHHHh-hccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc---CChhHHHH
Q psy2915 236 ---WNL----PYLMN-LSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS---SEPEVQYV 304 (883)
Q Consensus 236 ---w~q----~~~l~-l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~---~~~~vr~~ 304 (883)
|.. ..+++ +.+-.... +.-..+.|...+..+....|+. ..+.+-..++.+..-|. +.+|.+..
T Consensus 424 s~~~~L~~~~~~iVkai~~qlr~k---s~kt~~~cf~lL~eli~~lp~~---l~~~~~slvpgI~~~l~DkSsss~~ki~ 497 (1233)
T KOG1824|consen 424 SDLSMLSDQVPLIVKAIQKQLREK---SVKTRQGCFLLLTELINVLPGA---LAQHIPSLVPGIIYSLNDKSSSSNLKID 497 (1233)
T ss_pred cchHHHHhhhHHHHHHHHHHHhhc---cccchhhHHHHHHHHHHhCcch---hhhcccccchhhhhhcCCccchHHHHHH
Confidence 322 22333 32222211 1112336666776666666542 12223344555555553 45699999
Q ss_pred HHHHHHHHHh-hCchhHHhccccee-----eccCCCHHHHHHHHHHHHHhcC------h---hhHHHHHHHHH-----Hh
Q psy2915 305 ALRNINLIVQ-KRPDILKHEMKVFF-----VKYNDPIYVKLEKLDIMIRLAS------Q---ANIAQVLSELK-----EY 364 (883)
Q Consensus 305 aL~~l~~l~~-~~~~~~~~~~~~~~-----~l~~~~~~Ir~~aL~iL~~l~~------~---~nv~~Il~eL~-----~~ 364 (883)
+|.-+..... ..|..|.+|...+. |..++=..|-..||-+...+|. + -|...-+.++. .+
T Consensus 498 ~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL 577 (1233)
T KOG1824|consen 498 ALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRL 577 (1233)
T ss_pred HHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHH
Confidence 9988866655 45789999964332 4455555588999999988873 1 22222222222 22
Q ss_pred -hhhcCHHHHHHHHHHHHHHHhhchhh----HHHHHHHHHHHHHhH---------hh---------hhhCCHHHHHHHHh
Q psy2915 365 -ATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTK---------YA---------ERIDNADELLESFL 421 (883)
Q Consensus 365 -~~~~d~~~r~~ai~aI~~la~k~~~~----~~~~v~~Ll~lL~~~---------~~---------~~i~~~~~il~~l~ 421 (883)
.++.|.++|..+|.++|++...|... .+.++..+++.++++ +. +..+...++++.+.
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 46889999999999999998877653 477888888888876 00 11222333343333
Q ss_pred hhhcCCCHHHHHHHHHHHHH---Hhhc-CCc-hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC-chhh--hhhhh
Q psy2915 422 EGFHDENTQVQLQLLTAIVK---LFLK-RPT-DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG-NTFY--ILLHL 493 (883)
Q Consensus 422 ~~~~~~~~~vr~~~L~al~K---l~~~-~~~-~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~-~~~~--~~~~~ 493 (883)
.-..+.....|.+.++++-| .+.. .|. ..+.++.++..+.... |.-+-+.|..+...+-.. +... .....
T Consensus 658 ~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises--dlhvt~~a~~~L~tl~~~~ps~l~~~~~~i 735 (1233)
T KOG1824|consen 658 SFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES--DLHVTQLAVAFLTTLAIIQPSSLLKISNPI 735 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHhcccHHHHHHhhhh
Confidence 22222222334444444433 3322 122 3555555555554443 577777776555433222 1100 00011
Q ss_pred hHHHHHhhc----cCC---------------Ccc-cchHHHHHhhcccchh-----HHHHHHHHHHhhc----cCCchhh
Q psy2915 494 TRLVIASMT----VGK---------------DVS-ALFPDVVNCMQTDNLE-----LKKLVYLYLMNYA----KSHPDMA 544 (883)
Q Consensus 494 l~kli~~~~----~g~---------------~~~-~~~~~vi~ll~s~~~~-----~kr~~yl~~~~~~----~~~~~~~ 544 (883)
+..++.... +|. ... ..+.....++..+.+. +.|-+|..+..+. ..-++..
T Consensus 736 L~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s 815 (1233)
T KOG1824|consen 736 LDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKS 815 (1233)
T ss_pred HHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccc
Confidence 112221111 111 001 1144444445444322 3344555444431 1122223
Q ss_pred HhHHHHHHhhcCCC--CHHHHHHHHHHhcCCCh---hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccc
Q psy2915 545 IMAVNTFVKDCEDS--NPLIRALAVRTMGCIRV---DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ 619 (883)
Q Consensus 545 ~l~~n~l~kdl~~~--n~~vr~~AL~~L~~i~~---~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~ 619 (883)
.-++-.+.+|++++ +.-+|..|+-++|.+|- ..-...+-..+.+++++++..|+++|+.|+|.+.-- +. +
T Consensus 816 ~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg--nl---~ 890 (1233)
T KOG1824|consen 816 KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG--NL---P 890 (1233)
T ss_pred hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC--ch---H
Confidence 33455667777754 57889999999998844 223333445678899999999999999999988431 11 2
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH
Q psy2915 620 GFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ 699 (883)
Q Consensus 620 ~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~ 699 (883)
+|+|.+.... +.+|-=+.--+..+.+..... ....+.+.++..+.-|.+......+..+-.+-++|+++.-.++ .
T Consensus 891 ~yLpfil~qi-~sqpk~QyLLLhSlkevi~~~-svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep---e 965 (1233)
T KOG1824|consen 891 KYLPFILEQI-ESQPKRQYLLLHSLKEVIVSA-SVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP---E 965 (1233)
T ss_pred hHHHHHHHHH-hcchHhHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh---H
Confidence 3445544443 356666666666666665431 1112334444555555565555566777778888888877666 3
Q ss_pred HHHHHHhHhhcCCChHHH---HHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCch
Q psy2915 700 SICERITPRLAHANAAVV---LSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPD 776 (883)
Q Consensus 700 ~il~~l~~~l~~~~~aV~---~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~ 776 (883)
.+++.+...+.+..+..+ ..|++..+. +.++.+-....+.+++.+..+-+.+.++|-++|..++..+...|+
T Consensus 966 sLlpkL~~~~~S~a~~~rs~vvsavKfsis-----d~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 966 SLLPKLKLLLRSEASNTRSSVVSAVKFSIS-----DQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred HHHHHHHHHhcCCCcchhhhhhheeeeeec-----CCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 568888888887776444 444444332 232233233334566655444457889999999999999998887
Q ss_pred hHhh-----------------------ccceeEEccCCCHHHHHHHHHHHHHhccc----cchhh----------hhHHH
Q psy2915 777 ILKH-----------------------EMKVFFVKYNDPIYVKLEKLDIMIRLASQ----ANIAQ----------VNYVV 819 (883)
Q Consensus 777 ~~~~-----------------------~~~~~~~l~~dd~~Ir~~~l~lL~~l~~~----~N~~~----------~~~~~ 819 (883)
++.. .+.-|.---||...+|+.|.|-+|.+.+. -++.. ..|-+
T Consensus 1041 lIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dhydi 1120 (1233)
T KOG1824|consen 1041 LIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDHYDI 1120 (1233)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchhhHH
Confidence 6541 01233333466788999999999998753 22222 11111
Q ss_pred HH-HHHHHHHHHhhCCCchHHHHHHHHhhcc
Q psy2915 820 QE-AIVVIKDIFRKYPNKYETIISTLCENLD 849 (883)
Q Consensus 820 ~e-~i~~i~~l~~~~p~~~~~~i~~L~~~l~ 849 (883)
.= .-.-+..|+...|.....-+.++++-++
T Consensus 1121 Kmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1121 KMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred HHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 11 1124466667778776666677776653
No 27
>KOG2171|consensus
Probab=99.62 E-value=8.9e-12 Score=146.65 Aligned_cols=509 Identities=18% Similarity=0.171 Sum_probs=293.3
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhc-CCCChhHHHHHHHHHHHHhhhCccccccccHHHHH
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 195 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l-~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L 195 (883)
++.+|...|.+|+-.+|..|=+++.++..++- +.+.+...+ ...+|-||.-|+.-+-|+..+.=..+. ...-..|
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e~~~si 80 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AEVQQSI 80 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HHHHHHH
Confidence 35568888999999999999999987643222 444444444 446899999999988887654322221 1112222
Q ss_pred -----HHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHh
Q psy2915 196 -----KDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLM 270 (883)
Q Consensus 196 -----~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~ 270 (883)
.-...++.+.|++....++.++++..-... |.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~----------WP--------------------------------- 117 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK----------WP--------------------------------- 117 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc----------hH---------------------------------
Confidence 334468899999888888888876431110 11
Q ss_pred hcCCCChhhHHHHHHHHhHHHHHhh-cCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhc
Q psy2915 271 EMLPGEGDFVSTLTKKLAPPLVTLL-SSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLA 349 (883)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~ 349 (883)
.+.+.|..-. |.++..|..|+..+..+....+..+.+|++.|
T Consensus 118 ---------------ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l---------------------- 160 (1075)
T KOG2171|consen 118 ---------------ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDL---------------------- 160 (1075)
T ss_pred ---------------HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHH----------------------
Confidence 1122222223 34568899999888888887777777764322
Q ss_pred ChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCH
Q psy2915 350 SQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENT 429 (883)
Q Consensus 350 ~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~ 429 (883)
..-+.+...+.+..+|..++++++..+.-.+.. ...++.+..++ |.++..+-+-....+.
T Consensus 161 --------~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~-~~~~~~~~~ll-----------P~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 161 --------LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENN-KSEVDKFRDLL-----------PSLLNVLQEVIQDGDD 220 (1075)
T ss_pred --------HHHHHHhccCCcchHHHHHHHHHHHHHHHhccc-hHHHHHHHHHh-----------HHHHHHhHhhhhccch
Confidence 333334444544447777777777666543310 01111111111 1111112122222233
Q ss_pred HHHHHHHHHHHHHhhcCCc----hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC-ch----hh-hhhhhhHHHHH
Q psy2915 430 QVQLQLLTAIVKLFLKRPT----DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG-NT----FY-ILLHLTRLVIA 499 (883)
Q Consensus 430 ~vr~~~L~al~Kl~~~~~~----~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~-~~----~~-~~~~~l~kli~ 499 (883)
..-...+.++..+....|. ...+++.-.+..+.+.+-++.+|..|.+..-.+... +. .+ .....+-.++.
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHH
Confidence 3333334444444433333 344445555556667667999999998776655433 11 11 12222333344
Q ss_pred hhccCCCcc-cchHHHHHhhcccc-hhHHHHHHHHHHhhccC-C-chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh
Q psy2915 500 SMTVGKDVS-ALFPDVVNCMQTDN-LELKKLVYLYLMNYAKS-H-PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV 575 (883)
Q Consensus 500 ~~~~g~~~~-~~~~~vi~ll~s~~-~~~kr~~yl~~~~~~~~-~-~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~ 575 (883)
.|+.+.+.. |.-.+. ...++ ..-.+++--++-.++-. . ..+...+.+.+.+-++|++...|.+||.+++.++.
T Consensus 301 ~mte~~~D~ew~~~d~---~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E 377 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDD---LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE 377 (1075)
T ss_pred hcCCcccchhhccccc---cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 444333221 111111 11111 11233333333333222 1 23456678889999999999999999999998743
Q ss_pred ------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc---cccHHHHHHHhhcC-CChhHHHHHHHHHH
Q psy2915 576 ------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLSD-SNPMVVANAVAALS 645 (883)
Q Consensus 576 ------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~---~~~~~~~l~~lL~D-~d~~V~~~a~~~l~ 645 (883)
....+.+++.|...++|++|.||.+|+.|++++....+..+. ...+.+.|...++| .++.|..+|+.++.
T Consensus 378 Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~ 457 (1075)
T KOG2171|consen 378 GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALV 457 (1075)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHH
Confidence 235566888899999999999999999999999764332222 11234556666676 57799999999999
Q ss_pred HHHhcCCCchhhHHhcHHHHHHHHHHc-ccCChhhHHHHHHHHhccCCCCh----HHHHHHHHHHhHhhcCCCh----HH
Q psy2915 646 EMNEASTSGVALIEMNAQTINKLLTAL-NECTEWGQVFILDSLSNYSPKDD----REAQSICERITPRLAHANA----AV 716 (883)
Q Consensus 646 ~i~~~~~~~~~~~~l~~~~~~~L~~~l-~~~~~w~qi~iL~lL~~~~~~~~----~~~~~il~~l~~~l~~~~~----aV 716 (883)
......+. ...-+..+..+.+++..+ ....+-.|..++..++.....-. .-...+++.+.+.+++.+. .+
T Consensus 458 nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 458 NFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred HHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHH
Confidence 88765442 234455666777455444 45678888888888876542111 1122567777777887762 55
Q ss_pred HHHHHHHHHHhhhhCCC
Q psy2915 717 VLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 717 ~~eai~~i~~~~~~~~~ 733 (883)
+..+..|+.-++..+++
T Consensus 537 rgktmEcisli~~AVGk 553 (1075)
T KOG2171|consen 537 RGKTMECLSLIARAVGK 553 (1075)
T ss_pred HhhHHHHHHHHHHHhhh
Confidence 55555555555544554
No 28
>KOG2171|consensus
Probab=99.59 E-value=2.1e-10 Score=135.34 Aligned_cols=696 Identities=16% Similarity=0.161 Sum_probs=366.3
Q ss_pred cchhhhchhcCCCCHHHHHHHHHHhccCCc------hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCc---ccc
Q psy2915 116 SSVGVFVKDCEDSNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA---QLV 186 (883)
Q Consensus 116 ~~~~~l~kDL~~~n~~vr~lALr~L~~i~~------~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p---~~~ 186 (883)
..+..+....+|+||..|..|++.+.++.. ....+.+.+.+.++++|++..||-.|+.|++.+....+ +.+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 344557778999999999999999998632 22445677788899999877799999999999887653 222
Q ss_pred cc-----ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcccc-ccccccCCCCcHHHHHhh-ccccccCCCCCCCch
Q psy2915 187 ED-----QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRN-LSSRKKQICWNLPYLMNL-SVIYPAWPLSTINPH 259 (883)
Q Consensus 187 ~~-----~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~-l~~~~~~~~w~q~~~l~l-~~~~~~~~l~~~n~~ 259 (883)
+. |..+..+.+.+.+.|..+...++.+|.|+....|.... .+. .++.+ .....+ ++-+.+
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~----------~ii~~~l~Ia~n---~~l~~~ 264 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS----------QIIQFSLEIAKN---KELENS 264 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH----------HHHHHHHHHhhc---ccccHH
Confidence 10 22334445555688999999999999999988765431 110 01110 011110 122223
Q ss_pred H--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc---CC--------------hhHHHHHHHHHHHHHhhCc-hh
Q psy2915 260 T--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS---SE--------------PEVQYVALRNINLIVQKRP-DI 319 (883)
Q Consensus 260 v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~---~~--------------~~vr~~aL~~l~~l~~~~~-~~ 319 (883)
+ .++.++..+.+.-+......+.+...++..++.++. .+ ......|.+++-+++..-| +.
T Consensus 265 ~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~ 344 (1075)
T KOG2171|consen 265 IRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ 344 (1075)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh
Confidence 3 444444444433221112222244444444444431 01 1144567888888877654 22
Q ss_pred -HHhccccee-eccCCCHHHHHHHHHHHHHhcC------hhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhH
Q psy2915 320 -LKHEMKVFF-VKYNDPIYVKLEKLDIMIRLAS------QANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA 391 (883)
Q Consensus 320 -~~~~~~~~~-~l~~~~~~Ir~~aL~iL~~l~~------~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~ 391 (883)
+.+-+..+. .+.+.+.+-|+.+|-.|..++. ..|.+.|++-..+++.|+++.||-.++.+||+++..++|..
T Consensus 345 v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 222222222 3788899999999999998875 36778888888899999999999999999999999888743
Q ss_pred -----HHHHHHHHHHHHhH---------------------hhhhhCCHHHHHH-HHhhhhcCCCHHHHHHHHHHHHHHhh
Q psy2915 392 -----ERCVSTLLDLIQTK---------------------YAERIDNADELLE-SFLEGFHDENTQVQLQLLTAIVKLFL 444 (883)
Q Consensus 392 -----~~~v~~Ll~lL~~~---------------------~~~~i~~~~~il~-~l~~~~~~~~~~vr~~~L~al~Kl~~ 444 (883)
+...+.|+..+.+. +....+-.+.+++ .+........+.+|.+.++|++-...
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 33444555555443 1111122333444 23333466789999999999997765
Q ss_pred cCCchHHHHHHH----HHHHhhcCC--CChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCC--Cc------ccc
Q psy2915 445 KRPTDTQELVQQ----VLSLATQDS--DNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGK--DV------SAL 510 (883)
Q Consensus 445 ~~~~~~~~~l~~----ll~~~~~d~--~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~--~~------~~~ 510 (883)
.-.....+.... +.....+-. +..++|-+..+-..+++..-....+.+....++.....|. +. .++
T Consensus 505 AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 505 AAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred HHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 433322222222 222222221 2334444434444444443222233333333333222211 00 000
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHh----------------------------hcCCC-C--
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVK----------------------------DCEDS-N-- 559 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~k----------------------------dl~~~-n-- 559 (883)
+. ...-|+|+.+...+..- ...+...+.+ .+.+. +
T Consensus 585 ~~----------~~warmc~ilg~~F~p~----L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~ 650 (1075)
T KOG2171|consen 585 MI----------AFWARMCRILGDDFAPF----LPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIG 650 (1075)
T ss_pred HH----------HHHHHHHHHhchhhHhH----HHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeee
Confidence 00 01122222222222100 0111111111 01111 1
Q ss_pred -----HHHHHHHHHHhc---CCChhhhhHHHHHHHH----hhcCCCChHHHhhHHHHHHHHHh-------hccccccc--
Q psy2915 560 -----PLIRALAVRTMG---CIRVDKITEYLCEPLR----KCLKDEDPYVRKTAAVCVAKLYD-------INAQLVED-- 618 (883)
Q Consensus 560 -----~~vr~~AL~~L~---~i~~~~~~~~l~~~l~----~~l~d~~~~VRk~A~~al~~l~~-------~~~~~~~~-- 618 (883)
-.-.+.|..+|+ ......+.+++.+.+. .+..+.+.-||++|+.++..+.+ .+|..+..
T Consensus 651 I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~ 730 (1075)
T KOG2171|consen 651 IRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLW 730 (1075)
T ss_pred eeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 122344444444 4444555555444433 34457888999999999887665 24443321
Q ss_pred ccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCC----
Q psy2915 619 QGFLDQLKDLLS-DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPK---- 693 (883)
Q Consensus 619 ~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~---- 693 (883)
..+.+.+...+. ..++.|....++.+.+..+.-. ...+.+.....+...+ ..+++..+...
T Consensus 731 ~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G----~~~L~~~~~~~~~~~~----------~~~~l~~~~~~~~r~ 796 (1075)
T KOG2171|consen 731 EAIRPALIKALEEEPETEVLSEILESFAECIEVMG----DNCLNEDGLEALLGGL----------LAQLLQHFKRMQDRQ 796 (1075)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcC----cccCCcHHHHHHHHHH----------HHHHHHHHHHHHhhh
Confidence 112333333333 6788888888888888875321 1122222222222211 11222222111
Q ss_pred ChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHh
Q psy2915 694 DDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 694 ~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~ 772 (883)
+.+.-.+....-...+......+.-+...++..+....++ ++.+ .+..+.+.++.++. +.++-|-.|+..+..+++
T Consensus 797 ~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~--~f~p-~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie 873 (1075)
T KOG2171|consen 797 EEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKG--SFLP-FFENFLPLIVKLLKSKKTVARQWAVCIFDDLIE 873 (1075)
T ss_pred hhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccc--cccH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 0000001111111111123334444444444444332333 2222 23345555566665 677779999999888877
Q ss_pred hC----chhHhhccceeE-EccCCCHHHHHHHHHHHHHhccccchhh-----------------------hhHHHHH-HH
Q psy2915 773 KR----PDILKHEMKVFF-VKYNDPIYVKLEKLDIMIRLASQANIAQ-----------------------VNYVVQE-AI 823 (883)
Q Consensus 773 ~~----~~~~~~~~~~~~-~l~~dd~~Ir~~~l~lL~~l~~~~N~~~-----------------------~~~~~~e-~i 823 (883)
-- +..+......+. ++.+.+|.||..|..-+.-+|...+=.- ..-...| ++
T Consensus 874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~ 953 (1075)
T KOG2171|consen 874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAI 953 (1075)
T ss_pred hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHH
Confidence 43 334444445444 4555599999999887777775544321 1112233 44
Q ss_pred HHHHHHHhhCCCc--hHHHHHHHHhhcccCCcHH
Q psy2915 824 VVIKDIFRKYPNK--YETIISTLCENLDTLDEPE 855 (883)
Q Consensus 824 ~~i~~l~~~~p~~--~~~~i~~L~~~l~~i~~~~ 855 (883)
..|+.++..+|.. ...+++.++..+...++-+
T Consensus 954 gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~e 987 (1075)
T KOG2171|consen 954 GAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKE 987 (1075)
T ss_pred HHHHHHHHhCCccCcHHHHHHHHHHhCCCccchh
Confidence 5888888888663 4566666666655444333
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.56 E-value=5.1e-13 Score=165.26 Aligned_cols=286 Identities=24% Similarity=0.207 Sum_probs=178.8
Q ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHH
Q psy2915 131 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 210 (883)
Q Consensus 131 ~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a 210 (883)
..|-.|+..| ..+ ..+.+.+.|.|++|.||+.|+.++.++. ++..++.|.++|+|+|+.|+..|
T Consensus 609 ~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~A 672 (897)
T PRK13800 609 SPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAA 672 (897)
T ss_pred hHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHH
Confidence 4445666665 222 2234556678999999999999988764 23456788888899999999988
Q ss_pred HHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHH
Q psy2915 211 VAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPP 290 (883)
Q Consensus 211 ~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 290 (883)
+.+|.++.+..+. .+.
T Consensus 673 a~aL~~l~~~~~~----------------------------------------------------------------~~~ 688 (897)
T PRK13800 673 AEGLRELVEVLPP----------------------------------------------------------------APA 688 (897)
T ss_pred HHHHHHHHhccCc----------------------------------------------------------------hHH
Confidence 8888776432100 012
Q ss_pred HHHhhc-CChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcC
Q psy2915 291 LVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVD 369 (883)
Q Consensus 291 L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d 369 (883)
|...|. +++.||..|++.|..+.. .+ . ..|...+.+.|
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~------------------------------------~~-~----~~l~~~L~D~d 727 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRA------------------------------------GD-A----ALFAAALGDPD 727 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhcc------------------------------------CC-H----HHHHHHhcCCC
Confidence 222232 345666666666554321 11 1 12334556777
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCch
Q psy2915 370 VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTD 449 (883)
Q Consensus 370 ~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~ 449 (883)
+.+|.+++++++.+.. + .. +...+.+++..||.....+++.+....+
T Consensus 728 ~~VR~~Av~aL~~~~~---~------~~----------------------l~~~l~D~~~~VR~~aa~aL~~~~~~~~-- 774 (897)
T PRK13800 728 HRVRIEAVRALVSVDD---V------ES----------------------VAGAATDENREVRIAVAKGLATLGAGGA-- 774 (897)
T ss_pred HHHHHHHHHHHhcccC---c------HH----------------------HHHHhcCCCHHHHHHHHHHHHHhccccc--
Confidence 7888888888775421 0 00 1223456778888888888887633222
Q ss_pred HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHH
Q psy2915 450 TQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLV 529 (883)
Q Consensus 450 ~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~ 529 (883)
..+..+... ..| .|++||..|...+.-
T Consensus 775 --~~~~~L~~l-l~D-~d~~VR~aA~~aLg~------------------------------------------------- 801 (897)
T PRK13800 775 --PAGDAVRAL-TGD-PDPLVRAAALAALAE------------------------------------------------- 801 (897)
T ss_pred --hhHHHHHHH-hcC-CCHHHHHHHHHHHHh-------------------------------------------------
Confidence 112333332 233 257777655522222
Q ss_pred HHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHH
Q psy2915 530 YLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY 609 (883)
Q Consensus 530 yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~ 609 (883)
++... . +...+..-++|+++.||..|+++|+.++.++..+ .+..++.|+++.||+.|+.+|+++
T Consensus 802 ------~g~~~-~----~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~----~L~~~L~D~~~~VR~~A~~aL~~~- 865 (897)
T PRK13800 802 ------LGCPP-D----DVAAATAALRASAWQVRQGAARALAGAAADVAVP----ALVEALTDPHLDVRKAAVLALTRW- 865 (897)
T ss_pred ------cCCcc-h----hHHHHHHHhcCCChHHHHHHHHHHHhccccchHH----HHHHHhcCCCHHHHHHHHHHHhcc-
Confidence 11110 0 1123445567889999999999999998766554 567778999999999999999885
Q ss_pred hhcccccccccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy2915 610 DINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALS 645 (883)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~ 645 (883)
... +...+.|..+++|.|+.||..|..+|.
T Consensus 866 ~~~------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 PGD------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCC------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 111 234588889999999999999998875
No 30
>KOG2023|consensus
Probab=99.48 E-value=2.9e-10 Score=125.70 Aligned_cols=686 Identities=17% Similarity=0.151 Sum_probs=377.3
Q ss_pred CcHHHHHHHhc---CCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcc
Q psy2915 13 GEIFELKGELN---SDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFS 89 (883)
Q Consensus 13 ~~~~~~~~~l~---~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n 89 (883)
.++.++-+.|+ |++..-++.+..|+.-... --|...+..-|.--+.+.+...|.+.-+.+.+-.+- -+
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~--------~~ 80 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRG--------HY 80 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccchhceeeEEEecccccchhHHHHhhhhHhccccc--------cc
Confidence 35666666665 5677777777777665433 112222222233334566667788877777764221 11
Q ss_pred cccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHH---HHHHhccCCchhhhHHHHHHHHhhcCCCChh
Q psy2915 90 TFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRAL---AVRTMGCIRVDKITEYLCEPLRKCLKDEDPY 166 (883)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~l---ALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~ 166 (883)
..+-+....|+... ..+.+-|++|.+|+- -++++.+.+.-..-+.+.|.+-.++..++-.
T Consensus 81 ----~~~~~~~~~yiKs~-------------~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n 143 (885)
T KOG2023|consen 81 ----NSIPSEVLDYIKSE-------------CLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYN 143 (885)
T ss_pred ----cCCChHHHHHHHHH-------------HHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCccc
Confidence 12333445555554 888899999999964 4677777666666788888888889888888
Q ss_pred HHHHHHHHHHHHhhhCcccccc-------ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHH
Q psy2915 167 VRKTAAVCVAKLYDINAQLVED-------QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLP 239 (883)
Q Consensus 167 VRk~A~~al~kl~~~~p~~~~~-------~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~ 239 (883)
.---|.-|+.|++.-.++.++. .-++|++.++...++|-.|..|+..+....-..+...
T Consensus 144 ~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal-------------- 209 (885)
T KOG2023|consen 144 TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL-------------- 209 (885)
T ss_pred ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH--------------
Confidence 8899999999999876666542 1134555566667888888888877766543221110
Q ss_pred HHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCch
Q psy2915 240 YLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD 318 (883)
Q Consensus 240 ~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~ 318 (883)
.. .+......+..+-+ .+|+||--+-+++..+....|+
T Consensus 210 --------------------~~---------------------~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 210 --------------------YV---------------------HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred --------------------HH---------------------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 00 11122222333223 4679999999999999999999
Q ss_pred hHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy2915 319 ILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTL 398 (883)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~L 398 (883)
-+.+|+. .|++-+.+-.++.|+++.-+|..---.+|+.- . |-+.+
T Consensus 249 kl~phl~------------------------------~IveyML~~tqd~dE~VALEACEFwla~aeqp--i---~~~~L 293 (885)
T KOG2023|consen 249 KLVPHLD------------------------------NIVEYMLQRTQDVDENVALEACEFWLALAEQP--I---CKEVL 293 (885)
T ss_pred hcccchH------------------------------HHHHHHHHHccCcchhHHHHHHHHHHHHhcCc--C---cHHHH
Confidence 9988853 34666666778888888888888777777531 1 11222
Q ss_pred HHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHH
Q psy2915 399 LDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYW 478 (883)
Q Consensus 399 l~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~ 478 (883)
...+.. ++..+.+++...+... .++. ++.+|..+-||--...
T Consensus 294 ~p~l~k-----------liPvLl~~M~Ysd~D~------------------------~LL~---~~eeD~~vpDreeDIk 335 (885)
T KOG2023|consen 294 QPYLDK-----------LIPVLLSGMVYSDDDI------------------------ILLK---NNEEDESVPDREEDIK 335 (885)
T ss_pred HHHHHH-----------HHHHHHccCccccccH------------------------HHhc---CccccccCCchhhhcc
Confidence 222211 2222333221111000 0000 0111222333322111
Q ss_pred HhhcCCchhhhhhhhhHHHHHhhccCCC-cccchHHHHHhhcccchhHHHHHHHHHHhhccC-CchhhHhHHHHHHhhcC
Q psy2915 479 RLLSTGNTFYILLHLTRLVIASMTVGKD-VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKS-HPDMAIMAVNTFVKDCE 556 (883)
Q Consensus 479 ~ll~~~~~~~~~~~~l~kli~~~~~g~~-~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~-~~~~~~l~~n~l~kdl~ 556 (883)
+-+..+.+....-+. ..+| -...+. .--+-++|.+|+-..-++..+.+- .++++..+.+.+++-|.
T Consensus 336 PRfhksk~~~~~~~~---------~~eDdddDe~D---DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 336 PRFHKSKEHGNGEDA---------DDEDDDDDEDD---DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred chhhhchhccCcccc---------ccccccccccc---cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 111111110000000 0000 000000 001123577777666666666544 35666778888999999
Q ss_pred CCCHHHHHHHHHHhcCCCh---hh---hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc
Q psy2915 557 DSNPLIRALAVRTMGCIRV---DK---ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS 630 (883)
Q Consensus 557 ~~n~~vr~~AL~~L~~i~~---~~---~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~ 630 (883)
+++..+|-+++-++|.|.. .. ..+.++|.+.++|.|+.|.||+-.+-++.|..+.--+.-.+.-|.+.+..++.
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 9999999998888887633 22 23457889999999999999999999999887743222233345666666554
Q ss_pred ---CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHH----HHHHHhccC------CCChHH
Q psy2915 631 ---DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVF----ILDSLSNYS------PKDDRE 697 (883)
Q Consensus 631 ---D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~----iL~lL~~~~------~~~~~~ 697 (883)
|++-.|+.+|+.++..+-.+ ..-+++| .+..+++.+.-.=.--|-+ +...+++++ -+.+.-
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~-----A~~eLVp-~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Y 557 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEE-----AGEELVP-YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAY 557 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHh-----ccchhHH-HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHH
Confidence 99999999999999888653 1223333 3444444321000000111 112222221 122333
Q ss_pred HHHHHHHHhHh---hcCCCh--HHHHHHHHHHHHhh--hhCCCChhhHHHHHHHhhhHHHHhccC---------CcchHH
Q psy2915 698 AQSICERITPR---LAHANA--AVVLSAVKVLMKLM--EMLPGEGDFVSTLTKKLAPPLVTLLSS---------EPEVQY 761 (883)
Q Consensus 698 ~~~il~~l~~~---l~~~~~--aV~~eai~~i~~~~--~~~~~~~~l~~~~~~~~~~~L~~ll~~---------~~niry 761 (883)
.+.+++++... +.+... -=++||...+..-. ..+|-.+...+.+++-+-..+..+... +.+.-.
T Consensus 558 iqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI 637 (885)
T KOG2023|consen 558 IQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFII 637 (885)
T ss_pred HHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEE
Confidence 44455555432 333322 55677777665432 111222222333333333222222221 123344
Q ss_pred HHHHHHHHHHhhCc----hhHh-hcc-ce-eEEccCCCHHHHHHHHHHHHHhccc-----------------cchhh-hh
Q psy2915 762 VALRNINLIVQKRP----DILK-HEM-KV-FFVKYNDPIYVKLEKLDIMIRLASQ-----------------ANIAQ-VN 816 (883)
Q Consensus 762 ~aL~~l~~l~~~~~----~~~~-~~~-~~-~~~l~~dd~~Ir~~~l~lL~~l~~~-----------------~N~~~-~~ 816 (883)
++|+.+.-|++-.+ .++. ..+ +. +.|..+.-+.+|.-+.-+|..++-. .|... .-
T Consensus 638 ~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~i 717 (885)
T KOG2023|consen 638 VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENI 717 (885)
T ss_pred EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhc
Confidence 66788877776442 2333 234 43 4588888889999999998888765 22221 11
Q ss_pred HHHHHHHHHHHHHHhhCCCchHHHHHHHHhhcc-----cCCcHHHHHHHHHHHhcCcCc
Q psy2915 817 YVVQEAIVVIKDIFRKYPNKYETIISTLCENLD-----TLDEPEARASMIWIIGEYAER 870 (883)
Q Consensus 817 ~~~~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~-----~i~~~~~~~~~~w~lgey~~~ 870 (883)
.+.+.++-++.+++.|.-..-...++.+++.+- ..+........+-.||--+-.
T Consensus 718 sv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~ 776 (885)
T KOG2023|consen 718 SVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYI 776 (885)
T ss_pred hHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc
Confidence 344555567888887775443333333333322 122333444445556655443
No 31
>PRK09687 putative lyase; Provisional
Probab=99.45 E-value=1.1e-11 Score=131.89 Aligned_cols=251 Identities=16% Similarity=0.147 Sum_probs=185.1
Q ss_pred HHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhh-hHHHHHHHHhh-
Q psy2915 512 PDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKI-TEYLCEPLRKC- 589 (883)
Q Consensus 512 ~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~-~~~l~~~l~~~- 589 (883)
.++++.+.+++..+|..+..++..++... +...+.+.++|+|+.+|..|+.+||.++.+.- .+...+.+..+
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~~------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQD------VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcch------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 44567888999999988888888776432 34556667889999999999999999987542 23455566655
Q ss_pred cCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHH
Q psy2915 590 LKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLL 669 (883)
Q Consensus 590 l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~ 669 (883)
++|++|.||..|+.+++.+....+.. .+..++.+...+.|+++.||.+|+.+|+++... ..+..|+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~~~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~------------~ai~~L~ 165 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKKNPLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE------------AAIPLLI 165 (280)
T ss_pred hcCCCHHHHHHHHHHHhccccccccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH------------HHHHHHH
Confidence 68999999999999999885433221 234567777888999999999999999888632 5677888
Q ss_pred HHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHH
Q psy2915 670 TALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPL 749 (883)
Q Consensus 670 ~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L 749 (883)
..+.+.++|.+......|+.+...++ ...+.|...+.+.+..|+.+|+..+..+ +. + .+++.|
T Consensus 166 ~~L~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~-----~----~av~~L 228 (280)
T PRK09687 166 NLLKDPNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLALR----KD-----K----RVLSVL 228 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc----CC-----h----hHHHHH
Confidence 88889999999999999999865554 6678888899999999999999999887 22 2 355666
Q ss_pred HHhccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEc-cCCCHHHHHHHHHHHHH
Q psy2915 750 VTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVK-YNDPIYVKLEKLDIMIR 805 (883)
Q Consensus 750 ~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l-~~dd~~Ir~~~l~lL~~ 805 (883)
+..+.. +++++-+...+..+... ..+ +.+.. .+ .++|..+++++++.+-+
T Consensus 229 i~~L~~-~~~~~~a~~ALg~ig~~--~a~-p~L~~--l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKK-GTVGDLIIEAAGELGDK--TLL-PVLDT--LLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcC-CchHHHHHHHHHhcCCH--hHH-HHHHH--HHhhCCChhHHHHHHHHHhc
Confidence 666664 44777777776666542 221 11211 12 24589999999987643
No 32
>PRK09687 putative lyase; Provisional
Probab=99.42 E-value=2.3e-11 Score=129.41 Aligned_cols=250 Identities=16% Similarity=0.168 Sum_probs=180.6
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHH
Q psy2915 418 ESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLV 497 (883)
Q Consensus 418 ~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kl 497 (883)
+.+.+.+.+++..||..++.+++++- ....+..+..++.++ |+.+|.-|...+.-++.....
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~------~~~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~---------- 87 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG------GQDVFRLAIELCSSK--NPIERDIGADILSQLGMAKRC---------- 87 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC------cchHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCccc----------
Confidence 34555667889999999999998772 233455555554443 799998887666655443210
Q ss_pred HHhhccCCCcccchHHHHHh-hcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChh
Q psy2915 498 IASMTVGKDVSALFPDVVNC-MQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVD 576 (883)
Q Consensus 498 i~~~~~g~~~~~~~~~vi~l-l~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~ 576 (883)
....+..+..+ ..++++.+|+.+.-+++.+....+....-+.+.+..-+.|+++.||..|+.+||.++++
T Consensus 88 ---------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 88 ---------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred ---------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 01123333334 56788889988888888875544322233566777888899999999999999999987
Q ss_pred hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchh
Q psy2915 577 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVA 656 (883)
Q Consensus 577 ~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~ 656 (883)
+..+ .+..++.|++|.||..|+.+|+++....| ...+.|..+|.|+|+.||..|+.+|.++...
T Consensus 159 ~ai~----~L~~~L~d~~~~VR~~A~~aLg~~~~~~~------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~------ 222 (280)
T PRK09687 159 AAIP----LLINLLKDPNGDVRNWAAFALNSNKYDNP------DIREAFVAMLQDKNEEIRIEAIIGLALRKDK------ 222 (280)
T ss_pred HHHH----HHHHHhcCCCHHHHHHHHHHHhcCCCCCH------HHHHHHHHHhcCCChHHHHHHHHHHHccCCh------
Confidence 6554 57777899999999999999998822223 3458899999999999999999999998642
Q ss_pred hHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhc-CCChHHHHHHHHHH
Q psy2915 657 LIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLA-HANAAVVLSAVKVL 724 (883)
Q Consensus 657 ~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~-~~~~aV~~eai~~i 724 (883)
..+..|++.+.+.+ ..+.++..|+.++.. ..++.|..+++ +.+.-|...++.++
T Consensus 223 ------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 223 ------RVLSVLIKELKKGT--VGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 56677888776644 356888888888864 55788888875 66777877776665
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.1e-10 Score=144.66 Aligned_cols=271 Identities=18% Similarity=0.181 Sum_probs=177.8
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHH
Q psy2915 418 ESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLV 497 (883)
Q Consensus 418 ~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kl 497 (883)
..+...+.++++.||..++.+++++.. ...+..+.... .| .+++||..|...+.-+...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL-~D-~d~~VR~~Aa~aL~~l~~~------------- 682 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAAL-GD-GAAAVRRAAAEGLRELVEV------------- 682 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHhc-------------
Confidence 445566778888888888888888631 22334444433 44 3788888776433322110
Q ss_pred HHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh
Q psy2915 498 IASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDK 577 (883)
Q Consensus 498 i~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~ 577 (883)
. ..-..+...+.++++.+|..+..+++......+ ..+.+-+.|+++.||..|+++|+.+..++
T Consensus 683 ---~-------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~Av~aL~~~~~~~ 745 (897)
T PRK13800 683 ---L-------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEAVRALVSVDDVE 745 (897)
T ss_pred ---c-------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHHHHHHhcccCcH
Confidence 0 001234456777788888777777666543322 23456678888889999999888876542
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhh
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVAL 657 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~ 657 (883)
.+..++.|+++.||..|+.+|+.+....+.. .+.|..++.|+|+.||.+|+.+|.++....
T Consensus 746 -------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~------~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~------ 806 (897)
T PRK13800 746 -------SVAGAATDENREVRIAVAKGLATLGAGGAPA------GDAVRALTGDPDPLVRAAALAALAELGCPP------ 806 (897)
T ss_pred -------HHHHHhcCCCHHHHHHHHHHHHHhccccchh------HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc------
Confidence 3556788888999998888888775433322 366778888888889999888888886421
Q ss_pred HHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhh
Q psy2915 658 IEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDF 737 (883)
Q Consensus 658 ~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l 737 (883)
.....+...+.+.++..+...++.|..+.+.+ .++.|.+++++.+..|+.+|+.++..+ +.+
T Consensus 807 -----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~------a~~~L~~~L~D~~~~VR~~A~~aL~~~----~~~--- 868 (897)
T PRK13800 807 -----DDVAAATAALRASAWQVRQGAARALAGAAADV------AVPALVEALTDPHLDVRKAAVLALTRW----PGD--- 868 (897)
T ss_pred -----hhHHHHHHHhcCCChHHHHHHHHHHHhccccc------hHHHHHHHhcCCCHHHHHHHHHHHhcc----CCC---
Confidence 22234566666766557777888888876543 367888888888888998888888776 222
Q ss_pred HHHHHHHhhhHHHHhcc-CCcchHHHHHHHHH
Q psy2915 738 VSTLTKKLAPPLVTLLS-SEPEVQYVALRNIN 768 (883)
Q Consensus 738 ~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~ 768 (883)
++ ..+.|...++ .++++|-.+...|.
T Consensus 869 -~~----a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 869 -PA----ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred -HH----HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 12 2233334444 57778877777664
No 34
>KOG1241|consensus
Probab=99.34 E-value=1.5e-07 Score=106.51 Aligned_cols=522 Identities=16% Similarity=0.201 Sum_probs=279.5
Q ss_pred hchhcCCCCHHHHH-HHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhh--CccccccccHHHHHHH
Q psy2915 121 FVKDCEDSNPLIRA-LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI--NAQLVEDQGFLDQLKD 197 (883)
Q Consensus 121 l~kDL~~~n~~vr~-lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~--~p~~~~~~~~~~~L~~ 197 (883)
|++.|.+.+|.... ..=|-++- .++.-+++-..+++.|..+.|.++..|+.|++.+... ....+ ++++..+..
T Consensus 61 LKN~L~akd~~~k~~~~qRWl~l--~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w--p~li~~lv~ 136 (859)
T KOG1241|consen 61 LKNSLTAKDPERKQQYQQRWLQL--PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW--PELIVTLVS 136 (859)
T ss_pred HhhhhccCCHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhC--HHHHHHHHH
Confidence 77778888886653 34444422 5688888889999999999999999999999998652 22233 234455555
Q ss_pred HhcCCChh-HHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchH--HHHHHHHHHhhcCC
Q psy2915 198 LLSDSNPM-VVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHT--PLLKVLMKLMEMLP 274 (883)
Q Consensus 198 lL~D~d~~-V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v--~~~~~l~~l~~~~~ 274 (883)
-..+..+. +..+++.+++.+|++- .|.+ .-.+.
T Consensus 137 nv~~~~~~~~k~~slealGyice~i-----------------------------------~pevl~~~sN~--------- 172 (859)
T KOG1241|consen 137 NVGEEQASMVKESSLEALGYICEDI-----------------------------------DPEVLEQQSND--------- 172 (859)
T ss_pred hcccccchHHHHHHHHHHHHHHccC-----------------------------------CHHHHHHHHhH---------
Confidence 44455555 8999999999999742 2222 00000
Q ss_pred CChhhHHHHHHHHhHHHHHhhc--CChhHHHHHHHHHHHHHhhCchhHHhcc--cce---ee--ccCCCHHHHHHHHHHH
Q psy2915 275 GEGDFVSTLTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDILKHEM--KVF---FV--KYNDPIYVKLEKLDIM 345 (883)
Q Consensus 275 ~~~~~~~~~~~~~~~~L~~lL~--~~~~vr~~aL~~l~~l~~~~~~~~~~~~--~~~---~~--l~~~~~~Ir~~aL~iL 345 (883)
.+......... .+.++|.+|+.+|..=.......|..+. ..+ .| =..+|..|+..|+.-|
T Consensus 173 -----------iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl 241 (859)
T KOG1241|consen 173 -----------ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL 241 (859)
T ss_pred -----------HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence 01111112222 3458999999999776554444443321 111 12 2456666666666666
Q ss_pred HHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhc
Q psy2915 346 IRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFH 425 (883)
Q Consensus 346 ~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~ 425 (883)
.++.. --.+|.. ..-.+++.+|..-+.+.+ ..+..+..+ ++ ++.+.++--++.....+...
T Consensus 242 vkIm~---------LyY~~m~----~yM~~alfaitl~amks~-~deValQai-EF----WsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 242 VKIMS---------LYYEFME----PYMEQALFAITLAAMKSD-NDEVALQAI-EF----WSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred HHHHH---------HHHHHHH----HHHHHHHHHHHHHHHcCC-cHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHhh
Confidence 65432 1111110 012233333333232211 111111100 00 01111111111111111111
Q ss_pred -CCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccC
Q psy2915 426 -DENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVG 504 (883)
Q Consensus 426 -~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g 504 (883)
..++..+ .|.+ +..+.+++.+++....+..|+|--| |..- .-.+.+-.++.-.-|
T Consensus 303 ~~~~p~~~---------~fa~--~a~~~v~P~Ll~~L~kqde~~d~Dd-----Wnp~--------kAAg~CL~l~A~~~~ 358 (859)
T KOG1241|consen 303 QGLPPSSK---------YFAR--QALQDVVPVLLELLTKQDEDDDDDD-----WNPA--------KAAGVCLMLFAQCVG 358 (859)
T ss_pred cCCCchhh---------HHHH--HHHhHhhHHHHHHHHhCCCCccccc-----CcHH--------HHHHHHHHHHHHHhc
Confidence 1111111 1111 1244556666666554212222111 1110 001222233333345
Q ss_pred CCcccchHHHHH-hhcccchhHHHHHHHHHHhhccCC-ch----hhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC-----
Q psy2915 505 KDVSALFPDVVN-CMQTDNLELKKLVYLYLMNYAKSH-PD----MAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----- 573 (883)
Q Consensus 505 ~~~~~~~~~vi~-ll~s~~~~~kr~~yl~~~~~~~~~-~~----~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----- 573 (883)
.++-+...+-++ -++++||..|-.+-++.+...+.- ++ +..-+.+++.+.+.|++-.+|..|..++|.+
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 555544444444 789999999999888887775442 21 3344678888999999999999999999976
Q ss_pred ---ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc--------ccHHHHHHHhhc-----C-CChhH
Q psy2915 574 ---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--------QGFLDQLKDLLS-----D-SNPMV 636 (883)
Q Consensus 574 ---~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--------~~~~~~l~~lL~-----D-~d~~V 636 (883)
...+..+.+++.+.+.++| .|+|-.+++-++..+....++.... +-|-..+..|+. | ++...
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNL 517 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNL 517 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhH
Confidence 3355666677777777877 5899888888888887655444332 234455556664 4 56789
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccC--------C-----hhhHHHHHHHH----hccCCCChHHHH
Q psy2915 637 VANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC--------T-----EWGQVFILDSL----SNYSPKDDREAQ 699 (883)
Q Consensus 637 ~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~--------~-----~w~qi~iL~lL----~~~~~~~~~~~~ 699 (883)
|.+|..+|.++.+..| +++.+.+.......+..|++. + .-+|-.+...| .+.++.-.+.+.
T Consensus 518 R~AAYeALmElIk~st--~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d 595 (859)
T KOG1241|consen 518 RSAAYEALMELIKNST--DDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD 595 (859)
T ss_pred HHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Confidence 9999999999999865 444444444444444433221 1 11222232222 234454455566
Q ss_pred HHHHHHhHhhcCCCh-HHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHH
Q psy2915 700 SICERITPRLAHANA-AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLV 750 (883)
Q Consensus 700 ~il~~l~~~l~~~~~-aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~ 750 (883)
.++..+...+++..+ .|-=+|.-.+..+.+.+++. +...+....|.|.
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~---F~kym~~f~pyL~ 644 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKG---FAKYMPAFKPYLL 644 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHh---HHHHHHHHHHHHH
Confidence 788888888888433 34334444444444444432 2344444555333
No 35
>KOG1824|consensus
Probab=99.23 E-value=3.9e-07 Score=105.03 Aligned_cols=683 Identities=15% Similarity=0.181 Sum_probs=345.5
Q ss_pred hchhcCCCCHHHHHHHHHHhcc------CC-chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHH
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGC------IR-VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD 193 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~------i~-~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~ 193 (883)
+.+-+++++-.+|=+|..-|.+ +. ..+--..+...+.+.++|.++.|..-|+.|++-+..+-|+.-- +..++
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l-e~~ve 88 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL-ETIVE 88 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH-HHHHH
Confidence 7788899999999988876654 11 2334456777888899999999999999999988766554321 11223
Q ss_pred HHHH-HhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhc
Q psy2915 194 QLKD-LLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEM 272 (883)
Q Consensus 194 ~L~~-lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~ 272 (883)
.|.. ++.+.+..-=.+++.+..-+..-.|...
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~----------------------------------------------- 121 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS----------------------------------------------- 121 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccc-----------------------------------------------
Confidence 3322 3444444444444444444443332111
Q ss_pred CCCChhhHHHHHHHHhHHHHHhhcC---ChhHHHHHHHHHHHHHhhCchhHHh-cccceee----ccCCCHHHHHHHHHH
Q psy2915 273 LPGEGDFVSTLTKKLAPPLVTLLSS---EPEVQYVALRNINLIVQKRPDILKH-EMKVFFV----KYNDPIYVKLEKLDI 344 (883)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~~---~~~vr~~aL~~l~~l~~~~~~~~~~-~~~~~~~----l~~~~~~Ir~~aL~i 344 (883)
+.+.+++..++.+.+..-++. ...++..+++.+..+..+.++++.+ |..++.| +...-..||++|.-.
T Consensus 122 ----~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~ 197 (1233)
T KOG1824|consen 122 ----SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITA 197 (1233)
T ss_pred ----cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 011122334444444444432 2246666666666666666555433 2222222 334445566666666
Q ss_pred HHHhcCh---hhHHHHHHHH------------------------------------------HHhh---hhcCHHHHHHH
Q psy2915 345 MIRLASQ---ANIAQVLSEL------------------------------------------KEYA---TEVDVDFVRKA 376 (883)
Q Consensus 345 L~~l~~~---~nv~~Il~eL------------------------------------------~~~~---~~~d~~~r~~a 376 (883)
|+.++.. .-..+++++| .+|. ++.|+++|..+
T Consensus 198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 6555432 2223344444 4443 33444455555
Q ss_pred HHHHHHHHhhchhhH----HHHHHHHHHHHHhH----hhhhhCCHHHHHHHH-----hhhhcC---CCHHHHHHHHHHHH
Q psy2915 377 VRAIGRCAIKVEQSA----ERCVSTLLDLIQTK----YAERIDNADELLESF-----LEGFHD---ENTQVQLQLLTAIV 440 (883)
Q Consensus 377 i~aI~~la~k~~~~~----~~~v~~Ll~lL~~~----~~~~i~~~~~il~~l-----~~~~~~---~~~~vr~~~L~al~ 440 (883)
+++++..-.+-|... +.+++.+++.++.. |...-++....++.- .+.|.| -+|.||+++..++.
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~ 357 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLE 357 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHH
Confidence 555444444433222 22333333333221 111100000111100 122322 27899999999888
Q ss_pred HHhhcCCchHHH----HHHHHHHHhhcCCCChhhhhhhH-HHHHhhcCCchhh---hhhhhhHHHHHhhccCCC--c---
Q psy2915 441 KLFLKRPTDTQE----LVQQVLSLATQDSDNPDLRDRGF-IYWRLLSTGNTFY---ILLHLTRLVIASMTVGKD--V--- 507 (883)
Q Consensus 441 Kl~~~~~~~~~~----~l~~ll~~~~~d~~~~evrdrA~-~y~~ll~~~~~~~---~~~~~l~kli~~~~~g~~--~--- 507 (883)
-+...+.+.... +-+.++....+. ..-|+.-.. -|..++..-+-.. .-.+.+.+ .|-. .
T Consensus 358 a~IsSR~E~L~~~~q~l~p~lI~RfkER--EEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~------~g~~s~~~~L 429 (1233)
T KOG1824|consen 358 AVISSRLEMLPDFYQTLGPALISRFKER--EENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ------GGTPSDLSML 429 (1233)
T ss_pred HHHhccHHHHHHHHHHhCHHHHHHHHHH--hhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc------cCCccchHHH
Confidence 776655432111 112223333322 233333332 3445543321100 00011222 1111 0
Q ss_pred ccchHHHH----HhhcccchhHHHHHHHHHHhhccCCchh----hHhHHHHHHhhcCCCC--HHHHHHHHHHhcCC---C
Q psy2915 508 SALFPDVV----NCMQTDNLELKKLVYLYLMNYAKSHPDM----AIMAVNTFVKDCEDSN--PLIRALAVRTMGCI---R 574 (883)
Q Consensus 508 ~~~~~~vi----~ll~s~~~~~kr~~yl~~~~~~~~~~~~----~~l~~n~l~kdl~~~n--~~vr~~AL~~L~~i---~ 574 (883)
+.-...++ +.+.+++...+.-+++.+..+...-|+. ..-.++.+..-++|.+ ...+..||-.+-+. +
T Consensus 430 ~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~ 509 (1233)
T KOG1824|consen 430 SDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH 509 (1233)
T ss_pred HhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC
Confidence 11111122 3455555555555777777765444432 2234566666676654 56777887766643 3
Q ss_pred hhh----hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh----cc-cccccccHHHHHH----Hhh--cCCChhHHHH
Q psy2915 575 VDK----ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI----NA-QLVEDQGFLDQLK----DLL--SDSNPMVVAN 639 (883)
Q Consensus 575 ~~~----~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~----~~-~~~~~~~~~~~l~----~lL--~D~d~~V~~~ 639 (883)
.|+ +.+.+.|.+..+..|+=+-|-..|...+.++.+. .| ..+.-..++..+. +.| .|.|..|+..
T Consensus 510 ~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVker 589 (1233)
T KOG1824|consen 510 PPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKER 589 (1233)
T ss_pred ChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHH
Confidence 333 4445667888888898888888888888888873 22 1121122333322 233 3999999999
Q ss_pred HHHHHHHHHhcCCCchhh-HHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC--CCC---hHHHHHHHHHHhHhhcCCC
Q psy2915 640 AVAALSEMNEASTSGVAL-IEMNAQTINKLLTALNECTEWGQVFILDSLSNYS--PKD---DREAQSICERITPRLAHAN 713 (883)
Q Consensus 640 a~~~l~~i~~~~~~~~~~-~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~--~~~---~~~~~~il~~l~~~l~~~~ 713 (883)
|+.+++.+...- .++ -...|..+..+++++. ++-.+....|.+..+. |-+ .....++++.+...++..+
T Consensus 590 aIscmgq~i~~f---gD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 590 AISCMGQIIANF---GDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred HHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH
Confidence 999999987542 121 1244566666777664 3444444555555543 111 2334577888888888888
Q ss_pred hHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhcc----c-eeEE
Q psy2915 714 AAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEM----K-VFFV 787 (883)
Q Consensus 714 ~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~----~-~~~~ 787 (883)
.+.+.++..++-.+..+.+.. +-....+.+..-+..|++ ++-.+--.++..+..+....|..+..+. + ++..
T Consensus 665 r~lr~~~l~a~~~L~~~~~~~--~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~l 742 (1233)
T KOG1824|consen 665 RALRLATLTALDKLVKNYSDS--IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRL 742 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHH
Confidence 888888888877775444322 111222222222223444 4444555666777777777776554321 1 1111
Q ss_pred ccCCCHHHHHHHH----HHHHHhccccchhh-----------------hh----HHHHHHHHHHHHHHhhCCCchHHHHH
Q psy2915 788 KYNDPIYVKLEKL----DIMIRLASQANIAQ-----------------VN----YVVQEAIVVIKDIFRKYPNKYETIIS 842 (883)
Q Consensus 788 l~~dd~~Ir~~~l----~lL~~l~~~~N~~~-----------------~~----~~~~e~i~~i~~l~~~~p~~~~~~i~ 842 (883)
+.+ +.|.--++ .....++-..+-.. .+ ..--.+..-++.|+..+|++-..+.+
T Consensus 743 l~S--pllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~ 820 (1233)
T KOG1824|consen 743 LRS--PLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLAT 820 (1233)
T ss_pred hhC--ccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 222 22222222 22222222211111 00 01111333556777888887777777
Q ss_pred HHHhhcccCC-cHHHHHHHHHHHhcCcCccC
Q psy2915 843 TLCENLDTLD-EPEARASMIWIIGEYAERID 872 (883)
Q Consensus 843 ~L~~~l~~i~-~~~~~~~~~w~lgey~~~~~ 872 (883)
++..-++.-. +...|--+.-.+||-+.+.+
T Consensus 821 kl~~~~~s~~s~~~ikvfa~LslGElgr~~~ 851 (1233)
T KOG1824|consen 821 KLIQDLQSPKSSDSIKVFALLSLGELGRRKD 851 (1233)
T ss_pred HHHHHHhCCCCchhHHHHHHhhhhhhccCCC
Confidence 7777666443 34455555677888776654
No 36
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.98 E-value=8.8e-06 Score=89.44 Aligned_cols=421 Identities=15% Similarity=0.137 Sum_probs=221.2
Q ss_pred hhHHHHHHHHHHHHHhh-CchhH-Hhccc-----ceeecc-CCCHHHHHHHHHHHHH--------hcChhhHHHHHHHHH
Q psy2915 299 PEVQYVALRNINLIVQK-RPDIL-KHEMK-----VFFVKY-NDPIYVKLEKLDIMIR--------LASQANIAQVLSELK 362 (883)
Q Consensus 299 ~~vr~~aL~~l~~l~~~-~~~~~-~~~~~-----~~~~l~-~~~~~Ir~~aL~iL~~--------l~~~~nv~~Il~eL~ 362 (883)
.+++..+|..++.++.. .|+.+ +.+-. ....+. ..+..+|..+|..|+. ++.+.+..++..-.-
T Consensus 148 ~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvc 227 (858)
T COG5215 148 VSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVC 227 (858)
T ss_pred hHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeee
Confidence 37888888888887775 46333 32211 122333 4556688888888765 445555555555444
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q psy2915 363 EYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKL 442 (883)
Q Consensus 363 ~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl 442 (883)
+-....|.++..++.-++.++...|-+..
T Consensus 228 eatq~~d~e~q~aafgCl~kim~LyY~fm--------------------------------------------------- 256 (858)
T COG5215 228 EATQGNDEELQHAAFGCLNKIMMLYYKFM--------------------------------------------------- 256 (858)
T ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 44455566666666666655543222111
Q ss_pred hhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhh-hhhhHHHHHhhccCC---CcccchHHHHHhh
Q psy2915 443 FLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYIL-LHLTRLVIASMTVGK---DVSALFPDVVNCM 518 (883)
Q Consensus 443 ~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~-~~~l~kli~~~~~g~---~~~~~~~~vi~ll 518 (883)
++.++.++-.+......+ .|.+|.-.|++||..+....-.... ...+..+ .....|. .+....+.+++++
T Consensus 257 ----~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~-p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 257 ----QSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEV-PAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred ----HHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccC-chhhcchHHHHHHHHHHHHHHHH
Confidence 112222333333333333 3666777777777554432211000 0000000 0001111 0112233344444
Q ss_pred cc-------cchhHHHHHHHHHHhhccCCc-hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh-------hhhhHHHH
Q psy2915 519 QT-------DNLELKKLVYLYLMNYAKSHP-DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV-------DKITEYLC 583 (883)
Q Consensus 519 ~s-------~~~~~kr~~yl~~~~~~~~~~-~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~-------~~~~~~l~ 583 (883)
.. ++|.....+.-.+..|....- .+..-+...+...+++++..-|-+|.-++|++-. ..+.+..+
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qal 410 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQAL 410 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhh
Confidence 32 234444444333444433322 2333355566778899999999999999998733 23566677
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccc-c------------------------------------------
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ-G------------------------------------------ 620 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~-~------------------------------------------ 620 (883)
|.|....+|+.-.|+.+++.|++++..+.++.+... +
T Consensus 411 p~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S 490 (858)
T COG5215 411 PGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVES 490 (858)
T ss_pred HHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccc
Confidence 788888889999999999999999887655442210 0
Q ss_pred ----HHH-HHHHhh-----cCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccC---------------
Q psy2915 621 ----FLD-QLKDLL-----SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC--------------- 675 (883)
Q Consensus 621 ----~~~-~l~~lL-----~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~--------------- 675 (883)
|-+ .+..|+ .+++...|.++.++|+.+..-.|+. -.+.+...+....++++++
T Consensus 491 ~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~--V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~ 568 (858)
T COG5215 491 FLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA--VSDILAGFYDYTSKKLDECISVLGQILATEDQLL 568 (858)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 111 111122 2667777888888887776544432 2222223333333333221
Q ss_pred ChhhHHHHHHHHhcc---CCCChH-------------------------------------------HHHHHHHHHhHhh
Q psy2915 676 TEWGQVFILDSLSNY---SPKDDR-------------------------------------------EAQSICERITPRL 709 (883)
Q Consensus 676 ~~w~qi~iL~lL~~~---~~~~~~-------------------------------------------~~~~il~~l~~~l 709 (883)
-+-+|-.++.+|... .+.+-+ -+.++++.+.+-+
T Consensus 569 ~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al 648 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL 648 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 112222222222221 111100 0124555666666
Q ss_pred cCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc---CCcchHHHHHHHHHHHHhhCchhHhhc
Q psy2915 710 AHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS---SEPEVQYVALRNINLIVQKRPDILKHE 781 (883)
Q Consensus 710 ~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~---~~~niry~aL~~l~~l~~~~~~~~~~~ 781 (883)
+-...-|.-.++..+..+++.++.+ + .-..+.+-..|+..++ .+.|+|=+.|+.+.-|+.....-|..+
T Consensus 649 n~~d~~v~~~avglvgdlantl~~d--f-~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~Y 720 (858)
T COG5215 649 NCTDRFVLNSAVGLVGDLANTLGTD--F-NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESY 720 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhh--H-HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHH
Confidence 6666678888888888887766654 2 2222233334445554 367899999999988887654444443
No 37
>KOG0213|consensus
Probab=98.96 E-value=4.6e-05 Score=86.17 Aligned_cols=610 Identities=13% Similarity=0.143 Sum_probs=289.3
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHhhhCccc-cc-cccHHH
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQL-VE-DQGFLD 193 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~-~~~VRk~A~~al~kl~~~~p~~-~~-~~~~~~ 193 (883)
-|.+++-|..+.+|+||--.-|+.+-+.+.--++.+.|.++..-.+. ++--|++.+.+..+|.-+..-. ++ -..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 34568889999999999888888877666555666677766666555 8989999888888876533211 11 023667
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhccccCCccc----c-ccccccCCCCcHHHHHhhccccccCCCCCCCchH-HHHHHHH
Q psy2915 194 QLKDLLSDSNPMVVANAVAAILLLPRKSYWQR----N-LSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHT-PLLKVLM 267 (883)
Q Consensus 194 ~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~----~-l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v-~~~~~l~ 267 (883)
.+...|.|...-|+.-+..++..+++....+. + .+..+ |.-+. +|..... +..+++.
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpL----wkgir-------------~hrgk~laafLkAig 619 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPL----WKGIR-------------QHRGKELAAFLKAIG 619 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHH----HHHHH-------------HccChHHHHHHHHHh
Confidence 78888899999999888877777765432211 0 00000 11111 1222222 3333333
Q ss_pred HHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhC---chhHHhc-cccee-ecc------CCC-
Q psy2915 268 KLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKR---PDILKHE-MKVFF-VKY------NDP- 334 (883)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~---~~~~~~~-~~~~~-~l~------~~~- 334 (883)
-++..+.+ .+....-+.+.-.+.+=.. .+.+.+-++|..+.+.+... |.++... +..|+ +.- |..
T Consensus 620 yliplmd~--eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ 697 (1172)
T KOG0213|consen 620 YLIPLMDA--EYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRN 697 (1172)
T ss_pred hccccccH--HHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccc
Confidence 33222221 2222334444444444333 34589999999999998865 4444332 22222 110 111
Q ss_pred -HHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhh------HHHHHHHHHHHHHhH--
Q psy2915 335 -IYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTK-- 405 (883)
Q Consensus 335 -~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~------~~~~v~~Ll~lL~~~-- 405 (883)
..+-..+.++-.++... .+++....-+.+.++.+|.-.+.++..+..+.+.. -+.+++.++--++..
T Consensus 698 ykqlv~ttv~ia~KvG~~----~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt 773 (1172)
T KOG0213|consen 698 YKQLVDTTVEIAAKVGSD----PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT 773 (1172)
T ss_pred hhhHHHHHHHHHHHhCch----HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc
Confidence 11222344444444444 44544444455668889998888887777655531 123333333222221
Q ss_pred --------hh-------hhh-CCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHh---hcCCch-HHHHHHHHHHHhhcCC
Q psy2915 406 --------YA-------ERI-DNADELLESFLEGFHDENTQVQLQLLTAIVKLF---LKRPTD-TQELVQQVLSLATQDS 465 (883)
Q Consensus 406 --------~~-------~~i-~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~---~~~~~~-~~~~l~~ll~~~~~d~ 465 (883)
++ ... +..+-+...+...+...++.||.+++..++.+. ....++ .-.-+.-++-.....
T Consensus 774 ~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge- 852 (1172)
T KOG0213|consen 774 EDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE- 852 (1172)
T ss_pred chhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-
Confidence 00 000 111223333333444444444444433332221 111000 000001111111111
Q ss_pred CChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhc---cCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCch
Q psy2915 466 DNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMT---VGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD 542 (883)
Q Consensus 466 ~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~---~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~ 542 (883)
.+|||- ..+..+++.+...+- .--++....+.+...+.+....+.--|.-..+..++..||
T Consensus 853 eypEvL----------------gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 853 EYPEVL----------------GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred ccHHHH----------------HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 122221 122234444433331 1123444444455555554444444455555555555544
Q ss_pred h-----hHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc
Q psy2915 543 M-----AIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE 617 (883)
Q Consensus 543 ~-----~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~ 617 (883)
. -.-++=.+...|++-+-.+|++|..++|-|...-=.+.++..+...|+...-.-|-....+++-......
T Consensus 917 ~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---- 992 (1172)
T KOG0213|consen 917 YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---- 992 (1172)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC----
Confidence 1 1123334455566777778888888887652221122333344444443333333333333332222211
Q ss_pred cccHHHHHHHhhcC---CChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhcc----
Q psy2915 618 DQGFLDQLKDLLSD---SNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNY---- 690 (883)
Q Consensus 618 ~~~~~~~l~~lL~D---~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~---- 690 (883)
....|-.+++| ++..|+...+.+++.+.+... +...+.++...--|-..+.+.++--+-....++..+
T Consensus 993 ---pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyig--emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 993 ---PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIG--EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred ---chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH--HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 11333444443 566777777776666553211 112222322222333444455555444444544443
Q ss_pred -CCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHH
Q psy2915 691 -SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINL 769 (883)
Q Consensus 691 -~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~ 769 (883)
+....+..-.+++.+-+.+-..++.|......++-.+...++.. ..++-+.. .|..-..++|-.-....+.
T Consensus 1068 ~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~-----~~~~Y~~Q---GLFHParkVR~~yw~vyn~ 1139 (1172)
T KOG0213|consen 1068 PGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQ-----AMLKYCLQ---GLFHPARKVRKRYWTVYNS 1139 (1172)
T ss_pred CCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchH-----HHHHHHHH---hccCcHHHHHHHHHHHHHh
Confidence 33345555567777777777778876655444444443333331 11221211 3333344566555555544
Q ss_pred HHhhCchhHhhccc
Q psy2915 770 IVQKRPDILKHEMK 783 (883)
Q Consensus 770 l~~~~~~~~~~~~~ 783 (883)
+-.-..+.+.++++
T Consensus 1140 my~~~~dalv~~yp 1153 (1172)
T KOG0213|consen 1140 MYHGSQDALVACYP 1153 (1172)
T ss_pred Hhhcccchhhhccc
Confidence 43333344455544
No 38
>KOG0414|consensus
Probab=98.91 E-value=5e-06 Score=98.80 Aligned_cols=154 Identities=23% Similarity=0.275 Sum_probs=113.6
Q ss_pred HHHHHhh----cccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcC-CCCHHHHHHHHHHhcCC--ChhhhhHHHHH
Q psy2915 512 PDVVNCM----QTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE-DSNPLIRALAVRTMGCI--RVDKITEYLCE 584 (883)
Q Consensus 512 ~~vi~ll----~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~-~~n~~vr~~AL~~L~~i--~~~~~~~~l~~ 584 (883)
+-+++.+ -.+++.+...++++++.+.-.+.+.-.--.+.+..-++ +|+|.+|+.+.-++|.+ .=|.+.+...+
T Consensus 922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~ 1001 (1251)
T KOG0414|consen 922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTE 1001 (1251)
T ss_pred HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhH
Confidence 3345666 34568888999999998866555443334444445454 89999999999999976 34777777788
Q ss_pred HHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHH
Q psy2915 585 PLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQT 664 (883)
Q Consensus 585 ~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~ 664 (883)
.+.+.+.|+++.|||.|++.+..+.-. +.+.....+..+..++.|+++.++.-|=..+.|+..+. .....+.|..
T Consensus 1002 ~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~---n~iynlLPdi 1076 (1251)
T KOG0414|consen 1002 HLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG---NTIYNLLPDI 1076 (1251)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc---cchhhhchHH
Confidence 888999999999999999999877544 33444567788888999999999999999999998652 2455666655
Q ss_pred HHHHHH
Q psy2915 665 INKLLT 670 (883)
Q Consensus 665 ~~~L~~ 670 (883)
+.+|-+
T Consensus 1077 l~~Ls~ 1082 (1251)
T KOG0414|consen 1077 LSRLSN 1082 (1251)
T ss_pred HHhhcc
Confidence 555544
No 39
>KOG1241|consensus
Probab=98.90 E-value=3.8e-05 Score=87.58 Aligned_cols=428 Identities=15% Similarity=0.214 Sum_probs=234.3
Q ss_pred hchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCC-ChhHHHHHHHHHHHH-hhhCccccccccHHHHHHHH
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE-DPYVRKTAAVCVAKL-YDINAQLVEDQGFLDQLKDL 198 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~-~~~VRk~A~~al~kl-~~~~p~~~~~~~~~~~L~~l 198 (883)
+.+ .-|||+.+|-.|=..|-.....++.+++.-...-+.++. ++++|..|.+.+-.- ..++|+.- . ....+-
T Consensus 7 le~-tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k--~---~~~qRW 80 (859)
T KOG1241|consen 7 LEK-TLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERK--Q---QYQQRW 80 (859)
T ss_pred HHH-HcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHH--H---HHHHHH
Confidence 444 677888888888777777666666665554444444443 567777777776653 22333321 1 111121
Q ss_pred hc---CCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhh-cCC
Q psy2915 199 LS---DSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLME-MLP 274 (883)
Q Consensus 199 L~---D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~-~~~ 274 (883)
+. +.-..|...++.+|...-+..| + .+..++..+.. .+|
T Consensus 81 l~l~~e~reqVK~~il~tL~~~ep~~~----------------------------------s---~Aaq~va~IA~~ElP 123 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSPEPRRP----------------------------------S---SAAQCVAAIACIELP 123 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCCCCcc----------------------------------c---hHHHHHHHHHHhhCc
Confidence 11 2233344444443332221111 1 11122221111 122
Q ss_pred CChhhHHHHHHHHhHHHHHhhc-CCh-hHHHHHHHHHHHHHhh-CchhHHhcccceeeccCCCHHHHHHHHHHHHHhcCh
Q psy2915 275 GEGDFVSTLTKKLAPPLVTLLS-SEP-EVQYVALRNINLIVQK-RPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQ 351 (883)
Q Consensus 275 ~~~~~~~~~~~~~~~~L~~lL~-~~~-~vr~~aL~~l~~l~~~-~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~ 351 (883)
.. .-..++..+.+-.. ..+ .+|-.+|.+++-+++. .|+.+..+
T Consensus 124 ~n------~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~---------------------------- 169 (859)
T KOG1241|consen 124 QN------QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ---------------------------- 169 (859)
T ss_pred hh------hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH----------------------------
Confidence 11 11223333444332 222 5777788888777774 23333222
Q ss_pred hhHHHHHHHHHHhh--hhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCH
Q psy2915 352 ANIAQVLSELKEYA--TEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENT 429 (883)
Q Consensus 352 ~nv~~Il~eL~~~~--~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~ 429 (883)
...|+.++.++. .+.+..+|-.+..++...- ++.+..+... .+-.++++...+.-.-++.
T Consensus 170 --sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsL---------------ef~~~nF~~E-~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 170 --SNDILTAIVQGMRKEETSAAVRLAALNALYNSL---------------EFTKANFNNE-MERNYIMQVVCEATQSPDE 231 (859)
T ss_pred --HhHHHHHHHhhccccCCchhHHHHHHHHHHHHH---------------HHHHHhhccH-hhhceeeeeeeecccCCcH
Confidence 223455555554 3455667767666664321 1122111000 0112333433444455678
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHH-HHH---HhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCC
Q psy2915 430 QVQLQLLTAIVKLFLKRPTDTQELVQQ-VLS---LATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGK 505 (883)
Q Consensus 430 ~vr~~~L~al~Kl~~~~~~~~~~~l~~-ll~---~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~ 505 (883)
++|.+++.++.|+-.-+-..++..... ++. .+..+ ++++|--.+.|||..+....- +.....-...-.|.
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~~deValQaiEFWsticeEEi-----D~~~e~~e~~d~~~ 305 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-DNDEVALQAIEFWSTICEEEI-----DLAIEYGEAVDQGL 305 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcCC
Confidence 899999999999765443233333322 222 23333 589999999999985543311 00001111111122
Q ss_pred C----------cccchHHHHHhhcc-------cchhHHHHHHHHHHhhccC-CchhhHhHHHHHHhhcCCCCHHHHHHHH
Q psy2915 506 D----------VSALFPDVVNCMQT-------DNLELKKLVYLYLMNYAKS-HPDMAIMAVNTFVKDCEDSNPLIRALAV 567 (883)
Q Consensus 506 ~----------~~~~~~~vi~ll~s-------~~~~~kr~~yl~~~~~~~~-~~~~~~l~~n~l~kdl~~~n~~vr~~AL 567 (883)
+ ...+.+.+++++.. ++|...+.+-..+..+... .+++.-.+.+.+..-+++||-..|-+|.
T Consensus 306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHH
Confidence 2 11334445555544 3466666655555555433 3556677888899999999999999999
Q ss_pred HHhcCCCh-------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHH-HHHhhc--CCChhHH
Q psy2915 568 RTMGCIRV-------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQ-LKDLLS--DSNPMVV 637 (883)
Q Consensus 568 ~~L~~i~~-------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~-l~~lL~--D~d~~V~ 637 (883)
-++|++-. ..+.+..+|.+..++.|++-.||.+++-+++|++...|+........+. +.-++. ...|.|.
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva 465 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVA 465 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHH
Confidence 99998722 2356667788888999999999999999999999988877654332222 233333 3578888
Q ss_pred HHHHHHHHHHHh
Q psy2915 638 ANAVAALSEMNE 649 (883)
Q Consensus 638 ~~a~~~l~~i~~ 649 (883)
.+++-++..+.+
T Consensus 466 ~N~CWAf~~Lae 477 (859)
T KOG1241|consen 466 SNVCWAFISLAE 477 (859)
T ss_pred HHHHHHHHHHHH
Confidence 888888887774
No 40
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.88 E-value=4.3e-05 Score=84.83 Aligned_cols=567 Identities=15% Similarity=0.184 Sum_probs=267.1
Q ss_pred hhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHhhhCccc-cc-cccHHHH
Q psy2915 118 VGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQL-VE-DQGFLDQ 194 (883)
Q Consensus 118 ~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~-~~~VRk~A~~al~kl~~~~p~~-~~-~~~~~~~ 194 (883)
+..++-|..+.+|+||.-.-|+.|.+.+.--++.+.|.+...-.+. ++--|++.+.+..++..+..-. +. -.+++..
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 3357889999999999888888877665555666777776666555 8999999999988887643211 11 1346678
Q ss_pred HHHHhcCCChhHHHHHHHHHHhccccCCccccccccccC-CC--CcHHHHHhhccccccCCCCCCCchH-HHHHHHHHHh
Q psy2915 195 LKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQ-IC--WNLPYLMNLSVIYPAWPLSTINPHT-PLLKVLMKLM 270 (883)
Q Consensus 195 L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~-~~--w~q~~~l~l~~~~~~~~l~~~n~~v-~~~~~l~~l~ 270 (883)
+.++|.|....|+.-+..++..+++....+. +..+.. .| |.-+. ++..... +..++...++
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pyg--ie~fd~vl~pLw~g~~-------------~hrgk~l~sfLkA~g~ii 427 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYG--IEQFDEVLCPLWEGAS-------------QHRGKELVSFLKAMGFII 427 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcc--hHHHHHHHHHHHHHHH-------------hcCCchHHHHHHHhcccc
Confidence 8889999999998888888777765432211 000000 00 11110 1111111 3333333222
Q ss_pred hcCCCChhhHHHHHHHHhHHHHHhhcCC-hhHHHHHHHHHHHHHh---hCchhHHhc-ccceeeccCCCHHHHHHHH---
Q psy2915 271 EMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALRNINLIVQ---KRPDILKHE-MKVFFVKYNDPIYVKLEKL--- 342 (883)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~vr~~aL~~l~~l~~---~~~~~~~~~-~~~~~~l~~~~~~Ir~~aL--- 342 (883)
..+++ ++.....+.....+.+.++++ .+.+-..+-....-.. ..|..+... ...|+- +.-.||.|.
T Consensus 428 plm~p--eYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~----~fw~rr~A~dr~ 501 (975)
T COG5181 428 PLMSP--EYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFS----PFWRRRSAGDRR 501 (975)
T ss_pred ccCCh--HhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhc----hHHHhhhccccc
Confidence 22222 344455666777777777543 3555444433322222 223322222 223321 111222222
Q ss_pred ---------HHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhh------HHHHHHHHHHHHHhH--
Q psy2915 343 ---------DIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTK-- 405 (883)
Q Consensus 343 ---------~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~------~~~~v~~Ll~lL~~~-- 405 (883)
-+|.++.. -..+++.+.+|.+|..+-+|.-.+.+..++....+.. -+.+.+.++--++..
T Consensus 502 ~~k~v~~ttvilAk~~g---~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~ 578 (975)
T COG5181 502 SYKQVVLTTVILAKMGG---DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT 578 (975)
T ss_pred ccceeehhHHHHHHHcC---ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc
Confidence 34444443 3467888888888877767776665555544433321 123333333333222
Q ss_pred --------hhhhh--------CCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChh
Q psy2915 406 --------YAERI--------DNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPD 469 (883)
Q Consensus 406 --------~~~~i--------~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~e 469 (883)
++... +..+-++..+.+.+...++.||..++...+-+ ..+++.|.+. .+
T Consensus 579 t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl------------~~vlk~c~e~---~~ 643 (975)
T COG5181 579 TVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSL------------AKVLKACGET---KE 643 (975)
T ss_pred cccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHH------------HHHHHhcchH---HH
Confidence 11100 01122333334444444444444433222211 1111111110 11
Q ss_pred hhhhhHHHHHhhcCCc-hh-hhhhhhhHHHHHhhccC---CCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchh-
Q psy2915 470 LRDRGFIYWRLLSTGN-TF-YILLHLTRLVIASMTVG---KDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDM- 543 (883)
Q Consensus 470 vrdrA~~y~~ll~~~~-~~-~~~~~~l~kli~~~~~g---~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~- 543 (883)
.+.-....+.-++.+- +. ..+..+++.+...+-.. -+++...+.+...+.+....+---+.-..+..+...|+-
T Consensus 644 l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi 723 (975)
T COG5181 644 LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI 723 (975)
T ss_pred HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC
Confidence 1111111111111111 10 11222233322222111 133344444444554443333222333344444444431
Q ss_pred ----hHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccc
Q psy2915 544 ----AIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ 619 (883)
Q Consensus 544 ----~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~ 619 (883)
-.-++=.+...|++-|..+|+.|-.++|.|...-=.+.++..+...|+...-.-|-....+++-..+...
T Consensus 724 ~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------ 797 (975)
T COG5181 724 GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------ 797 (975)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------
Confidence 1123334445566778888888888888653322223344445555554444455455555543333211
Q ss_pred cHHHHHHHhhcC---CChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC---C-
Q psy2915 620 GFLDQLKDLLSD---SNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS---P- 692 (883)
Q Consensus 620 ~~~~~l~~lL~D---~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~- 692 (883)
....+..++.| ++..|+...+.+++.+.+... +.-.+.++...--+-..+.+.++--+.....++..+. |
T Consensus 798 -pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig--~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 798 -PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG--QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred -chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH--HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 11333445554 566677777776666553211 1122233322223334455666665555555555542 2
Q ss_pred -CChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCC
Q psy2915 693 -KDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLP 732 (883)
Q Consensus 693 -~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~ 732 (883)
.+.+.+-.+++.+-+.+-..++.|....-..+-.+++.++
T Consensus 875 tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg 915 (975)
T COG5181 875 TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLG 915 (975)
T ss_pred cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc
Confidence 2344445677777777767777665543333333333333
No 41
>KOG0213|consensus
Probab=98.87 E-value=6.7e-06 Score=92.68 Aligned_cols=428 Identities=17% Similarity=0.172 Sum_probs=248.1
Q ss_pred ChhHHHHHHHHHHHHHhhCchhHHhcc-ccee----eccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHH
Q psy2915 298 EPEVQYVALRNINLIVQKRPDILKHEM-KVFF----VKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDF 372 (883)
Q Consensus 298 ~~~vr~~aL~~l~~l~~~~~~~~~~~~-~~~~----~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~ 372 (883)
+..-|......|.++...-.+...++. +++. .+.++|.+.|..--+++..|+.......++..+..-....|+.+
T Consensus 413 eDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYV 492 (1172)
T KOG0213|consen 413 EDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYV 492 (1172)
T ss_pred cchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHH
Confidence 345666777777777777777777774 3333 47899999999999999999999999999999988888889999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH---------------h-----hhhhCCHHHHHHHHhhhhcCCCHHHH
Q psy2915 373 VRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK---------------Y-----AERIDNADELLESFLEGFHDENTQVQ 432 (883)
Q Consensus 373 r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~---------------~-----~~~i~~~~~il~~l~~~~~~~~~~vr 432 (883)
|....++.+..|..+.- +..+++|-.+-+.. . +...+....++..+-+.+.|+...||
T Consensus 493 Rnttarafavvasalgi--p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR 570 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGI--PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVR 570 (1172)
T ss_pred HHHHHHHHHHHHHHhCc--HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhh
Confidence 99998888887754431 11222221111110 0 11223333456666677888888888
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHH----hhcCC-------------CChhhhhhhHHHHH---------hhcCCch
Q psy2915 433 LQLLTAIVKLFLKRPTDTQELVQQVLSL----ATQDS-------------DNPDLRDRGFIYWR---------LLSTGNT 486 (883)
Q Consensus 433 ~~~L~al~Kl~~~~~~~~~~~l~~ll~~----~~~d~-------------~~~evrdrA~~y~~---------ll~~~~~ 486 (883)
.....+++.++-...+..-+.+..++.. ...+. --|..+..-.-|+. -++.+.+
T Consensus 571 ~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDe 650 (1172)
T KOG0213|consen 571 TITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDE 650 (1172)
T ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChH
Confidence 7654444433322111111122222221 11110 01111111111222 1112111
Q ss_pred hhhhhhhhHHHHHhh--ccCCCcccchHHHH---------HhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhc
Q psy2915 487 FYILLHLTRLVIASM--TVGKDVSALFPDVV---------NCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDC 555 (883)
Q Consensus 487 ~~~~~~~l~kli~~~--~~g~~~~~~~~~vi---------~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl 555 (883)
.....+-|++... +.|.+-.+..++++ +.++.+....|.+++.+.....+...+- .++-+..|+
T Consensus 651 --emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~---~v~R~v~~l 725 (1172)
T KOG0213|consen 651 --EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP---IVSRVVLDL 725 (1172)
T ss_pred --HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH---HHHHHhhhh
Confidence 1112333333333 23444333333332 3345555566667777766665544333 566777788
Q ss_pred CCCCHHHHHHHHHHhc----CC------------------------------------------Ch--hhhhHHHHHHHH
Q psy2915 556 EDSNPLIRALAVRTMG----CI------------------------------------------RV--DKITEYLCEPLR 587 (883)
Q Consensus 556 ~~~n~~vr~~AL~~L~----~i------------------------------------------~~--~~~~~~l~~~l~ 587 (883)
.|+++.+|.++..+.. ++ +. ....+.+...+.
T Consensus 726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 8888877766665544 11 11 223445566677
Q ss_pred hhcCCCChHHHhhHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHH
Q psy2915 588 KCLKDEDPYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQT 664 (883)
Q Consensus 588 ~~l~d~~~~VRk~A~~al~~l~~~~~~~~~---~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~ 664 (883)
..|++++|.||..|+..++++...-...-+ -..+-..|.+-|...+|.|..+.+.++..|... .+-......+...
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nv-igm~km~pPi~dl 884 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNV-IGMTKMTPPIKDL 884 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHh-ccccccCCChhhh
Confidence 788999999999999999988774332211 122334455667789999999999999888743 1111111122233
Q ss_pred HHHHHHHcccCChhhHHHHHHHHhccCCCChH--HHHHHHH---HHhHhhcCCChHHHHHHHHHHHHhhhhCCC
Q psy2915 665 INKLLTALNECTEWGQVFILDSLSNYSPKDDR--EAQSICE---RITPRLAHANAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 665 ~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~--~~~~il~---~l~~~l~~~~~aV~~eai~~i~~~~~~~~~ 733 (883)
+-+|.-+|....+=.|...+.++++++...++ .+.+.++ -|..+|.+.+-+++..|+++++.++..+++
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence 33555556566666777777877777643322 1233343 344566778889999999999999877764
No 42
>KOG0211|consensus
Probab=98.85 E-value=9.8e-06 Score=95.81 Aligned_cols=555 Identities=16% Similarity=0.138 Sum_probs=314.4
Q ss_pred hhhchhcCCCCHHHHHHHHHHhccCCc----hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhC--ccccccccHH
Q psy2915 119 GVFVKDCEDSNPLIRALAVRTMGCIRV----DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQLVEDQGFL 192 (883)
Q Consensus 119 ~~l~kDL~~~n~~vr~lALr~L~~i~~----~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~--p~~~~~~~~~ 192 (883)
-.+.+++.+.+-.-|-.+.+.++++.. +-.-..+.|.+.... +....|...++.-++.+.... |+.. ..+.
T Consensus 85 a~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~--~~ll 161 (759)
T KOG0211|consen 85 AVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYA--HMLL 161 (759)
T ss_pred HHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHH--HHhh
Confidence 337777777777777788887777643 323456778888888 888999999999988775532 3322 2345
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhccccCCcccc---ccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHH
Q psy2915 193 DQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRN---LSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKL 269 (883)
Q Consensus 193 ~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~---l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l 269 (883)
+.+..+..+...+|+..++..+..+....|.... +.+.+ .+....++.++. +.+...+...
T Consensus 162 ~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~-------------~~l~~~d~~~sr---~sacglf~~~ 225 (759)
T KOG0211|consen 162 PPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLL-------------KRLATGDWFQSR---LSACGLFGKL 225 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-------------HHccchhhhhcc---hhhhhhhHHh
Confidence 6777788899999999999999888876654331 11111 011111111111 1222233322
Q ss_pred hhcCCCChhhHHHHHHHHhHHHHHhh-c-CChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHH
Q psy2915 270 MEMLPGEGDFVSTLTKKLAPPLVTLL-S-SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIR 347 (883)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~L~~lL-~-~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~ 347 (883)
....+++ .+++-..+..+-+ . ..+++|-.+-+.++.++..-+.
T Consensus 226 ~~~~~~~------~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~----------------------------- 270 (759)
T KOG0211|consen 226 YVSLPDD------AVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES----------------------------- 270 (759)
T ss_pred ccCCChH------HHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH-----------------------------
Confidence 2222211 2333333333322 2 4556776666666666553332
Q ss_pred hcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCC
Q psy2915 348 LASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDE 427 (883)
Q Consensus 348 l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~ 427 (883)
+.-...++..+.+-..|....+|..++.+...+..-+.... .+ ...+.+.+.+...+.
T Consensus 271 ---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~------------------~~~~~~~l~~~~~d~ 328 (759)
T KOG0211|consen 271 ---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DV------------------VKSLTESLVQAVEDG 328 (759)
T ss_pred ---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hh------------------hhhhhHHHHHHhcCh
Confidence 11223344555555555556677777777776665444332 11 112223333333445
Q ss_pred CHHHHHHHHHHHHHHhhcCC-chHH-HHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhc-cC
Q psy2915 428 NTQVQLQLLTAIVKLFLKRP-TDTQ-ELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMT-VG 504 (883)
Q Consensus 428 ~~~vr~~~L~al~Kl~~~~~-~~~~-~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~-~g 504 (883)
++.++......+..++.... +... +........+... ..++|..+..- ...+......-. ..
T Consensus 329 ~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~--~~e~r~a~a~~-------------~~~l~~~l~~~~~~~ 393 (759)
T KOG0211|consen 329 SWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDE--EWEVRYAIAKK-------------VQKLACYLNASCYPN 393 (759)
T ss_pred hHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcch--hhhhhHHhhcc-------------hHHHhhhcCcccccc
Confidence 55555555444444433211 1111 1122222222221 34444332200 000111000000 00
Q ss_pred CCcccchHHHHHhhcccchhHHHHHHHHHHhhccC--CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhc-------CCCh
Q psy2915 505 KDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKS--HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG-------CIRV 575 (883)
Q Consensus 505 ~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~--~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~-------~i~~ 575 (883)
-..+..++.+-.+..+++..+|............. .+.......+.+..-+++..+.||..-...++ .+|.
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc
Confidence 01223345555566666666665533333332111 22222334455666778888999877775443 3455
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCch
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV 655 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~ 655 (883)
.-..+.++|.+..+..|.+|.||.+....+..........+.++.+.+.+..-+.|....++.+|...+..++....
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--- 550 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--- 550 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---
Confidence 66778889999999999999999999999988877544444445566666666778899999999999998886432
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCC--CChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCC
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSP--KDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~--~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~ 733 (883)
.-|. .+..+.+++....+.+-|.+..++..+..+.+ ..+-....+++.+..+..+..+.|++.+++.+-.+...+..
T Consensus 551 ~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 551 SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 1122 22445566666666667777777777766543 23334457889999999999999999999999988655543
Q ss_pred ChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhh
Q psy2915 734 EGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQK 773 (883)
Q Consensus 734 ~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~ 773 (883)
+ ..+. .+.+.+.++.. .+.|+||.+..++..+...
T Consensus 630 ~--~~~~---~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 630 S--VRDE---EVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred H--HHHH---HHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 2 1222 34444445544 5778999999888776653
No 43
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.78 E-value=2.2e-06 Score=94.61 Aligned_cols=341 Identities=15% Similarity=0.128 Sum_probs=193.4
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccccc---ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCc
Q psy2915 147 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED---QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYW 223 (883)
Q Consensus 147 ~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~---~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~ 223 (883)
.....++..+.+.|+++.|.||..|+-.++.+...-..+-+. ...-..|.+-|.+.+|.|+++.+.++..|...+.-
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcc
Confidence 344566778888999999999999998777665433222211 11224556666788999999998888887543210
Q ss_pred cccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhh-cCChhHH
Q psy2915 224 QRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL-SSEPEVQ 302 (883)
Q Consensus 224 ~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~vr 302 (883)
. +- -|+ ++.+.+.|.-.| ++...+.
T Consensus 680 ~------------------------------~m----------------qpP--------i~~ilP~ltPILrnkh~Kv~ 705 (975)
T COG5181 680 R------------------------------SM----------------QPP--------ISGILPSLTPILRNKHQKVV 705 (975)
T ss_pred c------------------------------cc----------------CCc--------hhhccccccHhhhhhhHHHh
Confidence 0 00 011 223344444444 3455677
Q ss_pred HHHHHHHHHHHhhCchhHH--hcc----cceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHH
Q psy2915 303 YVALRNINLIVQKRPDILK--HEM----KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKA 376 (883)
Q Consensus 303 ~~aL~~l~~l~~~~~~~~~--~~~----~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~a 376 (883)
.-.+.-++.|+...|..+. +|+ ..+..|.+-...|||-|.+.++-+...=.=..++..|.+.++..+.+-|.-.
T Consensus 706 ~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~Rvct 785 (975)
T COG5181 706 ANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCT 785 (975)
T ss_pred hhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhh
Confidence 7777778888888887654 233 2233344455556666666555544433344455555555555455555444
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHH---H
Q psy2915 377 VRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQE---L 453 (883)
Q Consensus 377 i~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~---~ 453 (883)
..+|+..|+--.+ -.++..+...|..+...||...|.|.+-+|-.......+ .
T Consensus 786 svaI~iVae~cgp------------------------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~ 841 (975)
T COG5181 786 SVAISIVAEYCGP------------------------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS 841 (975)
T ss_pred hhhhhhhHhhcCc------------------------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554432111 136667777788888899999999998877654333222 3
Q ss_pred HHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHH
Q psy2915 454 VQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYL 533 (883)
Q Consensus 454 l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~ 533 (883)
+.+++.-+..|. |+--|+-|......+... -.|.....++.++++++ +
T Consensus 842 itPlleDAltDr-D~vhRqta~nvI~Hl~Ln-----------------c~gtg~eda~IHLlNll--------------w 889 (975)
T COG5181 842 ITPLLEDALTDR-DPVHRQTAMNVIRHLVLN-----------------CPGTGDEDAAIHLLNLL--------------W 889 (975)
T ss_pred hhHHHHhhhccc-chHHHHHHHHHHHHHhcC-----------------CCCcccHHHHHHHHHHh--------------h
Confidence 445566666663 677776665333322211 12223333444444433 2
Q ss_pred HhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc
Q psy2915 534 MNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA 613 (883)
Q Consensus 534 ~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~ 613 (883)
.... ++.|.+...-...+-.+..---...++..+.+.|-|++..|||+-....-.+|..+.
T Consensus 890 pNIl-------------------e~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~ 950 (975)
T COG5181 890 PNIL-------------------EPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDS 950 (975)
T ss_pred hhcc-------------------CCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhccc
Confidence 2222 334443333222222211111113455678999999999999988777777776666
Q ss_pred ccc
Q psy2915 614 QLV 616 (883)
Q Consensus 614 ~~~ 616 (883)
+.+
T Consensus 951 dam 953 (975)
T COG5181 951 DAM 953 (975)
T ss_pred ccc
Confidence 554
No 44
>KOG0211|consensus
Probab=98.78 E-value=1e-06 Score=104.01 Aligned_cols=387 Identities=18% Similarity=0.194 Sum_probs=246.9
Q ss_pred HHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHH--HH
Q psy2915 453 LVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKL--VY 530 (883)
Q Consensus 453 ~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~--~y 530 (883)
++..+...+... ...+|+.+.+ .+.+++..+..-.. ...+.+++..+...++...|+ +-
T Consensus 160 ll~~le~l~~~e--et~vr~k~ve----------------~l~~v~~~~~~~~~-~~~lv~l~~~l~~~d~~~sr~sacg 220 (759)
T KOG0211|consen 160 LLPPLELLATVE--ETGVREKAVE----------------SLLKVAVGLPKEKL-REHLVPLLKRLATGDWFQSRLSACG 220 (759)
T ss_pred hhHHHHhhhHHH--HHHHHHHHHH----------------HHHHHHHhcChHHH-HHHHHHHHHHccchhhhhcchhhhh
Confidence 333344444443 5778888873 33333333322111 233455555565666666555 34
Q ss_pred HHHHhhccCC-chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh----hhhhHHHHHHHHhhcCCCChHHHhhHHHHH
Q psy2915 531 LYLMNYAKSH-PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV----DKITEYLCEPLRKCLKDEDPYVRKTAAVCV 605 (883)
Q Consensus 531 l~~~~~~~~~-~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~----~~~~~~l~~~l~~~l~d~~~~VRk~A~~al 605 (883)
++...+.... +.+..-..+..+..++|.+|+||.++.+.+|++.. ......+.+....+..|....||-.|..++
T Consensus 221 lf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~ 300 (759)
T KOG0211|consen 221 LFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESL 300 (759)
T ss_pred hhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHH
Confidence 5555555554 55666677888899999999999999999998733 445555778888889999999999999999
Q ss_pred HHHHhhcccc-cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHH--
Q psy2915 606 AKLYDINAQL-VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVF-- 682 (883)
Q Consensus 606 ~~l~~~~~~~-~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~-- 682 (883)
..+....... -....+.+.+.+..+|.+..|+........++...-. ++..+......+..+++ ..+|..-.
T Consensus 301 ~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~-~~~~~~~~~~~~~~l~~----~~~~e~r~a~ 375 (759)
T KOG0211|consen 301 VSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG-PSATRTQLVPPVSNLLK----DEEWEVRYAI 375 (759)
T ss_pred HHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc-cccCcccchhhHHHHhc----chhhhhhHHh
Confidence 9988865433 1123577888888899999999999988888875321 12222222222222222 33442211
Q ss_pred --HHHHHhccCCC---ChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CC
Q psy2915 683 --ILDSLSNYSPK---DDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SE 756 (883)
Q Consensus 683 --iL~lL~~~~~~---~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~ 756 (883)
-.+-+..+.+. ..--...+++.+..++.+.+..|.-..+..+..+.+.+|. ++.+..+.+.++.+++ ..
T Consensus 376 a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k-----~~ti~~llp~~~~~l~de~ 450 (759)
T KOG0211|consen 376 AKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK-----ERTISELLPLLIGNLKDED 450 (759)
T ss_pred hcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc-----CcCccccChhhhhhcchhh
Confidence 22333333321 1111124578888899999999999999999888777764 3455667777776666 47
Q ss_pred cchHHHHHHHHHHHHhhCc----hhHhh-ccceeEEccCC-CHHHHHHHHHHHHHhccccchhh---------------h
Q psy2915 757 PEVQYVALRNINLIVQKRP----DILKH-EMKVFFVKYND-PIYVKLEKLDIMIRLASQANIAQ---------------V 815 (883)
Q Consensus 757 ~niry~aL~~l~~l~~~~~----~~~~~-~~~~~~~l~~d-d~~Ir~~~l~lL~~l~~~~N~~~---------------~ 815 (883)
+.+|......+..+..... ..+++ +++.+.++..| .|++|.+.++-+..++.+..... .
T Consensus 451 ~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~ 530 (759)
T KOG0211|consen 451 PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDH 530 (759)
T ss_pred HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhh
Confidence 8888888877655555432 22333 45777777766 89999999999999999999665 2
Q ss_pred hHHHHHHHH-HHHHHHhhCCC-c-hHHHHHHHHhhcccCCcHHHHHHHHHHHhcCcC
Q psy2915 816 NYVVQEAIV-VIKDIFRKYPN-K-YETIISTLCENLDTLDEPEARASMIWIIGEYAE 869 (883)
Q Consensus 816 ~~~~~e~i~-~i~~l~~~~p~-~-~~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~ 869 (883)
.|.+++.+. .+..+++.|.. + ..+++.++.....+- +---|.+++..+-++++
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAE 586 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHH
Confidence 456666555 88899999863 2 345555555544321 23344444444444443
No 45
>KOG1020|consensus
Probab=98.68 E-value=0.00055 Score=83.78 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=89.4
Q ss_pred hchhcCCCCHHHHHHHHHHhccCCc--hhh--hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHH
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCIRV--DKI--TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK 196 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i~~--~~~--~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~ 196 (883)
+..-+..+.+-+|+-|+|+|+.+.. |.+ -+.+...|..-+.|++..||-+|+--++|...-+|+.+ ..+.+.+.
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~--~qyY~~i~ 898 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELI--FQYYDQII 898 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHH--HHHHHHHH
Confidence 7777889999999999999999864 332 25667778888999999999999999999999999998 45888898
Q ss_pred HHhcCCChhHHHHHHHHHHhccccCCccc
Q psy2915 197 DLLSDSNPMVVANAVAAILLLPRKSYWQR 225 (883)
Q Consensus 197 ~lL~D~d~~V~~~a~~~L~ei~~~~~~~~ 225 (883)
+-..|+...||-.|+.-+.++|...|...
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhCCChh
Confidence 88899999999999999999999887654
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.67 E-value=4.5e-05 Score=88.73 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=120.3
Q ss_pred hchhcCCCCHHHHHHHHHHhccC----CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcc---ccccccHHH
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ---LVEDQGFLD 193 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i----~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~---~~~~~~~~~ 193 (883)
+...|++.++.....+.+.|..+ ...++.+...+.+.+++.|+++.||.-|+.++.++.+.... .+.+.+.++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 44556666777777776555554 33455777888999999999999999999999998764432 334567889
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcC
Q psy2915 194 QLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEML 273 (883)
Q Consensus 194 ~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~ 273 (883)
.+..++.|+|..|...|+.+|..+++..+... .++
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~---------------------------------------~l~------ 157 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLE---------------------------------------QLF------ 157 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH---------------------------------------HHh------
Confidence 99999999999999999999999987543221 110
Q ss_pred CCChhhHHHHHHHHhHHHHHhhcC-ChhHHHHHHHHHHHHHhhCchhHHhcc------cceeeccCCCHHHHHHHHHHHH
Q psy2915 274 PGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDILKHEM------KVFFVKYNDPIYVKLEKLDIMI 346 (883)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~lL~~-~~~vr~~aL~~l~~l~~~~~~~~~~~~------~~~~~l~~~~~~Ir~~aL~iL~ 346 (883)
++ .....|..++.. ++.+|+-+++.+..++...++.+.... ..+.++.++|.-+|.-++++|.
T Consensus 158 ~~----------~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 158 DS----------NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred Cc----------chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 00 113445555555 667888899999999888877664321 2233455555555555555555
Q ss_pred HhcC
Q psy2915 347 RLAS 350 (883)
Q Consensus 347 ~l~~ 350 (883)
.|+.
T Consensus 228 ~La~ 231 (503)
T PF10508_consen 228 ELAE 231 (503)
T ss_pred HHHc
Confidence 5544
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.67 E-value=1.2e-05 Score=93.51 Aligned_cols=317 Identities=16% Similarity=0.238 Sum_probs=207.1
Q ss_pred hhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcCCCCHHHHHH
Q psy2915 491 LHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCEDSNPLIRAL 565 (883)
Q Consensus 491 ~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~vr~~ 565 (883)
.+.+++++.....+.-...+...+...+.+++..+|+.+...++.+.+.+.....+ +...+..-+.+++..|...
T Consensus 59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~ 138 (503)
T PF10508_consen 59 CDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKA 138 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHH
Confidence 35566666555332224445555677899999999999888888876655432221 3455667788999999999
Q ss_pred HHHHhcCCCh-hhhhHHH-----HHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhH
Q psy2915 566 AVRTMGCIRV-DKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLSDSNPMV 636 (883)
Q Consensus 566 AL~~L~~i~~-~~~~~~l-----~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~---~~~~~~~l~~lL~D~d~~V 636 (883)
|.+.|.++.. +...+.+ .+.+.+++..+++.||.++...+.++.+.+++... +..+++.+...|+++|.-|
T Consensus 139 A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLv 218 (503)
T PF10508_consen 139 AIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILV 218 (503)
T ss_pred HHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHH
Confidence 9999998843 3333344 67788888888999999999999999998877754 3347888888889999999
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc--CCh-hhHHH---HHHHHhccCCCChHHH----HHHHHHHh
Q psy2915 637 VANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE--CTE-WGQVF---ILDSLSNYSPKDDREA----QSICERIT 706 (883)
Q Consensus 637 ~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~--~~~-w~qi~---iL~lL~~~~~~~~~~~----~~il~~l~ 706 (883)
+.+++..+.+++.. +..-.++.- ...+.++.+.+.+ .+| +.... .+++++.....++... ..+++.+.
T Consensus 219 qlnalell~~La~~-~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 219 QLNALELLSELAET-PHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF 296 (503)
T ss_pred HHHHHHHHHHHHcC-hhHHHHHHh-CCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99999999999984 333233321 2456677776643 355 44433 4555555544343333 35666777
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhhCCCChhhH----HHHHHHhhhHHHHhc-cCCcchHHHHHHHHHHHHhhCch-----
Q psy2915 707 PRLAHANAAVVLSAVKVLMKLMEMLPGEGDFV----STLTKKLAPPLVTLL-SSEPEVQYVALRNINLIVQKRPD----- 776 (883)
Q Consensus 707 ~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~----~~~~~~~~~~L~~ll-~~~~niry~aL~~l~~l~~~~~~----- 776 (883)
..+++.+....--|+.+++.++....+. .++ +..++.+........ +...++|-.+|+++..+....++
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~ 375 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND 375 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH
Confidence 7778888877777777777774111111 111 111122222222222 34568999999999999665432
Q ss_pred h--H-h-------hc-cc-eeEEccCCC-HHHHHHHHHHHHHhcccc
Q psy2915 777 I--L-K-------HE-MK-VFFVKYNDP-IYVKLEKLDIMIRLASQA 810 (883)
Q Consensus 777 ~--~-~-------~~-~~-~~~~l~~dd-~~Ir~~~l~lL~~l~~~~ 810 (883)
+ + . +. .. .+..+...| +-||..++.++..+|...
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 1 1 1 11 11 333333444 889999999999999886
No 48
>KOG0166|consensus
Probab=98.63 E-value=9.1e-05 Score=83.08 Aligned_cols=257 Identities=20% Similarity=0.250 Sum_probs=174.5
Q ss_pred hHHHHHhhc-ccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHH-
Q psy2915 511 FPDVVNCMQ-TDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRTMGCIR--VDKITEY- 581 (883)
Q Consensus 511 ~~~vi~ll~-s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~~~~~~- 581 (883)
.+..++.+. .++..++--+..++...+...++... -++..|.+.+.++++.|+.-|+-+||++. ++...+.
T Consensus 111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v 190 (514)
T KOG0166|consen 111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV 190 (514)
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence 444455554 33355555566666666554443222 25667888999999999999999999983 3444444
Q ss_pred ----HHHHHHhhcCCCCh-HHHhhHHHHHHHHHhhc-c--cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCC
Q psy2915 582 ----LCEPLRKCLKDEDP-YVRKTAAVCVAKLYDIN-A--QLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTS 653 (883)
Q Consensus 582 ----l~~~l~~~l~d~~~-~VRk~A~~al~~l~~~~-~--~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~ 653 (883)
.++++...+..+++ ...+.|.-++.++++.- | ..-......+.|..++.+.|+.|..-|+-++.++....++
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 33666777776665 67788999999999853 3 2222345778889999999999999999999999865332
Q ss_pred chhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHH-----HHHHHhHhhc-CCChHHHHHHHHHHHHh
Q psy2915 654 GVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQS-----ICERITPRLA-HANAAVVLSAVKVLMKL 727 (883)
Q Consensus 654 ~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~l~-~~~~aV~~eai~~i~~~ 727 (883)
..-..+.-..+.+|...|....+=.+.-.||.++.....++...+. .++++..++. +....+.-||+-++.++
T Consensus 271 -~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 -KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred -HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 1222233345667777777777777777999999987777766554 4567778887 55668999999999998
Q ss_pred hhhCCCChhhHHHHHH-HhhhHHHHhccC-CcchHHHHHHHHHHHH
Q psy2915 728 MEMLPGEGDFVSTLTK-KLAPPLVTLLSS-EPEVQYVALRNINLIV 771 (883)
Q Consensus 728 ~~~~~~~~~l~~~~~~-~~~~~L~~ll~~-~~niry~aL~~l~~l~ 771 (883)
. .+.++-.+.++. .+.|.|+.++++ +-.+|-=|.-.+.-+.
T Consensus 350 t---AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 350 T---AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred h---cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 6 344444444444 677778887764 4456655554444433
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.60 E-value=3.7e-06 Score=94.00 Aligned_cols=211 Identities=18% Similarity=0.061 Sum_probs=151.2
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 590 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l 590 (883)
...+++.+.+.+..++.-.--+++.+.... +...+.+.+++++|.+|..++.+++..+.. - .+.+..++
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------a~~~L~~~L~~~~p~vR~aal~al~~r~~~-~----~~~L~~~L 156 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------AEPWLEPLLAASEPPGRAIGLAALGAHRHD-P----GPALEAAL 156 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchH------HHHHHHHHhcCCChHHHHHHHHHHHhhccC-h----HHHHHHHh
Confidence 455667777777777777777777665432 556778888999999999999988875432 2 34577778
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLT 670 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~ 670 (883)
+|++|+||..|+.+++.+.. ....+.|...+.|.|+.||.+|+..+..++.. .....+..
T Consensus 157 ~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~------------~A~~~l~~ 216 (410)
T TIGR02270 157 THEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR------------LAWGVCRR 216 (410)
T ss_pred cCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHH
Confidence 99999999999999998732 23457788899999999999999999888642 23333333
Q ss_pred HcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHH
Q psy2915 671 ALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLV 750 (883)
Q Consensus 671 ~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~ 750 (883)
...+.+.+....+..++...+. + ..++.|..++++.. |..+++.++..+ +. + ..++.|+
T Consensus 217 ~~~~~g~~~~~~l~~~lal~~~--~----~a~~~L~~ll~d~~--vr~~a~~AlG~l----g~-p--------~av~~L~ 275 (410)
T TIGR02270 217 FQVLEGGPHRQRLLVLLAVAGG--P----DAQAWLRELLQAAA--TRREALRAVGLV----GD-V--------EAAPWCL 275 (410)
T ss_pred HHhccCccHHHHHHHHHHhCCc--h----hHHHHHHHHhcChh--hHHHHHHHHHHc----CC-c--------chHHHHH
Confidence 2334455544444444444322 2 66788888888755 899999999987 22 2 2566677
Q ss_pred HhccCCcchHHHHHHHHHHHHhhC
Q psy2915 751 TLLSSEPEVQYVALRNINLIVQKR 774 (883)
Q Consensus 751 ~ll~~~~niry~aL~~l~~l~~~~ 774 (883)
..+...+ ++.++-+.+.+|.-..
T Consensus 276 ~~l~d~~-~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 276 EAMREPP-WARLAGEAFSLITGMD 298 (410)
T ss_pred HHhcCcH-HHHHHHHHHHHhhCCC
Confidence 7666555 9999999999987743
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.59 E-value=1.4e-06 Score=86.73 Aligned_cols=145 Identities=28% Similarity=0.446 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhH
Q psy2915 559 NPLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMV 636 (883)
Q Consensus 559 n~~vr~~AL~~L~~i--~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V 636 (883)
||.+|+.|+.++|.+ .-|.+.+...|.+..+|.|++|.||+.|+.++.++...+.-.+.. .++..+..++.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 688999999999965 568899999999999999999999999999999998876666553 34466667889999999
Q ss_pred HHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhh---------HHHHHHHHhccCCCChHHHHHHHHHHhH
Q psy2915 637 VANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWG---------QVFILDSLSNYSPKDDREAQSICERITP 707 (883)
Q Consensus 637 ~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~---------qi~iL~lL~~~~~~~~~~~~~il~~l~~ 707 (883)
+..|...+.++.... ++..+. ..+..++..+.....|. ...+++.+-.+-.+ ++..+.+++.+..
T Consensus 80 r~~A~~~~~e~~~~~-~~~~i~----~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~ 153 (178)
T PF12717_consen 80 RSLARSFFSELLKKR-NPNIIY----NNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQ 153 (178)
T ss_pred HHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHH
Confidence 999999999999761 223333 33334444444443333 33466666555553 3344455555544
Q ss_pred hhc
Q psy2915 708 RLA 710 (883)
Q Consensus 708 ~l~ 710 (883)
.+.
T Consensus 154 ~~~ 156 (178)
T PF12717_consen 154 RFL 156 (178)
T ss_pred HHH
Confidence 433
No 51
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.53 E-value=0.00039 Score=78.41 Aligned_cols=144 Identities=24% Similarity=0.250 Sum_probs=104.7
Q ss_pred CcccchHHHH-Hhhcc----cchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcC-CCCHHHHHHHHHHhcCCCh--hh
Q psy2915 506 DVSALFPDVV-NCMQT----DNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE-DSNPLIRALAVRTMGCIRV--DK 577 (883)
Q Consensus 506 ~~~~~~~~vi-~ll~s----~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~-~~n~~vr~~AL~~L~~i~~--~~ 577 (883)
.+-.-|.+++ +...+ +|..+.+.+|+.+..+.-.+.+.-.--.+.+..-+. +|+|.+|+.|+-.||.+.. ..
T Consensus 888 svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 888 SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 3444566655 45555 678888999999887743332222222233333344 8999999999999997633 44
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS 651 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~ 651 (883)
+++..-..+.+.|.|.+..|||.+.+.+.-+.-.+.-.+ ....+.+..+|.|+|.++.--|-..+.++++.+
T Consensus 968 ~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KV--KGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 968 TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV--KGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceee--ccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 556666678888999999999999999987765544333 455688999999999999999999999999764
No 52
>KOG1242|consensus
Probab=98.50 E-value=6.5e-05 Score=84.69 Aligned_cols=414 Identities=16% Similarity=0.161 Sum_probs=216.1
Q ss_pred CCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhc-CCChhHHHHHHHHHHhccccCCccccccccccCCCCcHH
Q psy2915 161 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS-DSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLP 239 (883)
Q Consensus 161 ~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~-D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~ 239 (883)
.|+.+.||++-+.|....+..+.+... ..+.+...+.|+ +.+..++.+.+...+....+-+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v-~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~----------------- 88 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV-LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQ----------------- 88 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH-HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcc-----------------
Confidence 789999999988888877765544322 235566666665 3455555555554444433211
Q ss_pred HHHhhccccccCCCCCCCchH-HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcCChhHHHHHHHHHHHHHhhCch
Q psy2915 240 YLMNLSVIYPAWPLSTINPHT-PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPD 318 (883)
Q Consensus 240 ~~l~l~~~~~~~~l~~~n~~v-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~~~~vr~~aL~~l~~l~~~~~~ 318 (883)
...+.+ ..+..+ .+.++..+...++.+..|.+++...+...+...+ +
T Consensus 89 ---------------~~d~~~~~~~~~~---~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~--l------------ 136 (569)
T KOG1242|consen 89 ---------------IVDPRPISIIEIL---LEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYV--L------------ 136 (569)
T ss_pred ---------------ccCcchhHHHHHH---HHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHH--H------------
Confidence 112222 122222 2233333344445555555555554332211110 0
Q ss_pred hHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHH-----HHHHHHHHhhhhcCHHHHHH-HHHHHHHHHhhc-hhhH
Q psy2915 319 ILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIA-----QVLSELKEYATEVDVDFVRK-AVRAIGRCAIKV-EQSA 391 (883)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~-----~Il~eL~~~~~~~d~~~r~~-ai~aI~~la~k~-~~~~ 391 (883)
-..+.++..++..-|..+-.-+..+++..-+. .++..|.....+.....+++ +..+........ ++..
T Consensus 137 -----~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E 211 (569)
T KOG1242|consen 137 -----ELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE 211 (569)
T ss_pred -----HHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC
Confidence 01122344555666777777777776654442 36777777777776666665 222221111111 2222
Q ss_pred HHHHHHHHHHHHhHhhhhhC--------------------CHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHH
Q psy2915 392 ERCVSTLLDLIQTKYAERID--------------------NADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQ 451 (883)
Q Consensus 392 ~~~v~~Ll~lL~~~~~~~i~--------------------~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~ 451 (883)
+-.++.+-.++..- ++..+ ....++..++..+.+..|..+...+..++-+....|.+..
T Consensus 212 Pyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 212 PYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred chHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 33333333333331 22111 0123444455555555667777777766655555554433
Q ss_pred HHHHHH---HHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccc-hhHHH
Q psy2915 452 ELVQQV---LSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDN-LELKK 527 (883)
Q Consensus 452 ~~l~~l---l~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~-~~~kr 527 (883)
..++.+ +.....|+ +++||..+.+-..-++.-.+. .+++...+..++.+++++ .....
T Consensus 291 ~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN-----------------~dI~~~ip~Lld~l~dp~~~~~e~ 352 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDN-----------------PDIQKIIPTLLDALADPSCYTPEC 352 (569)
T ss_pred HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhcc-----------------HHHHHHHHHHHHHhcCcccchHHH
Confidence 333333 23334453 788887776433333222211 234444555556665555 33333
Q ss_pred HHHHHHHhhccC-C-chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---C-h----hhhhHHHHHHHHhhcCCCChHH
Q psy2915 528 LVYLYLMNYAKS-H-PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---R-V----DKITEYLCEPLRKCLKDEDPYV 597 (883)
Q Consensus 528 ~~yl~~~~~~~~-~-~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~-~----~~~~~~l~~~l~~~l~d~~~~V 597 (883)
+--+..+.+-.. . |.+ .++++-+++++...+...++.+....+++ . + ..+.+.++|.++..+.|+.|.|
T Consensus 353 ~~~L~~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 353 LDSLGATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHhhcceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 333333333222 2 334 56778888888887766666666555554 2 2 2355667788888888889999
Q ss_pred HhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCC-hhHHHHHHHHHHHHHhc
Q psy2915 598 RKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSN-PMVVANAVAALSEMNEA 650 (883)
Q Consensus 598 Rk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d-~~V~~~a~~~l~~i~~~ 650 (883)
|-.|+.+++.+.+...+... ++..+.+.+.+.+.- ...+.-+...+.+++..
T Consensus 432 R~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 432 RAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred HHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence 99999999888775433322 345577777776433 33455556666666643
No 53
>KOG0166|consensus
Probab=98.50 E-value=5.1e-05 Score=85.09 Aligned_cols=336 Identities=20% Similarity=0.236 Sum_probs=216.3
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhcCCc------hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhh
Q psy2915 420 FLEGFHDENTQVQLQLLTAIVKLFLKRPT------DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHL 493 (883)
Q Consensus 420 l~~~~~~~~~~vr~~~L~al~Kl~~~~~~------~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~ 493 (883)
........+...+.+...++-|+...... .....++.+......+ +++.+|-.|...+.-+..+.....
T Consensus 71 ~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T---- 145 (514)
T KOG0166|consen 71 MLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQT---- 145 (514)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhc----
Confidence 33444445556688888888888776432 1123344444444444 478888877755554444322110
Q ss_pred hHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhH-----HHHHHhhcCCCCH--HHH--H
Q psy2915 494 TRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMA-----VNTFVKDCEDSNP--LIR--A 564 (883)
Q Consensus 494 l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~-----~n~l~kdl~~~n~--~vr--~ 564 (883)
++ .--....+..+.++++++..++..+..+++......+.....+ +..+...++.+++ +.| .
T Consensus 146 --~~-------vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t 216 (514)
T KOG0166|consen 146 --KV-------VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNAT 216 (514)
T ss_pred --cc-------cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHH
Confidence 00 0113345556899999999999999999999988887765554 3456666666664 444 3
Q ss_pred HHHHHhcCCCh----hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHH
Q psy2915 565 LAVRTMGCIRV----DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVV 637 (883)
Q Consensus 565 ~AL~~L~~i~~----~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~ 637 (883)
.+|..||.-.. .+....++|.+.+++.+.++.|..-|+-|+.-+....++. +.+...++.|..+|.-.++.|+
T Consensus 217 W~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 217 WTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc
Confidence 34555555443 2466678899999999999999999999998776655544 3356788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcc-cCChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcC
Q psy2915 638 ANAVAALSEMNEASTSGVALIEMNAQTINKLLTALN-ECTEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAH 711 (883)
Q Consensus 638 ~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~-~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~ 711 (883)
..|+.+++.|...+. .+...-+....+..|...+. .+.+-......-++..++....+..+ .+++.|..++++
T Consensus 297 ~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 297 TPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred cHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 999999999875432 11222233334444554444 22333334466667777666665554 456788899999
Q ss_pred CChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHh
Q psy2915 712 ANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 712 ~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~ 772 (883)
..--+..||+-+|.+++ .+++++...-.++ .+++++..+|. .++.+--++|+.+.-+.+
T Consensus 376 ~ef~~rKEAawaIsN~t--s~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLT--SSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred cchHHHHHHHHHHHhhc--ccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 99999999999999885 2344443333322 57778888775 344444444555544443
No 54
>KOG1242|consensus
Probab=98.48 E-value=0.00045 Score=78.09 Aligned_cols=446 Identities=15% Similarity=0.165 Sum_probs=250.3
Q ss_pred CCCHHHHHHHHHHHHHhc---ChhhHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhh
Q psy2915 332 NDPIYVKLEKLDIMIRLA---SQANIAQVLSELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYA 407 (883)
Q Consensus 332 ~~~~~Ir~~aL~iL~~l~---~~~nv~~Il~eL~~~~~~~-d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~ 407 (883)
|+.+-++..-++...... ++.|+..+.+-..+++... +..+|...+.--|.++.+.+....
T Consensus 28 d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~--------------- 92 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDP--------------- 92 (569)
T ss_pred CcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCc---------------
Confidence 444556665555555444 4556666666666665433 445555666666666643332111
Q ss_pred hhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHH-HHHHHHHHhhcCCCChhhhhhh-HHHHHhhcCCc
Q psy2915 408 ERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQE-LVQQVLSLATQDSDNPDLRDRG-FIYWRLLSTGN 485 (883)
Q Consensus 408 ~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~-~l~~ll~~~~~d~~~~evrdrA-~~y~~ll~~~~ 485 (883)
....+++.+.+.....+..+|....+++.-+.......... ....+.+... .. +..-|..| ...+.+.+...
T Consensus 93 ----~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~-~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 93 ----RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT-ST-KIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred ----chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-cc-cHHHHhhhhHHHHHHHcCcH
Confidence 11235555666667788888988888776554433332223 3333333333 21 23333333 33333333221
Q ss_pred hhhhhhhhhHHHHHhhccCCCcccchHH-HHHhhcccchhHHHH----HHHHH-HhhccCC-chhhHhHHHHHHhhcCCC
Q psy2915 486 TFYILLHLTRLVIASMTVGKDVSALFPD-VVNCMQTDNLELKKL----VYLYL-MNYAKSH-PDMAIMAVNTFVKDCEDS 558 (883)
Q Consensus 486 ~~~~~~~~l~kli~~~~~g~~~~~~~~~-vi~ll~s~~~~~kr~----~yl~~-~~~~~~~-~~~~~l~~n~l~kdl~~~ 558 (883)
. + ....+.|+. +.+...+.+...+|. ++.+. +.++... |.+ .-..+++..-..|.
T Consensus 167 i-----~------------~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi-v~~lp~il~~~~d~ 228 (569)
T KOG1242|consen 167 I-----E------------SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI-VPILPSILTNFGDK 228 (569)
T ss_pred H-----h------------hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH-HhhHHHHHHHhhcc
Confidence 0 0 012233333 344555555555553 22222 2223332 344 44567777778888
Q ss_pred CHHHHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCC
Q psy2915 559 NPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSDSN 633 (883)
Q Consensus 559 n~~vr~~AL~~L~~i---~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D~d 633 (883)
.+.||.+|-.+.-.+ -++.-...++|.+...+.+..|.-+.+++..++.+....|..+. -++.+|.+.+.|.|..
T Consensus 229 ~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~ 308 (569)
T KOG1242|consen 229 INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK 308 (569)
T ss_pred chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC
Confidence 889998776655433 33334444555555555555999999999999988887776543 3578899999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC---CCChHHHHHHHHHHhHhhc
Q psy2915 634 PMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS---PKDDREAQSICERITPRLA 710 (883)
Q Consensus 634 ~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~~~~~~~~~il~~l~~~l~ 710 (883)
|.|+.++..++..++.-..+++ +.+.+..|++.+.++..- ....++.|..-. --++....-+++.+..-++
T Consensus 309 ~evr~a~~~~l~~~~svidN~d-----I~~~ip~Lld~l~dp~~~-~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~ 382 (569)
T KOG1242|consen 309 PEVRKAGIETLLKFGSVIDNPD-----IQKIIPTLLDALADPSCY-TPECLDSLGATTFVAEVDAPSLALMVPILKRGLA 382 (569)
T ss_pred HHHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhcCcccc-hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHh
Confidence 9999999999999986533322 335556777777665532 233444444321 1123333355667777788
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch-hHhhccceeE-E
Q psy2915 711 HANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD-ILKHEMKVFF-V 787 (883)
Q Consensus 711 ~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~-~~~~~~~~~~-~ 787 (883)
.++......++..+.+++...+...+ ..-.+..+.|-+..-+. -.||+|+++.+.+..+.....+ .+..-.+.+. .
T Consensus 383 eRst~~kr~t~~IidNm~~LveDp~~-lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 383 ERSTSIKRKTAIIIDNMCKLVEDPKD-LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred hccchhhhhHHHHHHHHHHhhcCHHH-HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 88999999999999988755533212 22233344444443333 3699999999999888876532 2221122111 1
Q ss_pred ccCC-CHHHHHHHHHHHHHhccccchhhhhHHHHHHH
Q psy2915 788 KYND-PIYVKLEKLDIMIRLASQANIAQVNYVVQEAI 823 (883)
Q Consensus 788 l~~d-d~~Ir~~~l~lL~~l~~~~N~~~~~~~~~e~i 823 (883)
..++ ..--|.-+.+.+...+-..+++.......+.+
T Consensus 462 ~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~ 498 (569)
T KOG1242|consen 462 LTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEIL 498 (569)
T ss_pred hccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHH
Confidence 1111 11224555666666666667665333344433
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.43 E-value=3e-05 Score=80.37 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=78.9
Q ss_pred ccccchhhhchhcCCCCHHHHHHHHHHhccC----Cchhhh----HHHHHHHHhhc-CCCChhHHHHHHHHHHHHhhhC-
Q psy2915 113 DLCSSVGVFVKDCEDSNPLIRALAVRTMGCI----RVDKIT----EYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDIN- 182 (883)
Q Consensus 113 ~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i----~~~~~~----~~l~~~v~~~l-~d~~~~VRk~A~~al~kl~~~~- 182 (883)
|.|..++++.++|.|.+-.-+-.|.--.-++ ..|.+- .-++|.....+ ++......-.|+.|+..+..-.
T Consensus 68 q~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 68 QFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 4466777788888888766655554322222 222221 22345556666 5667778889999999987522
Q ss_pred --ccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc
Q psy2915 183 --AQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR 225 (883)
Q Consensus 183 --p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~ 225 (883)
...+.|.+.+|.+..+|.+++..|+-.|+++|+-++.+.+..+
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 2334477889999999999999999999999999987765444
No 56
>KOG2062|consensus
Probab=98.42 E-value=0.0028 Score=72.53 Aligned_cols=264 Identities=15% Similarity=0.146 Sum_probs=150.3
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHh-------------
Q psy2915 434 QLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIAS------------- 500 (883)
Q Consensus 434 ~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~------------- 500 (883)
.+|-|++-++.... .....+++++..+. +++.||.=++.-+.+.+.+.....+-+.+|.+++.
T Consensus 398 GalyAlGLIhA~hG---~~~~~yL~~~Lk~~-~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 398 GALYALGLIHANHG---RGITDYLLQQLKTA-ENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred chhhhhhccccCcC---ccHHHHHHHHHHhc-cchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 34556665554432 33677778877776 48999988887777766655444444666655554
Q ss_pred --hccCCCcccchHHHHHhhcccc-hhHHHH--HHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcC--C
Q psy2915 501 --MTVGKDVSALFPDVVNCMQTDN-LELKKL--VYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGC--I 573 (883)
Q Consensus 501 --~~~g~~~~~~~~~vi~ll~s~~-~~~kr~--~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~--i 573 (883)
+++|.--..++.++..-.+... ....|- .-+++..|+... -+=+.+.+.+.|.+|..|....-+++. .
T Consensus 474 Gl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe-----~Ad~lI~el~~dkdpilR~~Gm~t~alAy~ 548 (929)
T KOG2062|consen 474 GLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE-----DADPLIKELLRDKDPILRYGGMYTLALAYV 548 (929)
T ss_pred hhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh-----hhHHHHHHHhcCCchhhhhhhHHHHHHHHh
Confidence 2344333334444433332222 222332 445566666553 133456666778899998766555442 1
Q ss_pred --ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhc
Q psy2915 574 --RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 574 --~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~ 650 (883)
+.......++ .-+.+|.+..||++|+.+++=++-.+|+.. +...++|. .-||.||..|.-+|+-.|..
T Consensus 549 GTgnnkair~lL---h~aVsD~nDDVrRaAVialGFVl~~dp~~~------~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 549 GTGNNKAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFRDPEQL------PSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred ccCchhhHHHhh---cccccccchHHHHHHHHHheeeEecChhhc------hHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 3333333333 334689999999999999997766666655 55566665 57999999999999988865
Q ss_pred CCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhcc----CCCChHHHHHHHHHHhHhhcCCCh--HHHHHHHHH
Q psy2915 651 STSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNY----SPKDDREAQSICERITPRLAHANA--AVVLSAVKV 723 (883)
Q Consensus 651 ~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~----~~~~~~~~~~il~~l~~~l~~~~~--aV~~eai~~ 723 (883)
... +. ++.-|-....++..+.+--.+=.++.+ ++..-.....+.+.+.+.+.+.+. .+.|.|+-+
T Consensus 620 tG~-~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 620 TGL-KE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred CCc-HH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 321 11 222122222355556554433333332 122112233555666666655444 677776544
No 57
>KOG0212|consensus
Probab=98.41 E-value=0.00013 Score=80.83 Aligned_cols=352 Identities=18% Similarity=0.175 Sum_probs=211.4
Q ss_pred HHHhhcccchhHHHHHHHHHHhh-----ccCCchhhHhHHHHHHhhcC-CCCH-----HHHHHHHHHhcC-CChhhhhHH
Q psy2915 514 VVNCMQTDNLELKKLVYLYLMNY-----AKSHPDMAIMAVNTFVKDCE-DSNP-----LIRALAVRTMGC-IRVDKITEY 581 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~~~~~-----~~~~~~~~~l~~n~l~kdl~-~~n~-----~vr~~AL~~L~~-i~~~~~~~~ 581 (883)
+++.+.++-++-|+.+.+-+... .+.+.+-..-++..+.+|.. +++. ...++|+.++|- ..+....+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 44556555666666666665554 23334555556676666664 3443 233455554442 233347888
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchh-hH
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVA-LI 658 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~-~~ 658 (883)
++++|..++.|++..||.-|+.+++.+.+.....+. -+...+.+.++..|.|..|+.+|- ++-.+.+.-...+. -+
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhcccccccc
Confidence 999999999999999999999999999986544432 123456677777899999987664 44444433221111 11
Q ss_pred HhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCC
Q psy2915 659 EMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ----SICERITPRLAHANAAVVLSAVKVLMKLMEMLPGE 734 (883)
Q Consensus 659 ~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~ 734 (883)
+ .+..+.-+-..+...+|..+..+++-+..+....+.+.. .+++-+.+.+.+.+..|+--|=.++..+...+..+
T Consensus 164 s-L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 164 S-LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred C-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 1 112222333445567999999999988887655554443 45556667788999999987777777665333444
Q ss_pred hhh--HHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCchhHhhc----c-ceeEEccCCCH-HHHHHHH---HHH
Q psy2915 735 GDF--VSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHE----M-KVFFVKYNDPI-YVKLEKL---DIM 803 (883)
Q Consensus 735 ~~l--~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~----~-~~~~~l~~dd~-~Ir~~~l---~lL 803 (883)
|.. .++.++.+++ .+-+++|+++-.|+..+..+++..|+.+-.+ + .++-|+.+++. +|+-.+- ..+
T Consensus 243 P~s~d~~~~i~vlv~---~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVP---HLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred ccccCcccchhhccc---cccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 332 2333333443 5556899999999999999999987765443 3 34457776655 5554443 356
Q ss_pred HHhccccchhh------------------hhHHHHHHHHHHHHHHhhCCCch----HHHHHHHHhhcccCCcHHHHHHHH
Q psy2915 804 IRLASQANIAQ------------------VNYVVQEAIVVIKDIFRKYPNKY----ETIISTLCENLDTLDEPEARASMI 861 (883)
Q Consensus 804 ~~l~~~~N~~~------------------~~~~~~e~i~~i~~l~~~~p~~~----~~~i~~L~~~l~~i~~~~~~~~~~ 861 (883)
.+++++.--+. ...-.-+++.=|..|..+.|..- ..+-..|...+-+-. .+..--.+
T Consensus 320 ~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~~L 398 (675)
T KOG0212|consen 320 LKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLLAL 398 (675)
T ss_pred HHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCch-hHHHHHHH
Confidence 77776555442 11223335556677788888742 233333433333222 22333334
Q ss_pred HHHhcCcCcc
Q psy2915 862 WIIGEYAERI 871 (883)
Q Consensus 862 w~lgey~~~~ 871 (883)
.++.+-+..-
T Consensus 399 ~lla~i~~s~ 408 (675)
T KOG0212|consen 399 SLLASICSSS 408 (675)
T ss_pred HHHHHHhcCc
Confidence 5555544443
No 58
>KOG0212|consensus
Probab=98.37 E-value=0.00067 Score=75.28 Aligned_cols=342 Identities=18% Similarity=0.171 Sum_probs=214.5
Q ss_pred cchhhhchhcC-CCCH-----HHHHHHHHHhcc-CCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccc-
Q psy2915 116 SSVGVFVKDCE-DSNP-----LIRALAVRTMGC-IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE- 187 (883)
Q Consensus 116 ~~~~~l~kDL~-~~n~-----~vr~lALr~L~~-i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~- 187 (883)
+-|+++.+|.. +++. ...|+|.-++|- .......+.+.++|..|++|.+.-||-.|+.+++.+.+..-+.+.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~ 121 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV 121 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc
Confidence 33444666653 3333 456777776653 223346788889999999999999999999999999886544332
Q ss_pred -cccHHHHHHHHhcCCChhHHHHHHH---HHHhccccCCccc---cccccc-----cCCCCcHHHHHh------------
Q psy2915 188 -DQGFLDQLKDLLSDSNPMVVANAVA---AILLLPRKSYWQR---NLSSRK-----KQICWNLPYLMN------------ 243 (883)
Q Consensus 188 -~~~~~~~L~~lL~D~d~~V~~~a~~---~L~ei~~~~~~~~---~l~~~~-----~~~~w~q~~~l~------------ 243 (883)
.+...+.+.++-.|+|..|+++|=- .+.++.-.....+ .+++.+ ...+..+..++.
T Consensus 122 ~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~ 201 (675)
T KOG0212|consen 122 YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE 201 (675)
T ss_pred chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH
Confidence 2335567777888999999977642 2333332222111 122211 122333333333
Q ss_pred hccccccC------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhh-cCChhHHHHHHHHHHHHHh
Q psy2915 244 LSVIYPAW------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL-SSEPEVQYVALRNINLIVQ 314 (883)
Q Consensus 244 l~~~~~~~------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~vr~~aL~~l~~l~~ 314 (883)
+..|.|.- -+++.++.| -+=.++.++...+.+++... -....++.++.-+ ++++.++-.|+..+.++++
T Consensus 202 m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 202 MISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM--DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc--CcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 22333321 456777777 22223334433333221110 1123455555555 4678999999999999999
Q ss_pred hCchhHHhcc-----cceeeccCCCH-HHHHHHHH---HHHHhcChhhH------HHHHHHHHHhhhhcCHHHHHHHHHH
Q psy2915 315 KRPDILKHEM-----KVFFVKYNDPI-YVKLEKLD---IMIRLASQANI------AQVLSELKEYATEVDVDFVRKAVRA 379 (883)
Q Consensus 315 ~~~~~~~~~~-----~~~~~l~~~~~-~Ir~~aL~---iL~~l~~~~nv------~~Il~eL~~~~~~~d~~~r~~ai~a 379 (883)
..|..+-+++ .++.|+.+.+. ++|..|-. .|.+++++.-- +.|++-|..|+.+...+.|.++..-
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~W 359 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNW 359 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9987766552 56778888877 47666554 45666665443 3799999999999899999888888
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHH
Q psy2915 380 IGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPT-DTQELVQQVL 458 (883)
Q Consensus 380 I~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~-~~~~~l~~ll 458 (883)
|..+-.++|.. .+.....++..+.+.+.+.+++|-...|.-++.+.....+ ...+.+..++
T Consensus 360 i~~l~~~~p~q------------------l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL 421 (675)
T KOG0212|consen 360 IILLYHKAPGQ------------------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL 421 (675)
T ss_pred HHHHHhhCcch------------------hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 88877777642 2223344666667777888888888888888777654332 4566777777
Q ss_pred HHhhcCCCChhhhhhhHHHHH
Q psy2915 459 SLATQDSDNPDLRDRGFIYWR 479 (883)
Q Consensus 459 ~~~~~d~~~~evrdrA~~y~~ 479 (883)
++...+ ..-++.|+.+..+
T Consensus 422 ~~f~e~--~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 422 EMFKED--TKLLEVRGNLIIR 440 (675)
T ss_pred HHHhhh--hHHHHhhhhHHHH
Confidence 777775 3556666654443
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.37 E-value=1.6e-06 Score=75.49 Aligned_cols=86 Identities=30% Similarity=0.424 Sum_probs=70.4
Q ss_pred hhhhchhc-CCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHH
Q psy2915 118 VGVFVKDC-EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK 196 (883)
Q Consensus 118 ~~~l~kDL-~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~ 196 (883)
|+.+.+-+ +|+|+.+|..|+++||.++.++..+ .+.+.+.|++|.||..|+.+++++. ++..++.|.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIP----ALIELLKDEDPMVRRAAARALGRIG--------DPEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHH----HHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHH----HHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHHHHH
Confidence 34577888 9999999999999999999886665 4555679999999999999999773 345668888
Q ss_pred HHhcC-CChhHHHHHHHHHH
Q psy2915 197 DLLSD-SNPMVVANAVAAIL 215 (883)
Q Consensus 197 ~lL~D-~d~~V~~~a~~~L~ 215 (883)
+++.| ++..|+.+|+.+|.
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87765 67788999988874
No 60
>KOG1020|consensus
Probab=98.35 E-value=0.00067 Score=83.06 Aligned_cols=496 Identities=14% Similarity=0.161 Sum_probs=257.0
Q ss_pred chHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCC
Q psy2915 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSN 129 (883)
Q Consensus 50 ~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n 129 (883)
+...|+..+..+...+|--+-=.+++...-+|.++ ++- -|++- +-.-+.|+.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~-----------dvq~~--------------Vh~R~~Dss 868 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRP-----------DVQEA--------------VHGRLNDSS 868 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCH-----------HHHHH--------------HHHhhccch
Confidence 34444556666666666666556666655544331 111 01111 333588999
Q ss_pred HHHHHHHHHHhccC--CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHH
Q psy2915 130 PLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVV 207 (883)
Q Consensus 130 ~~vr~lALr~L~~i--~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~ 207 (883)
..||..|+.-+|.. ..|+.++..+..|.....|+.-.|||.|+.-+..++...|+...-+....++.+..+|+...|.
T Consensus 869 asVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~ 948 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIK 948 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHH
Confidence 99999999999975 4699999999999999999999999999999999999999886433333334444457777687
Q ss_pred HHHHHHHHhccccCCcc-c-------ccccc--------ccCCCCcHHHHHhhccccccCCC-CCCCchH-HHHHHHHHH
Q psy2915 208 ANAVAAILLLPRKSYWQ-R-------NLSSR--------KKQICWNLPYLMNLSVIYPAWPL-STINPHT-PLLKVLMKL 269 (883)
Q Consensus 208 ~~a~~~L~ei~~~~~~~-~-------~l~~~--------~~~~~w~q~~~l~l~~~~~~~~l-~~~n~~v-~~~~~l~~l 269 (883)
-=+...+.+++-..+.- . ..... ....+|.+-.++.+.+..-.... .+.++-. +.+...+.+
T Consensus 949 kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L 1028 (1692)
T KOG1020|consen 949 KLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNL 1028 (1692)
T ss_pred HHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHH
Confidence 77777777775433211 0 00000 01125777666552222110000 0111111 222222221
Q ss_pred hhcCCCChhhHHHHHHHHhHHHHHh-----hcCChhHHHHH-HHHHHHHHhhCchhHH-hccccee-eccCC-----CHH
Q psy2915 270 MEMLPGEGDFVSTLTKKLAPPLVTL-----LSSEPEVQYVA-LRNINLIVQKRPDILK-HEMKVFF-VKYND-----PIY 336 (883)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~L~~l-----L~~~~~vr~~a-L~~l~~l~~~~~~~~~-~~~~~~~-~l~~~-----~~~ 336 (883)
... .+...+... ...+.++|+.+ +..|..++...|.++. .|...+. -|... ...
T Consensus 1029 ~~~-------------cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~ 1095 (1692)
T KOG1020|consen 1029 LTH-------------CLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQ 1095 (1692)
T ss_pred HHH-------------HHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHH
Confidence 110 001111111 12445777765 6888889999999988 6754333 12222 111
Q ss_pred HHHHHHHHHHH----hcChh--hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHhH--
Q psy2915 337 VKLEKLDIMIR----LASQA--NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQ---SAERCVSTLLDLIQTK-- 405 (883)
Q Consensus 337 Ir~~aL~iL~~----l~~~~--nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~---~~~~~v~~Ll~lL~~~-- 405 (883)
+-...+.++=. +.+.+ =...+=+.|..-+...+.....+++.++|.++.|+-. ....|.....+.+...
T Consensus 1096 fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~ 1175 (1692)
T KOG1020|consen 1096 FLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKS 1175 (1692)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 11111111111 11111 1122222333333344556677888999999986433 3355666666655431
Q ss_pred --------------------------hhhhh---C-----------CHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhc
Q psy2915 406 --------------------------YAERI---D-----------NADELLESFLEGFHDENTQVQLQLLTAIVKLFLK 445 (883)
Q Consensus 406 --------------------------~~~~i---~-----------~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~ 445 (883)
|.+.- . ..+.++..+.---...+.++|..++.+++++...
T Consensus 1176 s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~ 1255 (1692)
T KOG1020|consen 1176 SNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQ 1255 (1692)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 11100 0 0111111111111334578999999999999988
Q ss_pred CCch-HHHHHHHHHHHhhcCCCChhhhhhh---HHHHHhh-cCCchhh---------hhhhhhHHHHHhhccCCCcccch
Q psy2915 446 RPTD-TQELVQQVLSLATQDSDNPDLRDRG---FIYWRLL-STGNTFY---------ILLHLTRLVIASMTVGKDVSALF 511 (883)
Q Consensus 446 ~~~~-~~~~l~~ll~~~~~d~~~~evrdrA---~~y~~ll-~~~~~~~---------~~~~~l~kli~~~~~g~~~~~~~ 511 (883)
.|+- .++.+..++.....+. +.++..+. ..++-.+ ..+.... ...+-++.+ .....|...+.+.
T Consensus 1256 hp~l~~~~~v~nly~~ila~~-n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem-~~v~sg~~s~~~~ 1333 (1692)
T KOG1020|consen 1256 HPSLFTSREVLNLYDEILADD-NSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEM-LDVSSGMGSSDGV 1333 (1692)
T ss_pred CchhhhhHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh-cccccccccccch
Confidence 8763 2333334444333332 23322221 1122221 1110000 000000000 0000111111111
Q ss_pred HHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhh--HHHHHHHHhh
Q psy2915 512 PDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKIT--EYLCEPLRKC 589 (883)
Q Consensus 512 ~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~--~~l~~~l~~~ 589 (883)
.. ++-+-...+..-+-+.+.-+|..|++.+.-+-...+. -..+|.+..+
T Consensus 1334 ~~-----------------------------i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL 1384 (1692)
T KOG1020|consen 1334 SA-----------------------------IMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIAL 1384 (1692)
T ss_pred HH-----------------------------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheee
Confidence 11 1122223344445577788999999988754332222 2355777777
Q ss_pred cCCCChHHHhhHHHHHHHHHhhcccccc
Q psy2915 590 LKDEDPYVRKTAAVCVAKLYDINAQLVE 617 (883)
Q Consensus 590 l~d~~~~VRk~A~~al~~l~~~~~~~~~ 617 (883)
-.|+.++.|..|-.-+-.+.++++..+.
T Consensus 1385 ~Tdp~~~~r~~Ad~LL~eid~kY~gfv~ 1412 (1692)
T KOG1020|consen 1385 ETDPSQAIRHVADELLKEIDEKYEGFVF 1412 (1692)
T ss_pred cCChHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8899999999999999999998887764
No 61
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.34 E-value=2e-06 Score=74.89 Aligned_cols=85 Identities=32% Similarity=0.445 Sum_probs=68.5
Q ss_pred HHHHhhc-CCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHH
Q psy2915 549 NTFVKDC-EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKD 627 (883)
Q Consensus 549 n~l~kdl-~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~ 627 (883)
+.+.+.+ +++++.+|..|+++||.+++++.. +.+.++++|++|.||..|+.+++++- +++.++.|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAI----PALIELLKDEDPMVRRAAARALGRIG--------DPEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHH----HHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHH----HHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHHHHHH
Confidence 4566667 899999999999999999988654 45677789999999999999999772 2345588888
Q ss_pred hhcC-CChhHHHHHHHHHH
Q psy2915 628 LLSD-SNPMVVANAVAALS 645 (883)
Q Consensus 628 lL~D-~d~~V~~~a~~~l~ 645 (883)
++.| ++..|+.+|+.+|.
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 8875 67778999988774
No 62
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.25 E-value=0.00014 Score=80.62 Aligned_cols=246 Identities=22% Similarity=0.260 Sum_probs=165.1
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhH
Q psy2915 416 LLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTR 495 (883)
Q Consensus 416 il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~ 495 (883)
....+.+.+.+++..+|......++.+ ...+.++.+...+.+. ++.+|..|.+.+.-++.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~------~~~~av~~l~~~l~d~--~~~vr~~a~~aLg~~~~------------ 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGEL------GSEEAVPLLRELLSDE--DPRVRDAAADALGELGD------------ 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhh------chHHHHHHHHHHhcCC--CHHHHHHHHHHHHccCC------------
Confidence 344455556666888888888887665 3445566666655554 67888877753322221
Q ss_pred HHHHhhccCCCcccchHHHHHhhc-ccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCC----------H--HH
Q psy2915 496 LVIASMTVGKDVSALFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSN----------P--LI 562 (883)
Q Consensus 496 kli~~~~~g~~~~~~~~~vi~ll~-s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n----------~--~v 562 (883)
......+++.+. +.+..+|+.+..+++.+.... .+..+...+++++ + .+
T Consensus 104 ------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~------a~~~l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 104 ------------PEAVPPLVELLENDENEGVRAAAARALGKLGDER------ALDPLLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred ------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh------hhHHHHHHhccchhhhhhhhccchHHHH
Confidence 233555667676 578888888888888877654 2344455555544 2 68
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHH
Q psy2915 563 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVA 642 (883)
Q Consensus 563 r~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~ 642 (883)
|..|+..++.+++++..+. ++..+.|+...||++|+.+++++.... ....+.+...+.|.+..|+..++.
T Consensus 166 r~~a~~~l~~~~~~~~~~~----l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~ 235 (335)
T COG1413 166 RAAAAEALGELGDPEAIPL----LIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALL 235 (335)
T ss_pred HHHHHHHHHHcCChhhhHH----HHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999887774 667788999999999999999885433 134588889999999999999999
Q ss_pred HHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHH
Q psy2915 643 ALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVK 722 (883)
Q Consensus 643 ~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~ 722 (883)
.+.++... .....+...+.+.++-.....-..+..+.. ......+...+.+.+..+.+++..
T Consensus 236 ~l~~~~~~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~ 297 (335)
T COG1413 236 ALGEIGDE------------EAVDALAKALEDEDVILALLAAAALGALDL------AEAALPLLLLLIDEANAVRLEAAL 297 (335)
T ss_pred HhcccCcc------------hhHHHHHHHHhccchHHHHHHHHHhcccCc------hhhHHHHHHHhhcchhhHHHHHHH
Confidence 99999754 344455554443333222222222221111 122445556677888899999998
Q ss_pred HHHHh
Q psy2915 723 VLMKL 727 (883)
Q Consensus 723 ~i~~~ 727 (883)
.+..+
T Consensus 298 ~l~~~ 302 (335)
T COG1413 298 ALGQI 302 (335)
T ss_pred HHHhh
Confidence 88777
No 63
>KOG0915|consensus
Probab=98.21 E-value=0.043 Score=68.07 Aligned_cols=445 Identities=16% Similarity=0.172 Sum_probs=246.0
Q ss_pred hchhcCCCCHHHHHHH-------HHHhccCCc-hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHH
Q psy2915 121 FVKDCEDSNPLIRALA-------VRTMGCIRV-DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFL 192 (883)
Q Consensus 121 l~kDL~~~n~~vr~lA-------Lr~L~~i~~-~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~ 192 (883)
+-+-+.|+||..|..+ ++.+|.... ......+.......|+|.+.++.--|+.+++=+|...-+... ..++
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k-~~LV 901 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK-KSLV 901 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH-HHHH
Confidence 5566789999999765 344454332 123344556677788999999999999999888865443332 1222
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCC-CCCc-hHHHHHHHHHHh
Q psy2915 193 DQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLS-TINP-HTPLLKVLMKLM 270 (883)
Q Consensus 193 ~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~-~~n~-~v~~~~~l~~l~ 270 (883)
+.|.+-|.... +. -+++..+. +++. +. .+. ..+- .+.+.+-++.++
T Consensus 902 ~sL~~tl~~Gk---r~-----~~~vs~eT----elFq-------------------~G-~Lg~Tp~Gg~isTYKELc~LA 949 (1702)
T KOG0915|consen 902 DSLVNTLTGGK---RK-----AIKVSEET----ELFQ-------------------EG-TLGKTPDGGKISTYKELCNLA 949 (1702)
T ss_pred HHHHHHHhccc---cc-----cceeccch----hccc-------------------CC-cCCCCCCCCcchHHHHHHHHH
Confidence 22222111100 00 00110000 0110 00 111 1111 236777788777
Q ss_pred hcCCCChhhHHHHHHHHhHHHHHhhcCCh--hHHHHHHHHHHHHHhhCchhHHhcc-----cceeeccCCCHHHHHHHHH
Q psy2915 271 EMLPGEGDFVSTLTKKLAPPLVTLLSSEP--EVQYVALRNINLIVQKRPDILKHEM-----KVFFVKYNDPIYVKLEKLD 343 (883)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~vr~~aL~~l~~l~~~~~~~~~~~~-----~~~~~l~~~~~~Ir~~aL~ 343 (883)
+.++.. . ++-.++.+-+.+. |-|.-|.--++.|+....+-+.||+ +.+.-.+||+.-|+..-.+
T Consensus 950 Sdl~qP-----d----LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~s 1020 (1702)
T KOG0915|consen 950 SDLGQP-----D----LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTS 1020 (1702)
T ss_pred hhcCCh-----H----HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHH
Confidence 766542 1 3334555443332 6777777778888888888888874 3344678999999999999
Q ss_pred HHHHhcCh-hhH-----HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHH
Q psy2915 344 IMIRLASQ-ANI-----AQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELL 417 (883)
Q Consensus 344 iL~~l~~~-~nv-----~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il 417 (883)
|=-.++++ +++ .+|++||...+++..+-+|..+..|+..+-...|. +...+-+.+ +.
T Consensus 1021 IW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~lpe---------------lw 1083 (1702)
T KOG0915|consen 1021 IWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEKLPE---------------LW 1083 (1702)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHH---------------HH
Confidence 99888876 554 55888888888888899999999999888765432 222222222 22
Q ss_pred HHHhhhhcCCCHHHHHH---HHHHHHHHhhcC-----CchHHHHHHHHHH----HhhcCCCChhhhhhhHHHHHhhcCCc
Q psy2915 418 ESFLEGFHDENTQVQLQ---LLTAIVKLFLKR-----PTDTQELVQQVLS----LATQDSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 418 ~~l~~~~~~~~~~vr~~---~L~al~Kl~~~~-----~~~~~~~l~~ll~----~~~~d~~~~evrdrA~~y~~ll~~~~ 485 (883)
..+-....|-...||.+ +.++++|+..+. +...++.+..++. ....+ .-++||.-+.
T Consensus 1084 ~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims-~v~evr~~si---------- 1152 (1702)
T KOG0915|consen 1084 EAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMS-KVNEVRRFSI---------- 1152 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCccc-chHHHHHHHH----------
Confidence 22222222223344443 356677776542 1233444444443 33332 3566664332
Q ss_pred hhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcc--cchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHH
Q psy2915 486 TFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQT--DNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIR 563 (883)
Q Consensus 486 ~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s--~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr 563 (883)
..+.++... .|..+-+.++..+.++-. +..+-..+-|+++..+ ....-++.+.+....-+.|+.
T Consensus 1153 ------~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~-----~~e~ealDt~R~s~aksspmm- 1218 (1702)
T KOG0915|consen 1153 ------GTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLI-----NIETEALDTLRASAAKSSPMM- 1218 (1702)
T ss_pred ------HHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHHHhhh-----hhHHHHHHHHHHhhhcCCcHH-
Confidence 111111111 233445555555543221 2233334566666552 112335566666666666654
Q ss_pred HHHHHHhcCCChhhhhHHHHHHHHhhcCCCChH-HHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHH
Q psy2915 564 ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPY-VRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANA 640 (883)
Q Consensus 564 ~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~-VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D~d~~V~~~a 640 (883)
.++.-+-+..+-++.+.++|.|.+++..+.-- -|-.++.-+.-+....+....+ ..++..+-..+.|.++.|+.+-
T Consensus 1219 -eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1219 -ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHH
Confidence 34444445677778888888888888654221 2223333333344455555432 1233344445579999999999
Q ss_pred HHHHHHHHhc
Q psy2915 641 VAALSEMNEA 650 (883)
Q Consensus 641 ~~~l~~i~~~ 650 (883)
..+++.+.+-
T Consensus 1298 AsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1298 ASAMGYLAKF 1307 (1702)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 64
>KOG1943|consensus
Probab=98.20 E-value=0.0031 Score=75.26 Aligned_cols=515 Identities=16% Similarity=0.153 Sum_probs=241.3
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcC-CChhHHHHHHHHHHhccccCCc
Q psy2915 145 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSD-SNPMVVANAVAAILLLPRKSYW 223 (883)
Q Consensus 145 ~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D-~d~~V~~~a~~~L~ei~~~~~~ 223 (883)
.|+++|.++..+..+++|.+..||-.||.+++|+....|-.+-|. .+..+..+++- ++++.-+.|+.+|.|++...-.
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 478899999999999999999999999999999999888544332 33334444542 4688888999999999865411
Q ss_pred cccccccccCCCCcHHHHHhhccccccCCCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHH--hhcCCh
Q psy2915 224 QRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVT--LLSSEP 299 (883)
Q Consensus 224 ~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~--lL~~~~ 299 (883)
...++. -.-..+++-+.|--...-.+....| +++-.+-.+...-+++ ++.+ ++..+...|+. +.+.+-
T Consensus 414 lps~l~------dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l~p-~l~~L~s~LL~~AlFDrev 485 (1133)
T KOG1943|consen 414 LPSLLE------DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DLKP-VLQSLASALLIVALFDREV 485 (1133)
T ss_pred chHHHH------HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh-hhhH-HHHHHHHHHHHHHhcCchh
Confidence 110000 0001111211111100001222234 3333333343332222 1111 33333333332 124566
Q ss_pred hHHHHHHHHHHHHHhhCchhHHhc-ccceeeccCCCHHHHHH---HHHHHHHhcChh-hHHHHHHHHHHh-hhhcCHHHH
Q psy2915 300 EVQYVALRNINLIVQKRPDILKHE-MKVFFVKYNDPIYVKLE---KLDIMIRLASQA-NIAQVLSELKEY-ATEVDVDFV 373 (883)
Q Consensus 300 ~vr~~aL~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~Ir~~---aL~iL~~l~~~~-nv~~Il~eL~~~-~~~~d~~~r 373 (883)
|.|++|-.++.+.+-+.++. || +.+. ..-|..++..+ =+++-..++.-+ =.+.++++|..- +-.=|+.+|
T Consensus 486 ncRRAAsAAlqE~VGR~~n~--p~Gi~Li--s~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 486 NCRRAASAALQENVGRQGNF--PHGISLI--STIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred hHhHHHHHHHHHHhccCCCC--CCchhhh--hhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHH
Confidence 99999999998887766544 11 0000 00011111111 111111121111 123344444422 223367788
Q ss_pred HHHHHHHHHHHhhchhhHH-HHHHHHHHHHHhHhhh----hhCCHHHHHHHHhhhh--cCCCHHHHHHH----HHHHHHH
Q psy2915 374 RKAVRAIGRCAIKVEQSAE-RCVSTLLDLIQTKYAE----RIDNADELLESFLEGF--HDENTQVQLQL----LTAIVKL 442 (883)
Q Consensus 374 ~~ai~aI~~la~k~~~~~~-~~v~~Ll~lL~~~~~~----~i~~~~~il~~l~~~~--~~~~~~vr~~~----L~al~Kl 442 (883)
.-+..++..++...|+... -++.-+++-....-+. ..-.+.+++..+-... .....+.+.+. +..+..-
T Consensus 562 elaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~ 641 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR 641 (1133)
T ss_pred HHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH
Confidence 8888888888887776432 3333333321111000 0000112221111100 11111222222 1111111
Q ss_pred hhcCC--chHHHHHHHHHHHhhcCCCChhhhhhhHH-HHHhhcCCc--hh---hhhhhhhHHHHHhhccCCCcc--cchH
Q psy2915 443 FLKRP--TDTQELVQQVLSLATQDSDNPDLRDRGFI-YWRLLSTGN--TF---YILLHLTRLVIASMTVGKDVS--ALFP 512 (883)
Q Consensus 443 ~~~~~--~~~~~~l~~ll~~~~~d~~~~evrdrA~~-y~~ll~~~~--~~---~~~~~~l~kli~~~~~g~~~~--~~~~ 512 (883)
+..+. .-+...+-..++.+... ...-.++-..+ |+.++.... .. .....++..+......+.+.. ....
T Consensus 642 ~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~~d~~~~~~li~ 720 (1133)
T KOG1943|consen 642 YFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVKADEGEEAPLIT 720 (1133)
T ss_pred HhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCchhhhHHHH
Confidence 11111 11223333333333322 12323344443 444443222 11 112233333333333332221 2233
Q ss_pred HHHHhhccc-chhHHHHHHHHHHhhccCC--chhhHhHHHHHHhhcCCC-CHHHHHHHHHHhcCCC-------hhhhhHH
Q psy2915 513 DVVNCMQTD-NLELKKLVYLYLMNYAKSH--PDMAIMAVNTFVKDCEDS-NPLIRALAVRTMGCIR-------VDKITEY 581 (883)
Q Consensus 513 ~vi~ll~s~-~~~~kr~~yl~~~~~~~~~--~~~~~l~~n~l~kdl~~~-n~~vr~~AL~~L~~i~-------~~~~~~~ 581 (883)
..+.-+.+. +..+++..+++++.+..+. -.....+.+.+..-.-+. .+.-|..++.++..+. -.+..+.
T Consensus 721 ~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k 800 (1133)
T KOG1943|consen 721 RYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEK 800 (1133)
T ss_pred HHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 344444443 5667777777777764221 111112344444433333 5677877777777542 2344555
Q ss_pred HHHHHHhhcC----C----CChHHHhhHHHHHHHHHhhc--ccccccccHHHHHHH-hhc---CCChhHHHHHHHHHHHH
Q psy2915 582 LCEPLRKCLK----D----EDPYVRKTAAVCVAKLYDIN--AQLVEDQGFLDQLKD-LLS---DSNPMVVANAVAALSEM 647 (883)
Q Consensus 582 l~~~l~~~l~----d----~~~~VRk~A~~al~~l~~~~--~~~~~~~~~~~~l~~-lL~---D~d~~V~~~a~~~l~~i 647 (883)
+...+.+++. | -...||++|..++..+--.. |+.+. ++.+..+.. +++ |+=...|..|+.++..+
T Consensus 801 ~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld-~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 801 FRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLD-EDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCccccc-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 6666667664 2 34669999999998876543 44443 333333332 443 33334488888888888
Q ss_pred HhcCCCchhhHHhcHHHHHHHHHHcc---cCChhh
Q psy2915 648 NEASTSGVALIEMNAQTINKLLTALN---ECTEWG 679 (883)
Q Consensus 648 ~~~~~~~~~~~~l~~~~~~~L~~~l~---~~~~w~ 679 (883)
...+|.- ..+ +...+|.+..+ ...||.
T Consensus 880 ~~~~~~i----~~~-~~~~~L~ei~~~~~a~~~~~ 909 (1133)
T KOG1943|consen 880 VVHSPSI----PHF-RHIEKLEEIFPRDYANVPWA 909 (1133)
T ss_pred eecCCCC----Ccc-hHHHHHHhhcCcccccCCCc
Confidence 7653321 111 45566666665 345664
No 65
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.19 E-value=0.00065 Score=75.29 Aligned_cols=254 Identities=19% Similarity=0.229 Sum_probs=146.5
Q ss_pred ccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhh
Q psy2915 330 KYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAER 409 (883)
Q Consensus 330 l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~ 409 (883)
+.+++..+|..+...+..+.++. .++.|.+.+.+.++.+|..++.++|.+. .+..++.+++++.+
T Consensus 52 l~~~~~~vr~~aa~~l~~~~~~~----av~~l~~~l~d~~~~vr~~a~~aLg~~~------~~~a~~~li~~l~~----- 116 (335)
T COG1413 52 LEDEDLLVRLSAAVALGELGSEE----AVPLLRELLSDEDPRVRDAAADALGELG------DPEAVPPLVELLEN----- 116 (335)
T ss_pred HcCCCHHHHHHHHHHHhhhchHH----HHHHHHHHhcCCCHHHHHHHHHHHHccC------ChhHHHHHHHHHHc-----
Confidence 44556677777777777666554 4455555666677788888888777655 23334444443332
Q ss_pred hCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhh
Q psy2915 410 IDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYI 489 (883)
Q Consensus 410 i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~ 489 (883)
+++..||.....+++++.. ...+..++.....+ +..+ .+..+ ......
T Consensus 117 ----------------d~~~~vR~~aa~aL~~~~~------~~a~~~l~~~l~~~--~~~~--a~~~~------~~~~~~ 164 (335)
T COG1413 117 ----------------DENEGVRAAAARALGKLGD------ERALDPLLEALQDE--DSGS--AAAAL------DAALLD 164 (335)
T ss_pred ----------------CCcHhHHHHHHHHHHhcCc------hhhhHHHHHHhccc--hhhh--hhhhc------cchHHH
Confidence 5778888888888888732 22355555544443 1111 00100 000000
Q ss_pred hhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHH
Q psy2915 490 LLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRT 569 (883)
Q Consensus 490 ~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~ 569 (883)
.+...-..+.. . ..........+.+.+.+..+|+....+++..+... .-+...+.+.+++++..+|..++..
T Consensus 165 ~r~~a~~~l~~--~--~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~ 236 (335)
T COG1413 165 VRAAAAEALGE--L--GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLA 236 (335)
T ss_pred HHHHHHHHHHH--c--CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00000011111 1 12334455566666666677777777777766654 2234556677778888888888888
Q ss_pred hcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 570 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 570 L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
+|.++..+.... +...+.+.++.+|..+..+.... ........+...+.|.+..++..+..++..+..
T Consensus 237 l~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 237 LGEIGDEEAVDA----LAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hcccCcchhHHH----HHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 888877766664 44456777777777777666511 111233555666777888888888888877775
Q ss_pred c
Q psy2915 650 A 650 (883)
Q Consensus 650 ~ 650 (883)
.
T Consensus 305 ~ 305 (335)
T COG1413 305 E 305 (335)
T ss_pred c
Confidence 3
No 66
>KOG0915|consensus
Probab=98.18 E-value=0.0026 Score=78.16 Aligned_cols=323 Identities=13% Similarity=0.183 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchHH----HHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhh
Q psy2915 426 DENTQVQLQLLTAIVKLFLKRPTDTQ----ELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASM 501 (883)
Q Consensus 426 ~~~~~vr~~~L~al~Kl~~~~~~~~~----~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~ 501 (883)
.-.+.-|..+.--++++......+.+ .+++++.+ ..+|. ++.||+.-.-.|..+-.++... +.+-.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyR-Y~yDP-~~~Vq~aM~sIW~~Li~D~k~~-----vd~y~--- 1037 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYR-YQYDP-DKKVQDAMTSIWNALITDSKKV-----VDEYL--- 1037 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhh-hccCC-cHHHHHHHHHHHHHhccChHHH-----HHHHH---
Confidence 33455555443333443333222344 44444444 45564 7888888888888887775321 11100
Q ss_pred ccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCch-----hhHhHHHHHHhhcCCCCHHHHHHH---HHHhcCC
Q psy2915 502 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD-----MAIMAVNTFVKDCEDSNPLIRALA---VRTMGCI 573 (883)
Q Consensus 502 ~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~-----~~~l~~n~l~kdl~~~n~~vr~~A---L~~L~~i 573 (883)
-..+.+.+..+.++.|.+|-.+.+++..+.+..|. ...-.--++.+-+.|--+-||-+| .++++++
T Consensus 1038 ------neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1038 ------NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred ------HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233445667888999999999999888655331 111112222333334445666554 4555543
Q ss_pred -----------ChhhhhHHHHHHHHh-hcCCCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHH
Q psy2915 574 -----------RVDKITEYLCEPLRK-CLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVAN 639 (883)
Q Consensus 574 -----------~~~~~~~~l~~~l~~-~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D~d~~V~~~ 639 (883)
...+....++|.+.. .+-++.+.||+-++-.+.++.+.++..+.. +++++.|.+....-+|.|..-
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH
Confidence 335677777787643 444889999999999999999988877652 345555555556666666432
Q ss_pred HHHHHHHHH------------hcCCCchhhHHhcHHHHHHHHHHcc-------------------------cCChhhHHH
Q psy2915 640 AVAALSEMN------------EASTSGVALIEMNAQTINKLLTALN-------------------------ECTEWGQVF 682 (883)
Q Consensus 640 a~~~l~~i~------------~~~~~~~~~~~l~~~~~~~L~~~l~-------------------------~~~~w~qi~ 682 (883)
...-+..+- +..| .| ..+.++++.++ .++.+....
T Consensus 1192 ls~r~~~~e~ealDt~R~s~akssp----mm----eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L 1263 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSSP----MM----ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLL 1263 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCCc----HH----HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHH
Confidence 222112221 1111 11 12222222221 024444444
Q ss_pred HHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHH
Q psy2915 683 ILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYV 762 (883)
Q Consensus 683 iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~ 762 (883)
..|+.....|-.. +++..+.+..++.|++|+...+.+++++..+..+ .++.+-+-..+-.++.+.+..+-+
T Consensus 1264 ~~r~~~emtP~sg----Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~-----dq~qKLie~~l~~~l~k~es~~si 1334 (1702)
T KOG0915|consen 1264 VQRLGSEMTPYSG----KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP-----DQMQKLIETLLADLLGKDESLKSI 1334 (1702)
T ss_pred HHHhccccCcchh----HHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHhccCCCccch
Confidence 5554444555444 8899999999999999999999999999643322 233332222222334444434456
Q ss_pred HHHHHHHHHhhCchhHhhc
Q psy2915 763 ALRNINLIVQKRPDILKHE 781 (883)
Q Consensus 763 aL~~l~~l~~~~~~~~~~~ 781 (883)
+...+..|+...++.+.+|
T Consensus 1335 scatis~Ian~s~e~Lkn~ 1353 (1702)
T KOG0915|consen 1335 SCATISNIANYSQEMLKNY 1353 (1702)
T ss_pred hHHHHHHHHHhhHHHHHhh
Confidence 6666665777777777665
No 67
>KOG4224|consensus
Probab=98.16 E-value=0.00032 Score=73.65 Aligned_cols=185 Identities=18% Similarity=0.212 Sum_probs=118.2
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchh--------hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhC--cccc
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDK--------ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQLV 186 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~--------~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~--p~~~ 186 (883)
|++.+..-+++.|+.+|--+-.++++|+... .-+.+++.+..++.|+++.|+-.|.+|+..+.... .--+
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ei 288 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREI 288 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHH
Confidence 6777888999999999999999999997643 23557888899999999999999999998775311 1111
Q ss_pred ccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHH
Q psy2915 187 EDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVL 266 (883)
Q Consensus 187 ~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l 266 (883)
...+-+|.+.++|+++---...+.+..+.-+.-+ |... ..
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe---------------------------------~l------ 328 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNE---------------------------------VL------ 328 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcc---------------------------------cc------
Confidence 1344557777777655433333333334333211 1000 00
Q ss_pred HHHhhcCCCChhhHHHHHHHHhHHHHHhhc-C-ChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHH
Q psy2915 267 MKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-S-EPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDI 344 (883)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~-~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~i 344 (883)
+ .=.....||+++|+ . +.+++.+|.+.+..++..+..-.. .+
T Consensus 329 ------I---------~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~----~i----------------- 372 (550)
T KOG4224|consen 329 ------I---------ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVS----VI----------------- 372 (550)
T ss_pred ------e---------ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhH----HH-----------------
Confidence 0 00124567888885 3 446999999999888774321100 00
Q ss_pred HHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHh
Q psy2915 345 MIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAI 385 (883)
Q Consensus 345 L~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~ 385 (883)
-++ .-++.|...+.|.+.+|+.+.--+|++++-
T Consensus 373 -----~es---gAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 373 -----RES---GAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred -----hhc---CchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 000 125566667778888999999999988874
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.14 E-value=0.00038 Score=78.06 Aligned_cols=241 Identities=13% Similarity=0.068 Sum_probs=146.1
Q ss_pred chHHHHHhhc-ccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHh
Q psy2915 510 LFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRK 588 (883)
Q Consensus 510 ~~~~vi~ll~-s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~ 588 (883)
....++..+. +.+......+-+++... ..+. ++..+.+-+.|+++.+|..|.++||.++.+...+. +..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~ 124 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--EDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEP 124 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHH
Confidence 3444566664 34444444333333322 2222 46788888999999999999999999999887765 556
Q ss_pred hcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHH
Q psy2915 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKL 668 (883)
Q Consensus 589 ~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L 668 (883)
.+.|++|.||..++.+++.. .++. .+.+..+|+|.|+.|+.+|+.+++++... .....|
T Consensus 125 ~L~~~~p~vR~aal~al~~r---~~~~------~~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L 183 (410)
T TIGR02270 125 LLAASEPPGRAIGLAALGAH---RHDP------GPALEAALTHEDALVRAAALRALGELPRR------------LSESTL 183 (410)
T ss_pred HhcCCChHHHHHHHHHHHhh---ccCh------HHHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHH
Confidence 67999999999999777642 2222 26788899999999999999999999853 222234
Q ss_pred HHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhH
Q psy2915 669 LTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPP 748 (883)
Q Consensus 669 ~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~ 748 (883)
...+.+.++-.+.-.+..+..++.. .-.+.+.......+..+...+...+ .+ .+. + .+...
T Consensus 184 ~~al~d~~~~VR~aA~~al~~lG~~------~A~~~l~~~~~~~g~~~~~~l~~~l-al----~~~----~----~a~~~ 244 (410)
T TIGR02270 184 RLYLRDSDPEVRFAALEAGLLAGSR------LAWGVCRRFQVLEGGPHRQRLLVLL-AV----AGG----P----DAQAW 244 (410)
T ss_pred HHHHcCCCHHHHHHHHHHHHHcCCH------hHHHHHHHHHhccCccHHHHHHHHH-Hh----CCc----h----hHHHH
Confidence 4556667777777777777666542 1233444333334443333222222 22 122 1 12333
Q ss_pred HHHhccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhcc
Q psy2915 749 LVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLAS 808 (883)
Q Consensus 749 L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~ 808 (883)
|..++. ++++|..++..+.++.. |..+..-+. ..+|+ .+++.+-+.+-+++.
T Consensus 245 L~~ll~-d~~vr~~a~~AlG~lg~--p~av~~L~~----~l~d~-~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 245 LRELLQ-AAATRREALRAVGLVGD--VEAAPWCLE----AMREP-PWARLAGEAFSLITG 296 (410)
T ss_pred HHHHhc-ChhhHHHHHHHHHHcCC--cchHHHHHH----HhcCc-HHHHHHHHHHHHhhC
Confidence 334443 35578877777776553 333322122 22333 388888887777664
No 69
>KOG2259|consensus
Probab=98.11 E-value=0.0012 Score=74.54 Aligned_cols=175 Identities=19% Similarity=0.112 Sum_probs=110.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHH
Q psy2915 624 QLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICE 703 (883)
Q Consensus 624 ~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~ 703 (883)
.+..-|+|+=.+||.+|+..++.+...+|+. ....+..|...+++-.+-.+.+.+..|..+... -.--.+.++
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~ 449 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPGF------AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLR 449 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHH
Confidence 3444567888899999999999999887743 346677778777766666666666666665432 111125577
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCchhHhhc--
Q psy2915 704 RITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHE-- 781 (883)
Q Consensus 704 ~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~-- 781 (883)
.+...+.+.+.-|+ |+++-+...+.+.+ .+++..++..|+.-+...|.=|=-.+..+..+.+.|+.++...
T Consensus 450 ~il~~L~D~s~dvR-e~l~elL~~~~~~d------~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~ 522 (823)
T KOG2259|consen 450 QILESLEDRSVDVR-EALRELLKNARVSD------LECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLSNMG 522 (823)
T ss_pred HHHHHHHhcCHHHH-HHHHHHHHhcCCCc------HHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhHHHHHH
Confidence 88888888888887 55555555542222 2345555554444455555555566888999999998875431
Q ss_pred ----c-cee---EEccCCCHHHHHHHHHHHHHhccccch
Q psy2915 782 ----M-KVF---FVKYNDPIYVKLEKLDIMIRLASQANI 812 (883)
Q Consensus 782 ----~-~~~---~~l~~dd~~Ir~~~l~lL~~l~~~~N~ 812 (883)
. ..| .--.+|..|+-+..+-+=....+..-+
T Consensus 523 rfl~kh~~f~t~e~s~ed~~y~akLilv~nAa~~~p~ii 561 (823)
T KOG2259|consen 523 RFLEKHTSFATIEPSLEDGFYIAKLILVRNAARADPGII 561 (823)
T ss_pred HHHHhcccccccCccccChhhhhhhhhhhhhhhhCCCee
Confidence 1 112 223456778777666554444444443
No 70
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.09 E-value=1.2e-05 Score=80.24 Aligned_cols=91 Identities=33% Similarity=0.452 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHhcc--CCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhH
Q psy2915 129 NPLIRALAVRTMGC--IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMV 206 (883)
Q Consensus 129 n~~vr~lALr~L~~--i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 206 (883)
||.+|+.|+.++|. ++.|.+++...+.+.++|.|++|.||+.|+.++.++...+.-.+.. .++..+-.++.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 68899999999994 5779999999999999999999999999999999999877666643 34355667889999999
Q ss_pred HHHHHHHHHhcccc
Q psy2915 207 VANAVAAILLLPRK 220 (883)
Q Consensus 207 ~~~a~~~L~ei~~~ 220 (883)
+..|...+.++...
T Consensus 80 r~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 80 RSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 71
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.029 Score=62.75 Aligned_cols=287 Identities=12% Similarity=0.125 Sum_probs=156.7
Q ss_pred hhcCCCCHHHHHHHHHHhcCCChhh-----------------------hhHHHHHHHHhhcC-------CCChHHHhhHH
Q psy2915 553 KDCEDSNPLIRALAVRTMGCIRVDK-----------------------ITEYLCEPLRKCLK-------DEDPYVRKTAA 602 (883)
Q Consensus 553 kdl~~~n~~vr~~AL~~L~~i~~~~-----------------------~~~~l~~~l~~~l~-------d~~~~VRk~A~ 602 (883)
+-++++|+.|...|+..-+.+..+| -+..++|.+.++|. +.+|.+-++|.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 4566777777777777665432221 13447788888883 35788988888
Q ss_pred HHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHH
Q psy2915 603 VCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVF 682 (883)
Q Consensus 603 ~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~ 682 (883)
-|+--+.+.-.+.+-.+ ...-+.+-+..++..=|.+|+.+++.+-.. |.-.-.-.++|..+..+.+...+..-|..-.
T Consensus 350 sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~qalp~i~n~m~D~~l~vk~t 427 (858)
T COG5215 350 SCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQALPGIENEMSDSCLWVKST 427 (858)
T ss_pred HHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence 88865555444443322 445566677788899999999999999754 4332333466667777777666666666655
Q ss_pred HHHHHhccCCCChHHH---HHHHHHHhHhhc--CCChHHHHHHHHHHHHhhhhCCCC----hhhHHHHHHHhhhHHHHh-
Q psy2915 683 ILDSLSNYSPKDDREA---QSICERITPRLA--HANAAVVLSAVKVLMKLMEMLPGE----GDFVSTLTKKLAPPLVTL- 752 (883)
Q Consensus 683 iL~lL~~~~~~~~~~~---~~il~~l~~~l~--~~~~aV~~eai~~i~~~~~~~~~~----~~l~~~~~~~~~~~L~~l- 752 (883)
.--.++.+...-+... ..+...+..++. .-++-+...|...+..+..++++- +.++......+...|+.-
T Consensus 428 tAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t 507 (858)
T COG5215 428 TAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGT 507 (858)
T ss_pred HHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHH
Confidence 4444444331100000 001111111111 123445555666655554433321 222222223344444432
Q ss_pred --ccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCC--CHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHH
Q psy2915 753 --LSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYND--PIYVKLEKLDIMIRLASQANIAQVNYVVQEAIVVIKD 828 (883)
Q Consensus 753 --l~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~d--d~~Ir~~~l~lL~~l~~~~N~~~~~~~~~e~i~~i~~ 828 (883)
..++.|.|-.+.+.|..++...|+.+.+-...|+....+ +..|.- +.-++.+-+..| .+.+....+..+..
T Consensus 508 ~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv--~~q~l~~eD~~~---~~elqSN~~~vl~a 582 (858)
T COG5215 508 ELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISV--LGQILATEDQLL---VEELQSNYIGVLEA 582 (858)
T ss_pred HhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHH---HHHHHHHHHHHHHH
Confidence 235788999999999999998898877654333211110 111111 111122223333 23555566778888
Q ss_pred HHhhCCCchHHHHHHHHh
Q psy2915 829 IFRKYPNKYETIISTLCE 846 (883)
Q Consensus 829 l~~~~p~~~~~~i~~L~~ 846 (883)
+++++|...++.-..|.+
T Consensus 583 iir~~~~~ie~v~D~lm~ 600 (858)
T COG5215 583 IIRTRRRDIEDVEDQLME 600 (858)
T ss_pred HHHhcCCCcccHHHHHHH
Confidence 888887754444443333
No 72
>KOG1248|consensus
Probab=97.99 E-value=0.095 Score=63.84 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=139.7
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh----cCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL----SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTIN 666 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL----~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~ 666 (883)
++.++-|+|+|..-|..+....+-..-..+.+..+.+.| ++....++..++..+..+.+..+ .+..++++..+.
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--AEHCDLIPKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 455788999998888888766222111123334444433 45566777788887777776543 344566666666
Q ss_pred HHHHHcccCChhhHHHHHHHHhccC-------CCChH---HHHHHHHHHhHhhcCCChHH----HHHHHHHHHHhhhhCC
Q psy2915 667 KLLTALNECTEWGQVFILDSLSNYS-------PKDDR---EAQSICERITPRLAHANAAV----VLSAVKVLMKLMEMLP 732 (883)
Q Consensus 667 ~L~~~l~~~~~w~qi~iL~lL~~~~-------~~~~~---~~~~il~~l~~~l~~~~~aV----~~eai~~i~~~~~~~~ 732 (883)
.++=...+.+.-..-...++|..++ ..++. -..+++..|...+-....-+ +++.-.++.+..+.++
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555456666665555444444433 11111 22344444444332222211 3344444444433333
Q ss_pred CChhhHHHHHHHhhhHHHHhc-cCCcchHHHHHHHHHHHHhhCchh-Hhhcc----ceeEEccCC-CHHHHHHHHHHHHH
Q psy2915 733 GEGDFVSTLTKKLAPPLVTLL-SSEPEVQYVALRNINLIVQKRPDI-LKHEM----KVFFVKYND-PIYVKLEKLDIMIR 805 (883)
Q Consensus 733 ~~~~l~~~~~~~~~~~L~~ll-~~~~niry~aL~~l~~l~~~~~~~-~~~~~----~~~~~l~~d-d~~Ir~~~l~lL~~ 805 (883)
. +..++ +...+..++ ++.++++-.|+.-+..++...|.. +++|. +.++-+.+| ..++|.+.-.++-+
T Consensus 822 ~--~~l~~----li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 822 D--ETLEK----LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred H--HHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 23333 444444444 578999999999999999999985 45664 444557777 99999999999999
Q ss_pred hccccchhhhh----HHHHHHHHHHHHHHhhC
Q psy2915 806 LASQANIAQVN----YVVQEAIVVIKDIFRKY 833 (883)
Q Consensus 806 l~~~~N~~~~~----~~~~e~i~~i~~l~~~~ 833 (883)
|+..-+++... ..-.+.+..|+..-++.
T Consensus 896 Lirkfg~~eLe~~~pee~~klL~nIRK~r~R~ 927 (1176)
T KOG1248|consen 896 LIRKFGAEELESFLPEEDMKLLTNIRKRRRRK 927 (1176)
T ss_pred HHHHhCHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 99999998833 33344666666665554
No 73
>KOG0567|consensus
Probab=97.99 E-value=0.00034 Score=70.91 Aligned_cols=231 Identities=19% Similarity=0.264 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhC
Q psy2915 332 NDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERID 411 (883)
Q Consensus 332 ~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~ 411 (883)
++..-.|....-.|+++++++.++.+++-|... +..+-+|.++..++|.++ .| ..++.+-++.
T Consensus 47 d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~~----~~~~~l~k~~--------- 109 (289)
T KOG0567|consen 47 DDSALLKHELAYVLGQMQDEDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--DP----ESLEILTKYI--------- 109 (289)
T ss_pred cchhhhccchhhhhhhhccchhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--ch----hhHHHHHHHh---------
Confidence 344445667777899999999999999888764 556789999999999877 22 2222222222
Q ss_pred CHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhh
Q psy2915 412 NADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILL 491 (883)
Q Consensus 412 ~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~ 491 (883)
.++-.+|+..-.-|+.++--. +.+....+.....+.||.-++.
T Consensus 110 -------------~dp~~~v~ETc~lAi~rle~~------~~~~~~~~~~p~~SvdPa~p~~------------------ 152 (289)
T KOG0567|consen 110 -------------KDPCKEVRETCELAIKRLEWK------DIIDKIANSSPYISVDPAPPAN------------------ 152 (289)
T ss_pred -------------cCCccccchHHHHHHHHHHHh------hccccccccCccccCCCCCccc------------------
Confidence 233344444333344443111 1111111111111112221100
Q ss_pred hhhHHHHHhhccCCCcccchHHH-HHhhcccc-hhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHH
Q psy2915 492 HLTRLVIASMTVGKDVSALFPDV-VNCMQTDN-LELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRT 569 (883)
Q Consensus 492 ~~l~kli~~~~~g~~~~~~~~~v-i~ll~s~~-~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~ 569 (883)
.+ -+.++ ..++..+. ...|..+-.++...+. |- ++|.|.+-+.+++.++|--+.-.
T Consensus 153 ---------------~s-sv~~lr~~lld~t~~l~~Ry~amF~LRn~g~---Ee---aI~al~~~l~~~SalfrhEvAfV 210 (289)
T KOG0567|consen 153 ---------------LS-SVHELRAELLDETKPLFERYRAMFYLRNIGT---EE---AINALIDGLADDSALFRHEVAFV 210 (289)
T ss_pred ---------------cc-cHHHHHHHHHhcchhHHHHHhhhhHhhccCc---HH---HHHHHHHhcccchHHHHHHHHHH
Confidence 00 01111 11121122 2233333333333333 33 78899999999999999999999
Q ss_pred hcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 570 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 570 L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
+|++.++.-.+.+...+.. ...+|+||-.|+.||+.+ .+++-++.|++.+.|+++.|+.++..+|.-+-
T Consensus 211 fGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaI--------a~e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 211 FGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAI--------ADEDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhh--------cCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999998877764443321 246899999999999977 22345689999999999999998887776554
No 74
>KOG2025|consensus
Probab=97.92 E-value=0.036 Score=63.62 Aligned_cols=206 Identities=14% Similarity=0.077 Sum_probs=126.4
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCC--HHHHHHHHhhhhcCCCHHHHH
Q psy2915 356 QVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDN--ADELLESFLEGFHDENTQVQL 433 (883)
Q Consensus 356 ~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~--~~~il~~l~~~~~~~~~~vr~ 433 (883)
.++..|....+..|..+|-.+.+-|+.+.-.-. .+++ +..+.+.+..++.|..+.||.
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~--------------------eidd~vfn~l~e~l~~Rl~Drep~VRi 144 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENA--------------------EIDDDVFNKLNEKLLIRLKDREPNVRI 144 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhcccc--------------------ccCHHHHHHHHHHHHHHHhccCchHHH
Confidence 344444444556667777776666655442111 1222 234556667778899999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHH
Q psy2915 434 QLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPD 513 (883)
Q Consensus 434 ~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~ 513 (883)
+++.++.++......+--++...+.....+|. ++|||-.|- .... ....-.+-
T Consensus 145 qAv~aLsrlQ~d~~dee~~v~n~l~~liqnDp-S~EVRRaaL-----snI~---------------------vdnsTlp~ 197 (892)
T KOG2025|consen 145 QAVLALSRLQGDPKDEECPVVNLLKDLIQNDP-SDEVRRAAL-----SNIS---------------------VDNSTLPC 197 (892)
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-cHHHHHHHH-----Hhhc---------------------cCcccchh
Confidence 99999999975443344455666666667775 788885432 0110 11223456
Q ss_pred HHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCC
Q psy2915 514 VVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 593 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~ 593 (883)
+++...+-+...||++|--+-.--+....-...-+..+++.+.|....|+.++.+.+..-.-.-....+...+.++=.+.
T Consensus 198 IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsn 277 (892)
T KOG2025|consen 198 IVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSN 277 (892)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhcccc
Confidence 67777777788888888653222122222222345567889999999999999999986322211122222333333466
Q ss_pred ChHHHhhHHHHHHHH
Q psy2915 594 DPYVRKTAAVCVAKL 608 (883)
Q Consensus 594 ~~~VRk~A~~al~~l 608 (883)
+..|+.+|+.|+.+.
T Consensus 278 ss~vavk~lealf~~ 292 (892)
T KOG2025|consen 278 SSEVAVKALEALFSG 292 (892)
T ss_pred chHHHHHHHHHHHHH
Confidence 779999999999884
No 75
>KOG1991|consensus
Probab=97.89 E-value=0.091 Score=62.82 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHhcCCCh------h--h-hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh-cccccccccHHHHHHHh
Q psy2915 559 NPLIRALAVRTMGCIRV------D--K-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-NAQLVEDQGFLDQLKDL 628 (883)
Q Consensus 559 n~~vr~~AL~~L~~i~~------~--~-~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-~~~~~~~~~~~~~l~~l 628 (883)
|+.-.-.|++.+|++.+ + . +-..+.+.|.-.++++.-+.|.+|+..++++... .++-..-.+..+...++
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~ 510 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNC 510 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 34444556666665421 1 2 2222445666666788888888888888777642 22221112333444445
Q ss_pred hc-CCChhHHHHHHHHHHHHHhcCCCc-hhhHHhcHHHHHHHHHHcccC
Q psy2915 629 LS-DSNPMVVANAVAALSEMNEASTSG-VALIEMNAQTINKLLTALNEC 675 (883)
Q Consensus 629 L~-D~d~~V~~~a~~~l~~i~~~~~~~-~~~~~l~~~~~~~L~~~l~~~ 675 (883)
|. |++--|+.-|+-+|.-+..+.+.. +.....+|+....+++..++.
T Consensus 511 l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 511 LLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred hccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 54 777778777777777776654444 335556777777777766554
No 76
>KOG0414|consensus
Probab=97.89 E-value=0.14 Score=62.45 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=66.4
Q ss_pred CChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccC--CcchHHHHHHHHHHHHhhCchhHhhccceeEEc-
Q psy2915 712 ANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS--EPEVQYVALRNINLIVQKRPDILKHEMKVFFVK- 788 (883)
Q Consensus 712 ~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~--~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l- 788 (883)
+++.+..+|--++.++. .-+ ......-.+.|++.+.+ +|-+|-...-.+.-++-..|+++.++-..++-.
T Consensus 935 sdp~Lq~AAtLaL~klM---~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL 1007 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLM---CIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRL 1007 (1251)
T ss_pred CCHHHHHHHHHHHHHHh---hhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHh
Confidence 44555555555555543 111 12233345556666664 555898888899999999999999887766654
Q ss_pred cCCCHHHHHHHHHHHHHhccccchhh
Q psy2915 789 YNDPIYVKLEKLDIMIRLASQANIAQ 814 (883)
Q Consensus 789 ~~dd~~Ir~~~l~lL~~l~~~~N~~~ 814 (883)
.|.++.+|+-++-+|..|.-.+=++.
T Consensus 1008 ~D~~~~vRkta~lvlshLILndmiKV 1033 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILNDMIKV 1033 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHhhhhHh
Confidence 44599999999999999987777765
No 77
>KOG4224|consensus
Probab=97.86 E-value=0.00055 Score=71.93 Aligned_cols=300 Identities=15% Similarity=0.180 Sum_probs=199.0
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCch----hhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh-----hhHH
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD----MAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDK-----ITEY 581 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~----~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~-----~~~~ 581 (883)
.-++.-++++.+....+.+.-+++.++-.... ..++-...+...+..++..+||.|..++.++.+-+ ++..
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~s 166 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARS 166 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhc
Confidence 34456678888888888887777766433211 11112233445556677789999999888774422 2211
Q ss_pred -HHHHHHhhcCCCChHHHhhHHHHHHHHHhhc--ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhH
Q psy2915 582 -LCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI 658 (883)
Q Consensus 582 -l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~--~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~ 658 (883)
-+.++.++-+.++-.||+.|..++..+-... ...+....-+|.|.+++...|+.|+.-+..++..|+-....++...
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 1234555778999999999999998876532 2222234556899999999999999999999999985444444444
Q ss_pred HhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCC
Q psy2915 659 EMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ----SICERITPRLAHANAAVVLSAVKVLMKLMEMLPGE 734 (883)
Q Consensus 659 ~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~ 734 (883)
.--|+.+..|.....+.++-.++..--.|..+..+..-... .-++.+.+++++..-..+.+.+-||-+++-+ |..
T Consensus 247 qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plN 325 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLN 325 (550)
T ss_pred hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCc
Confidence 55567788888888888998888876666666654431111 2256777888988888888988888555411 222
Q ss_pred hhh-HHHHHHHhhhHHHHhcc-CCcc-hHHHHHHHHHHHHhhCc---hhHhh--ccceeEEccCC-CHHHHHHHHHHHHH
Q psy2915 735 GDF-VSTLTKKLAPPLVTLLS-SEPE-VQYVALRNINLIVQKRP---DILKH--EMKVFFVKYND-PIYVKLEKLDIMIR 805 (883)
Q Consensus 735 ~~l-~~~~~~~~~~~L~~ll~-~~~n-iry~aL~~l~~l~~~~~---~~~~~--~~~~~~~l~~d-d~~Ir~~~l~lL~~ 805 (883)
..+ .++ ....||+.+++ ++.+ ++..|.+.+.-++.... ..+.. -++...|+.-| +.+++.+.---+..
T Consensus 326 e~lI~da---gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 326 EVLIADA---GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred ccceecc---cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 111 111 34567999998 5554 99999999999887542 22222 34555555545 89999888777777
Q ss_pred hccccchhh
Q psy2915 806 LASQANIAQ 814 (883)
Q Consensus 806 l~~~~N~~~ 814 (883)
++=.+|-+.
T Consensus 403 Lal~d~~k~ 411 (550)
T KOG4224|consen 403 LALNDNDKE 411 (550)
T ss_pred HHhccccHH
Confidence 776666554
No 78
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0014 Score=68.26 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=142.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCC-Chhh-hhHHH-----HHHHHhhcCCCCh--HHHhhHHHHHHHHHh-hcc--c
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCI-RVDK-ITEYL-----CEPLRKCLKDEDP--YVRKTAAVCVAKLYD-INA--Q 614 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i-~~~~-~~~~l-----~~~l~~~l~d~~~--~VRk~A~~al~~l~~-~~~--~ 614 (883)
+++.+...|.+++..||--|+-+||++ ++.+ +-+++ +.++..++.++.+ ..-+.|--.|..+++ +.| +
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 567788889999999999999999999 3333 33333 2456666666655 344788888888887 332 2
Q ss_pred ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCC
Q psy2915 615 LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 615 ~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~ 694 (883)
--.....+|.|.+|+...|+.|..-|+=++..+... |.-..-..+......+|++.|...+--.|.-+||..+.+...+
T Consensus 238 w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 238 WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 222234678888999999999999999999999754 2111111233334456777776666656777999999886554
Q ss_pred hHHHH-----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhccC
Q psy2915 695 DREAQ-----SICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLSS 755 (883)
Q Consensus 695 ~~~~~-----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~~ 755 (883)
+.... ..++.+..+|.+.-..++-|++=+|.++. .+..+-.+.++. .++|+|+.++++
T Consensus 317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT---AGnteqiqavid~nliPpLi~lls~ 380 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT---AGNTEQIQAVIDANLIPPLIHLLSS 380 (526)
T ss_pred ccceehheecccHHHHHHHhcChhhhhhhhhheeecccc---cCCHHHHHHHHhcccchHHHHHHHH
Confidence 43332 34667778888888899999999998874 344344455555 688999998874
No 79
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.67 E-value=0.00015 Score=63.74 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=57.4
Q ss_pred hhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy2915 575 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANAVAALSEM 647 (883)
Q Consensus 575 ~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D~d~~V~~~a~~~l~~i 647 (883)
..+..+.++++|.+++.|+++.||..|+.+++.+.+..++.+.+ .+..+.|.+++.|.|+.|+.+|- .|-.+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 56778889999999999999999999999999999976555431 23556677888999999998884 44443
No 80
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.64 E-value=0.0012 Score=69.20 Aligned_cols=172 Identities=18% Similarity=0.199 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHhcCCChhhhhHH------HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh-
Q psy2915 557 DSNPLIRALAVRTMGCIRVDKITEY------LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL- 629 (883)
Q Consensus 557 ~~n~~vr~~AL~~L~~i~~~~~~~~------l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL- 629 (883)
+.+|.++..|+.++++...-...+. .++.|...+++++|.||.+|+.|+..+.-..+.......+++.+.+..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 4678999999999998755333333 447788999999999999999999877543332222233445555433
Q ss_pred c-CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHH
Q psy2915 630 S-DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICE 703 (883)
Q Consensus 630 ~-D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~ 703 (883)
. .-|..++.+++.+|..+.-.+ + +-.+....+..++..+...+.-.|..+|++|..+.-+.. ... +.+.
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~-~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~-~~~~Ll~~q~~~ 178 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTN-D---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD-MTRELLSAQVLS 178 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCc-c---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH-HHHHHHhccchh
Confidence 3 348899999999999997442 2 223334566677888878888899999999999875433 122 3344
Q ss_pred HHhHhhcCC-ChHHHHHHHHHHHHhhhhCCC
Q psy2915 704 RITPRLAHA-NAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 704 ~l~~~l~~~-~~aV~~eai~~i~~~~~~~~~ 733 (883)
.+..+.+.. +..++..++..+-.+...+.+
T Consensus 179 ~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 179 SFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 556666665 558999999998888654443
No 81
>KOG2259|consensus
Probab=97.62 E-value=0.0017 Score=73.47 Aligned_cols=302 Identities=18% Similarity=0.140 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHhcChhhH-HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCC
Q psy2915 334 PIYVKLEKLDIMIRLASQANI-AQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDN 412 (883)
Q Consensus 334 ~~~Ir~~aL~iL~~l~~~~nv-~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~ 412 (883)
|..||..|++-|.++.+---. ..+.+...+.+.|.++++|.+|++.+.-.+..+|...+. .++...-
T Consensus 211 D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~------------e~~e~kl 278 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER------------ESEEEKL 278 (823)
T ss_pred CcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc------------hhhhhhh
Confidence 344444444444444331111 123444455667778899999999999888877521100 0111222
Q ss_pred HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhh
Q psy2915 413 ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLH 492 (883)
Q Consensus 413 ~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~ 492 (883)
.+..+..+-+...|.+..||.++..+++-+-. -.++++.+.+..-... ..-|.|-. ...+
T Consensus 279 ~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~----vSee~i~QTLdKKlms---~lRRkr~a------hkrp------- 338 (823)
T KOG2259|consen 279 KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ----VSEEIIQQTLDKKLMS---RLRRKRTA------HKRP------- 338 (823)
T ss_pred HHHHHHHHHHHHhcCceeeeehHHHHhchHHH----hHHHHHHHHHHHHHhh---hhhhhhhc------ccch-------
Confidence 34566667777778888888877777765522 2344555555432211 01111100 0000
Q ss_pred hhHHHH--HhhccCCC----cccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHH
Q psy2915 493 LTRLVI--ASMTVGKD----VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALA 566 (883)
Q Consensus 493 ~l~kli--~~~~~g~~----~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~A 566 (883)
+.+. ..++.|.. ++... .+...+--+. .=++..+.-.+.|+=..||.+|
T Consensus 339 --k~l~s~GewSsGk~~~advpsee--------~d~~~~siI~---------------sGACGA~VhGlEDEf~EVR~AA 393 (823)
T KOG2259|consen 339 --KALYSSGEWSSGKEWNADVPSEE--------DDEEEESIIP---------------SGACGALVHGLEDEFYEVRRAA 393 (823)
T ss_pred --HHHHhcCCcccCccccccCchhh--------cccccccccc---------------ccccceeeeechHHHHHHHHHH
Confidence 0000 00112221 11100 0000000011 1123344445566667899999
Q ss_pred HHHhcCCCh--hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHH
Q psy2915 567 VRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAL 644 (883)
Q Consensus 567 L~~L~~i~~--~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l 644 (883)
+-+++++.. |.++..-+..+...++|.-..||-+|+.++..+..+ .....+..+.+...|.|..+.||.++-.+|
T Consensus 394 V~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~---l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 394 VASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH---LAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---heecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999855 999999999999999999999999999999998776 223345678888899999999999888776
Q ss_pred HHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHH
Q psy2915 645 SEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSIC 702 (883)
Q Consensus 645 ~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il 702 (883)
....- ++ ...+...+.+|++.+.. -|-..-.+++.+.+++.+.+.....++
T Consensus 471 ~~~~~--~d----~~~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH~~lv~s~m 521 (823)
T KOG2259|consen 471 KNARV--SD----LECIDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNHRRLVLSNM 521 (823)
T ss_pred HhcCC--Cc----HHHHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccChhhHHHHH
Confidence 65532 11 23344555566655431 222233455666666655554443333
No 82
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.62 E-value=0.032 Score=64.22 Aligned_cols=134 Identities=16% Similarity=0.267 Sum_probs=99.1
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHh
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIR--VDKITEYLCEPLRK 588 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~~~~~~l~~~l~~ 588 (883)
|..++.... .+...|+++.-++..|++.-|++..-++|.+...+.|++..||..|++.|..+. .++....+...+.+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 444444443 467899999999999999999999999999999999999999999999999984 57899999999999
Q ss_pred hcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh--cCCChhHHHHHHHHHHHHHh
Q psy2915 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL--SDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 589 ~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL--~D~d~~V~~~a~~~l~~i~~ 649 (883)
+|...++..+..+=.+|..+++.+|... +...+..++ ..+|..||.-++..+..-..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 9998888888777778888888887654 334455555 24577899999987755443
No 83
>KOG1240|consensus
Probab=97.60 E-value=0.0034 Score=75.46 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=113.9
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCch
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV 655 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~ 655 (883)
..+...+...+..++.|+.|+||++-+..++.++..+...-.+.-+...|...|+|+|+..|.+=...+..++--- ++.
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V-G~r 651 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV-GWR 651 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE-eee
Confidence 4456667778888999999999999999999999977665555567899999999999999999888777554110 000
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC---CCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhC
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS---PKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEML 731 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~ 731 (883)
....-.+--|.+.+.+..|...+++|+.|..+. .-......++++.+.++|-|.|.=|+.+++..|...+..+
T Consensus 652 ---s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 652 ---SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred ---eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 011122335566678899999999888777654 4455566789999999999999988888888888776433
No 84
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.59 E-value=0.00038 Score=72.55 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=88.7
Q ss_pred HHhhcccchhHHHHHHHHHHhh----ccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh-hhHHH-HHHHHh
Q psy2915 515 VNCMQTDNLELKKLVYLYLMNY----AKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDK-ITEYL-CEPLRK 588 (883)
Q Consensus 515 i~ll~s~~~~~kr~~yl~~~~~----~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~-~~~~l-~~~l~~ 588 (883)
++.+.+....+-+.+...+..+ ++.-......+++.+.+-+.+++..+|..|-.+|..+...- ..+.+ .+.+..
T Consensus 59 ~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~ 138 (228)
T PF12348_consen 59 IKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQ 138 (228)
T ss_dssp HH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 3444444444444444444433 33333445778899999999999999999988887663321 12334 678888
Q ss_pred hcCCCChHHHhhHHHHHHHHHhhcc---ccccc----ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 589 CLKDEDPYVRKTAAVCVAKLYDINA---QLVED----QGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 589 ~l~d~~~~VRk~A~~al~~l~~~~~---~~~~~----~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
+.+|++|.||..++..+..+....+ ..+.. +.+.+.+..++.|.++.||.+|-.++..+.+..|
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999988777 33332 3477888889999999999999999999976533
No 85
>KOG1240|consensus
Probab=97.58 E-value=0.0084 Score=72.29 Aligned_cols=273 Identities=15% Similarity=0.204 Sum_probs=168.5
Q ss_pred CHHHHHHHHHHHHHhc----ChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHh---hchhhHHHHHHHHHHHHHhHh
Q psy2915 334 PIYVKLEKLDIMIRLA----SQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAI---KVEQSAERCVSTLLDLIQTKY 406 (883)
Q Consensus 334 ~~~Ir~~aL~iL~~l~----~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~---k~~~~~~~~v~~Ll~lL~~~~ 406 (883)
....|..||++|..+. ++.-++.|+.-+.....|.+.+||..|+.++.++-. .+|+.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~---------------- 499 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS---------------- 499 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc----------------
Confidence 4457889999887765 456667777777777899999999999999987653 12211
Q ss_pred hhhhCCHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHhhcCCchHHHHHH--HHHHHhhcCCCChhhhhhhHHHHHhhcC
Q psy2915 407 AERIDNADELLESFLEGFHD-ENTQVQLQLLTAIVKLFLKRPTDTQELVQ--QVLSLATQDSDNPDLRDRGFIYWRLLST 483 (883)
Q Consensus 407 ~~~i~~~~~il~~l~~~~~~-~~~~vr~~~L~al~Kl~~~~~~~~~~~l~--~ll~~~~~d~~~~evrdrA~~y~~ll~~ 483 (883)
+.---.+|++..+..-..+ ....||....+.++++... +...+. +-++.+.-. ++++-... +....
T Consensus 500 -daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~-n~~nset~-----~~~~~ 568 (1431)
T KOG1240|consen 500 -DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGML-NDPNSETA-----PEQNY 568 (1431)
T ss_pred -cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccc-cCcccccc-----ccccc
Confidence 0000123455555444444 5567888777777766432 111122 122222111 11221100 00011
Q ss_pred CchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHH----HhhccCC-chhhHhHHHHHHhhcCCC
Q psy2915 484 GNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYL----MNYAKSH-PDMAIMAVNTFVKDCEDS 558 (883)
Q Consensus 484 ~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~----~~~~~~~-~~~~~l~~n~l~kdl~~~ 558 (883)
..+...+.+.+.+. +..++.+++..+||..--.+ .-+++.+ .|+ +...+.--|+|.
T Consensus 569 ~~~~~~L~~~V~~~----------------v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~---iLshLiTfLNDk 629 (1431)
T KOG1240|consen 569 NTELQALHHTVEQM----------------VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV---ILSHLITFLNDK 629 (1431)
T ss_pred chHHHHHHHHHHHH----------------HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc---hHHHHHHHhcCc
Confidence 11122222222222 34556666666666532222 2224443 344 446777788999
Q ss_pred CHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhc---ccccccccHHHHHHHhhcC
Q psy2915 559 NPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN---AQLVEDQGFLDQLKDLLSD 631 (883)
Q Consensus 559 n~~vr~~AL~~L~~i----~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~---~~~~~~~~~~~~l~~lL~D 631 (883)
++..|++=...+..+ |....-++++|.+.+++.|+.+.|--+|+.|+.-+++.+ ...+ -++++....+|.-
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~h 707 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCH 707 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeC
Confidence 999999999988854 556678999999999999999999999999999888843 1122 2455666678889
Q ss_pred CChhHHHHHHHHHHHHHhcCCCc
Q psy2915 632 SNPMVVANAVAALSEMNEASTSG 654 (883)
Q Consensus 632 ~d~~V~~~a~~~l~~i~~~~~~~ 654 (883)
+|.-+|.+++..+..+..+-.+.
T Consensus 708 PN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 708 PNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999998664443
No 86
>KOG2062|consensus
Probab=97.52 E-value=0.33 Score=56.34 Aligned_cols=126 Identities=19% Similarity=0.149 Sum_probs=89.2
Q ss_pred HHHhhcccchhHHHHHHHHHHh-h-ccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhh
Q psy2915 514 VVNCMQTDNLELKKLVYLYLMN-Y-AKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI--RVDKITEYLCEPLRKC 589 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~~~~-~-~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i--~~~~~~~~l~~~l~~~ 589 (883)
+-+++.+.|+.+|+-|-+.+.. | +..+... +...+--..+|.|..||++|..+||-+ .+|+..+.++..+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnka---ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lL--- 597 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKA---IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLL--- 597 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhh---HHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHH---
Confidence 3457888899999887655332 2 2222221 222233346899999999999999965 7787776544332
Q ss_pred cCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 590 LKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 590 l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
-.+-+|+||.-|+++++-.+.-... ...+..|..+..|....||..|+-++.-|.-
T Consensus 598 ses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 598 SESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred hhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 3577999999999999966653222 2356888899999999999999998887754
No 87
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.50 E-value=0.011 Score=67.14 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=108.2
Q ss_pred cchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC-----ChhhhhH-------HHHHHHHh
Q psy2915 521 DNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI-----RVDKITE-------YLCEPLRK 588 (883)
Q Consensus 521 ~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i-----~~~~~~~-------~l~~~l~~ 588 (883)
++..-.|-..+++..+....|.+.+--.+.+.+.+.++....||.-+...|++ .++++.+ .++..+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 34444467788888888889998888889999999999999999999999986 4455554 46677778
Q ss_pred hcCCCChHHHhhHHHHHHHHHhhcccccc-cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVE-DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 589 ~l~d~~~~VRk~A~~al~~l~~~~~~~~~-~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.+.|.+||+|.+|+..+.+++........ ..+++....+.|+|+...||.+|+.++.++.-..|
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999986544433 23577888899999999999999999999986544
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.44 E-value=0.21 Score=56.99 Aligned_cols=228 Identities=17% Similarity=0.260 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHhhccCCchh-----hHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhc-CCC
Q psy2915 524 ELKKLVYLYLMNYAKSHPDM-----AIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCL-KDE 593 (883)
Q Consensus 524 ~~kr~~yl~~~~~~~~~~~~-----~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~~~~~~~l~~~l~~~l-~d~ 593 (883)
..++...++.+.+....++. ..++...+.--...+++..|..|++.++.+ ...+..+.++..+...+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 34566666666664443332 222333333334556699999999998865 23334444444444444 456
Q ss_pred ChHHHhhHHHHHHHHHh-----hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHH-hcHHHHHH
Q psy2915 594 DPYVRKTAAVCVAKLYD-----INAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIE-MNAQTINK 667 (883)
Q Consensus 594 ~~~VRk~A~~al~~l~~-----~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~-l~~~~~~~ 667 (883)
.+..|..++..+.-+.+ .+|... .+.+.+.++|.| +.+...|..++.-+....+ ++.. -.+..++-
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~~---~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~---~~l~~~~~a~vkl 314 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLAT---ELLDKLLELLSS--PELGQQAAKAFGILLSDSD---DVLNKENHANVKL 314 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH---HhcCccccchhhh
Confidence 66677777777755444 455543 578888888887 6777788888888875422 1110 01112222
Q ss_pred HHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhh
Q psy2915 668 LLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAP 747 (883)
Q Consensus 668 L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~ 747 (883)
|.+ | +-...+++.+....+..+..+.-....++.++..+.|. .+...-+..+.|
T Consensus 315 Lyk---------Q---------------R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~--~vl~~~l~~LlP 368 (415)
T PF12460_consen 315 LYK---------Q---------------RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK--SVLLPELPTLLP 368 (415)
T ss_pred HHh---------H---------------HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH--HHHHHHHHHHHH
Confidence 222 1 11124455555555555543333334444444444453 333344566788
Q ss_pred HHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhcccee
Q psy2915 748 PLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVF 785 (883)
Q Consensus 748 ~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~~ 785 (883)
.++.-++ .++++++.+|+.+..++...|+.+.+|+..+
T Consensus 369 LLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 369 LLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 7777666 6788999999999999999999999998543
No 89
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.36 E-value=0.004 Score=64.84 Aligned_cols=185 Identities=19% Similarity=0.175 Sum_probs=117.5
Q ss_pred cCCCChHHHhhHHHHHHHHHhhc-ccccccccHHH-------HHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhc
Q psy2915 590 LKDEDPYVRKTAAVCVAKLYDIN-AQLVEDQGFLD-------QLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMN 661 (883)
Q Consensus 590 l~d~~~~VRk~A~~al~~l~~~~-~~~~~~~~~~~-------~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~ 661 (883)
-++.+|.-|..|+..+.++.+.+ +.... +.+.+ .+...+.|....|...|+.++..+..... ..+-+..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~--~~~~~~~ 92 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFP-PDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG--SHFEPYA 92 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG--GGGHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccH-HHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--HhHHHHH
Confidence 47889999999999999998876 22211 23334 44456678889999999999999987533 2344566
Q ss_pred HHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHH-HHHHhHhhcCCChHHHHHHHHHHHHhhhhCCC-ChhhHH
Q psy2915 662 AQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSI-CERITPRLAHANAAVVLSAVKVLMKLMEMLPG-EGDFVS 739 (883)
Q Consensus 662 ~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i-l~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~-~~~l~~ 739 (883)
...+..|++.+.+...+......+.|..+...-+ -...+ ...+....++.|+.|+.+|+..+..+....+. .+.+..
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 6777888888888888888776666655543222 01144 67778889999999999999999998766652 122211
Q ss_pred -HHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhH
Q psy2915 740 -TLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDIL 778 (883)
Q Consensus 740 -~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~ 778 (883)
..+..+.+.+..+++ .++++|..|-..+..+....|+-.
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 224567777777776 689999999999998887776653
No 90
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.35 E-value=0.00048 Score=63.32 Aligned_cols=102 Identities=24% Similarity=0.188 Sum_probs=82.1
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCch--h----hhH-HHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccc---c
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVD--K----ITE-YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---V 186 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~--~----~~~-~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~---~ 186 (883)
+++.+.+-+.++++.+|..|+.+|+++... + +.+ .+++.+.+++.|+++.||+.|+.+++.+....|+. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 445577788899999999999999998652 2 233 56677888899999999999999999998766432 2
Q ss_pred ccccHHHHHHHHhcCCChhHHHHHHHHHHhcc
Q psy2915 187 EDQGFLDQLKDLLSDSNPMVVANAVAAILLLP 218 (883)
Q Consensus 187 ~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~ 218 (883)
.+.+.++.+.+++++.+..++..|+.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23557889999999999999999999988765
No 91
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.34 E-value=0.00048 Score=63.31 Aligned_cols=102 Identities=25% Similarity=0.223 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hh----hhH-HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---c
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRV--DK----ITE-YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---V 616 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i~~--~~----~~~-~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~ 616 (883)
+++.+.+-++++++.+|..|+.+|+++.. ++ +.+ .+++.+.+.+.|+++.||+.|+.++.++....+.. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 44566666777888888888888887743 22 222 46678888899999999999999999998765432 2
Q ss_pred ccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 617 EDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 617 ~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
.+..+++.+.+++++.+..++..|+.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23457889999999999999999999988775
No 92
>KOG1943|consensus
Probab=97.34 E-value=0.45 Score=57.68 Aligned_cols=233 Identities=18% Similarity=0.231 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhh-cCCCH
Q psy2915 351 QANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGF-HDENT 429 (883)
Q Consensus 351 ~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~-~~~~~ 429 (883)
+.-++.+++.|..-+++.|..+|..+.+.+|+++.+.|..- ++++++..++.+ .-+++
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---------------------ad~vi~svid~~~p~e~~ 394 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---------------------ADQVIGSVIDLFNPAEDD 394 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---------------------HHHHHHHHHHhcCcCCch
Confidence 35577888888888999999999999999999999998431 112222222211 11222
Q ss_pred HHHHHHHHHHHHHhhc---CCchHHHHHHHHHHHhhcCC------CChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHh
Q psy2915 430 QVQLQLLTAIVKLFLK---RPTDTQELVQQVLSLATQDS------DNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIAS 500 (883)
Q Consensus 430 ~vr~~~L~al~Kl~~~---~~~~~~~~l~~ll~~~~~d~------~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~ 500 (883)
..=-.+..++|++..+ -|+...++++-++..+.++. .-.-|||.|++.-..+...-+...+...+.++...
T Consensus 395 ~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~ 474 (1133)
T KOG1943|consen 395 SAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA 474 (1133)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 3333666777777655 35556666666666555442 13468999965443333322111111122222221
Q ss_pred hc----------------------cCCCcccchHHHHHhhcccch-hH--HHHHHHHHHhhccCCchhhHhHHHHHH-hh
Q psy2915 501 MT----------------------VGKDVSALFPDVVNCMQTDNL-EL--KKLVYLYLMNYAKSHPDMAIMAVNTFV-KD 554 (883)
Q Consensus 501 ~~----------------------~g~~~~~~~~~vi~ll~s~~~-~~--kr~~yl~~~~~~~~~~~~~~l~~n~l~-kd 554 (883)
.. .|. ..-+++-+.++++.|+ ++ +.-+|+.+.....+.+....-+.|.+. +-
T Consensus 475 LL~~AlFDrevncRRAAsAAlqE~VGR--~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K 552 (1133)
T KOG1943|consen 475 LLIVALFDREVNCRRAASAALQENVGR--QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK 552 (1133)
T ss_pred HHHHHhcCchhhHhHHHHHHHHHHhcc--CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc
Confidence 11 121 0112233344554443 22 233677777776665554444444433 44
Q ss_pred cCCCCHHHHHHHHHHhcCC--Chhh-hhHHHHHHHHhhcCCCChHHHhhHHHHHH
Q psy2915 555 CEDSNPLIRALAVRTMGCI--RVDK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVA 606 (883)
Q Consensus 555 l~~~n~~vr~~AL~~L~~i--~~~~-~~~~l~~~l~~~l~d~~~~VRk~A~~al~ 606 (883)
+.+=++.+|-+|..+|.++ ..|+ ++...+|++......+++.-|--...+.+
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 6777788888888877765 2333 44466777777777777777754444444
No 93
>KOG0946|consensus
Probab=97.33 E-value=0.2 Score=58.46 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=98.0
Q ss_pred hccCCChhHHHHHHHHHHHhhccCCc-chhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHH
Q psy2915 57 CMQTDNLELKKLVYLYLMNYAKSHPD-MAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRAL 135 (883)
Q Consensus 57 ~~~~~~~~~k~~~y~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~l 135 (883)
+=+++=++.||=+-.++..+++..-+ +..+..+. .|. ++++|-. ||.+..-
T Consensus 31 vessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~------------li~--------------vL~~D~~--D~E~ik~ 82 (970)
T KOG0946|consen 31 VESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKP------------LIQ--------------VLQRDYM--DPEIIKY 82 (970)
T ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHH------------HHH--------------HHhhccC--CHHHHHH
Confidence 44566677788887777777766433 33333332 111 1555554 5568888
Q ss_pred HHHHhccCCchh------------------hh------HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccc----
Q psy2915 136 AVRTMGCIRVDK------------------IT------EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE---- 187 (883)
Q Consensus 136 ALr~L~~i~~~~------------------~~------~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~---- 187 (883)
||.++..+-+.+ ++ +..+..+...+.+.+.+||+.|+.-+-.+....|.-++
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 898888763321 11 33445677778899999999999999888876665443
Q ss_pred -cccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc
Q psy2915 188 -DQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR 225 (883)
Q Consensus 188 -~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~ 225 (883)
.|.-+..+..+|.|.-.-+|..|+..|.++.+.++...
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQ 201 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQ 201 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHH
Confidence 34556888999999999999999999999998876544
No 94
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.33 E-value=0.01 Score=62.14 Aligned_cols=179 Identities=21% Similarity=0.265 Sum_probs=126.1
Q ss_pred HHhhcC-CCChHHHhhHHHHHHHHHh--hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcH
Q psy2915 586 LRKCLK-DEDPYVRKTAAVCVAKLYD--INAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNA 662 (883)
Q Consensus 586 l~~~l~-d~~~~VRk~A~~al~~l~~--~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~ 662 (883)
+...|. .++|+++.+|..+++.... ...+.+.+..-++.+.++|.++++.|+..|+.++..+....++ ...+.
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en----~~~Ik 92 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN----QEQIK 92 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh----HHHHH
Confidence 444555 6789999999999998644 2334455556789999999999999999999999988754322 22334
Q ss_pred HHHHHHHHHccc--CChhhHHHHHHHHhccCCCCh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhH
Q psy2915 663 QTINKLLTALNE--CTEWGQVFILDSLSNYSPKDD--REAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFV 738 (883)
Q Consensus 663 ~~~~~L~~~l~~--~~~w~qi~iL~lL~~~~~~~~--~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~ 738 (883)
..+.++++.+.. .+...|...|++|..++-.++ ......++.+..++.+.+..+...+.+++..++ .+|...
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS----~np~~~ 168 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS----ENPDMT 168 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc----cCHHHH
Confidence 556677775543 366789999999999975442 233456777888999999999999999999995 555554
Q ss_pred HHHHH-HhhhHHHHhccC--CcchHHHHHHHHHHHHh
Q psy2915 739 STLTK-KLAPPLVTLLSS--EPEVQYVALRNINLIVQ 772 (883)
Q Consensus 739 ~~~~~-~~~~~L~~ll~~--~~niry~aL~~l~~l~~ 772 (883)
...+. .....++.|+.+ +.++-.-+|..+.-|..
T Consensus 169 ~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 169 RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 44444 455566666664 34566666666655543
No 95
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.28 E-value=0.015 Score=69.52 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=76.8
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHH
Q psy2915 546 MAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 625 (883)
Q Consensus 546 l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l 625 (883)
.+.+.+.+..+..+...+.++|++||+++.+.....+.+.+. .-...++++|..|+.|+.++....|+.+. +.+
T Consensus 446 ~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l 519 (574)
T smart00638 446 YLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVL 519 (574)
T ss_pred HHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHH
Confidence 344455555566778889999999999999999998888875 23456789999999999999888888764 555
Q ss_pred HHhhc--CCChhHHHHHHHHHHHHH
Q psy2915 626 KDLLS--DSNPMVVANAVAALSEMN 648 (883)
Q Consensus 626 ~~lL~--D~d~~V~~~a~~~l~~i~ 648 (883)
...+. +.+++||.+|+.++.+..
T Consensus 520 ~~i~~n~~e~~EvRiaA~~~lm~t~ 544 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVLVLMETK 544 (574)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcC
Confidence 55554 578999999999888875
No 96
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.27 E-value=0.53 Score=53.22 Aligned_cols=219 Identities=12% Similarity=0.129 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHH
Q psy2915 354 IAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQL 433 (883)
Q Consensus 354 v~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~ 433 (883)
|..++..+...++..|..+|..+.+-++.+.....+..+.. +..+++.+.+++.+..+.||.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l------------------~N~L~ekl~~R~~DRE~~VR~ 150 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVL------------------ANGLLEKLSERLFDREKAVRR 150 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHH------------------HHHHHHHHHHHHhcchHHHHH
Confidence 44455555555677788888877777765553221111111 223556677788899999999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHH
Q psy2915 434 QLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPD 513 (883)
Q Consensus 434 ~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~ 513 (883)
+++.++.++......+-.....-+.....+|. ..|||-.|- .+.. .-..-.+-
T Consensus 151 eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDP-S~EVRr~al------------------------lni~--vdnsT~p~ 203 (885)
T COG5218 151 EAVKVLCYYQEMELNEENRIVNLLKDIVQNDP-SDEVRRLAL------------------------LNIS--VDNSTYPC 203 (885)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCc-HHHHHHHHH------------------------HHee--eCCCcchh
Confidence 99999999864433222222222333333332 344443221 1111 11223556
Q ss_pred HHHhhcccchhHHHHHHHH-HHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC
Q psy2915 514 VVNCMQTDNLELKKLVYLY-LMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKD 592 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~-~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d 592 (883)
+++...+-+..-||++|-- +..+++....-..--+-.+.+.+.|....++.++.++++.-.-...--.++. +...+.-
T Consensus 204 IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lve-Lle~lDv 282 (885)
T COG5218 204 ILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVE-LLEFLDV 282 (885)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHH-HHHHHhh
Confidence 7777777788889998864 4444443221111111256788889999999999999885311111111111 1112221
Q ss_pred CChHHHhhHHHHHHHHHhhcccccccccH
Q psy2915 593 EDPYVRKTAAVCVAKLYDINAQLVEDQGF 621 (883)
Q Consensus 593 ~~~~VRk~A~~al~~l~~~~~~~~~~~~~ 621 (883)
+ =|+-++.|+-.++..-|+.....+|
T Consensus 283 S---r~sv~v~aik~~F~~R~D~ls~~eF 308 (885)
T COG5218 283 S---RRSVLVAAIKGVFEKRPDVLSEKEF 308 (885)
T ss_pred h---hHHHHHHHHHHHHhhccccchhhhc
Confidence 1 2334555555566766666543333
No 97
>KOG1992|consensus
Probab=97.20 E-value=0.81 Score=53.94 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=53.0
Q ss_pred hhhHhHHHHHHhhcCCC----CHHHHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHh
Q psy2915 542 DMAIMAVNTFVKDCEDS----NPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD 610 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~~----n~~vr~~AL~~L~~i---~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~ 610 (883)
++.....|.+..||.++ +|+.++.|++.+-.. -.++..-.++|.+.+.|..+++-|-+=|+.|+-++.-
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 45566788888899884 488999999876644 3455666677888888888899999989888877654
No 98
>KOG2025|consensus
Probab=97.17 E-value=0.59 Score=54.13 Aligned_cols=91 Identities=24% Similarity=0.358 Sum_probs=42.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHH
Q psy2915 550 TFVKDCEDSNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD 623 (883)
Q Consensus 550 ~l~kdl~~~n~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~ 623 (883)
.+.|...+++-.||--.++-++.+.+ ..+...+...+...+.|+-|.||..|+.|+.++-. +|.. +..+..+
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~d-ee~~v~n 166 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKD-EECPVVN 166 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCC-CcccHHH
Confidence 33444444444444444444443322 23333344444445556666666666666655532 1111 1123445
Q ss_pred HHHHhhc-CCChhHHHHHHH
Q psy2915 624 QLKDLLS-DSNPMVVANAVA 642 (883)
Q Consensus 624 ~l~~lL~-D~d~~V~~~a~~ 642 (883)
.+..+++ |+++.||.+|+.
T Consensus 167 ~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 167 LLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred HHHHHHhcCCcHHHHHHHHH
Confidence 5555554 666666666654
No 99
>KOG4535|consensus
Probab=97.12 E-value=0.079 Score=58.19 Aligned_cols=133 Identities=16% Similarity=0.208 Sum_probs=86.1
Q ss_pred hccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHH
Q psy2915 57 CMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALA 136 (883)
Q Consensus 57 ~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lA 136 (883)
+.+..+--.||..|=||..+.++-|+.- +.+. +.--|+|+||.-|++|
T Consensus 20 ~~~~~~~~~~~~~ygyw~~~~pd~~~~g---~p~l-----------------------------~~l~lkd~~~~~ra~a 67 (728)
T KOG4535|consen 20 FLSTIKSIEKKVLYGYWSAFIPDTPELG---SPSL-----------------------------MTLTLKDPSPKTRACA 67 (728)
T ss_pred HHHHHhhhhhhhhhceeeeecCCCCCCC---Ccee-----------------------------eEEecCCCChhHHHHH
Confidence 3444566689999999999988877652 2220 3445899999999999
Q ss_pred HHHhccC--Cchhh----------------------hHHHHHHHHhhc-CCCChhHHHHHHHHHHHHhhhCccc-cc---
Q psy2915 137 VRTMGCI--RVDKI----------------------TEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQL-VE--- 187 (883)
Q Consensus 137 Lr~L~~i--~~~~~----------------------~~~l~~~v~~~l-~d~~~~VRk~A~~al~kl~~~~p~~-~~--- 187 (883)
|..++.+ ++..+ +..+...+.-.+ ...+|-|--..+.|+..+.+..|=. ++
T Consensus 68 lqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~ 147 (728)
T KOG4535|consen 68 LQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSL 147 (728)
T ss_pred HHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9998864 11111 112223333333 2334555556666777666554411 00
Q ss_pred cccHHHHHHHHhcCCChhHHHHHHHHHHhccccC
Q psy2915 188 DQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKS 221 (883)
Q Consensus 188 ~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~ 221 (883)
-.++...+++++..+|+.|+.+++..++-+...+
T Consensus 148 ~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 148 LTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 1335678888999999999999999999887654
No 100
>KOG0168|consensus
Probab=96.99 E-value=0.46 Score=56.01 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=72.7
Q ss_pred hchhcCCC-CHHHHHHHHHHhccC---Cchh-----hhHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHhhhCccccc---
Q psy2915 121 FVKDCEDS-NPLIRALAVRTMGCI---RVDK-----ITEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQLVE--- 187 (883)
Q Consensus 121 l~kDL~~~-n~~vr~lALr~L~~i---~~~~-----~~~~l~~~v~~~l~d~-~~~VRk~A~~al~kl~~~~p~~~~--- 187 (883)
|..-|+.. +|..+-.|+.-||.. ++.+ .++.++|.+..++.|+ ++.+---|+.|+..++...|....
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence 44445544 888888888888863 3332 3467788888888886 577888888898888888886643
Q ss_pred cccHHHHHHH-HhcCCChhHHHHHHHHHHhccccCCcc
Q psy2915 188 DQGFLDQLKD-LLSDSNPMVVANAVAAILLLPRKSYWQ 224 (883)
Q Consensus 188 ~~~~~~~L~~-lL~D~d~~V~~~a~~~L~ei~~~~~~~ 224 (883)
+...+|.+.+ |+.=+--.|.-.++.+|..|.+.+|..
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 4556666654 444456667777788888887776543
No 101
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.95 E-value=0.0011 Score=44.87 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHHHh
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLYD 610 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l~~ 610 (883)
++|.+.++++|++|.||.+|+.|++++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999998865
No 102
>KOG1248|consensus
Probab=96.95 E-value=1.7 Score=53.48 Aligned_cols=224 Identities=16% Similarity=0.186 Sum_probs=135.8
Q ss_pred hhcCCCCHHHHHHHHHHhcCCCh--------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc--ccHH
Q psy2915 553 KDCEDSNPLIRALAVRTMGCIRV--------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFL 622 (883)
Q Consensus 553 kdl~~~n~~vr~~AL~~L~~i~~--------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~ 622 (883)
.+.++.++.++.-|-+-|..+.. ....+.+...+...+++.+...|+.++.|+..+++..|....+ +..+
T Consensus 661 ~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I 740 (1176)
T KOG1248|consen 661 EFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI 740 (1176)
T ss_pred HhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34456688888888777765422 2344555666666777888999999999999999988822210 2333
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHH--hcCCCchhhHHhcHHHHHHHHHHcccC--Ch--hh----HHHHHHHHhccC-
Q psy2915 623 DQLKDLLSDSNPMVVANAVAALSEMN--EASTSGVALIEMNAQTINKLLTALNEC--TE--WG----QVFILDSLSNYS- 691 (883)
Q Consensus 623 ~~l~~lL~D~d~~V~~~a~~~l~~i~--~~~~~~~~~~~l~~~~~~~L~~~l~~~--~~--w~----qi~iL~lL~~~~- 691 (883)
+.+.=.+.+.|..-+.+|..+|..++ ...-+.. -+-.+..++.++..+... ++ -. -+.+=.++..+.
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g--~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDG--NEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccc--ccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 44443447889999999999999998 2211110 000123444444444211 11 11 111223333343
Q ss_pred CCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccC-CcchHHHHHHHHHHH
Q psy2915 692 PKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLI 770 (883)
Q Consensus 692 ~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-~~niry~aL~~l~~l 770 (883)
-.+++...++++.+...+.++++.|+-.||..+-.+...+|. .+...-...+.+.+..|+.. ..++|--+...+.++
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe--~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE--ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH--HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 234555668899999999999999999999988777543332 22233333455555555554 556777777777888
Q ss_pred HhhC-chhHhh
Q psy2915 771 VQKR-PDILKH 780 (883)
Q Consensus 771 ~~~~-~~~~~~ 780 (883)
+.+. ++.+..
T Consensus 897 irkfg~~eLe~ 907 (1176)
T KOG1248|consen 897 IRKFGAEELES 907 (1176)
T ss_pred HHHhCHHHHHh
Confidence 7765 344443
No 103
>KOG0413|consensus
Probab=96.92 E-value=0.86 Score=54.39 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCC-CHHHHHHHHHHhcCCCh--hhhhHHHHHHHHhhcCCCChHHHhh
Q psy2915 524 ELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDS-NPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKT 600 (883)
Q Consensus 524 ~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~-n~~vr~~AL~~L~~i~~--~~~~~~l~~~l~~~l~d~~~~VRk~ 600 (883)
.++..+.+.++.+.-...+++.-.++.+.|.|+-. ...+|..-+-++|.+.. ..+.+-.+|.|..+|.|+++.|||-
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHH
Confidence 34555666666665555667776788888888754 46778877778888755 3488889999999999999999999
Q ss_pred HHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 601 AAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 601 A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
++.-+.++.+.+=-.+.-.-|+..+. -|-|.++.++.-|=-.+.++.+.
T Consensus 1026 t~ilL~rLLq~~~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1026 TIILLARLLQFGIVKWNGELFIRFML-ALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHhhhhhhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHHHhh
Confidence 99999998764322222111222222 33478999999998888888764
No 104
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.89 E-value=0.0045 Score=54.53 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=56.7
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccccc--ccHHHHHHHHhcCCChhHHHHHHHHHHhc
Q psy2915 145 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANAVAAILLL 217 (883)
Q Consensus 145 ~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~V~~~a~~~L~ei 217 (883)
..+..+.++++|.++++|+++.||-.|+.|++.+.+..++.+-. .+..+.|.++..|+|+.|+.+| ..|..+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 46777889999999999999999999999999998866544321 2345667778889999999888 445444
No 105
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.86 E-value=0.0027 Score=49.61 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHH
Q psy2915 560 PLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL 608 (883)
Q Consensus 560 ~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l 608 (883)
|.+|..|+.+||++.. ....+.+++.+..++.|+++.||.+|+.||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5678888888886631 235556777777788888888888888887653
No 106
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.80 E-value=0.025 Score=68.32 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=68.8
Q ss_pred hhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHH
Q psy2915 543 MAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFL 622 (883)
Q Consensus 543 ~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~ 622 (883)
....+.+.+.......+...+..+|++||+++.++..+.+.+.+..-- +.+..+|.+|+.|+.++....|+.+.
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~----- 560 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVR----- 560 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHH-----
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHH-----
Confidence 333444555555567788999999999999999887776555432221 34899999999999988777776653
Q ss_pred HHHHHhhc--CCChhHHHHHHHHHHHHH
Q psy2915 623 DQLKDLLS--DSNPMVVANAVAALSEMN 648 (883)
Q Consensus 623 ~~l~~lL~--D~d~~V~~~a~~~l~~i~ 648 (883)
+.+.+.+. .+++.||.+|+.+|.+..
T Consensus 561 ~~l~~I~~n~~e~~EvRiaA~~~lm~~~ 588 (618)
T PF01347_consen 561 EILLPIFMNTTEDPEVRIAAYLILMRCN 588 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhcC
Confidence 56666665 468899999998888764
No 107
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.76 E-value=0.4 Score=57.45 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHH--hhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhcc
Q psy2915 152 LCEPLRKCLKDEDPYVRKTAAVCVAKL--YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLP 218 (883)
Q Consensus 152 l~~~v~~~l~d~~~~VRk~A~~al~kl--~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~ 218 (883)
+++.+.++|...+..+.-.++..+-|+ +..+-+.+...+.++.|.+++..++..++..++.+|.-+.
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS 359 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS 359 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 334455556555665555555555554 2233333334455666666666666666666666655554
No 108
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.69 E-value=0.63 Score=53.83 Aligned_cols=133 Identities=14% Similarity=0.222 Sum_probs=89.6
Q ss_pred chHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCC
Q psy2915 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSN 129 (883)
Q Consensus 50 ~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n 129 (883)
.|-.|+....+ +...|+|+--++..|++.-|++.--++|+ +..=+.|.+
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a------------------------------~~DLcEDed 72 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINA------------------------------QLDLCEDED 72 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHH------------------------------HHHHHT-SS
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHH------------------------------HHHHHhccc
Confidence 35555555554 68899999999999999999999999999 777778899
Q ss_pred HHHHHHHHHHhccCC--chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHh--cCCChh
Q psy2915 130 PLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL--SDSNPM 205 (883)
Q Consensus 130 ~~vr~lALr~L~~i~--~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL--~D~d~~ 205 (883)
..||..|+|.|..++ .++.+.-+...+.++|...++..+..+=.++..+++.+|-.. +...+..++ ...|..
T Consensus 73 ~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~ 148 (556)
T PF05918_consen 73 VQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQ 148 (556)
T ss_dssp HHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HH
T ss_pred HHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchH
Confidence 999999999999886 467888888888888888887777777777777777766432 222233333 145667
Q ss_pred HHHHHHHHHHhc
Q psy2915 206 VVANAVAAILLL 217 (883)
Q Consensus 206 V~~~a~~~L~ei 217 (883)
|+-.++..|.+-
T Consensus 149 ~Re~~lkFl~~k 160 (556)
T PF05918_consen 149 VRERALKFLREK 160 (556)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 109
>KOG1949|consensus
Probab=96.69 E-value=0.15 Score=58.63 Aligned_cols=92 Identities=27% Similarity=0.368 Sum_probs=69.1
Q ss_pred ChhhhhHHHH-HHHHhhcCCCChHHHhhHHHHHHHHHh-hcccccc---c---ccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy2915 574 RVDKITEYLC-EPLRKCLKDEDPYVRKTAAVCVAKLYD-INAQLVE---D---QGFLDQLKDLLSDSNPMVVANAVAALS 645 (883)
Q Consensus 574 ~~~~~~~~l~-~~l~~~l~d~~~~VRk~A~~al~~l~~-~~~~~~~---~---~~~~~~l~~lL~D~d~~V~~~a~~~l~ 645 (883)
+.++|.-.+. |.+-+.|.-++..||..|+.-+..+|. .+|+.-. | .+-...+.+||.|+-|+||..|+.-++
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4455555544 788899999999999999999999887 4565511 0 122367888999999999999999999
Q ss_pred HHHhcCCCchhhHHhcHHH-HHHHHHH
Q psy2915 646 EMNEASTSGVALIEMNAQT-INKLLTA 671 (883)
Q Consensus 646 ~i~~~~~~~~~~~~l~~~~-~~~L~~~ 671 (883)
++.. .+|.++|+. +..+++.
T Consensus 246 k~~s------~fWe~iP~~i~~~ll~k 266 (1005)
T KOG1949|consen 246 KITS------KFWEMIPPTILIDLLKK 266 (1005)
T ss_pred HHHH------HHHHHcCHHHHHHHHHH
Confidence 9985 588888865 4444443
No 110
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.68 E-value=0.0013 Score=51.35 Aligned_cols=53 Identities=32% Similarity=0.381 Sum_probs=42.3
Q ss_pred hHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy2915 595 PYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEM 647 (883)
Q Consensus 595 ~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i 647 (883)
|.||..|+.+++++....++... .++.++.|..+|+|+++.||.+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 78999999999987665544433 135778888899999999999999998754
No 111
>KOG2274|consensus
Probab=96.52 E-value=2.9 Score=50.12 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=112.0
Q ss_pred hhHHHHHHHHhhcC-CCChHHHhhHHHHHHHHHhhcccccc-cccHHHHHHHhh-cCCChhHHHHHHHHHHHHHhcCCCc
Q psy2915 578 ITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQLVE-DQGFLDQLKDLL-SDSNPMVVANAVAALSEMNEASTSG 654 (883)
Q Consensus 578 ~~~~l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~~~~-~~~~~~~l~~lL-~D~d~~V~~~a~~~l~~i~~~~~~~ 654 (883)
....+...+...+. +..|..=-+|..++.++....+.... ...|.....+.+ .|..+-++.+|+.+++..++.
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---- 521 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---- 521 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----
Confidence 34444455555554 56777766899999877665332211 012333333333 488899999999999999843
Q ss_pred hhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH----HHHHHHhHh-hcC-CCh---HHHHHHHHHHH
Q psy2915 655 VALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ----SICERITPR-LAH-ANA---AVVLSAVKVLM 725 (883)
Q Consensus 655 ~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~----~il~~l~~~-l~~-~~~---aV~~eai~~i~ 725 (883)
+.+.++.|..++-+.....+...-.-..+++.|..-..-|++.+. .+.+....+ +.. ..+ ...-.+.+-++
T Consensus 522 ~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 522 KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL 601 (1005)
T ss_pred eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 457777888888888777777666666777777765554443332 333333332 222 233 22233444444
Q ss_pred HhhhhCCCChhhHHHHHHHhhhHHHHhccC-----CcchHHHHHHHHHHHHhhCch
Q psy2915 726 KLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-----EPEVQYVALRNINLIVQKRPD 776 (883)
Q Consensus 726 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-----~~niry~aL~~l~~l~~~~~~ 776 (883)
+.....++ ...++.|.++..+.. .+....+|++.+..++...|+
T Consensus 602 q~~~~~g~-------m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 602 QIAANYGP-------MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred HHHHhhcc-------hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 44333332 234566766666542 255788889999888887643
No 112
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.75 Score=51.87 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=55.7
Q ss_pred cCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q psy2915 555 CEDSNPLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS 632 (883)
Q Consensus 555 l~~~n~~vr~~AL~~L~~i--~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~ 632 (883)
.+|.|..||++|+.+||-+ .++..... .+.-+..+.+++||...+.+++-.+.-..+. ...+.|..|..|.
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~lv~---tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~ 633 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDLLVG---TVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDT 633 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcchhhH---HHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCc
Confidence 5677778888888888754 34433322 2222234567888887777777555433322 2346777777788
Q ss_pred ChhHHHHHHHHHHHHHh
Q psy2915 633 NPMVVANAVAALSEMNE 649 (883)
Q Consensus 633 d~~V~~~a~~~l~~i~~ 649 (883)
+..||++|..++.-|.-
T Consensus 634 ~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 634 NDFVRQSAMIAVGMILM 650 (926)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888777776654
No 113
>KOG0567|consensus
Probab=96.43 E-value=0.2 Score=51.35 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=69.8
Q ss_pred HHHHHhhcCCCC--HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHH
Q psy2915 548 VNTFVKDCEDSN--PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 625 (883)
Q Consensus 548 ~n~l~kdl~~~n--~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l 625 (883)
+..++.-+.|.+ -+.|-.|.-.|.++++.+-+.. +.+.+.++++..|-.++.++|++ ..|.. ++.+
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~a----l~~~l~~~SalfrhEvAfVfGQl--~s~~a------i~~L 223 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINA----LIDGLADDSALFRHEVAFVFGQL--QSPAA------IPSL 223 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHH----HHHhcccchHHHHHHHHHHHhhc--cchhh------hHHH
Confidence 455666666655 2557789999999998876664 56678888999999999999988 44444 3666
Q ss_pred HHhhc--CCChhHHHHHHHHHHHHHhc
Q psy2915 626 KDLLS--DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 626 ~~lL~--D~d~~V~~~a~~~l~~i~~~ 650 (883)
.+.|. .++|+||.-|+.+|+.|+..
T Consensus 224 ~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 224 IKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred HHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 66665 47899999999999999853
No 114
>KOG0168|consensus
Probab=96.40 E-value=0.47 Score=55.93 Aligned_cols=254 Identities=16% Similarity=0.166 Sum_probs=154.9
Q ss_pred HHHHHhhcCCC-CHHHHHHHHHHhcCC---Chhh-----hhHHHHHHHHhhcCCC-ChHHHhhHHHHHHHHHhhccccc-
Q psy2915 548 VNTFVKDCEDS-NPLIRALAVRTMGCI---RVDK-----ITEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQLV- 616 (883)
Q Consensus 548 ~n~l~kdl~~~-n~~vr~~AL~~L~~i---~~~~-----~~~~l~~~l~~~l~d~-~~~VRk~A~~al~~l~~~~~~~~- 616 (883)
.+.|...++.. +|..+.-|++-||.+ ++++ .++.++|.+..+++|+ ++.+---|+.|+..++...|...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 35566666666 889999999999954 4444 4567899999999975 78899999999999999888663
Q ss_pred --ccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC--
Q psy2915 617 --EDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS-- 691 (883)
Q Consensus 617 --~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~-- 691 (883)
.+.+.+|.|.+.|. =+-.+|-..++.+|..|.+..| ..++. ...+...+..++=..--.|...|-+....+
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34557777776554 5677899999999999987644 22221 111222222222233445777777777765
Q ss_pred --CCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhccCCc----chHHHH-
Q psy2915 692 --PKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLSSEP----EVQYVA- 763 (883)
Q Consensus 692 --~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~~~~----niry~a- 763 (883)
+.+..-.-+.++.|.+++++...-++-.+.-+++.+.+.+.+.++.++++.+ .++.-...|++..| +=-|.+
T Consensus 325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 3333333456778888898877755555666667776666666655555533 23332334444212 122333
Q ss_pred HHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhccccchhh
Q psy2915 764 LRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 814 (883)
Q Consensus 764 L~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~ 814 (883)
++.+..+..-.|..+..-++ ..|.....+++..-....|+..
T Consensus 405 Irmls~msS~~pl~~~tl~k---------~~I~~~L~~il~g~s~s~nas~ 446 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLK---------LDIADTLKRILQGYSKSANASL 446 (1051)
T ss_pred HHHHHHHccCChHHHHHHHH---------hhHHHHHHHHHhccCcCccccc
Confidence 34444444433544433111 1144445556666666666654
No 115
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.34 E-value=0.0055 Score=41.52 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhh
Q psy2915 152 LCEPLRKCLKDEDPYVRKTAAVCVAKLYD 180 (883)
Q Consensus 152 l~~~v~~~l~d~~~~VRk~A~~al~kl~~ 180 (883)
++|.+.++++|++|.||..|+.|++++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45778889999999999999999998865
No 116
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.19 E-value=0.28 Score=53.23 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=84.5
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHhcC--CChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc-ccccc---
Q psy2915 545 IMAVNTFVKDCEDSNPLIRALAVRTMGC--IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA-QLVED--- 618 (883)
Q Consensus 545 ~l~~n~l~kdl~~~n~~vr~~AL~~L~~--i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~-~~~~~--- 618 (883)
.+.-+-+...++++++.+|..|+++||- +-+.+++...++.+.+.+...++.||-.|+.++..+...++ +.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4455666678899999999999999984 56778888888888888876699999999999999887654 22221
Q ss_pred -------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 619 -------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 619 -------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
..+.+.+.+.+++.++.++..|+..++++.-.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 23566778888888999999999999998743
No 117
>KOG2274|consensus
Probab=96.19 E-value=4.3 Score=48.69 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=128.9
Q ss_pred hhhHhHHHHHHhhcCC-CCHHHHHHHHHHhcCCCh-----hhhhHHHHHHHHhh-cCCCChHHHhhHHHHHHHHHhhccc
Q psy2915 542 DMAIMAVNTFVKDCED-SNPLIRALAVRTMGCIRV-----DKITEYLCEPLRKC-LKDEDPYVRKTAAVCVAKLYDINAQ 614 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~-~n~~vr~~AL~~L~~i~~-----~~~~~~l~~~l~~~-l~d~~~~VRk~A~~al~~l~~~~~~ 614 (883)
+..--.++.+...+.. ..|..-.-|+-+++...+ +.+.+.++..-..+ ..|..+.+|-+|+.++.-.++..+-
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl 524 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL 524 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceec
Confidence 4444456666666654 457666677777775433 44555544433333 3589999999999988766543222
Q ss_pred ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhH--HhcHHHHHHHHHHcccCChhhHHHH-------HH
Q psy2915 615 LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI--EMNAQTINKLLTALNECTEWGQVFI-------LD 685 (883)
Q Consensus 615 ~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~--~l~~~~~~~L~~~l~~~~~w~qi~i-------L~ 685 (883)
.-..+.+++.+..+..+....|......+|+..++-+|+...-. ...|..+.-+++.- .+|.....+ ++
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s--~DP~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS--EDPQVASLAQDLFEELLQ 602 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 11124566777778888899999999999999998776432211 13333333333322 233222222 22
Q ss_pred HHhccCCCChHHHHHHHHHHhHhhcCCC----h---HHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhc--cCC
Q psy2915 686 SLSNYSPKDDREAQSICERITPRLAHAN----A---AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL--SSE 756 (883)
Q Consensus 686 lL~~~~~~~~~~~~~il~~l~~~l~~~~----~---aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll--~~~ 756 (883)
.-.+|+|. ....++.+.+.++.++ + ++....+.+++.-. | |.+-+..+..+.+++.... +.+
T Consensus 603 ~~~~~g~m----~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t---p--~pL~~~l~~~~FpaVak~tlHsdD 673 (1005)
T KOG2274|consen 603 IAANYGPM----QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT---P--SPLPNLLICYAFPAVAKITLHSDD 673 (1005)
T ss_pred HHHhhcch----HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC---C--CCccHHHHHHHhHHhHhheeecCC
Confidence 22224443 2356777777776555 3 45555555555542 2 2355566667777777654 345
Q ss_pred cchHHHHHHHHHHHHhhCc
Q psy2915 757 PEVQYVALRNINLIVQKRP 775 (883)
Q Consensus 757 ~niry~aL~~l~~l~~~~~ 775 (883)
.+.--+|=++|..++...+
T Consensus 674 ~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 674 HETLQNATECLRALISVTL 692 (1005)
T ss_pred hHHHHhHHHHHHHHHhcCH
Confidence 6666666677777766643
No 118
>KOG4413|consensus
Probab=96.03 E-value=1.7 Score=45.81 Aligned_cols=193 Identities=14% Similarity=0.167 Sum_probs=99.5
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHH
Q psy2915 356 QVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQL 435 (883)
Q Consensus 356 ~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~ 435 (883)
.|++.+.+|....|.++...++..|.+++ .||... ..+.+ ++..++. -++ +.-...+..+|...
T Consensus 128 eilklildcIggeddeVAkAAiesikria-lfpaal----eaiFe------SellDdl--hlr---nlaakcndiaRvRV 191 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAAL----EAIFE------SELLDDL--HLR---NLAAKCNDIARVRV 191 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHH----HHhcc------cccCChH--HHh---HHHhhhhhHHHHHH
Confidence 46677778888889999999999999988 344321 11111 0111100 011 11244567788888
Q ss_pred HHHHHHHhhcCCch-----HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhh-cCCchhh-hhhhhhHHHHHhhccCCCcc
Q psy2915 436 LTAIVKLFLKRPTD-----TQELVQQVLSLATQDSDNPDLRDRGFIYWRLL-STGNTFY-ILLHLTRLVIASMTVGKDVS 508 (883)
Q Consensus 436 L~al~Kl~~~~~~~-----~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll-~~~~~~~-~~~~~l~kli~~~~~g~~~~ 508 (883)
+..+.++++..|.. ...++..+....+.. .|.-|+..+.+.+.-+ ....... .-++++-.++-.+..|.+..
T Consensus 192 leLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 192 LELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred HHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCC
Confidence 89999998877642 233455555544443 3666777776544433 2222111 11244555555555555433
Q ss_pred cc-----hHHHHHhhcccchhHHHHHHHHHHhhccCC-chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh
Q psy2915 509 AL-----FPDVVNCMQTDNLELKKLVYLYLMNYAKSH-PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV 575 (883)
Q Consensus 509 ~~-----~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~-~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~ 575 (883)
++ ++.-.+++.. .++.....+. -+-...++..-..-+...+|.....|+.++|.+++
T Consensus 271 Pfekfralmgfgkffgk----------eaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 271 PFEKFRALMGFGKFFGK----------EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred cHHHHHHHHHHHHHhcc----------hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 22 1111222211 1111100000 01112223333344566788889999999998866
No 119
>KOG1293|consensus
Probab=96.03 E-value=4.2 Score=47.14 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=68.3
Q ss_pred hhcCCCCHHHHHHHHHHhcCC----Chh--h-hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc----ccH
Q psy2915 553 KDCEDSNPLIRALAVRTMGCI----RVD--K-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED----QGF 621 (883)
Q Consensus 553 kdl~~~n~~vr~~AL~~L~~i----~~~--~-~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~----~~~ 621 (883)
+-+.+|..+|...++.+++++ +++ . +....+..+.+.+.++++.+|+.+...+.++.-...+.... .-.
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~ 505 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP 505 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh
Confidence 334578888888888888876 221 1 23335667778889999999999999998764333222210 113
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 622 LDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 622 ~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
...+..+.+|+|+.|+..+..++-.+..+
T Consensus 506 a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 506 ANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 34556677899999999999999998754
No 120
>KOG4653|consensus
Probab=95.84 E-value=0.35 Score=57.12 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCCh
Q psy2915 389 QSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNP 468 (883)
Q Consensus 389 ~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~ 468 (883)
|.....+..+.+++.+.+.........++..+.+.+.++++.|-+.++..++-+...+|+ .+++.+.....+..+.+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e---~il~dL~e~Y~s~k~k~ 818 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE---DILPDLSEEYLSEKKKL 818 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch---hhHHHHHHHHHhcccCC
Confidence 333445555566666544444444556777888888899999988888877777666653 34555555433322222
Q ss_pred --hhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh
Q psy2915 469 --DLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM 546 (883)
Q Consensus 469 --evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l 546 (883)
|-|-+.+ |++-+++.. .|=+..+. ...
T Consensus 819 ~~d~~lkVG----------------Eai~k~~qa---------------------------~Gel~~~y--------~~~ 847 (982)
T KOG4653|consen 819 QTDYRLKVG----------------EAILKVAQA---------------------------LGELVFKY--------KAV 847 (982)
T ss_pred CccceehHH----------------HHHHHHHHH---------------------------hccHHHHH--------HHH
Confidence 3332222 222222222 11111111 124
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCC------ChhhhhHHHHHHHHhhc-CCCChHHHhhHHHHHHHHHhhcccc-ccc
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCI------RVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQL-VED 618 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i------~~~~~~~~l~~~l~~~l-~d~~~~VRk~A~~al~~l~~~~~~~-~~~ 618 (883)
+++++.+...+|+...|+.++..+|.+ +..+..-.+..-|.... .|.++.|||+|+.-+..+.+--.+. .+-
T Consensus 848 Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 848 LINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI 927 (982)
T ss_pred HHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence 678888888999888999998888864 22333333333333333 5999999999999998776532222 110
Q ss_pred c-----cHHHHHHHhhc-CCChhHHHHHHHHHHHHH
Q psy2915 619 Q-----GFLDQLKDLLS-DSNPMVVANAVAALSEMN 648 (883)
Q Consensus 619 ~-----~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~ 648 (883)
. +....+..... ++|-+++..|...+.++-
T Consensus 928 lr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 928 LRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 0 11111222222 556667777777776664
No 121
>KOG4413|consensus
Probab=95.73 E-value=3.4 Score=43.75 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=53.9
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcc-c------cccccHHHHHHHHhcCCChhHHHHHHHHHHhc
Q psy2915 145 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ-L------VEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217 (883)
Q Consensus 145 ~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~-~------~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei 217 (883)
...+++.+.+.+++++.+++..|+--|+..++.+...+-. . +.+.+..+.+...+..+|..|..+|+..+..+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999988888764321 1 11223334444444578888998888888887
Q ss_pred ccc
Q psy2915 218 PRK 220 (883)
Q Consensus 218 ~~~ 220 (883)
...
T Consensus 156 alf 158 (524)
T KOG4413|consen 156 ALF 158 (524)
T ss_pred Hhc
Confidence 643
No 122
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.48 E-value=6.3 Score=45.08 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCC--chhhHHhc
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTS--GVALIEMN 661 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~--~~~~~~l~ 661 (883)
..|..++.+..|.+|.+++.++.-.+-.+-....+. .+.+..+...++.....-|+..+..+...... ...+-+++
T Consensus 533 tlI~Pavrn~a~~IrE~gve~L~l~clldv~La~~n--~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~g~~k~ds~l 610 (885)
T COG5218 533 TLILPAVRNSAPNIRETGVEILELGCLLDVALARPN--HAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDEGEGKLDSLL 610 (885)
T ss_pred HHhhhhhccCCCchhhhhhhhhhhhhhhhHhhcCCc--hHHHHHHHhccchhHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 344556678899999999999987776655554432 37778888889999999999998888754221 12244456
Q ss_pred HHHHHHHHHHcccCChhhHHHHHHHHhcc
Q psy2915 662 AQTINKLLTALNECTEWGQVFILDSLSNY 690 (883)
Q Consensus 662 ~~~~~~L~~~l~~~~~w~qi~iL~lL~~~ 690 (883)
+..+.+.++-+. ++-.|..+..-|.++
T Consensus 611 ~~Il~~~l~~~e--~~E~q~i~aegl~Kl 637 (885)
T COG5218 611 GDILRHILQGLE--TKERQDIIAEGLSKL 637 (885)
T ss_pred HHHHHHHHhccC--chhHHHHhhhHHHHH
Confidence 666777666443 444555555554443
No 123
>KOG1820|consensus
Probab=95.31 E-value=0.4 Score=58.16 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=143.2
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc-cccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA-QLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~-~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.++..-+.+.+...+.|++|-=|+.|+..+......-+ +... ...+...+.-.+.|.|..|...|+..+..|+...+
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 34455556678888899999999999999999887655 2211 01122233344569999999999999999997644
Q ss_pred CchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCC
Q psy2915 653 SGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLP 732 (883)
Q Consensus 653 ~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~ 732 (883)
..+..+....+..++..+.+.-+.+.--+++++..+..... ..++.+.+...+.+.|+.+.-+|...+......++
T Consensus 328 --~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 328 --PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred --hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 33666677777788888888777777777777777665322 34778899999999999999999888877754444
Q ss_pred CChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch
Q psy2915 733 GEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD 776 (883)
Q Consensus 733 ~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~ 776 (883)
+. ......+..+.+.++...+ ++.++|-+++..+..+...+.+
T Consensus 404 ~~-~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 404 PK-TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred Cc-CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 22 2234556677777777664 6889999999999998887744
No 124
>KOG1525|consensus
Probab=95.31 E-value=3.8 Score=52.22 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHhhh
Q psy2915 701 ICERITPRLAHANAAVVLSAVKVLMKLME 729 (883)
Q Consensus 701 il~~l~~~l~~~~~aV~~eai~~i~~~~~ 729 (883)
++..+..++++.-.-|+.+|++.+.+++.
T Consensus 377 ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 377 LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 56667777888888899999999988874
No 125
>KOG0946|consensus
Probab=95.19 E-value=5 Score=47.49 Aligned_cols=279 Identities=16% Similarity=0.200 Sum_probs=160.0
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcC-CChhHHHHHHHHHHHHHhcCC------Cch--------
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSD-SNPMVVANAVAALSEMNEAST------SGV-------- 655 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D-~d~~V~~~a~~~l~~i~~~~~------~~~-------- 655 (883)
+..-+.=||.|+.++-.+.+.+...+....+-+.+..|=.| .|+.....++..++-+..++. +..
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ 112 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLW 112 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHH
Confidence 45567778999999988888888877755554444444446 588899999998888876542 111
Q ss_pred --hhHHhcHHHHHHHHHHcccCCh---hhHHHHHHHHhccCCCChHHHH----HHHHHHhHhhcCCChHHHHHHHHHHHH
Q psy2915 656 --ALIEMNAQTINKLLTALNECTE---WGQVFILDSLSNYSPKDDREAQ----SICERITPRLAHANAAVVLSAVKVLMK 726 (883)
Q Consensus 656 --~~~~l~~~~~~~L~~~l~~~~~---w~qi~iL~lL~~~~~~~~~~~~----~il~~l~~~l~~~~~aV~~eai~~i~~ 726 (883)
+.+-..+..+.-++..+...+- |.-++++..+....|..-..+- .-+..+..++.++...|+-+++-.++.
T Consensus 113 iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~e 192 (970)
T KOG0946|consen 113 IAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSE 192 (970)
T ss_pred HHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHH
Confidence 0112333445555555554443 4444444444444443222211 224566677888888999999999988
Q ss_pred hhhhCCCChhhHH-HHHHHhhhHHHHhccCCcchH--HHHHHHHHHHHh---hC---chhHhh--c------cceeEEcc
Q psy2915 727 LMEMLPGEGDFVS-TLTKKLAPPLVTLLSSEPEVQ--YVALRNINLIVQ---KR---PDILKH--E------MKVFFVKY 789 (883)
Q Consensus 727 ~~~~~~~~~~l~~-~~~~~~~~~L~~ll~~~~nir--y~aL~~l~~l~~---~~---~~~~~~--~------~~~~~~l~ 789 (883)
+.. ..+.+.. -+...+..-|..++..+++++ .++.++|..+.. .+ -++|.+ | +-..+...
T Consensus 193 L~k---~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~ 269 (970)
T KOG0946|consen 193 LVK---DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFG 269 (970)
T ss_pred HHc---cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccccc
Confidence 852 2222211 123344444455666666543 466666555433 22 334542 2 21222333
Q ss_pred CC---CHHHHH-----HHHHHHHHhccccchhh---------------------------hhHHHHHHHHHHHHHHhhC-
Q psy2915 790 ND---PIYVKL-----EKLDIMIRLASQANIAQ---------------------------VNYVVQEAIVVIKDIFRKY- 833 (883)
Q Consensus 790 ~d---d~~Ir~-----~~l~lL~~l~~~~N~~~---------------------------~~~~~~e~i~~i~~l~~~~- 833 (883)
++ -|+=.| .+|.++-.++.++|-.. ...+..|.+..+++.++-.
T Consensus 270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 270 DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNA 349 (970)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence 32 455444 57888889999888754 0123334444444444322
Q ss_pred --------------CCchHHHHHHHHhhcccCCcHHHHHHHHHHHhcCcCccC
Q psy2915 834 --------------PNKYETIISTLCENLDTLDEPEARASMIWIIGEYAERID 872 (883)
Q Consensus 834 --------------p~~~~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~ 872 (883)
|+-+..++.-+..+...-.-+.-|+|+.+++--|--..+
T Consensus 350 ~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 350 RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 333555666666666666778899999999887765544
No 126
>KOG1949|consensus
Probab=95.18 E-value=0.12 Score=59.25 Aligned_cols=175 Identities=21% Similarity=0.203 Sum_probs=110.8
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhh--------hHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccc
Q psy2915 546 MAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDKI--------TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ 614 (883)
Q Consensus 546 l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~~--------~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~ 614 (883)
+.-+.+-+.|+-+|..||..|+..+-+. .+|+. .+.=...+.++|.|+-|.||..|+..+.++...+=+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3445666889999999999999987753 33332 222235678899999999999999999998876544
Q ss_pred ccccccHHHHHHH----hhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHc----ccCChhhHHHHHHH
Q psy2915 615 LVEDQGFLDQLKD----LLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL----NECTEWGQVFILDS 686 (883)
Q Consensus 615 ~~~~~~~~~~l~~----lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l----~~~~~w~qi~iL~l 686 (883)
.++...+.+.+.. +-.|.-.+||.+....+.++..+ |. .++.+..++..+ .+..+-.++...++
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~-------sh~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PL-------SHPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-cc-------chhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 4443223333333 33477889999999999999865 32 334444444433 24455555555555
Q ss_pred HhccCCCChHHHHHH--HHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 687 LSNYSPKDDREAQSI--CERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 687 L~~~~~~~~~~~~~i--l~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
|.++.....-...++ ++.+...|...|..|-..-+..|++.+
T Consensus 326 ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 326 LLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 555433222112222 245556667777777777777776664
No 127
>KOG0891|consensus
Probab=95.15 E-value=12 Score=50.80 Aligned_cols=247 Identities=19% Similarity=0.211 Sum_probs=138.1
Q ss_pred HHHHHHHhccCCch--hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccc---c-----ccHHHHHHH-HhcC
Q psy2915 133 RALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE---D-----QGFLDQLKD-LLSD 201 (883)
Q Consensus 133 r~lALr~L~~i~~~--~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~---~-----~~~~~~L~~-lL~D 201 (883)
-.+|+++++.+... .....+...+...+++.++-+||.|+++++.+++..+-.-+ . ......+.. .+.|
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccC
Confidence 66899999998764 45555666677788999999999999999999886554100 0 011122222 2348
Q ss_pred CChhHHHHHHHHHHhccccCCccccccccccCCCCcH---HHHHh--hcccccc-----CCCCCCCchH---HHHHHHHH
Q psy2915 202 SNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNL---PYLMN--LSVIYPA-----WPLSTINPHT---PLLKVLMK 268 (883)
Q Consensus 202 ~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q---~~~l~--l~~~~~~-----~~l~~~n~~v---~~~~~l~~ 268 (883)
+||.++...+..+.+-...+-.. +|.. ...++ +..+.+. .++.+.||+. +..+..+.
T Consensus 541 ~~~~i~~~v~~~l~~~~~~~laQ----------~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~ 610 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLNERFDAQLAQ----------PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE 610 (2341)
T ss_pred CCcchhhhHHhhhccchhhhhcC----------chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH
Confidence 88888888887777322111000 1111 11111 1111110 0234444543 22233333
Q ss_pred HhhcCCCCh----------------hhHHHHHHHHhHHHHHhh-----cCChhHHHHHHHHHHHHHhhCchhHHhcccce
Q psy2915 269 LMEMLPGEG----------------DFVSTLTKKLAPPLVTLL-----SSEPEVQYVALRNINLIVQKRPDILKHEMKVF 327 (883)
Q Consensus 269 l~~~~~~~~----------------~~~~~~~~~~~~~L~~lL-----~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~ 327 (883)
+.+.+..+. .....++...+.++..-+ +.++.+--.++..+.+++......+....+-+
T Consensus 611 ~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~ 690 (2341)
T KOG0891|consen 611 LLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDEL 690 (2341)
T ss_pred HhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchH
Confidence 322221110 000113333333333322 23456777889999999998875553333322
Q ss_pred eec------cCCCHHHHHHHHHHHHHhcChhhH--------HHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHhhchh
Q psy2915 328 FVK------YNDPIYVKLEKLDIMIRLASQANI--------AQVLSELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQ 389 (883)
Q Consensus 328 ~~l------~~~~~~Ir~~aL~iL~~l~~~~nv--------~~Il~eL~~~~-~~~d~~~r~~ai~aI~~la~k~~~ 389 (883)
+++ .......|+.++..+++++.++.+ +.+++.|.+.+ +.....+|+++++.+|.++...|.
T Consensus 691 ~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 691 FSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred HHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 222 223344788889999999987665 44666666664 445677999999999988865554
No 128
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.12 E-value=0.43 Score=47.19 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=86.2
Q ss_pred HHhhHHHHHHHHHhh-cccc--------ccc------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhc
Q psy2915 597 VRKTAAVCVAKLYDI-NAQL--------VED------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMN 661 (883)
Q Consensus 597 VRk~A~~al~~l~~~-~~~~--------~~~------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~ 661 (883)
||..|+.|+..+.+. ++.. +++ +.-...+.-++.|+++.||.+|+.++..+.... +.++.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---k~~L~-- 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---KPFLA-- 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc---HHHHH--
Confidence 566666666666654 2221 111 123355666788999999999999999998641 22211
Q ss_pred HHHHHHHHHHcc----cCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCC-ChHHHHHHHHHHHHhhhhCCCChh
Q psy2915 662 AQTINKLLTALN----ECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHA-NAAVVLSAVKVLMKLMEMLPGEGD 736 (883)
Q Consensus 662 ~~~~~~L~~~l~----~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~-~~aV~~eai~~i~~~~~~~~~~~~ 736 (883)
..+.-. ...++.... ..-..++-..+...+++. +.+++.++.+++..+....|= +.
T Consensus 77 ------~Ae~~~~~~~sFtslS~tL------------a~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY-~r 137 (182)
T PF13251_consen 77 ------QAEESKGPSGSFTSLSSTL------------ASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY-HR 137 (182)
T ss_pred ------HHHhcCCCCCCcccHHHHH------------HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh-hh
Confidence 111000 111111111 000113445555556554 558888888888777533321 12
Q ss_pred hHHHHHHHhhhHHHHhc-cCCcchHHHHHHHHHHHHhhCc
Q psy2915 737 FVSTLTKKLAPPLVTLL-SSEPEVQYVALRNINLIVQKRP 775 (883)
Q Consensus 737 l~~~~~~~~~~~L~~ll-~~~~niry~aL~~l~~l~~~~~ 775 (883)
+....+..++..+..++ ++|+|++-.++..+..++...+
T Consensus 138 L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 138 LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 22333444444444444 4799999999999999887654
No 129
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.08 E-value=11 Score=45.55 Aligned_cols=234 Identities=19% Similarity=0.237 Sum_probs=135.4
Q ss_pred chHHHHHhhcccchhHHHHHHHHHHhhc---cCCchhh-HhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh-hhhhHH---
Q psy2915 510 LFPDVVNCMQTDNLELKKLVYLYLMNYA---KSHPDMA-IMAVNTFVKDCEDSNPLIRALAVRTMGCIRV-DKITEY--- 581 (883)
Q Consensus 510 ~~~~vi~ll~s~~~~~kr~~yl~~~~~~---~~~~~~~-~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~-~~~~~~--- 581 (883)
.+..+++++.+++..+.-.+..++..+. ..+.++. .-++..+.|.+.++++..+..|++.|.++.- ++..+.
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~ 370 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVS 370 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3555677787777777666666666553 2222222 2277889999999999999999999998833 333333
Q ss_pred --HHHHHHhhcCCCChHHHhhHHHHHHHHHhh--cccccccccHHHHHHHhh-cCCChhHHHHHHHHHHHHHhcCCCchh
Q psy2915 582 --LCEPLRKCLKDEDPYVRKTAAVCVAKLYDI--NAQLVEDQGFLDQLKDLL-SDSNPMVVANAVAALSEMNEASTSGVA 656 (883)
Q Consensus 582 --l~~~l~~~l~d~~~~VRk~A~~al~~l~~~--~~~~~~~~~~~~~l~~lL-~D~d~~V~~~a~~~l~~i~~~~~~~~~ 656 (883)
++|.+..++.|++ .|..|...++++... ....+...+.++.+.+++ ..+++.+...++.++..++...+..+.
T Consensus 371 ~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaql 448 (708)
T PF05804_consen 371 LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQL 448 (708)
T ss_pred CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHH
Confidence 5578888887654 444555555555432 122233334567776655 456777777777777777765332221
Q ss_pred hHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHH---HHHHHHHHhHhhcC-CChHHHHHHHHHHHHhhhhCC
Q psy2915 657 LIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDRE---AQSICERITPRLAH-ANAAVVLSAVKVLMKLMEMLP 732 (883)
Q Consensus 657 ~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~---~~~il~~l~~~l~~-~~~aV~~eai~~i~~~~~~~~ 732 (883)
..+ -.-+..|++.. -.|-...+++++......++.. ..+++..+...+.+ .+.....||+-++.++..
T Consensus 449 m~~--g~gL~~L~~ra---~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--- 520 (708)
T PF05804_consen 449 MCE--GNGLQSLMKRA---LKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI--- 520 (708)
T ss_pred HHh--cCcHHHHHHHH---HhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc---
Confidence 111 01122333322 1233344566666665444322 23445555555554 466999999999988841
Q ss_pred CChhhHHHHHH--HhhhHHHHhcc
Q psy2915 733 GEGDFVSTLTK--KLAPPLVTLLS 754 (883)
Q Consensus 733 ~~~~l~~~~~~--~~~~~L~~ll~ 754 (883)
++.+. .++++ .+.+.+..++.
T Consensus 521 ~~ld~-~~ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 521 PDLDW-AQLLQEYNLLPWLKDLLK 543 (708)
T ss_pred CCcCH-HHHHHhCCHHHHHHHHhC
Confidence 11122 33333 56676777765
No 130
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=95.06 E-value=0.55 Score=52.68 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=64.5
Q ss_pred HHHHHhccCCCChHHHHHHHHHHhHh---h-cCCC-hHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc---
Q psy2915 683 ILDSLSNYSPKDDREAQSICERITPR---L-AHAN-AAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS--- 754 (883)
Q Consensus 683 iL~lL~~~~~~~~~~~~~il~~l~~~---l-~~~~-~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~--- 754 (883)
.+++|..++..|++-.....+.+.++ + .+.+ ..++...++.+.+.++..--+ .+...+.... .+++
T Consensus 10 aV~iLd~lC~~d~s~v~r~~p~ik~l~~R~~~~~~~~~~lL~i~qFfL~hge~~~~d---~e~~~~~~F~---~~l~~~f 83 (459)
T PF14764_consen 10 AVRILDVLCRQDPSLVYRVFPCIKRLFGRLASDLSSARVLLPIAQFFLNHGEAAAVD---SEPVLQHFFT---SVLSRLF 83 (459)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHccChHhhcC---hHHHHHHHHH---HhhHHhc
Confidence 33444445555555444444444332 2 2333 367888888887774322111 1122222111 2222
Q ss_pred CCcchHHHHH----HHHHHHHhhCchhHhhccce-eEEccCCCHHHHHHHHHHHHHhccccchhh
Q psy2915 755 SEPEVQYVAL----RNINLIVQKRPDILKHEMKV-FFVKYNDPIYVKLEKLDIMIRLASQANIAQ 814 (883)
Q Consensus 755 ~~~niry~aL----~~l~~l~~~~~~~~~~~~~~-~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~ 814 (883)
.+|-+-+-.+ +++ .+...+++++..+.+. |-++.-+++.....=+++|+.|.++++.-+
T Consensus 84 ~dp~lA~e~~~F~~~N~-~~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~E 147 (459)
T PF14764_consen 84 HDPFLAFETLQFCRDNL-KLLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVE 147 (459)
T ss_pred CChHHHHHHHHHHHHHH-HHHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHH
Confidence 2333322222 222 2333446667777743 445666678888888888888888888755
No 131
>KOG1525|consensus
Probab=94.92 E-value=16 Score=46.77 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=100.2
Q ss_pred HHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcc
Q psy2915 441 KLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQT 520 (883)
Q Consensus 441 Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s 520 (883)
++|...|...-.+++++..+...+ +.++|-.|....+.+-.++... .+......+..-+..+.+
T Consensus 248 ~L~~~~p~ll~~vip~l~~eL~se--~~~~Rl~a~~lvg~~~~~~~~~--------------l~~~~~~~~~~fl~r~~D 311 (1266)
T KOG1525|consen 248 ELWRIAPQLLLAVIPQLEFELLSE--QEEVRLKAVKLVGRMFSDKDSQ--------------LSETYDDLWSAFLGRFND 311 (1266)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhcchhh--------------hcccchHHHHHHHHHhcc
Confidence 344444444555666666666665 6888888875554443332111 122234445555666777
Q ss_pred cchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh----hhHHHHHHHHhhcCCCChH
Q psy2915 521 DNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDK----ITEYLCEPLRKCLKDEDPY 596 (883)
Q Consensus 521 ~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~----~~~~l~~~l~~~l~d~~~~ 596 (883)
.+..+|-.+--....+.-.+|+...-.+..+..-..+.++.+|..-.-.+......+ +.+.++..+...+.|+.|.
T Consensus 312 ~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~ 391 (1266)
T KOG1525|consen 312 ISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIK 391 (1266)
T ss_pred CChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHH
Confidence 777777666555666555556554443333333334555555433332222221111 2222667788888999999
Q ss_pred HHhhHHHHHHHHHhh-c-------ccccccccHH-HHHHHhhcCCChhHH
Q psy2915 597 VRKTAAVCVAKLYDI-N-------AQLVEDQGFL-DQLKDLLSDSNPMVV 637 (883)
Q Consensus 597 VRk~A~~al~~l~~~-~-------~~~~~~~~~~-~~l~~lL~D~d~~V~ 637 (883)
||+.|+..+.++|+. + ........|+ ..+..++.+.+..-|
T Consensus 392 VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 392 VRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 999999999999994 1 1111122333 345566666655555
No 132
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.78 E-value=0.65 Score=45.48 Aligned_cols=125 Identities=16% Similarity=0.304 Sum_probs=84.9
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHH
Q psy2915 619 QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREA 698 (883)
Q Consensus 619 ~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 698 (883)
.+|...+.++|.++++.-|..++.++...+++.+ ...+.+ ...+|.+
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~------------~e~l~~---~~~~W~~------------------ 70 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS------------WEILLS---HGSQWLR------------------ 70 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh------------HHHHHH---HHHHHHH------------------
Confidence 4688999999999999999999999999987521 112222 2344554
Q ss_pred HHHHHHHhHhhcC-CChHHHHHHHHHHHHhhhhCCCChhhHHHHH----HHhhhHHHHhccCCcchHHHHHHHHHHHHhh
Q psy2915 699 QSICERITPRLAH-ANAAVVLSAVKVLMKLMEMLPGEGDFVSTLT----KKLAPPLVTLLSSEPEVQYVALRNINLIVQK 773 (883)
Q Consensus 699 ~~il~~l~~~l~~-~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~----~~~~~~L~~ll~~~~niry~aL~~l~~l~~~ 773 (883)
.+.+.+++ .+..++-.|+.++..+.....+.|++..+.. ..++..++.++++ +...-.+++.+..+...
T Consensus 71 -----~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 71 -----ALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPH 144 (165)
T ss_pred -----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 22333333 3346777888888888777777777654442 2333444444443 56677899999999999
Q ss_pred CchhHhhcc
Q psy2915 774 RPDILKHEM 782 (883)
Q Consensus 774 ~~~~~~~~~ 782 (883)
+|..+.+|.
T Consensus 145 ~ptt~rp~~ 153 (165)
T PF08167_consen 145 HPTTFRPFA 153 (165)
T ss_pred CCccccchH
Confidence 999988865
No 133
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.47 E-value=2.1 Score=51.69 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=64.5
Q ss_pred hcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCC---CHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC--C
Q psy2915 518 MQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDS---NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK--D 592 (883)
Q Consensus 518 l~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~---n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~--d 592 (883)
....+...+.+...+++..+.. .+++.+.+-+.+. ...+|.+|+.+|..+... ..+.+.+.+.+... .
T Consensus 499 ~~~~~~~~~~~~LkaLgN~g~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 499 VSRGDEEEKIVYLKALGNLGHP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-CPEKVREILLPIFMNTT 571 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHT-G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TT
T ss_pred hhccCHHHHHHHHHHhhccCCc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-CcHHHHHHHHHHhcCCC
Confidence 3344555555555667776643 2556677766666 689999999999966221 12223333334443 4
Q ss_pred CChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHH
Q psy2915 593 EDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS-DSNPMVVANAVAAL 644 (883)
Q Consensus 593 ~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l 644 (883)
.++.||-+|+..+.+ ..|.. .++..+...+. |+++.|.....+.|
T Consensus 572 e~~EvRiaA~~~lm~---~~P~~----~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 572 EDPEVRIAAYLILMR---CNPSP----SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp S-HHHHHHHHHHHHH---T---H----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHh---cCCCH----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 578899999988864 33443 24466666664 88888877666544
No 134
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.44 E-value=0.58 Score=46.89 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=71.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhh--HHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHH
Q psy2915 548 VNTFVKDCEDSNPLIRALAVRTMGCIRVDKIT--EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 625 (883)
Q Consensus 548 ~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~--~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l 625 (883)
.+.+.+-+.+++..+|..|++.+..+....+. ...+|.+..+..|+++.+|+.|...+..++.++|+.+. ..+.+-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~-~~~~~gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE-SRYSEGI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 34566677899999999999999976443333 33668888889999999999999999999999998875 3344443
Q ss_pred HHh------h-cCCChhH---HHHHHHHHHHHHh
Q psy2915 626 KDL------L-SDSNPMV---VANAVAALSEMNE 649 (883)
Q Consensus 626 ~~l------L-~D~d~~V---~~~a~~~l~~i~~ 649 (883)
... + .|..... ..+.+..+..+..
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 332 2 2322222 5666666777765
No 135
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.38 E-value=3.1 Score=45.15 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHh--cChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHh-hh
Q psy2915 332 NDPIYVKLEKLDIMIRL--ASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKY-AE 408 (883)
Q Consensus 332 ~~~~~Ir~~aL~iL~~l--~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~-~~ 408 (883)
+++..||..+++.|+.. .+.+....-+.-+.+.+...+++++..++++|..+...|+... +...- ++
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~----------~~~~~~~~ 107 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI----------FDSESDND 107 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh----------ccchhccC
Confidence 33444555555544332 2444444444555555544577888888888888877665321 00000 00
Q ss_pred hhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchH-HHHHHHHHHHhhcCC--CChhhhhhhHHHHHhhcCC
Q psy2915 409 RIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDT-QELVQQVLSLATQDS--DNPDLRDRGFIYWRLLSTG 484 (883)
Q Consensus 409 ~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~-~~~l~~ll~~~~~d~--~~~evrdrA~~y~~ll~~~ 484 (883)
.-.....+++.+.+.+..+++++|..+...++|++..+.-.. ..++..++-..-+.. ++..+|+--..+++.....
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 011234566666666777788999999999999987654344 566666655433321 2456776666666665444
No 136
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.36 E-value=0.26 Score=58.93 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=74.0
Q ss_pred hchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhc
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS 200 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~ 200 (883)
+.+..+..+...+-++|++||+++.|..+..+.+.+. +-...++++|..|+.|+-++...+|+.+. +.+.++..
T Consensus 451 l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~~i~~ 524 (574)
T smart00638 451 LQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLLPIYL 524 (574)
T ss_pred HHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHc
Confidence 3444556677888999999999999999998887764 33455789999999999999888887764 45666554
Q ss_pred --CCChhHHHHHHHHHHhccc
Q psy2915 201 --DSNPMVVANAVAAILLLPR 219 (883)
Q Consensus 201 --D~d~~V~~~a~~~L~ei~~ 219 (883)
+.++.||.+|+.+|.+..+
T Consensus 525 n~~e~~EvRiaA~~~lm~t~P 545 (574)
T smart00638 525 NRAEPPEVRMAAVLVLMETKP 545 (574)
T ss_pred CCCCChHHHHHHHHHHHhcCC
Confidence 5799999999999998754
No 137
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.26 E-value=0.32 Score=42.37 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=40.5
Q ss_pred hhcCCCChHHHhhHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 588 KCLKDEDPYVRKTAAVCVAKLYDINA-QLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 588 ~~l~d~~~~VRk~A~~al~~l~~~~~-~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.-+.|+.+.||-.|+.-+.++.+... .....+.....+.+.|.|+|+-|-.+|+..+..++...|
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 34456666666666666666665444 223233455666667777777777777777777776543
No 138
>KOG1517|consensus
Probab=94.11 E-value=1.2 Score=53.87 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=107.0
Q ss_pred hCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHH-----HHHHhh-cCCCChhhhhhhHHHHHhhcC
Q psy2915 410 IDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQ-----VLSLAT-QDSDNPDLRDRGFIYWRLLST 483 (883)
Q Consensus 410 i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~-----ll~~~~-~d~~~~evrdrA~~y~~ll~~ 483 (883)
++-.||+|..+ .....+.|..++---+|+....++.-.+++.. +++... ++.-++|-|..|.|.++.+..
T Consensus 511 VGIFPYVLKLL----QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 511 VGIFPYVLKLL----QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred cchHHHHHHHh----ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 34455555544 22334445555555566666555533333333 111111 122355777777877776654
Q ss_pred CchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhccc-chhHHHHHHHHHHhhccCCch-----hhHhHHHHHHhhcCC
Q psy2915 484 GNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTD-NLELKKLVYLYLMNYAKSHPD-----MAIMAVNTFVKDCED 557 (883)
Q Consensus 484 ~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~-~~~~kr~~yl~~~~~~~~~~~-----~~~l~~n~l~kdl~~ 557 (883)
+-..++ .+++. -++...+.+.+.++ .+-+|.-+.+.++.++..-++ ....+...+...+.|
T Consensus 587 nf~lGQ-~acl~------------~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD 653 (1387)
T KOG1517|consen 587 NFKLGQ-KACLN------------GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD 653 (1387)
T ss_pred ccchhH-HHhcc------------ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC
Confidence 421110 00010 12334446667664 577788889999888655433 334566677788899
Q ss_pred CCHHHHHHHHHHhcCCChh------h----------------hhHHHHH----HHHhhcCCCChHHHhhHHHHHHHHHhh
Q psy2915 558 SNPLIRALAVRTMGCIRVD------K----------------ITEYLCE----PLRKCLKDEDPYVRKTAAVCVAKLYDI 611 (883)
Q Consensus 558 ~n~~vr~~AL~~L~~i~~~------~----------------~~~~l~~----~l~~~l~d~~~~VRk~A~~al~~l~~~ 611 (883)
+-|.||++|+-+||.+-+. | ..+..+. .+..+++|.+|.||+..+.++.++..-
T Consensus 654 ~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 654 PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 9999999999999965221 1 1222222 555667888888888888888776543
Q ss_pred c
Q psy2915 612 N 612 (883)
Q Consensus 612 ~ 612 (883)
+
T Consensus 734 ~ 734 (1387)
T KOG1517|consen 734 Y 734 (1387)
T ss_pred h
Confidence 3
No 139
>KOG0413|consensus
Probab=94.07 E-value=3.1 Score=49.94 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=83.1
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc-ccc
Q psy2915 547 AVNTFVKDCE-DSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE-DQG 620 (883)
Q Consensus 547 ~~n~l~kdl~-~~n~~vr~~AL~~L~~i----~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~-~~~ 620 (883)
++-.|.+.++ ++-..++..|.+.+-++ ....+.+.++..++.+.+|+-..|||+++.++.++....|..+. ...
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~ 656 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSK 656 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHH
Confidence 4455566665 44456888888877765 33557777788888899999999999999999999999998874 346
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 621 FLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 621 ~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
|.-.+..++.|.+..|...|...+.+...
T Consensus 657 wl~~li~~~~d~es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 657 WLHTLISMLNDTESDVTEHARKLIMKVLT 685 (1529)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999997777764
No 140
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.03 E-value=13 Score=41.77 Aligned_cols=212 Identities=14% Similarity=0.049 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcC------CChhhhhHHHHHHHHhhcC-CCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcC
Q psy2915 561 LIRALAVRTMGC------IRVDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSD 631 (883)
Q Consensus 561 ~vr~~AL~~L~~------i~~~~~~~~l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D 631 (883)
.+...++..|+. +.+.+..+.++..+...-+ =++..|=..++.++-++...+|+.+.. ..|.+.+...+-+
T Consensus 107 ~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~ 186 (372)
T PF12231_consen 107 SICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLS 186 (372)
T ss_pred HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555542 2233344444444433332 345566677788888888888877653 3499999988888
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchhhH--------------HhcHHHHHHHHHHccc---CChhhHHH--HHHHHhccCC
Q psy2915 632 SNPMVVANAVAALSEMNEASTSGVALI--------------EMNAQTINKLLTALNE---CTEWGQVF--ILDSLSNYSP 692 (883)
Q Consensus 632 ~d~~V~~~a~~~l~~i~~~~~~~~~~~--------------~l~~~~~~~L~~~l~~---~~~w~qi~--iL~lL~~~~~ 692 (883)
....++..|..++.++...-+.....- .+......+|.+.+.+ .-.|.|+- ++.+|+.-..
T Consensus 187 ~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~ 266 (372)
T PF12231_consen 187 SAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRL 266 (372)
T ss_pred cchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchh
Confidence 899999998888877764322111000 0111111222222222 22333333 3344432112
Q ss_pred CChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccC--Cc----chHHHHHHH
Q psy2915 693 KDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS--EP----EVQYVALRN 766 (883)
Q Consensus 693 ~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~--~~----niry~aL~~ 766 (883)
..-+...+.+.....+.++.+++++.+|..+=-.+......++.-.+..++-+..|+..-+.+ .+ +++-.++..
T Consensus 267 ~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~ 346 (372)
T PF12231_consen 267 DSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYS 346 (372)
T ss_pred hccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHH
Confidence 233344567777788899999999998877644443223333222345556666677654542 33 456666666
Q ss_pred HHHHHh
Q psy2915 767 INLIVQ 772 (883)
Q Consensus 767 l~~l~~ 772 (883)
+..+..
T Consensus 347 l~~lly 352 (372)
T PF12231_consen 347 LCNLLY 352 (372)
T ss_pred HhchHH
Confidence 655553
No 141
>KOG2005|consensus
Probab=93.97 E-value=1.7 Score=50.18 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHH
Q psy2915 560 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 639 (883)
Q Consensus 560 ~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~ 639 (883)
+.+-+.|+-++|.=...+| ..+.+-..+.-.+|.+|++.=+|++-++-.+|+. +..+.|.+...|.|+.|..+
T Consensus 622 ~avLgiAliAMgeeig~eM---~lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~shd~D~eva~n 694 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEM---VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKFSHDGDLEVAMN 694 (878)
T ss_pred chhhhhhhhhhhhhhhhHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHhccCcchHHHHH
Confidence 5566777777775444433 3345556677889999999999999888888876 36789999999999999999
Q ss_pred HHHHHHHHHhc
Q psy2915 640 AVAALSEMNEA 650 (883)
Q Consensus 640 a~~~l~~i~~~ 650 (883)
|+-+++-++..
T Consensus 695 aIfamGLiGAG 705 (878)
T KOG2005|consen 695 AIFAMGLIGAG 705 (878)
T ss_pred HHHHhccccCC
Confidence 99999999864
No 142
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=1.5 Score=49.49 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH
Q psy2915 371 DFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK 405 (883)
Q Consensus 371 ~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~ 405 (883)
.+.--+...||.++.- .......+.+.+++.+.
T Consensus 426 ~l~yG~~LGiGL~~Mg--San~eiye~lKe~l~nD 458 (926)
T COG5116 426 ELAYGVCLGIGLINMG--SANREIYEKLKELLKND 458 (926)
T ss_pred HHHHHHHhhhcchhcc--cccHHHHHHHHHHHhcc
Confidence 5555666667666532 23455666666666553
No 143
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.30 E-value=0.26 Score=42.96 Aligned_cols=65 Identities=25% Similarity=0.196 Sum_probs=37.2
Q ss_pred hhchhcCCCCHHHHHHHHHHhccCCc-----hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcc
Q psy2915 120 VFVKDCEDSNPLIRALAVRTMGCIRV-----DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ 184 (883)
Q Consensus 120 ~l~kDL~~~n~~vr~lALr~L~~i~~-----~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~ 184 (883)
...++++||.+-+|+-||..|.++-. ..-.+.+.......+.|+++||--.|+.++..+...+|+
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34556666666666666666665421 122344445555556666666666666666666665554
No 144
>KOG2956|consensus
Probab=93.30 E-value=3.8 Score=45.66 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=111.3
Q ss_pred hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC------Chhh-hhHHHHHHHHhhcCC-CChHHHhhHHHHHHHHHhhcc
Q psy2915 542 DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI------RVDK-ITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDINA 613 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i------~~~~-~~~~l~~~l~~~l~d-~~~~VRk~A~~al~~l~~~~~ 613 (883)
+...++.+.+.+-=.++...-|-.|+..|-.+ +..+ ....++..+.+.+.| .++..|+-|...+.++++..|
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 33344444444433444556677777755433 2222 344456677788888 889999999999999999999
Q ss_pred ccccccc--HHHHHHHhhcCCChhHHHHHHHHHHHHH-hcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhcc
Q psy2915 614 QLVEDQG--FLDQLKDLLSDSNPMVVANAVAALSEMN-EASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNY 690 (883)
Q Consensus 614 ~~~~~~~--~~~~l~~lL~D~d~~V~~~a~~~l~~i~-~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~ 690 (883)
..+.|.. .+..+.+.-.|.++.|+..|......+. ...| ..++ .-+...+...++-.-..+++.+.++
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P--~~~I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP--LQCI-------VNISPLILTADEPRAVAVIKMLTKL 433 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc--hhHH-------HHHhhHHhcCcchHHHHHHHHHHHH
Confidence 8886542 2222233335888888888877655544 3333 2222 2222333234444445566666665
Q ss_pred C-CCChHHHH----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCC
Q psy2915 691 S-PKDDREAQ----SICERITPRLAHANAAVVLSAVKVLMKLMEMLP 732 (883)
Q Consensus 691 ~-~~~~~~~~----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~ 732 (883)
. .-+.++.. ++.+++...-++.+++|+-+|+=|++.+...+|
T Consensus 434 ~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 434 FERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 3 33444443 445566666688999999999999999875555
No 145
>KOG2032|consensus
Probab=93.30 E-value=10 Score=42.79 Aligned_cols=110 Identities=22% Similarity=0.339 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHH
Q psy2915 353 NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQ 432 (883)
Q Consensus 353 nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr 432 (883)
+.+.++..|.+-.++++...|..+++.+|..+.--|.........+++.+ ++.+ +.+.+.+|+
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldai--------------i~gL---~D~~~~~V~ 317 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAI--------------IRGL---YDDLNEEVQ 317 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHH--------------HHHH---hcCCccHHH
Confidence 44556777777788888899999999999999765554444444444322 1112 234458899
Q ss_pred HHHHHHHHHHhhcCCc-hH----HHHHHHHHHHhhcCCCChhhhhhhHHHHHhh
Q psy2915 433 LQLLTAIVKLFLKRPT-DT----QELVQQVLSLATQDSDNPDLRDRGFIYWRLL 481 (883)
Q Consensus 433 ~~~L~al~Kl~~~~~~-~~----~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll 481 (883)
++.++++.++...-.+ .. .++..++.... .+ .++++|-.|...++.+
T Consensus 318 leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~-~s-e~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 318 LEAMKCLTMVLEKASNDDLESYLLNIALRLRTLF-DS-EDDKMRAAAFVLFGAL 369 (533)
T ss_pred HHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHH-Hh-cChhhhhhHHHHHHHH
Confidence 9999988876543211 11 11222222222 22 4788998887666544
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.12 E-value=12 Score=40.85 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHhcCC----Ch---hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccc
Q psy2915 558 SNPLIRALAVRTMGCI----RV---DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ 614 (883)
Q Consensus 558 ~n~~vr~~AL~~L~~i----~~---~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~ 614 (883)
+++.+.++||.+-+-+ .. .+..+..+|.+..+|.+++..||.+|-.+++=+|....+
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4577888888876632 22 234455678888999999999999999999988886553
No 147
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.12 E-value=19 Score=41.01 Aligned_cols=206 Identities=16% Similarity=0.217 Sum_probs=118.9
Q ss_pred CCHHHHHHHHhhh-hcCCCHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchh
Q psy2915 411 DNADELLESFLEG-FHDENTQVQLQLLTAIVKLFLKRPT--DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTF 487 (883)
Q Consensus 411 ~~~~~il~~l~~~-~~~~~~~vr~~~L~al~Kl~~~~~~--~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~ 487 (883)
++..++++.+.+. ...+++..|...+..++-+..+.+. ...+.+..+.....+. .+.+.+.++.+.+.-+..+
T Consensus 185 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~Wi~Ka--- 260 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSS-EDSELRPQALEILIWITKA--- 260 (415)
T ss_pred cCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhccc-CCcchhHHHHHHHHHHHHH---
Confidence 3455677766654 3444588888888888877777543 2444455554444122 3566677776555332221
Q ss_pred hhhhhhhHHHHHhhccCCC-cccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHH
Q psy2915 488 YILLHLTRLVIASMTVGKD-VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALA 566 (883)
Q Consensus 488 ~~~~~~l~kli~~~~~g~~-~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~A 566 (883)
.++.|+. ...+....+.++.+ ......+.-+++.+....++... . ..+..+|.
T Consensus 261 ------------Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~----~------~~~a~vkl-- 314 (415)
T PF12460_consen 261 ------------LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLN----K------ENHANVKL-- 314 (415)
T ss_pred ------------HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcC----c------cccchhhh--
Confidence 1112222 12233334455544 22222222222332222222200 0 11122222
Q ss_pred HHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc---ccHHHHHHHhhcCCChhHHHHHHHH
Q psy2915 567 VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED---QGFLDQLKDLLSDSNPMVVANAVAA 643 (883)
Q Consensus 567 L~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~---~~~~~~l~~lL~D~d~~V~~~a~~~ 643 (883)
+....+...++|.+.+.....+..+|..-..|+..+.+.-|..+-. +.+.|.+.+.|+-+|+.++.+++..
T Consensus 315 ------LykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~t 388 (415)
T PF12460_consen 315 ------LYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLET 388 (415)
T ss_pred ------HHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2345677788888888888777778989999999999987765432 3466777777787889999999999
Q ss_pred HHHHHhcCC
Q psy2915 644 LSEMNEAST 652 (883)
Q Consensus 644 l~~i~~~~~ 652 (883)
+..+..+.|
T Consensus 389 L~~~l~~~~ 397 (415)
T PF12460_consen 389 LKMILEEAP 397 (415)
T ss_pred HHHHHHcCH
Confidence 999998653
No 148
>KOG1992|consensus
Probab=93.11 E-value=25 Score=42.21 Aligned_cols=126 Identities=15% Similarity=0.099 Sum_probs=68.3
Q ss_pred hHHHHhhccCC--ChhHHHHHHHHHHHhhcc----CCcchhhhcccccccccCccchhhhccccccccccccchhhhchh
Q psy2915 51 FPDVVNCMQTD--NLELKKLVYLYLMNYAKS----HPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKD 124 (883)
Q Consensus 51 ~~~v~~~~~~~--~~~~k~~~y~~~~~~~~~----~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kD 124 (883)
-..+++++..+ +...|-.+.+|+.+|-+. ++|..+-.+-. -.-.| +.. +..-
T Consensus 39 ~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~---------~~e~i-----------ksl--Iv~l 96 (960)
T KOG1992|consen 39 PLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE---------DREQI-----------KSL--IVTL 96 (960)
T ss_pred hHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh---------HHHHH-----------HHH--HHHH
Confidence 34556666653 678999999999999662 33331111111 00000 000 1111
Q ss_pred -cCCCCHH--HHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHH-HhhhCccccccccHHHHHHHHh
Q psy2915 125 -CEDSNPL--IRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAK-LYDINAQLVEDQGFLDQLKDLL 199 (883)
Q Consensus 125 -L~~~n~~--vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~k-l~~~~p~~~~~~~~~~~L~~lL 199 (883)
+++++-. .-+-|+..+|+-..|+-.+.+.+.+.+.++..+- +--.++++..+ +|+++--..+...+...++..|
T Consensus 97 Ml~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~-~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vL 174 (960)
T KOG1992|consen 97 MLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDF-NVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVL 174 (960)
T ss_pred HhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccch-HHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 3332221 2257888888888899999999998888875444 44444444444 8875533333333334444444
No 149
>KOG1517|consensus
Probab=93.06 E-value=1.7 Score=52.66 Aligned_cols=137 Identities=25% Similarity=0.321 Sum_probs=96.0
Q ss_pred cchHHHHHhhcccchhHHHH-HHHHHHhhccCCchhhHhHHHHHHhh---------cCC---CCHHHHHHHHHHhcCCCh
Q psy2915 509 ALFPDVVNCMQTDNLELKKL-VYLYLMNYAKSHPDMAIMAVNTFVKD---------CED---SNPLIRALAVRTMGCIRV 575 (883)
Q Consensus 509 ~~~~~vi~ll~s~~~~~kr~-~yl~~~~~~~~~~~~~~l~~n~l~kd---------l~~---~n~~vr~~AL~~L~~i~~ 575 (883)
..|+-|+|+++|+-.++|-+ +++-+..++-..+-.+. |.|| +.+ -++.-|.+|.-.|+.+..
T Consensus 512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d-----LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD-----LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred chHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH-----HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 34888999999999999976 66656665433322222 2233 222 235889999998886522
Q ss_pred ------h-hhhHHHHHHHHhhcCC-CChHHHhhHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhHHHHHHHHH
Q psy2915 576 ------D-KITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLSDSNPMVVANAVAAL 644 (883)
Q Consensus 576 ------~-~~~~~l~~~l~~~l~d-~~~~VRk~A~~al~~l~~~~~~~~~---~~~~~~~l~~lL~D~d~~V~~~a~~~l 644 (883)
. -+...++..=...++| +.|..|.=.+.||++++..+++.-- .....++|..+|.|+-|.||.+|+-+|
T Consensus 587 nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 587 NFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFAL 666 (1387)
T ss_pred ccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 1 1233344444556677 5799999999999999997765411 123458889999999999999999999
Q ss_pred HHHHhc
Q psy2915 645 SEMNEA 650 (883)
Q Consensus 645 ~~i~~~ 650 (883)
+.+...
T Consensus 667 gtfl~~ 672 (1387)
T KOG1517|consen 667 GTFLSN 672 (1387)
T ss_pred HHHhcc
Confidence 999864
No 150
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.88 E-value=38 Score=45.46 Aligned_cols=49 Identities=16% Similarity=0.049 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHH
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK 626 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~ 626 (883)
+.-.++-.+.++..|+.+.||..|+..|.++...+...+...-|...+.
T Consensus 1344 lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~ 1392 (1780)
T PLN03076 1344 FWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFE 1392 (1780)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 4444555666677899999999999999999998888877544544444
No 151
>KOG1822|consensus
Probab=92.69 E-value=44 Score=43.99 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=80.1
Q ss_pred ccCccchhhhcccc--ccccccc--cchhhhchhcCCCCHHHHHHHHHHhccC----Cchh-hhHHHHHHHHhhcCCCCh
Q psy2915 95 KSSSSFQCMIDIRS--IPLFDLC--SSVGVFVKDCEDSNPLIRALAVRTMGCI----RVDK-ITEYLCEPLRKCLKDEDP 165 (883)
Q Consensus 95 ~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~kDL~~~n~~vr~lALr~L~~i----~~~~-~~~~l~~~v~~~l~d~~~ 165 (883)
-..+.|..|.+-++ +++-+.+ .++..+..++..+||..|+-|..+++.+ +.+. +.+.....+.++-+-.+|
T Consensus 851 al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~ 930 (2067)
T KOG1822|consen 851 ALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDP 930 (2067)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCc
Confidence 34444555555555 4433333 2344678899999999999998888875 3333 333333444444445566
Q ss_pred hHHHHHHHHHHHHhhhCccccccccHH---HHHHHHhcCC-ChhHHHHHHHHHHhccccCCcc
Q psy2915 166 YVRKTAAVCVAKLYDINAQLVEDQGFL---DQLKDLLSDS-NPMVVANAVAAILLLPRKSYWQ 224 (883)
Q Consensus 166 ~VRk~A~~al~kl~~~~p~~~~~~~~~---~~L~~lL~D~-d~~V~~~a~~~L~ei~~~~~~~ 224 (883)
+-|---.+|++.+++...+....+... ..+..+-.|+ +|.|+..++.++.-+.+.....
T Consensus 931 i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~ 993 (2067)
T KOG1822|consen 931 ITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPM 993 (2067)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCce
Confidence 666667778887776554444322222 2445555675 5599999999998887665443
No 152
>KOG4653|consensus
Probab=92.59 E-value=4.6 Score=48.21 Aligned_cols=180 Identities=15% Similarity=0.176 Sum_probs=107.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhh--hCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcccccccc
Q psy2915 153 CEPLRKCLKDEDPYVRKTAAVCVAKLYD--INAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSR 230 (883)
Q Consensus 153 ~~~v~~~l~d~~~~VRk~A~~al~kl~~--~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~ 230 (883)
.......+.|+-+.+|-.|..-+.++++ .....+..++.+......|.|.|+.|-.+|+..+..+|+..|..
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~------ 802 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED------ 802 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh------
Confidence 3445556788899999999999999998 33334434556677778889999999999999776666654432
Q ss_pred ccCCCCcHHHHHh-hccccccCCCCCCCchH-HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcCC-hhHHHHHHH
Q psy2915 231 KKQICWNLPYLMN-LSVIYPAWPLSTINPHT-PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALR 307 (883)
Q Consensus 231 ~~~~~w~q~~~l~-l~~~~~~~~l~~~n~~v-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~vr~~aL~ 307 (883)
++. +.++..++.-++.-..+ ..-.++++++...++ +.......++...++-..++ ...|..++.
T Consensus 803 ----------il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge---l~~~y~~~Li~tfl~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 803 ----------ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE---LVFKYKAVLINTFLSGVREPDHEFRASSLA 869 (982)
T ss_pred ----------hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHhcCCchHHHHHhHHH
Confidence 222 33322111111110111 223455555444442 22333334444444443322 257999999
Q ss_pred HHHHHHhhCc----hhHHhcc-ccee-eccCCCHHHHHHHHHHHHHhcCh
Q psy2915 308 NINLIVQKRP----DILKHEM-KVFF-VKYNDPIYVKLEKLDIMIRLASQ 351 (883)
Q Consensus 308 ~l~~l~~~~~----~~~~~~~-~~~~-~l~~~~~~Ir~~aL~iL~~l~~~ 351 (883)
+++++++... ++|.+-. .++. ...|+..-+||.|..++..+-+.
T Consensus 870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 9999998654 3333221 1222 23477788999999998877653
No 153
>KOG2160|consensus
Probab=92.58 E-value=1.2 Score=48.03 Aligned_cols=136 Identities=22% Similarity=0.175 Sum_probs=92.1
Q ss_pred CCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHH
Q psy2915 60 TDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRT 139 (883)
Q Consensus 60 ~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~ 139 (883)
+.+. ..|.+-+.-..+.-++=|.|...++. .|..++..-++++++.+|.+|.+.
T Consensus 94 s~~l-e~ke~ald~Le~lve~iDnAndl~~~-------------------------ggl~~ll~~l~~~~~~lR~~Aa~V 147 (342)
T KOG2160|consen 94 SVDL-EDKEDALDNLEELVEDIDNANDLISL-------------------------GGLVPLLGYLENSDAELRELAARV 147 (342)
T ss_pred cCCH-HHHHHHHHHHHHHHHhhhhHHhHhhc-------------------------cCHHHHHHHhcCCcHHHHHHHHHH
Confidence 3444 44555555444545555666666655 466677778999999999999999
Q ss_pred hccCC--chhhhHHHH-----HHHHhhc-CCCChhHHHHHHHHHHHHhhhCcccccc---ccHHHHHHHHhcC--CChhH
Q psy2915 140 MGCIR--VDKITEYLC-----EPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQLVED---QGFLDQLKDLLSD--SNPMV 206 (883)
Q Consensus 140 L~~i~--~~~~~~~l~-----~~v~~~l-~d~~~~VRk~A~~al~kl~~~~p~~~~~---~~~~~~L~~lL~D--~d~~V 206 (883)
+|+.. .|...+.++ +.+.+.+ .+.+-.||.+|..|+..+.+..|..... ..-...|.+++.+ .+.-.
T Consensus 148 igt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~l 227 (342)
T KOG2160|consen 148 IGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKL 227 (342)
T ss_pred HHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHH
Confidence 99863 355444443 3344555 4556779999999999999987755421 1123678888887 56666
Q ss_pred HHHHHHHHHhccccC
Q psy2915 207 VANAVAAILLLPRKS 221 (883)
Q Consensus 207 ~~~a~~~L~ei~~~~ 221 (883)
..-|+.++..+....
T Consensus 228 krK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 228 KRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777788787777654
No 154
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.46 E-value=7.6 Score=41.13 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=36.0
Q ss_pred ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccc
Q psy2915 574 RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ 614 (883)
Q Consensus 574 ~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~ 614 (883)
.++.+++..+|.+..-|.+.++.||.-++.++..+...++.
T Consensus 201 s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 201 STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 46888999999999999999999999999999998887654
No 155
>KOG2032|consensus
Probab=92.44 E-value=14 Score=41.63 Aligned_cols=241 Identities=15% Similarity=0.096 Sum_probs=128.5
Q ss_pred hhcCCCCHHHHHHHHHHhccCCc--h----hhhHHHHHHHHhhcCC-CChhHHHHHHHHHHHHhhhCc-ccccc--ccHH
Q psy2915 123 KDCEDSNPLIRALAVRTMGCIRV--D----KITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDINA-QLVED--QGFL 192 (883)
Q Consensus 123 kDL~~~n~~vr~lALr~L~~i~~--~----~~~~~l~~~v~~~l~d-~~~~VRk~A~~al~kl~~~~p-~~~~~--~~~~ 192 (883)
.-..||+..+|++|.|.|++.-+ | .....+...|..+|-| .+..|--.|..|+.++..+-. ..+++ -+..
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 34678999999999999998743 2 2334455556666644 468899999999998865332 12211 1133
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHh-hccccccC-CCCCCCchH-HHHHHHHHH
Q psy2915 193 DQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMN-LSVIYPAW-PLSTINPHT-PLLKVLMKL 269 (883)
Q Consensus 193 ~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~-l~~~~~~~-~l~~~n~~v-~~~~~l~~l 269 (883)
..+..+..|.++.++.+|+.+++.+.+-....+ -..+.=. ..++.|-. .+++.||-| .|++..+..
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~-----------e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW-----------EEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc-----------hhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 567788899999999999999988875443322 1111101 11111111 567888877 555554432
Q ss_pred hhcCCCChhhHHHHHHHH-hHHHHHhhcCChhHHHHHHH--HHHHHHhhCchhHHhccc-ceeeccCCCHHHHHHHHHHH
Q psy2915 270 MEMLPGEGDFVSTLTKKL-APPLVTLLSSEPEVQYVALR--NINLIVQKRPDILKHEMK-VFFVKYNDPIYVKLEKLDIM 345 (883)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~vr~~aL~--~l~~l~~~~~~~~~~~~~-~~~~l~~~~~~Ir~~aL~iL 345 (883)
. ++. +.+.. ...+-+.+... -.++-++. .-.++...+|+...--+. .+......=+.||..+...-
T Consensus 414 c---~p~------l~rke~~~~~q~~ld~~-~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t 483 (533)
T KOG2032|consen 414 C---YPN------LVRKELYHLFQESLDTD-MARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKT 483 (533)
T ss_pred c---Cch------hHHHHHHHHHhhhhHHh-HHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHH
Confidence 1 111 11111 11122222100 11332221 123445556655432211 11111222223444433322
Q ss_pred H--------HhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q psy2915 346 I--------RLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCA 384 (883)
Q Consensus 346 ~--------~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la 384 (883)
. ..|..-....+...|..+-.++-++++..+..+++.+.
T Consensus 484 ~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 484 TRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2 23333444557777777777777788777777777654
No 156
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.06 E-value=4.5 Score=45.15 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=77.8
Q ss_pred hchhcCCCCHHHHHHHHHHhccC-----CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHH
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCI-----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 195 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i-----~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L 195 (883)
+.+|. .+..-|.+|+|.+-.+ +..++...+...+..+.++++...|..|..+++.+.-.+|+.+-..+-+..+
T Consensus 75 L~~~~--~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L 152 (371)
T PF14664_consen 75 LDRDN--KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVL 152 (371)
T ss_pred hcccC--CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHH
Confidence 44443 4677888998876543 3446677788899999999999999999999999999999998766777888
Q ss_pred HHHhcCCChhHHHHHHHHHHhccccC
Q psy2915 196 KDLLSDSNPMVVANAVAAILLLPRKS 221 (883)
Q Consensus 196 ~~lL~D~d~~V~~~a~~~L~ei~~~~ 221 (883)
.+.+.|.......+.+.++..+.+..
T Consensus 153 ~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 153 LRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred HHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 88888876677777777777777653
No 157
>KOG4500|consensus
Probab=91.80 E-value=25 Score=39.09 Aligned_cols=173 Identities=13% Similarity=0.176 Sum_probs=107.9
Q ss_pred hhcCCCCHH----HHHHHHHHhcCCChhhhh-----HHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc--cccH
Q psy2915 553 KDCEDSNPL----IRALAVRTMGCIRVDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE--DQGF 621 (883)
Q Consensus 553 kdl~~~n~~----vr~~AL~~L~~i~~~~~~-----~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~ 621 (883)
|++.+..++ -|+.-+-.+-..|+++|- +.+...+...+.+.+...--.++++++.+.|.+...+. +.++
T Consensus 278 k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~ 357 (604)
T KOG4500|consen 278 KDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDF 357 (604)
T ss_pred ccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 355554432 244444444445555522 23666777888888899999999999999997654432 4567
Q ss_pred HHHHHHhhc-----CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHH-HHHHHHHHcccCChhhHHHHHHHHhccCCCCh
Q psy2915 622 LDQLKDLLS-----DSNPMVVANAVAALSEMNEASTSGVALIEMNAQ-TINKLLTALNECTEWGQVFILDSLSNYSPKDD 695 (883)
Q Consensus 622 ~~~l~~lL~-----D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~-~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~ 695 (883)
++.|.++|. |+|..++.+++++|..+.-..|+...+ .|. ....++..+....|-.+-+++..+.+....-+
T Consensus 358 ~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~---~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 358 LNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHF---APAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhc---cccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 788888773 788899999999999887433322211 222 23344444445556566676666666543222
Q ss_pred HHH------HHHHHHHhHhhcCCCh-HHHHHHHHHHHHhh
Q psy2915 696 REA------QSICERITPRLAHANA-AVVLSAVKVLMKLM 728 (883)
Q Consensus 696 ~~~------~~il~~l~~~l~~~~~-aV~~eai~~i~~~~ 728 (883)
.-+ .+.++.+..+-++... .|..|.-+++..+.
T Consensus 435 ~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 435 YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 111 1455666666666665 48889888887664
No 158
>KOG4535|consensus
Probab=91.75 E-value=26 Score=39.34 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=34.8
Q ss_pred CCCChhHHHHHHHHHHHHhhhC-------------ccccccccHHHHHHH-HhcCCChhHHHHHHHHHHhccc
Q psy2915 161 KDEDPYVRKTAAVCVAKLYDIN-------------AQLVEDQGFLDQLKD-LLSDSNPMVVANAVAAILLLPR 219 (883)
Q Consensus 161 ~d~~~~VRk~A~~al~kl~~~~-------------p~~~~~~~~~~~L~~-lL~D~d~~V~~~a~~~L~ei~~ 219 (883)
+|-...||..|..++....+.- ||. ++.-.|.|.. -|.|+++-.+..|+..+..+..
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~--~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~ 76 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDT--PELGSPSLMTLTLKDPSPKTRACALQVLSAILE 76 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCC--CCCCCceeeEEecCCCChhHHHHHHHHHHHHHH
Confidence 3344567777777776654422 222 1112234433 4579999999999988887764
No 159
>KOG1293|consensus
Probab=91.69 E-value=32 Score=40.25 Aligned_cols=209 Identities=15% Similarity=0.093 Sum_probs=132.4
Q ss_pred hcCCCCHHHHHHHHHHhcCCCh----------hhhhHHHH-HHHHhhcCCCChHHHhhHHHHHHHHHhh----ccccccc
Q psy2915 554 DCEDSNPLIRALAVRTMGCIRV----------DKITEYLC-EPLRKCLKDEDPYVRKTAAVCVAKLYDI----NAQLVED 618 (883)
Q Consensus 554 dl~~~n~~vr~~AL~~L~~i~~----------~~~~~~l~-~~l~~~l~d~~~~VRk~A~~al~~l~~~----~~~~~~~ 618 (883)
.++...+..|..+++...-... .++.+... ..+......++..++.+|++|+..+.+. ... ..+
T Consensus 339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~ 417 (678)
T KOG1293|consen 339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKR 417 (678)
T ss_pred HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Ccc
Confidence 4567778888888876553311 11222211 2222233477889999999999877662 222 444
Q ss_pred ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHH
Q psy2915 619 QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREA 698 (883)
Q Consensus 619 ~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 698 (883)
.+..+++.+++.|++..|+.+++.+++.+.-+-.+++..+ +....+..+.+.+.++++-.....+.+|....-..+++-
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskf-l~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKF-LRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHH-HHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 5688999999999999999999999999986544443222 222456677777888899899999999988655443322
Q ss_pred -HHH-----HHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHh
Q psy2915 699 -QSI-----CERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 699 -~~i-----l~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~ 772 (883)
+.. .+.+..+.++...+|.-+|.+++-++. .++ .. .+. +++.+.+.+-+..-..+ +++.
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~---c~~----~~----svd---fll~~~~~~ld~i~l~l-k~a~ 561 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT---CNS----RK----SVD---FLLEKFKDVLDKIDLQL-KIAI 561 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh---cCc----HH----HHH---HHHHhhhHHHHHHHHHH-hhcc
Confidence 222 234455667888899999999887773 232 11 122 44445555544444444 5555
Q ss_pred hCchhHh
Q psy2915 773 KRPDILK 779 (883)
Q Consensus 773 ~~~~~~~ 779 (883)
..|=.+.
T Consensus 562 ~~pi~ie 568 (678)
T KOG1293|consen 562 GSPILIE 568 (678)
T ss_pred CCceehh
Confidence 5554444
No 160
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.64 E-value=8.3 Score=43.64 Aligned_cols=255 Identities=19% Similarity=0.238 Sum_probs=137.3
Q ss_pred HHHHHHhhc-CCChhHHHHHHHHHHHHHhcCCCchhhHHhc----HHHHHHHHHHcccCChhhHHHHHHHHhccC---CC
Q psy2915 622 LDQLKDLLS-DSNPMVVANAVAALSEMNEASTSGVALIEMN----AQTINKLLTALNECTEWGQVFILDSLSNYS---PK 693 (883)
Q Consensus 622 ~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~----~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~~ 693 (883)
+..+..++. ..+..++...+.++.++....|+...++.-. +..+..+++.+...+.+.+.+..++|+.+. +.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 344445554 4566777777777777776655433322211 334556666666667778888777777753 32
Q ss_pred C--hHHHHHHHHHHhHhhcCCC-hHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhccCC---cchHHHHHHH
Q psy2915 694 D--DREAQSICERITPRLAHAN-AAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLSSE---PEVQYVALRN 766 (883)
Q Consensus 694 ~--~~~~~~il~~l~~~l~~~~-~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~~~---~niry~aL~~ 766 (883)
. ......+.+.+...+++.+ ..-..-|++++..+. ..++++....+ ...++|..++++. ..+.|-++-.
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL----~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL----RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh----CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 2 2222235556666666532 344445556655542 22344443332 3456667777643 3677777666
Q ss_pred HHHHHhhCchhHh---hc--cceeE-E-ccCCCHHHHHHHHHHHHHhccccc-------hhh------------------
Q psy2915 767 INLIVQKRPDILK---HE--MKVFF-V-KYNDPIYVKLEKLDIMIRLASQAN-------IAQ------------------ 814 (883)
Q Consensus 767 l~~l~~~~~~~~~---~~--~~~~~-~-l~~dd~~Ir~~~l~lL~~l~~~~N-------~~~------------------ 814 (883)
+=.+.-. ++... .+ +..+. . ....-.-|=|.++-++..+.+... ...
T Consensus 211 lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 5444322 22111 10 11111 1 112234556667777777777431 111
Q ss_pred -hhHHHHHHHH--------HHHHH--HhhC----------------------------CCchHHHHHHHHhhcccCCcHH
Q psy2915 815 -VNYVVQEAIV--------VIKDI--FRKY----------------------------PNKYETIISTLCENLDTLDEPE 855 (883)
Q Consensus 815 -~~~~~~e~i~--------~i~~l--~~~~----------------------------p~~~~~~i~~L~~~l~~i~~~~ 855 (883)
.|.-..|-+. .++.+ .++| -+.-..++..|.+.++.-++|.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 1111122222 22222 1222 1222467778888886667888
Q ss_pred HHHHHHHHHhcCcCccCCHHHHHHhh
Q psy2915 856 ARASMIWIIGEYAERIDNADELLESF 881 (883)
Q Consensus 856 ~~~~~~w~lgey~~~~~~~~~~~~~~ 881 (883)
..+.+..=||||+..-+.+..+++.+
T Consensus 370 ~laVAc~Dige~vr~~P~gr~i~~~l 395 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRGKDVVEQL 395 (429)
T ss_pred eeehhhhhHHHHHHHCccHHHHHHHc
Confidence 88888899999999999888888754
No 161
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.62 E-value=0.23 Score=36.19 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=29.3
Q ss_pred HHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHH
Q psy2915 604 CVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 643 (883)
Q Consensus 604 al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~ 643 (883)
++..+...+|.....+.+.+.+...+.|+++.||.+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4556666777777666677777777888888888888765
No 162
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.44 E-value=14 Score=41.22 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHH
Q psy2915 557 DSNPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCV 605 (883)
Q Consensus 557 ~~n~~vr~~AL~~L~~i---~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al 605 (883)
+..|..|+-|++.+... .+++....++|.+.++|.+++.-|+.=||.|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 56799999999988854 44677788999999999999999999888875
No 163
>KOG2005|consensus
Probab=91.35 E-value=35 Score=40.00 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=83.0
Q ss_pred ccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccC--CchhhhHHHHHHHHhhcCCCChhHHHHHH
Q psy2915 95 KSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAA 172 (883)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i--~~~~~~~~l~~~v~~~l~d~~~~VRk~A~ 172 (883)
|-.-..+.-.-+|-|-+-|+=+|++++.|-+-++.+++.+=||-.+|-. +..+-+++....+...+.+++..+|-.|+
T Consensus 394 ke~g~~sa~aS~G~I~~Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aI 473 (878)
T KOG2005|consen 394 KEHGMTSAAASLGMIQLWNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAI 473 (878)
T ss_pred cccCchHhhhhcchhheecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHh
Confidence 3334445556677788899999999999999999999999998887754 44556666666677778899999999999
Q ss_pred HHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHH
Q psy2915 173 VCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVA 212 (883)
Q Consensus 173 ~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~ 212 (883)
++++-.|.-. - .+.....|..++.|.++..-..++.
T Consensus 474 lGLglayaGs---q-~e~V~~lL~Pi~~d~~~~~ev~~~a 509 (878)
T KOG2005|consen 474 LGLGLAYAGS---Q-REEVLELLSPIMFDTKSPMEVVAFA 509 (878)
T ss_pred hhhHHhhcCC---c-hHHHHHHHhHHhcCCCCchhHHHHH
Confidence 9999777421 1 1223346777888877774334443
No 164
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.27 E-value=1.2 Score=45.50 Aligned_cols=130 Identities=20% Similarity=0.180 Sum_probs=86.0
Q ss_pred HHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCC-CH-HHHHHHHHHhcCCChhhhhHHHHHHHHhhcC
Q psy2915 514 VVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDS-NP-LIRALAVRTMGCIRVDKITEYLCEPLRKCLK 591 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~-n~-~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~ 591 (883)
+-.+..+.....+-++++.+....+..+.. ..+.+.+-+..- |. .+=..|-+.++.+.... +...+.+.+.+.
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~ 130 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAK 130 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHh
Confidence 345677777778877777776654332211 345566666553 33 33444455555542221 345567888889
Q ss_pred CCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 592 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 592 d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
|+++++|+.|+.++...++. ... ..+...+..++.|++..|+.+..-+|.+++...|
T Consensus 131 s~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 131 SDNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp CSSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999877665 222 2456777778899999999999999999998754
No 165
>KOG2956|consensus
Probab=91.07 E-value=9.7 Score=42.62 Aligned_cols=184 Identities=22% Similarity=0.278 Sum_probs=113.6
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHH---HHHHhhcC-CChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD---QLKDLLSD-SNPMVVANAVAALSEMNEASTSGVALIEMNAQTIN 666 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~---~l~~lL~D-~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~ 666 (883)
.+....=|+.|..-+..+...+...+=+..|.+ .+.+.|.| .+...+.-|+..|.+++...| ..+++....++.
T Consensus 297 g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~ 374 (516)
T KOG2956|consen 297 GSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--ARLFDSTEIAIC 374 (516)
T ss_pred CccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--HhhhchHHHHHH
Confidence 455666788888878887665544432222333 33445567 899999999999999998744 456677777777
Q ss_pred HHHHHcccCChhh-HH---HHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHH
Q psy2915 667 KLLTALNECTEWG-QV---FILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLT 742 (883)
Q Consensus 667 ~L~~~l~~~~~w~-qi---~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~ 742 (883)
+++..-.+..+-. .. -.++++..+-|. .-+..+.+++.....-....+++.+.++.+-++.. ++ -..+
T Consensus 375 K~Leaa~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~E-eL-~~ll 446 (516)
T KOG2956|consen 375 KVLEAAKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAE-EL-LNLL 446 (516)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHH-HH-HHhh
Confidence 7777655543321 11 144555554443 22444555566566655666677777766544442 33 3455
Q ss_pred HHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCc-hhHhhccce
Q psy2915 743 KKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRP-DILKHEMKV 784 (883)
Q Consensus 743 ~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~-~~~~~~~~~ 784 (883)
..+.|.++.=.. .+..+|-.+.=+|-.++.... +-+.+|+..
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 667776665443 567788888777766666554 667777643
No 166
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.79 E-value=0.31 Score=35.58 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=29.2
Q ss_pred HHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHH
Q psy2915 174 CVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 213 (883)
Q Consensus 174 al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~ 213 (883)
|+..+...+|+.+..+...+.+.+.+.|+++.||-+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4566677777777666677777777788888888877764
No 167
>KOG1820|consensus
Probab=90.77 E-value=14 Score=45.21 Aligned_cols=141 Identities=11% Similarity=0.141 Sum_probs=104.3
Q ss_pred HHHHhhcCCh--hHHHHHHHHHHHHHhhCchhHHhcc-----cceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHH
Q psy2915 290 PLVTLLSSEP--EVQYVALRNINLIVQKRPDILKHEM-----KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELK 362 (883)
Q Consensus 290 ~L~~lL~~~~--~vr~~aL~~l~~l~~~~~~~~~~~~-----~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~ 362 (883)
.++.....+. ++...++..+..|+..-+..+.+|. .+|.++.+.-..+|...+.++-+.++..+...+.+...
T Consensus 298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~ 377 (815)
T KOG1820|consen 298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAIL 377 (815)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3344334444 5777788999999998888888773 45557778888899999999999999888888888888
Q ss_pred HhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q psy2915 363 EYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKL 442 (883)
Q Consensus 363 ~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl 442 (883)
.+++..++.++.++...+..+-.+..+.. ..-+....+...++....|.+.+||.+++.+++-+
T Consensus 378 e~lk~knp~~k~~~~~~l~r~~~~~~~~~----------------~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 378 EALKGKNPQIKGECLLLLDRKLRKLGPKT----------------VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHhcCCChhhHHHHHHHHHHHHhhcCCcC----------------cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 88999999998888877777665554310 01112334566677777899999999999988877
Q ss_pred hhcC
Q psy2915 443 FLKR 446 (883)
Q Consensus 443 ~~~~ 446 (883)
....
T Consensus 442 ~k~~ 445 (815)
T KOG1820|consen 442 MKVH 445 (815)
T ss_pred HHHh
Confidence 6543
No 168
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=90.76 E-value=3.4 Score=43.12 Aligned_cols=147 Identities=18% Similarity=0.262 Sum_probs=81.4
Q ss_pred hcCCCChHHHhhHHHHHHHHHhhccccc-cc----------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC-CCchh
Q psy2915 589 CLKDEDPYVRKTAAVCVAKLYDINAQLV-ED----------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS-TSGVA 656 (883)
Q Consensus 589 ~l~d~~~~VRk~A~~al~~l~~~~~~~~-~~----------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~-~~~~~ 656 (883)
+++|+++.|-|.|+.|...+|+..=+.+ .+ ..+...+.+++++.+++|+.+|+..+..+..-. +....
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999999998421111 00 123445556778889999999999998886321 10000
Q ss_pred hHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCC--hHHHHHHHHHHHHhhhhCCCC
Q psy2915 657 LIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHAN--AAVVLSAVKVLMKLMEMLPGE 734 (883)
Q Consensus 657 ~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~--~aV~~eai~~i~~~~~~~~~~ 734 (883)
--.-.+.--.-=+..++...|.+...-|+ .|+..+++.+...+++.. +.++..+++++..++. .
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le----------~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak---~- 146 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLE----------AEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAK---Q- 146 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHH----------HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHH---H-
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHH----------HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH---H-
Confidence 00000000000011112223444433333 567788999988888765 6777788888877752 2
Q ss_pred hhhHHHHHHHhhhHHHHh
Q psy2915 735 GDFVSTLTKKLAPPLVTL 752 (883)
Q Consensus 735 ~~l~~~~~~~~~~~L~~l 752 (883)
+++...++.+.|..+
T Consensus 147 ---RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 147 ---RPQFMSRILPALLSF 161 (239)
T ss_dssp ---SGGGHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHhc
Confidence 233344555555544
No 169
>KOG1822|consensus
Probab=90.71 E-value=10 Score=49.37 Aligned_cols=261 Identities=20% Similarity=0.213 Sum_probs=143.3
Q ss_pred hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhcC-CCChHHHhhHHHHHHHHHhhccccc
Q psy2915 542 DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~~~~~~~l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
++..+..-.+..++..+||..|+.|..+++.+ +++.+...+.....+-+. -.+|+-|---.++++.+++......
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 45555566667788899999999999999875 333333444444444444 5667777777889999988766555
Q ss_pred ccccHHH---HHHHhhcCCC-hhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCC
Q psy2915 617 EDQGFLD---QLKDLLSDSN-PMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSP 692 (883)
Q Consensus 617 ~~~~~~~---~l~~lL~D~d-~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~ 692 (883)
...++.. .+..+-.|+. |.|+..++.++..+... ....++.++.+...-+.+.+- ..|-..+.+.+..++...
T Consensus 952 s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s--~~p~~~~~ve~tlsl~~~lLl-s~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen 952 SGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDS--SGPMFRVLVEPTLSLCLKLLL-SVPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred CchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC--CCceehhhHHHHHHHHHHHcC-CCCcchhhhhhhhccccc
Confidence 4444434 4555556765 59999999999998753 233456666666655555443 233344444444444322
Q ss_pred CChHH------------------HHHHHH--HH--hHh-hcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHH
Q psy2915 693 KDDRE------------------AQSICE--RI--TPR-LAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPL 749 (883)
Q Consensus 693 ~~~~~------------------~~~il~--~l--~~~-l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L 749 (883)
.++.+ ....++ ++ ..+ +.+.++-+..++++++-++.-.-|.. .-...+++.+
T Consensus 1029 ~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~-----~n~~~lV~~L 1103 (2067)
T KOG1822|consen 1029 GDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH-----VNLDSLVLQL 1103 (2067)
T ss_pred cchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh-----ccHHHHHHHH
Confidence 11111 111111 11 112 33446678888888888774212221 1123355555
Q ss_pred HHhccC-CcchHHHHHHHHHHHHhhCc--------------------hhHhh-cc----ceeEEccCC-CHHHHHHHHHH
Q psy2915 750 VTLLSS-EPEVQYVALRNINLIVQKRP--------------------DILKH-EM----KVFFVKYND-PIYVKLEKLDI 802 (883)
Q Consensus 750 ~~ll~~-~~niry~aL~~l~~l~~~~~--------------------~~~~~-~~----~~~~~l~~d-d~~Ir~~~l~l 802 (883)
..++++ .--+|-.....+..++++.- +.+.. +. ..|.-+.-. |....+..+++
T Consensus 1104 ~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~t 1183 (2067)
T KOG1822|consen 1104 CSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILET 1183 (2067)
T ss_pred HHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHH
Confidence 555553 33344444445555544332 11111 21 112223323 77777888888
Q ss_pred HHHhcccc
Q psy2915 803 MIRLASQA 810 (883)
Q Consensus 803 L~~l~~~~ 810 (883)
+..|-|.-
T Consensus 1184 l~~~~~~~ 1191 (2067)
T KOG1822|consen 1184 LSRMLNSL 1191 (2067)
T ss_pred HHHHHHHH
Confidence 87755443
No 170
>KOG2759|consensus
Probab=90.58 E-value=8.4 Score=42.51 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHhhcC-CCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 582 LCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 582 l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
++..+.+.|. +.+|.+=.-|+.-++...+.+|+- +..-.--+.+-++++-+||.|+.+|+.++..+-.
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 4444555555 334777777777788877777754 2223345677788888888888888888877753
No 171
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.54 E-value=13 Score=39.34 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHhhhCc-cccccccHHHHHHHHhcC--CChhHHHHHHHHHHhcccc
Q psy2915 156 LRKCLKDEDPYVRKTAAVCVAKLYDINA-QLVEDQGFLDQLKDLLSD--SNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 156 v~~~l~d~~~~VRk~A~~al~kl~~~~p-~~~~~~~~~~~L~~lL~D--~d~~V~~~a~~~L~ei~~~ 220 (883)
+...|+++++.+|.+|..++..+...-| +.+.. .-+..|.+...+ .|+.....++.++..+.+.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~-~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSR-QEVQVLLDFFCSRLDDHACVQPALKGLLALVKM 70 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhC
Confidence 4456888888899998888888776555 33332 223334333322 3666666667777776643
No 172
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.43 E-value=36 Score=38.61 Aligned_cols=67 Identities=22% Similarity=0.231 Sum_probs=48.4
Q ss_pred HHHHHHhhc-CCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 582 LCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 582 l~~~l~~~l-~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
++..+.+.+ .+.+|.+---|+.=++.+.+.+|.- +..-..-..+-+++.++|+.|+..|+.++.++-
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334455555 3456777778888889999988743 222234466778999999999999999998885
No 173
>KOG2160|consensus
Probab=89.92 E-value=1.6 Score=47.18 Aligned_cols=105 Identities=23% Similarity=0.156 Sum_probs=69.8
Q ss_pred HHhhcCCCChHHHhhHHHHHHHHHhhcccccc---cccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcCCCchhhHHhc
Q psy2915 586 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEASTSGVALIEMN 661 (883)
Q Consensus 586 l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~---~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~ 661 (883)
+...++++++.||..|+..++.+.+..|.... ...+.+.|...|. |.+-.|+..|+-+++.+..+.+.....+..+
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 34478999999999999999999998886633 2346666666666 6777899999999999998765333322222
Q ss_pred HHHHHHHHHHccc--CChhhHHHHHHHHhccC
Q psy2915 662 AQTINKLLTALNE--CTEWGQVFILDSLSNYS 691 (883)
Q Consensus 662 ~~~~~~L~~~l~~--~~~w~qi~iL~lL~~~~ 691 (883)
+. +.-|.+.+.+ .+.=.|++++-++..+.
T Consensus 209 ~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 209 NG-YQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred CC-HHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 22 3333333333 45556666666666554
No 174
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.72 E-value=11 Score=43.97 Aligned_cols=204 Identities=21% Similarity=0.184 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhcc-CCCc
Q psy2915 429 TQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTV-GKDV 507 (883)
Q Consensus 429 ~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~-g~~~ 507 (883)
.++|..++.-++..+... .+.+..++- +..| .+.+|-++|-..+.-+..+-+.. +.+.+++..... |-+.
T Consensus 218 ~~~K~~il~fL~sg~f~d----~~~~~~~li-Asad-~~~~V~~~ae~~LKr~~~~~ed~---~~V~~L~~Ly~G~~~~~ 288 (501)
T PF13001_consen 218 TERKLAILKFLASGFFPD----EERFPPLLI-ASAD-SNSSVSDRAEDLLKRLSVSLEDP---DLVDRLFDLYLGKGIPP 288 (501)
T ss_pred HHHHHHHHHHHHhcCCCc----HhHHhheee-EEeC-CcchHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCCch
Confidence 456666666665554421 233444443 3344 37889999987777666554433 344454444421 2111
Q ss_pred ccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCC--CHHHHHHHHHHh---cCC---Chhhhh
Q psy2915 508 SALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDS--NPLIRALAVRTM---GCI---RVDKIT 579 (883)
Q Consensus 508 ~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~--n~~vr~~AL~~L---~~i---~~~~~~ 579 (883)
..... -.+.....|-+.|+.=+..+....+. +..-+...+.++ +.-.|.++++.+ ... ..+...
T Consensus 289 ~~~~~-----pa~~~lq~kIL~~L~kS~~Aa~~~~~---~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l 360 (501)
T PF13001_consen 289 ENGRP-----PASPRLQEKILSLLSKSVIAATSFPN---ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL 360 (501)
T ss_pred hcCCC-----CCCHHHHHHHHHHHHHhHHHHhCCcc---HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH
Confidence 11111 12223445666776665554433222 223344566677 677888888888 432 223333
Q ss_pred HHHHHHH----HhhcC--------CCChHHHhhHHHHHHHHHhhccccc-ccccHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy2915 580 EYLCEPL----RKCLK--------DEDPYVRKTAAVCVAKLYDINAQLV-EDQGFLDQLKDLLSDSNPMVVANAVAALSE 646 (883)
Q Consensus 580 ~~l~~~l----~~~l~--------d~~~~VRk~A~~al~~l~~~~~~~~-~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~ 646 (883)
..+-+.| .+.+. ..+...|..|..++|.+.+..|..+ .+-.++..|-+-|++++++++.+.-.+|..
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALss 440 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSS 440 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 3333333 33442 2467899999999999999999998 455677777777789999999999999998
Q ss_pred HHh
Q psy2915 647 MNE 649 (883)
Q Consensus 647 i~~ 649 (883)
+..
T Consensus 441 l~~ 443 (501)
T PF13001_consen 441 LAP 443 (501)
T ss_pred HHH
Confidence 884
No 175
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=89.63 E-value=1.1 Score=45.95 Aligned_cols=133 Identities=19% Similarity=0.135 Sum_probs=84.9
Q ss_pred HHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCC-CCHH
Q psy2915 53 DVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCED-SNPL 131 (883)
Q Consensus 53 ~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~-~n~~ 131 (883)
.+-.++.+...+.|-++++.+....+...+- .+.. +.+-+.+ +|-.
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~W~ 101 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEE---DLEL------------------------------LEKWLPDIDNWA 101 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHH------------------------------HHHCCCCCCCHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHH------------------------------HHHHhccCCcch
Confidence 3446888888888888888887654332211 0111 2222222 2443
Q ss_pred HH-HHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHH
Q psy2915 132 IR-ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 210 (883)
Q Consensus 132 vr-~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a 210 (883)
+. ++|-+.++.+.... +.+.+.+.+...++++++||.|+.++.+.+.. +.. +.+.+.+...+.|++..|+.+.
T Consensus 102 ~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~~~d~~~~vq~ai 175 (213)
T PF08713_consen 102 TCDSLCSKLLGPLLKKH--PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEALLKDEEYYVQKAI 175 (213)
T ss_dssp HHHHHTHHHHHHHHHHH--GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHCTTGS-HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhh--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHHcCCchHHHHHHH
Confidence 33 45566666643222 55666788889999999999999988877655 222 2355666667789999999999
Q ss_pred HHHHHhccccCCcc
Q psy2915 211 VAAILLLPRKSYWQ 224 (883)
Q Consensus 211 ~~~L~ei~~~~~~~ 224 (883)
-.+|.++...+|..
T Consensus 176 ~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 176 GWALREIGKKDPDE 189 (213)
T ss_dssp HHHHHHHCTT-HHH
T ss_pred HHHHHHHHHhCHHH
Confidence 99999999877643
No 176
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=8.4 Score=43.65 Aligned_cols=268 Identities=15% Similarity=0.171 Sum_probs=135.7
Q ss_pred hhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH-------------hhhhhCCHHHHH
Q psy2915 351 QANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK-------------YAERIDNADELL 417 (883)
Q Consensus 351 ~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~-------------~~~~i~~~~~il 417 (883)
.=|.+..++.|.+|+-...+..+.-+...||.-+.+.-...+-++..|-+.++++ .+-....+++++
T Consensus 408 ~WN~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl 487 (881)
T COG5110 408 SWNSDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVL 487 (881)
T ss_pred hhhhHhhHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHH
Confidence 3467778888888876655666667776676555432223333444444444433 111123467788
Q ss_pred HHHhhhhcCCCHHHHHHHHH--HHHHHhhcCCc--hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhc-CCchhhhhhh
Q psy2915 418 ESFLEGFHDENTQVQLQLLT--AIVKLFLKRPT--DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLS-TGNTFYILLH 492 (883)
Q Consensus 418 ~~l~~~~~~~~~~vr~~~L~--al~Kl~~~~~~--~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~-~~~~~~~~~~ 492 (883)
+.+..-....+..+....++ +++-+|+..-. -...+++.++..........-+|=.|.-.--++. ...+.....+
T Consensus 488 ~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~e 567 (881)
T COG5110 488 ELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKDQVDDVEE 567 (881)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccchhHHHHH
Confidence 87777776666655555555 44555554321 1333344444433322222333333321111221 1122222222
Q ss_pred hhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHh--------hcCCCCHHHHH
Q psy2915 493 LTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVK--------DCEDSNPLIRA 564 (883)
Q Consensus 493 ~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~k--------dl~~~n~~vr~ 564 (883)
.++.+-..++... .-.++.+ .|... .+ .++++.+.. +++++...+..
T Consensus 568 ti~aIeg~ls~~~------eiLv~~c----------~Y~GT-----Gd----vl~Iq~lLhv~~e~~~D~~k~~ea~ie~ 622 (881)
T COG5110 568 TIMAIEGALSKHE------EILVKGC----------QYVGT-----GD----VLVIQSLLHVKDEFTGDTLKNEEALIES 622 (881)
T ss_pred HHHHhcchhhhhH------HHHHhhc----------eeccc-----Cc----HHHHHHHHhccCCCCcccchhhHHHHHH
Confidence 2222222221100 0001111 11100 00 112222222 11222333443
Q ss_pred HH-----HHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHH
Q psy2915 565 LA-----VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 639 (883)
Q Consensus 565 ~A-----L~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~ 639 (883)
.| +-++|.=... +-+.+..-..+.-.++++|+..=+|++-++..+|+. +..+.|.+...|.|..|..+
T Consensus 623 ~a~Lg~AliamGedig~---eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~shd~dl~v~~n 695 (881)
T COG5110 623 LALLGCALIAMGEDIGS---EMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERSSHDGDLNVIIN 695 (881)
T ss_pred HHHhhhHHhhhcchhhH---HHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHhccccchhHHHH
Confidence 33 3344432223 333444455556679999999999999888788876 35688999999999999999
Q ss_pred HHHHHHHHHhc
Q psy2915 640 AVAALSEMNEA 650 (883)
Q Consensus 640 a~~~l~~i~~~ 650 (883)
++-+++-++..
T Consensus 696 tIfamGLiGAG 706 (881)
T COG5110 696 TIFAMGLIGAG 706 (881)
T ss_pred HHHHhhccccC
Confidence 99999988754
No 177
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.35 E-value=20 Score=39.17 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhhHHhcH-----HHHHHHHHHcccCChhhHHHHHHHHhccCCCC---hHH-HHHH
Q psy2915 631 DSNPMVVANAVAALSEMNEASTSGVALIEMNA-----QTINKLLTALNECTEWGQVFILDSLSNYSPKD---DRE-AQSI 701 (883)
Q Consensus 631 D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~-----~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~---~~~-~~~i 701 (883)
.+++.++...+..+.++...+|...+.+.-.. ..+..+++.+...+++.+.+..++|..+.... ... ..++
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 46778888888888888877775554433211 25677788777789999998888888763222 111 1234
Q ss_pred HHHHh----HhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhc------cC--CcchHHHHHHHHH
Q psy2915 702 CERIT----PRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLL------SS--EPEVQYVALRNIN 768 (883)
Q Consensus 702 l~~l~----~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll------~~--~~niry~aL~~l~ 768 (883)
++.+. +.+++.+..+..-|++++..+. ..++++....+ ...+.+..++ ++ ...+.|-++-++=
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL----~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLL----RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHH----TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHh----CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 44444 4444455566677888887774 33455443332 3444555556 22 3346666665543
No 178
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.25 E-value=12 Score=41.92 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=96.6
Q ss_pred hhcccchhHHHHHHHHHHhhccCCch--------hhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC-----ChhhhhHHHH
Q psy2915 517 CMQTDNLELKKLVYLYLMNYAKSHPD--------MAIMAVNTFVKDCEDSNPLIRALAVRTMGCI-----RVDKITEYLC 583 (883)
Q Consensus 517 ll~s~~~~~kr~~yl~~~~~~~~~~~--------~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i-----~~~~~~~~l~ 583 (883)
.+-+++..+|..||-.+..+...... +-.+++-++.+|- .+...|.-|++.+-.+ +..++...++
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~~~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPKEIPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcccCCHHHH
Confidence 33344477788888887766443222 2233555655554 4577888888876543 4456778888
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
..|..+..+++...|..++..++.+.-.+|+.+...+-+..+.+.+.|+......+.+.++..+...
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999876555567777777777777777788888888765
No 179
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.77 E-value=40 Score=36.72 Aligned_cols=183 Identities=21% Similarity=0.270 Sum_probs=105.1
Q ss_pred HhhcCCCChHHHhhHHHHHHHHHhh--ccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC---CCchhhHH
Q psy2915 587 RKCLKDEDPYVRKTAAVCVAKLYDI--NAQLVED--QGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS---TSGVALIE 659 (883)
Q Consensus 587 ~~~l~d~~~~VRk~A~~al~~l~~~--~~~~~~~--~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~---~~~~~~~~ 659 (883)
...+.+++...|..|..++.++... .++.+.+ ..+.+.+.+.++-+...-+..|+.++.-++-+- .+.+..+.
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 3455788899999999999998864 2343321 134555666666666666666666666554331 12223332
Q ss_pred hcHHHHHHHHHHcccCC--hhhHHHHHHHH---hccCCCChHHHHHHHHHHh-----HhhcC----------CChHHHHH
Q psy2915 660 MNAQTINKLLTALNECT--EWGQVFILDSL---SNYSPKDDREAQSICERIT-----PRLAH----------ANAAVVLS 719 (883)
Q Consensus 660 l~~~~~~~L~~~l~~~~--~w~qi~iL~lL---~~~~~~~~~~~~~il~~l~-----~~l~~----------~~~aV~~e 719 (883)
.....|.+.+.+.. +=.+..++..| ..++-.+.++....++.+. ...+. .+++|+..
T Consensus 129 ---~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 129 ---ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred ---HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 33334444444433 22333444444 4445556555553333333 11221 13478888
Q ss_pred HHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhC
Q psy2915 720 AVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKR 774 (883)
Q Consensus 720 ai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~ 774 (883)
|+..-.-+...++.. .+ ...+....+.|..+|. .+.++|..|=+++..+-...
T Consensus 206 AL~aW~lLlt~~~~~-~~-~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 206 ALSAWALLLTTLPDS-KL-EDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHhcCCHH-HH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 877766665444431 23 3555667788888887 58899999999988776654
No 180
>KOG1243|consensus
Probab=88.70 E-value=3.4 Score=48.36 Aligned_cols=140 Identities=16% Similarity=0.242 Sum_probs=102.8
Q ss_pred chHHHHHhhcccchhHHHHHHHHHHhhccCCc--hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHH
Q psy2915 510 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHP--DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RVDKITEYLC 583 (883)
Q Consensus 510 ~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~--~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~~~~~~~l~ 583 (883)
..+.+++++++.|-.+|-...-++..|.+.-+ .+-..+.+++.-.+.|.|+.+|..+++++..+ +...+...++
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ell 410 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELL 410 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHH
Confidence 34556789999998888777777777755432 34445778888899999999999999998855 2233445566
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
..+.+.-.|.++-+|..-..|++++............++..+.+.+.|+-+.-|.+++.++....+
T Consensus 411 r~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred HHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 667777779999999999999999987643333444555666677788888888888887776654
No 181
>KOG2933|consensus
Probab=88.59 E-value=5.6 Score=42.12 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=82.0
Q ss_pred HHHHHHHHhhccCC-chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhhh---HHHHHHHHhhcCCCChHHHh
Q psy2915 527 KLVYLYLMNYAKSH-PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDKIT---EYLCEPLRKCLKDEDPYVRK 599 (883)
Q Consensus 527 r~~yl~~~~~~~~~-~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~~~---~~l~~~l~~~l~d~~~~VRk 599 (883)
+.-|+....+..-+ |+. +.+...+.|.|++....+-+|..+..+ +.+.+. ..++..|.+.++++..-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~~---al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPEA---ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHHH---HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 33455555554332 333 567777888888888888887766643 444333 33556777888899999999
Q ss_pred hHHHHHHHHHhhcccccccccHHHHHHHhhc---CCChhHHHHHHHHHHHHHhc
Q psy2915 600 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLS---DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~---D~d~~V~~~a~~~l~~i~~~ 650 (883)
+|+.++..++..+.+.+.+ .+-..+..||. +.+..|+..|-.+|..+..+
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 9999999999877766543 34444455553 55677888888888888753
No 182
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.34 E-value=0.61 Score=46.75 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=57.2
Q ss_pred hchhcCCCCHHHHHHHHHHhccCCchhhhHH--HHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccc
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCIRVDKITEY--LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE 187 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~--l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~ 187 (883)
+.+-+.++++.+|..|++.++.+-...++.+ .+|.+..+.+|+++.+|+.|...+..+++++|+.+.
T Consensus 13 Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 13 ILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 6777889999999999999998766555544 457888889999999999999999999999998874
No 183
>KOG1967|consensus
Probab=88.28 E-value=71 Score=39.06 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=89.0
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCc------hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCC------hhhh
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHP------DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIR------VDKI 578 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~------~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~------~~~~ 578 (883)
++.++..+.+.....|..-..+++.....-| ++ -...+.+.+.+.=+++.+|..+++++...- .++.
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~-~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQF-PMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccch-hhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence 3444555555555666555555555544433 23 334567778888899999999999988542 2456
Q ss_pred hHHHHHHHHhhcCCCC---hHHHhhHHHHHHHHHhhcccccc---cccHHHHHHHhhcCCChhHHHHHHHH
Q psy2915 579 TEYLCEPLRKCLKDED---PYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLSDSNPMVVANAVAA 643 (883)
Q Consensus 579 ~~~l~~~l~~~l~d~~---~~VRk~A~~al~~l~~~~~~~~~---~~~~~~~l~~lL~D~d~~V~~~a~~~ 643 (883)
...++|.+..+-.|++ --||-.|+.|+..+-+.-|-..- .+..+..+...|+|+..-||..|+.+
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 6667777766666665 56999999999988885543321 13466777778889999999888763
No 184
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.20 E-value=57 Score=37.82 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHhcCC-------Chhhh-h--HHHHHHHHhhcCCCChHHHhhHHHHHHHHH-hhcccccccccH
Q psy2915 558 SNPLIRALAVRTMGCI-------RVDKI-T--EYLCEPLRKCLKDEDPYVRKTAAVCVAKLY-DINAQLVEDQGF 621 (883)
Q Consensus 558 ~n~~vr~~AL~~L~~i-------~~~~~-~--~~l~~~l~~~l~d~~~~VRk~A~~al~~l~-~~~~~~~~~~~~ 621 (883)
++..+-+-|+..++.+ +-|.+ . ..+++.+..+++.+++.|=...+..+.++. +.+...+...+|
T Consensus 268 ~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W 342 (464)
T PF11864_consen 268 RDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDW 342 (464)
T ss_pred ccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCc
Confidence 4455556777777643 11221 1 238889999999888988888888888887 444333333344
No 185
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.08 E-value=3.8 Score=40.65 Aligned_cols=146 Identities=22% Similarity=0.254 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhh-------------Cccc--cccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccc-c
Q psy2915 167 VRKTAAVCVAKLYDI-------------NAQL--VEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSS-R 230 (883)
Q Consensus 167 VRk~A~~al~kl~~~-------------~p~~--~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~-~ 230 (883)
||..|..|+..+.+. -||. .+.+.....+.-++.|+++.||.+|+.++..+.+....+...-. .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566666666666654 2333 11112224455688899999999999999988765311110000 0
Q ss_pred c----cCCCCc-----HHHHHh--hccccccCCCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-
Q psy2915 231 K----KQICWN-----LPYLMN--LSVIYPAWPLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS- 296 (883)
Q Consensus 231 ~----~~~~w~-----q~~~l~--l~~~~~~~~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~- 296 (883)
. ...++. .+..+. |..... ...++.+ ...|++..+...-|.. .+...++..++..+..++.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~----~E~~~~~l~q~lK~la~Lv~~tPY~-rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQ----AEKSPPVLTQLLKCLAVLVQATPYH-RLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHh----cccccHHHHHHHHHHHHHHccCChh-hcCHhHHHHHHHHHHHHHhc
Confidence 0 000110 011111 111111 1234444 5666665555544432 3345577777777777774
Q ss_pred CChhHHHHHHHHHHHHHhhCc
Q psy2915 297 SEPEVQYVALRNINLIVQKRP 317 (883)
Q Consensus 297 ~~~~vr~~aL~~l~~l~~~~~ 317 (883)
.+++++..++..++.+....+
T Consensus 157 ~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CCCcHHHHHHHHHHHHHcCCC
Confidence 678999999999988877554
No 186
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=87.91 E-value=35 Score=37.70 Aligned_cols=85 Identities=12% Similarity=0.203 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHH
Q psy2915 339 LEKLDIMIRLASQANIAQVLSELKEYA-TEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELL 417 (883)
Q Consensus 339 ~~aL~iL~~l~~~~nv~~Il~eL~~~~-~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il 417 (883)
....++|..+-..+.-..|++.|..++ ++.++......+.+++.-..++ + .+..+.++
T Consensus 5 ~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---------------~------~~~~~~~~ 63 (339)
T PF12074_consen 5 VLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---------------S------SELPKKVV 63 (339)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---------------C------cCCCHHHH
Confidence 344556666666445566778887775 5677777777777777554332 0 12235577
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhh
Q psy2915 418 ESFLEGFHDENTQVQLQLLTAIVKLFL 444 (883)
Q Consensus 418 ~~l~~~~~~~~~~vr~~~L~al~Kl~~ 444 (883)
..+.+++.+..+.+|..-+.+++..+.
T Consensus 64 ~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 64 DAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 777888888777799999888888764
No 187
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=87.86 E-value=37 Score=35.29 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=98.8
Q ss_pred cCCCCHHHHHHHHHHhcCCChh--hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHh----
Q psy2915 555 CEDSNPLIRALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDL---- 628 (883)
Q Consensus 555 l~~~n~~vr~~AL~~L~~i~~~--~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~l---- 628 (883)
-+..++......+.+|+.+... ...+.+...+..+...++...+.-+..-+.++.+..+..++ ++..+...
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~---~L~~~L~~~~~r 86 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFP---FLQPLLLLLILR 86 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHH---HHHHHHHHHHhh
Confidence 3456677777777777766432 45555666666666777777777778888888887776651 22222222
Q ss_pred -----h-cCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHc-ccCChhhHHHHHHHHhccCCCChHHHHHH
Q psy2915 629 -----L-SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL-NECTEWGQVFILDSLSNYSPKDDREAQSI 701 (883)
Q Consensus 629 -----L-~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l-~~~~~w~qi~iL~lL~~~~~~~~~~~~~i 701 (883)
. .+.+..+..+....+..++...|+ ...+ .+..+...+ .+.++-.+...++.+..+++.+--+....
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~----ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~ 160 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVD----LLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSA 160 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHH----HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 1 244556777767788888887775 2333 333444555 56777788888999988886554444455
Q ss_pred HHHHhHhhcCCC-hHHHHHHHHHH
Q psy2915 702 CERITPRLAHAN-AAVVLSAVKVL 724 (883)
Q Consensus 702 l~~l~~~l~~~~-~aV~~eai~~i 724 (883)
...+.+.+.... +.|.-+..+.+
T Consensus 161 w~vl~~~l~~~~rp~v~~~l~~l~ 184 (234)
T PF12530_consen 161 WKVLQKKLSLDYRPLVLKSLCSLF 184 (234)
T ss_pred HHHHHHhcCCccchHHHHHHHHHH
Confidence 566666664333 34444333333
No 188
>KOG1967|consensus
Probab=87.11 E-value=7 Score=47.15 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=119.6
Q ss_pred HHhhc-CCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHH-HHh--hcccccccccHHHHHH
Q psy2915 551 FVKDC-EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAK-LYD--INAQLVEDQGFLDQLK 626 (883)
Q Consensus 551 l~kdl-~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~-l~~--~~~~~~~~~~~~~~l~ 626 (883)
+.|.+ --.+|..-..|.+.+..+.+|+.-+......--.+.|.++ +++.+-.+--| +|+ .+. +.+|.+.
T Consensus 801 v~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~-~~~r~~~a~~riLykQRfF~------~ivP~l~ 873 (1030)
T KOG1967|consen 801 VTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNP-LLKRKGHAEPRILYKQRFFC------DIVPILV 873 (1030)
T ss_pred HHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChH-HhhhccccchhHHHHHHHHH------hhHHHHH
Confidence 33433 3355777788899998888887776655544444455544 55444444432 333 223 3447777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCC----ChHHHHHHH
Q psy2915 627 DLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPK----DDREAQSIC 702 (883)
Q Consensus 627 ~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~----~~~~~~~il 702 (883)
+...-.+.+++.+-+.+|..+..+-|. +-..+-.|....-|++.+.-+++-.|...++.+..+... -++....++
T Consensus 874 ~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlv 952 (1030)
T KOG1967|consen 874 SKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLV 952 (1030)
T ss_pred HHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHH
Confidence 777766778888888999999887775 345556667777788888888888888888877775422 233344666
Q ss_pred HHHhHhhcCCC---hHHHHHHHHHHHHhhhhCCCCh--hhHHHHHHHhhh
Q psy2915 703 ERITPRLAHAN---AAVVLSAVKVLMKLMEMLPGEG--DFVSTLTKKLAP 747 (883)
Q Consensus 703 ~~l~~~l~~~~---~aV~~eai~~i~~~~~~~~~~~--~l~~~~~~~~~~ 747 (883)
+.+..+-.+.+ -+|+.-|.+++..+...+|.+. .+++++++.+.+
T Consensus 953 p~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 953 PYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIK 1002 (1030)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhh
Confidence 77766655443 3788888888887765455431 224444444433
No 189
>PF05536 Neurochondrin: Neurochondrin
Probab=86.61 E-value=35 Score=40.34 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHhcCCCh-hhhh-----HHHHHHHHhhcCCCCh-HHHhhHHHHHHHHHh--hcccccccccHHHHHHHh
Q psy2915 558 SNPLIRALAVRTMGCIRV-DKIT-----EYLCEPLRKCLKDEDP-YVRKTAAVCVAKLYD--INAQLVEDQGFLDQLKDL 628 (883)
Q Consensus 558 ~n~~vr~~AL~~L~~i~~-~~~~-----~~l~~~l~~~l~d~~~-~VRk~A~~al~~l~~--~~~~~~~~~~~~~~l~~l 628 (883)
+....+.+|+..|+.+.. |+++ -.-+|.+.+++...+. .+-.-|..|+..+.. .+++.+-..+-++.|.+.
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 446789999998887633 3332 1245778888877666 888899999988874 233333334455666666
Q ss_pred hcCCChhHHHHHHHHHHHHHhcCCCchhhHH----hcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCC
Q psy2915 629 LSDSNPMVVANAVAALSEMNEASTSGVALIE----MNAQTINKLLTALNECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 629 L~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~----l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~ 694 (883)
+.+ .+..+..|+.++..+..... ...|. .....+.++.+............++++|..+-+..
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 665 77778888888888775422 11222 22233444444444456667777888888875443
No 190
>KOG4500|consensus
Probab=84.50 E-value=74 Score=35.55 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=88.3
Q ss_pred chHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHh---------hcCCCCHHHHHHHHHHhcCCChhh---
Q psy2915 510 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVK---------DCEDSNPLIRALAVRTMGCIRVDK--- 577 (883)
Q Consensus 510 ~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~k---------dl~~~n~~vr~~AL~~L~~i~~~~--- 577 (883)
++..+...+.|+|...-.+|.++++.+.+.++--..++-+.+.. ---++|..++-+++.+|.++..|.
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 66677889999999999999999999998876544444333332 224567777788888888764433
Q ss_pred --hhHH-HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCCh-hHHHHHHHHHHHHHh
Q psy2915 578 --ITEY-LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA----QLVEDQGFLDQLKDLLSDSNP-MVVANAVAALSEMNE 649 (883)
Q Consensus 578 --~~~~-l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~----~~~~~~~~~~~l~~lL~D~d~-~V~~~a~~~l~~i~~ 649 (883)
+++. +...|...++...|.|-.+-.-.+.-+....+ +....+.++..|..--..+|. +|......++..+.+
T Consensus 396 a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk 475 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK 475 (604)
T ss_pred hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH
Confidence 2222 44556666777777777665555432222222 222334444555554455555 477777777777776
Q ss_pred c
Q psy2915 650 A 650 (883)
Q Consensus 650 ~ 650 (883)
+
T Consensus 476 H 476 (604)
T KOG4500|consen 476 H 476 (604)
T ss_pred h
Confidence 4
No 191
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=84.25 E-value=1e+02 Score=36.94 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHhcCCCh---------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh
Q psy2915 559 NPLIRALAVRTMGCIRV---------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL 629 (883)
Q Consensus 559 n~~vr~~AL~~L~~i~~---------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL 629 (883)
|+.-.-.|+|.++++.+ ..+-..+++.|...++++.-+.|.+|+.-+.++-.-.++-....+..+...+++
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 34444567777776643 223334567777778899999999999999888444444332233445556678
Q ss_pred cCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc
Q psy2915 630 SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE 674 (883)
Q Consensus 630 ~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~ 674 (883)
.+++.-|+..|.-++.-+..++.-...+-..+|....+++..-++
T Consensus 509 ~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~ 553 (970)
T COG5656 509 KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT 553 (970)
T ss_pred hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc
Confidence 888888888888888777655433345556777888888876544
No 192
>KOG1243|consensus
Probab=84.19 E-value=3 Score=48.79 Aligned_cols=165 Identities=15% Similarity=0.240 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHhCCC----------------Cccc----chHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhh
Q psy2915 27 KEKKREAVKKVIASMTVGK----------------DVSA----LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM 86 (883)
Q Consensus 27 ~~~~~~~l~kli~~~~~G~----------------~~~~----~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~ 86 (883)
+-.+.+.+..++..+-.|. |... +.|.+++++.+.|-.+|-+.--|+..|.+.-++-
T Consensus 288 ~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--- 364 (690)
T KOG1243|consen 288 EIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--- 364 (690)
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH---
Confidence 3345556666666666654 1111 3455567777777777777767777775543322
Q ss_pred hcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCc----hhhhHHHHHHHHhhcCC
Q psy2915 87 AFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRV----DKITEYLCEPLRKCLKD 162 (883)
Q Consensus 87 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~----~~~~~~l~~~v~~~l~d 162 (883)
.+|. ++ ++.+..-+.|+|+.+|..++++|..+.. ..+-..+...+-+.-.|
T Consensus 365 ~~~d----------------------~I---~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d 419 (690)
T KOG1243|consen 365 ILND----------------------QI---FPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPD 419 (690)
T ss_pred hhcc----------------------hh---HHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcc
Confidence 1122 11 2336677899999999999999987632 33556666777777789
Q ss_pred CChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccc
Q psy2915 163 EDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPR 219 (883)
Q Consensus 163 ~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~ 219 (883)
+++-+|-....|++|+........+.....-...+.+.|+=+--+.+++.++.....
T Consensus 420 ~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 420 EHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred ccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 999999999999999976532223444455566667778888888888888777654
No 193
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.67 E-value=59 Score=33.79 Aligned_cols=116 Identities=21% Similarity=0.137 Sum_probs=77.3
Q ss_pred HHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhhHHHHHHHHh-------hc--CCCChHHHhhH
Q psy2915 533 LMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV--DKITEYLCEPLRK-------CL--KDEDPYVRKTA 601 (883)
Q Consensus 533 ~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~--~~~~~~l~~~l~~-------~l--~d~~~~VRk~A 601 (883)
+..+...+.....++++.+....+.+....+..+++-++.+.. +...+.+.+.+.. .. .+..+.+....
T Consensus 25 L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~ 104 (234)
T PF12530_consen 25 LPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISI 104 (234)
T ss_pred HHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 3343333324445666676666666666667777777776522 2122222222222 11 24567777777
Q ss_pred HHHHHHHHhhcccccccccHHHHHHHhh-cCCChhHHHHHHHHHHHHHhc
Q psy2915 602 AVCVAKLYDINAQLVEDQGFLDQLKDLL-SDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 602 ~~al~~l~~~~~~~~~~~~~~~~l~~lL-~D~d~~V~~~a~~~l~~i~~~ 650 (883)
+.++..++...|+.. .++++.+..+| ++.++.++..++.++..+++.
T Consensus 105 a~s~~~ic~~~p~~g--~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 105 AASIRDICCSRPDHG--VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHhChhhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 788888899999844 57899999999 789999999999999999964
No 194
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.35 E-value=9 Score=37.46 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhC-ccccc--cccHHHHHHHHhcC-CChhHHHHHHHHHHhcccc
Q psy2915 145 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN-AQLVE--DQGFLDQLKDLLSD-SNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 145 ~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~-p~~~~--~~~~~~~L~~lL~D-~d~~V~~~a~~~L~ei~~~ 220 (883)
.......+...+.+.+.+++++-|-.++.-+..+.+.+ ++.+. -..|+..+.+.|+. ..+.+...|+.++..+...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34456667777888999999999998888888888776 66652 23477888888875 4566777888888877643
Q ss_pred CCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcCChh
Q psy2915 221 SYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPE 300 (883)
Q Consensus 221 ~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 300 (883)
-.... . ..+-+. ..-+..++.+++.++++ +.
T Consensus 99 ~~~~p---------------------------------~--l~Rei~-------------tp~l~~~i~~ll~l~~~-~~ 129 (165)
T PF08167_consen 99 IRGKP---------------------------------T--LTREIA-------------TPNLPKFIQSLLQLLQD-SS 129 (165)
T ss_pred hcCCC---------------------------------c--hHHHHh-------------hccHHHHHHHHHHHHhc-cc
Confidence 21111 0 001100 00234455566665554 55
Q ss_pred HHHHHHHHHHHHHhhCchhHHhcc
Q psy2915 301 VQYVALRNINLIVQKRPDILKHEM 324 (883)
Q Consensus 301 vr~~aL~~l~~l~~~~~~~~~~~~ 324 (883)
..-.++..+..+...+|..|++|.
T Consensus 130 ~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 130 CPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred cHHHHHHHHHHHHHHCCccccchH
Confidence 666899999999999999999874
No 195
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.11 E-value=45 Score=36.85 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=28.1
Q ss_pred HHhhhHHHHhcc-C--CcchHHHHHHHHHHHHhhCchhHhh
Q psy2915 743 KKLAPPLVTLLS-S--EPEVQYVALRNINLIVQKRPDILKH 780 (883)
Q Consensus 743 ~~~~~~L~~ll~-~--~~niry~aL~~l~~l~~~~~~~~~~ 780 (883)
...+..++.++- . .+++|-.+++.+.++....|..+..
T Consensus 203 ~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~ 243 (339)
T PF12074_consen 203 SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSK 243 (339)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHH
Confidence 456666776653 4 6789999999999999888875443
No 196
>KOG2213|consensus
Probab=82.65 E-value=83 Score=34.73 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=64.3
Q ss_pred ccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC
Q psy2915 520 TDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 591 (883)
Q Consensus 520 s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~ 591 (883)
......||++.-+++.|++.-|+++.-+++.-..-+.|.+.-+|.-|++-|..+...+....+.+.+.++|+
T Consensus 35 k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 35 KGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred hcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 455678999999999999999999999999988888889999999999999998777888888888888887
No 197
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.11 E-value=82 Score=34.30 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHhhcCCCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhc----CCChhHHHHHHHHHHHHHhc
Q psy2915 586 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLS----DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 586 l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~----D~d~~V~~~a~~~l~~i~~~ 650 (883)
+.+.+..+++++...|+..+..+....+..... .++++.+.+.+. .++..++..|+.++..+...
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 344788899999999999999998876554331 133444444444 45667889999999999875
No 198
>KOG0392|consensus
Probab=81.83 E-value=12 Score=46.77 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=76.6
Q ss_pred HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHh
Q psy2915 581 YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEM 660 (883)
Q Consensus 581 ~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l 660 (883)
...|.+..++.+.+++||.+|+.|++.+++......- ..+++.+..++.|.+..++..+...+.++...
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~---------- 884 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDA---------- 884 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHH----------
Confidence 5678888999999999999999999999886443322 34667777888888888877766655554421
Q ss_pred cHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhC
Q psy2915 661 NAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEML 731 (883)
Q Consensus 661 ~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~ 731 (883)
-+.. ...||.. -++.++..++.+...+|+..|.+++..+.+.+
T Consensus 885 ------~l~~---~l~~~~~-------------------Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 885 ------VLMV---GLVPYNP-------------------LLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred ------hhcc---cccccce-------------------eehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 0111 1233332 34566667777778888888888887775433
No 199
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=81.58 E-value=9.3 Score=42.64 Aligned_cols=51 Identities=10% Similarity=0.043 Sum_probs=38.8
Q ss_pred cCChhhHHHHHHHHhccCCC-ChHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Q psy2915 674 ECTEWGQVFILDSLSNYSPK-DDREAQSICERITPRLAHANAAVVLSAVKVL 724 (883)
Q Consensus 674 ~~~~w~qi~iL~lL~~~~~~-~~~~~~~il~~l~~~l~~~~~aV~~eai~~i 724 (883)
+..||++..+++++..|... +++....+++.+..++++.+..|..-|+.+|
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 56899999999999998644 4455668899999999999998887777664
No 200
>KOG2759|consensus
Probab=81.33 E-value=96 Score=34.61 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=50.9
Q ss_pred HHHHHHHhHhhcCCC-hHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHh
Q psy2915 699 QSICERITPRLAHAN-AAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 699 ~~il~~l~~~l~~~~-~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~ 772 (883)
.+++..|..+|+.++ +.++--|+.=|+++-.+.|......++.- .-..++.|++ .+||+||-||.++.++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g--gKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG--GKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc--hHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 478888999999887 67777777778877766676533333221 1124556777 699999999999988764
No 201
>KOG4524|consensus
Probab=80.69 E-value=64 Score=39.67 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhCchhHHhc-----ccceeeccCCCHHHHHHHHHHHHHhcChhh
Q psy2915 303 YVALRNINLIVQKRPDILKHE-----MKVFFVKYNDPIYVKLEKLDIMIRLASQAN 353 (883)
Q Consensus 303 ~~aL~~l~~l~~~~~~~~~~~-----~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~n 353 (883)
..++..++.++....+-|.++ ++.+.-+.++..+|+..|-..+..+++.-|
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~ 621 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALN 621 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcC
Confidence 357888888888888777776 355556778889999999888888886543
No 202
>KOG2933|consensus
Probab=80.15 E-value=11 Score=40.07 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=95.9
Q ss_pred cchHHHHHhhcccchhHHHHHHHHHHhhccCCc----hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhHH
Q psy2915 509 ALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHP----DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV---DKITEY 581 (883)
Q Consensus 509 ~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~----~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~---~~~~~~ 581 (883)
....++.+.+++++|..+--|.-.+..+..-.+ ..+..++=.+.+.++++...|-..|.-+++.+-+ ..+.+.
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999988888888877654433 3445577788899999999999999999887622 333333
Q ss_pred HHHHHHhhc---CCCChHHHhhHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 582 LCEPLRKCL---KDEDPYVRKTAAVCVAKLYDI-NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 582 l~~~l~~~l---~d~~~~VRk~A~~al~~l~~~-~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
+-..+..++ ...+-+||-.|-.+|-.+... .|. ...+.|...+...++.++..+...+....
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-----KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-----HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 333333333 456789999999999888664 343 34577788888899999988876555444
No 203
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=79.91 E-value=2.4 Score=28.18 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=22.0
Q ss_pred hHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q psy2915 595 PYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS 632 (883)
Q Consensus 595 ~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~ 632 (883)
|.||+.|+.+|+++ .+ +..++.|.+.|+|+
T Consensus 1 ~~vR~~aa~aLg~~--~~------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQL--GD------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHc--CC------HhHHHHHHHHhcCC
Confidence 57999999999987 22 33457788887763
No 204
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.62 E-value=14 Score=35.22 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=47.1
Q ss_pred hhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hh-hhHHHHHHHHhhcC-CCChHHHhhHHHHHHHHHhhc
Q psy2915 543 MAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV---DK-ITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLYDIN 612 (883)
Q Consensus 543 ~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~---~~-~~~~l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~ 612 (883)
-..-++..|+|-++++||.+...||..|-.+ |. .+ ....++..+.+++. ..++.||++++..+..-...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 3455888999999999999999999877633 11 11 12224445555554 577889988888876555443
No 205
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.04 E-value=14 Score=34.65 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=54.3
Q ss_pred cCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hhhhH-HHHHHHHhhcCC---CChHHHhhHHHHHH
Q psy2915 538 KSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV---DKITE-YLCEPLRKCLKD---EDPYVRKTAAVCVA 606 (883)
Q Consensus 538 ~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~---~~~~~-~l~~~l~~~l~d---~~~~VRk~A~~al~ 606 (883)
+..+.....++..|+|-++++||.++..||..|-.+ +. .+++. .++..+.+.+.. .++.||++++..+.
T Consensus 29 ~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 29 NLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred hCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 334455566889999999999999999999988743 22 22232 334456666654 58899999999888
Q ss_pred HHHhhccc
Q psy2915 607 KLYDINAQ 614 (883)
Q Consensus 607 ~l~~~~~~ 614 (883)
.-...++.
T Consensus 109 ~W~~~f~~ 116 (133)
T cd03561 109 AWSESFGG 116 (133)
T ss_pred HHHHHhcC
Confidence 77665554
No 206
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.12 E-value=5.8 Score=36.18 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=35.8
Q ss_pred CChHHHhhHHHHHHHHHhhccccc---ccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 593 EDPYVRKTAAVCVAKLYDINAQLV---EDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 593 ~~~~VRk~A~~al~~l~~~~~~~~---~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
.+|.+-..|+.=++.+.+.+|.-- .+......+-+++.++|+.|+..|+.++.++..
T Consensus 56 ~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 355555566666666666666532 223344566678888888888888888877753
No 207
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.96 E-value=8.5 Score=37.30 Aligned_cols=132 Identities=16% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHH
Q psy2915 592 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTA 671 (883)
Q Consensus 592 d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~ 671 (883)
...+.+|..|..++.++.+..++... ..+-+.+..++.+.+.+-...++.++..+.+-.|+...-+-........+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 56788999999999999877776664 34566677788777777888888888888865443222221222333344444
Q ss_pred cc--cCChhhHHHHHHHHhccCCCChHH---HHHHHHHHhHhhc-CCChH-HHHHHHHHH
Q psy2915 672 LN--ECTEWGQVFILDSLSNYSPKDDRE---AQSICERITPRLA-HANAA-VVLSAVKVL 724 (883)
Q Consensus 672 l~--~~~~w~qi~iL~lL~~~~~~~~~~---~~~il~~l~~~l~-~~~~a-V~~eai~~i 724 (883)
.. ..++-.|..++++|..-+.+...- ....++.|....+ +.+.. |..-|+-.+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 43 456666777777777655443211 1244555566663 33344 444444333
No 208
>KOG2973|consensus
Probab=77.78 E-value=1e+02 Score=32.95 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=44.3
Q ss_pred CCCChHHHhhHHHHHHHHHh--hcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcCC
Q psy2915 591 KDEDPYVRKTAAVCVAKLYD--INAQLVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~--~~~~~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.+++|.+||.-+.|+..++. .+.+.+.+...-+.++.+=. .+|+.++.+.-.+..-+....|
T Consensus 254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~ 318 (353)
T KOG2973|consen 254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEP 318 (353)
T ss_pred CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhccc
Confidence 37899999999999998886 45566655555566665544 5788888877776666665444
No 209
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=77.50 E-value=16 Score=34.65 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=52.6
Q ss_pred HHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhh-----hHHHHHHHHhhcCCC-C-hH--HHhh
Q psy2915 533 LMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDKI-----TEYLCEPLRKCLKDE-D-PY--VRKT 600 (883)
Q Consensus 533 ~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~~-----~~~l~~~l~~~l~d~-~-~~--VRk~ 600 (883)
+....+.+++...-++..|+|-++++||.+...||..|-.+ +++.+ ...++..+.+++.++ . +. ||++
T Consensus 29 icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k 108 (140)
T PF00790_consen 29 ICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEK 108 (140)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHH
Confidence 33344445666677899999999999999999999887743 22222 222455666655532 2 22 8999
Q ss_pred HHHHHHHHHhhc
Q psy2915 601 AAVCVAKLYDIN 612 (883)
Q Consensus 601 A~~al~~l~~~~ 612 (883)
+...+..-...+
T Consensus 109 ~l~ll~~W~~~f 120 (140)
T PF00790_consen 109 ILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 887776655544
No 210
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=76.92 E-value=3.6 Score=27.26 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCC
Q psy2915 165 PYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS 202 (883)
Q Consensus 165 ~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~ 202 (883)
+.||+.|+.+++++- ++..++.|.++|+|+
T Consensus 1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLG--------DEEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcCC
Confidence 469999999999772 345667888888764
No 211
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.79 E-value=20 Score=34.22 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch----hhhhHHHHHHHHhhcCC-CChHHHhhHHHHHHHHH
Q psy2915 539 SHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV----DKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLY 609 (883)
Q Consensus 539 ~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~----~~~~~~l~~~l~~~l~d-~~~~VRk~A~~al~~l~ 609 (883)
.++.-..-++..|+|-++++||.+...||..|-.+ |. .-....++..+.+++.+ .++.||.++...+..-.
T Consensus 30 ~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 30 SDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 33444556888999999999999999999877643 11 11223355667777776 78888888888776554
Q ss_pred hhc
Q psy2915 610 DIN 612 (883)
Q Consensus 610 ~~~ 612 (883)
..+
T Consensus 110 ~~f 112 (144)
T cd03568 110 DEF 112 (144)
T ss_pred HHh
Confidence 443
No 212
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=76.52 E-value=4.4 Score=29.09 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=21.7
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHHH
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLY 609 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l~ 609 (883)
.+|.+.+++.++++.||+.|+-++..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4567777888888888888888887664
No 213
>KOG2213|consensus
Probab=75.25 E-value=1.4e+02 Score=33.08 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHHHHhhCchhHHhcc-cceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhh
Q psy2915 297 SEPEVQYVALRNINLIVQKRPDILKHEM-KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYAT 366 (883)
Q Consensus 297 ~~~~vr~~aL~~l~~l~~~~~~~~~~~~-~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~ 366 (883)
....-+-+|-+-|.+.-...|++-...+ -.+.|..|+|..||++|+.=|-.+|..++...+.+.|.+.+.
T Consensus 36 ~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 3445667777888888888888766654 357788999999999999999999999999998888887754
No 214
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.78 E-value=12 Score=34.30 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=35.1
Q ss_pred hhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc
Q psy2915 575 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 575 ~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
++.-...+...+.+.|+|++|+|+.||+..+-.++..+++.+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 445566778889999999999999999999999998887655
No 215
>KOG2038|consensus
Probab=74.57 E-value=1.6e+02 Score=35.49 Aligned_cols=74 Identities=20% Similarity=0.092 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc
Q psy2915 150 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR 225 (883)
Q Consensus 150 ~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~ 225 (883)
...+..+..+..|+=+.||+.|+..++-+..--|+.- ..++-.+.+-|.|++.-+...|..+|..+...+|.+.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce
Confidence 3344444555677889999999999999888888763 4466777778889999999999999999998888765
No 216
>KOG2137|consensus
Probab=74.43 E-value=1.3e+02 Score=36.06 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=80.0
Q ss_pred chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----ChhhhhHHHHHHHHhhc-CCCChHHHhhHHHHHHHHHhhcccc
Q psy2915 541 PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQL 615 (883)
Q Consensus 541 ~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~~~~~~~l~~~l~~~l-~d~~~~VRk~A~~al~~l~~~~~~~ 615 (883)
++...-+.+.|..-+++.+..++..+|+.++.. ..+-+.+.++|.|+.+. .+.+.+||-.++.|++.+.+.-...
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888889999999999999988854 45667888899988765 5789999999999999998543222
Q ss_pred cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 616 VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 616 ~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
... +.+..+.+...-.||.+....+.+...+.-..+
T Consensus 464 ~v~-d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 464 AVL-DELLPILKCIKTRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc
Confidence 111 223444445556788888777777666664433
No 217
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=74.31 E-value=1e+02 Score=34.96 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=107.8
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccc----cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQL----VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTIN 666 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~----~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~ 666 (883)
.+++|.=-.-...-+.++....+.. ..+.+|+..|..+++.+||.-|...-..+..+-...++ ....+...+.
T Consensus 100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~---~r~~Ir~~i~ 176 (409)
T PF01603_consen 100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN---LRSFIRKSIN 176 (409)
T ss_dssp --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT---THHHHHHHHH
T ss_pred cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHH
Confidence 4556655555555555555433221 23567999999999999999999999999998765432 2222223222
Q ss_pred HHH-HHcc-cCChhhHHHHHHHHhccCC----CChHHHHHHH-HHHhHhhcCCCh----HHHHHHHHHHHHhhhhCCCCh
Q psy2915 667 KLL-TALN-ECTEWGQVFILDSLSNYSP----KDDREAQSIC-ERITPRLAHANA----AVVLSAVKVLMKLMEMLPGEG 735 (883)
Q Consensus 667 ~L~-~~l~-~~~~w~qi~iL~lL~~~~~----~~~~~~~~il-~~l~~~l~~~~~----aV~~eai~~i~~~~~~~~~~~ 735 (883)
..+ +-+. ...+.+...+|++++.+.. .-.++...++ ..+.++....+. .-+..|+..++. .+|
T Consensus 177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~------kdp 250 (409)
T PF01603_consen 177 NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE------KDP 250 (409)
T ss_dssp HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH------H-G
T ss_pred HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH------hCc
Confidence 222 2222 3567788889999988632 2334555544 566777665554 333334444333 344
Q ss_pred hhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCc-hhHhhcc----c-eeEEccCCCHHHHHHHHHH
Q psy2915 736 DFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRP-DILKHEM----K-VFFVKYNDPIYVKLEKLDI 802 (883)
Q Consensus 736 ~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~-~~~~~~~----~-~~~~l~~dd~~Ir~~~l~l 802 (883)
.+...+++.+.. .+=.+++.-.-.-|.-+..++...+ ..+.+.. . .-.|+.++...|.-+|+.+
T Consensus 251 ~l~~~~i~~llk---~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~ 320 (409)
T PF01603_consen 251 SLAEPVIKGLLK---HWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYF 320 (409)
T ss_dssp GGHHHHHHHHHH---HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGG
T ss_pred hhHHHHHHHHHH---hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 554544443332 3323455555556677777777553 3333322 2 2236777777777777754
No 218
>KOG2973|consensus
Probab=73.79 E-value=52 Score=35.14 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=64.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCChh------hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhc--cccccccc
Q psy2915 549 NTFVKDCEDSNPLIRALAVRTMGCIRVD------KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQLVEDQG 620 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~~L~~i~~~------~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~--~~~~~~~~ 620 (883)
+.+.+.+.+.+|.||.+|.+.+..+... ......++.+.++++++.+ -+-|+.++.++...- ...+- ..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll-~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL-QD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH-HH
Confidence 3456677899999999999888776443 1234567889999999888 566777777776532 11111 12
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 621 FLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 621 ~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
|...+...+-|+....-..++.++..+.+.
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 555555566666555556666667777654
No 219
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=72.48 E-value=5.7 Score=25.77 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCChhhhhHHHHHHH
Q psy2915 562 IRALAVRTMGCIRVDKITEYLCEPL 586 (883)
Q Consensus 562 vr~~AL~~L~~i~~~~~~~~l~~~l 586 (883)
||..|..+||.+++++-.+.++..+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6899999999999988777655443
No 220
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=72.28 E-value=13 Score=37.36 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=50.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCChh-hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc
Q psy2915 550 TFVKDCEDSNPLIRALAVRTMGCIRVD-KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 550 ~l~kdl~~~n~~vr~~AL~~L~~i~~~-~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
.+.+=..|+|+.+|+.|.-.+...... ...+.++..+...+.|++.+||++..-+|..+++.+|+.+
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v 176 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERV 176 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 445556678888888887777664333 4566677778888888999999999999999988887765
No 221
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.58 E-value=28 Score=32.59 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=58.0
Q ss_pred hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc----ccccHHHHHHHhhcC---CChhHHHHHHHHHHHHHh
Q psy2915 577 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV----EDQGFLDQLKDLLSD---SNPMVVANAVAALSEMNE 649 (883)
Q Consensus 577 ~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~----~~~~~~~~l~~lL~D---~d~~V~~~a~~~l~~i~~ 649 (883)
.-....+..|++.+.+++|.|...|+..+-.+.+..+..+ ...+|...+..++.+ .++.|+.-++.++..-..
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3445566789999999999999999998888887655433 234677788888875 478899999998888875
Q ss_pred cCC
Q psy2915 650 AST 652 (883)
Q Consensus 650 ~~~ 652 (883)
..+
T Consensus 113 ~f~ 115 (133)
T cd03561 113 SFG 115 (133)
T ss_pred Hhc
Confidence 443
No 222
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.86 E-value=34 Score=32.32 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=49.8
Q ss_pred CCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hhhh-HHHHHHHHhhcCC------CChHHHhhHHHH
Q psy2915 539 SHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV---DKIT-EYLCEPLRKCLKD------EDPYVRKTAAVC 604 (883)
Q Consensus 539 ~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~---~~~~-~~l~~~l~~~l~d------~~~~VRk~A~~a 604 (883)
.+++...-++..|+|-++++||.+...||..|-.+ |. .+++ ..++..+.+++.. .++.||.+.+..
T Consensus 31 ~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~l 110 (139)
T cd03567 31 KEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIEL 110 (139)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 34444556888899999999999999998776533 21 2222 3355566666642 578899988877
Q ss_pred HHHHHhhcc
Q psy2915 605 VAKLYDINA 613 (883)
Q Consensus 605 l~~l~~~~~ 613 (883)
+..-...++
T Consensus 111 i~~W~~~f~ 119 (139)
T cd03567 111 LYSWTLELP 119 (139)
T ss_pred HHHHHHHhc
Confidence 765444433
No 223
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=70.40 E-value=8.8 Score=38.56 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=46.9
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCc
Q psy2915 154 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYW 223 (883)
Q Consensus 154 ~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~ 223 (883)
+.+.+...++++++||.|..++.+.+....+ . ..+++.+..++.|++..|..+.-.+|.++....|.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-F--DLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-H--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 4566677788888888888888776665111 1 23556667777778888888888888888777664
No 224
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=70.38 E-value=58 Score=31.63 Aligned_cols=32 Identities=6% Similarity=0.213 Sum_probs=19.0
Q ss_pred HHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHh
Q psy2915 741 LTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 741 ~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~ 772 (883)
.+..+.|.++..+. .++..|=..+..|..|+.
T Consensus 125 ~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 125 YLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34456676666665 344666666666666554
No 225
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=70.38 E-value=8.1 Score=27.69 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=27.7
Q ss_pred cccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 618 DQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 618 ~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
+...++.|.++|.++++.|+..|+.++..++
T Consensus 10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999886
No 226
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.77 E-value=10 Score=34.66 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=44.4
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHHhhhCccccc---cccHHHHHHHHhcCCChhHHHHHHHHHHhcc
Q psy2915 153 CEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQLVE---DQGFLDQLKDLLSDSNPMVVANAVAAILLLP 218 (883)
Q Consensus 153 ~~~v~~~l-~d~~~~VRk~A~~al~kl~~~~p~~~~---~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~ 218 (883)
+..+.+++ .+.+|.+---|+.=++.+.+.+|+... +-+.-+.+.++++++|+.|+..|+.++..+.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33444555 334677777788888888888886532 3345577888888999999999988877653
No 227
>KOG4199|consensus
Probab=68.52 E-value=1.8e+02 Score=31.58 Aligned_cols=262 Identities=11% Similarity=0.121 Sum_probs=137.6
Q ss_pred ccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHH
Q psy2915 115 CSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQ 194 (883)
Q Consensus 115 ~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~ 194 (883)
+..++.+.+.|.| +--.++|-|+++.=... .+.++.. ...-+.++..|=+++..++.++.+..|+... ......
T Consensus 76 ~~E~s~ll~~l~d--~ck~~~A~r~la~~~ga--~~~~it~-~~la~~~~~~~l~ksL~al~~lt~~qpdl~d-a~g~~v 149 (461)
T KOG4199|consen 76 LEETTELLEQLAD--ECKKSLAHRVLAGKNGA--HDALITL-LELAESPNESVLKKSLEAINSLTHKQPDLFD-AEAMAV 149 (461)
T ss_pred hHHHHHHHHHHHH--HHhhhHHHHHHhccCCC--cchhhhH-HHHhhCCchhHHHHHHHHHHHhhcCCcchhc-cccHHH
Confidence 3344446777774 66778999998764321 1222222 2235678888999999999999999999985 455677
Q ss_pred HHHHhcC--CChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHh-hc-cccccCCCCCCCchH-HHHHHHHHH
Q psy2915 195 LKDLLSD--SNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMN-LS-VIYPAWPLSTINPHT-PLLKVLMKL 269 (883)
Q Consensus 195 L~~lL~D--~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~-l~-~~~~~~~l~~~n~~v-~~~~~l~~l 269 (883)
+.++|.+ ++..+....+..+..-|-.+...+.+ +...+++. +. -+... ....-| +...++.-+
T Consensus 150 vv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~--------~m~~~il~Li~~~l~~~----gk~~~VRel~~a~r~l 217 (461)
T KOG4199|consen 150 VLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQL--------FMELKILELILQVLNRE----GKTRTVRELYDAIRAL 217 (461)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHH--------HHHhhHHHHHHHHHccc----CccHHHHHHHHHHHHh
Confidence 7888875 45666666665555444333222211 11111222 10 01100 011111 211111111
Q ss_pred hhcCCCC--------hhhHHHHHH-HHhHHHHHhhc--CChhHHHHHHHHHHHHHhhCc--hhHHhc--c-cceeeccC-
Q psy2915 270 MEMLPGE--------GDFVSTLTK-KLAPPLVTLLS--SEPEVQYVALRNINLIVQKRP--DILKHE--M-KVFFVKYN- 332 (883)
Q Consensus 270 ~~~~~~~--------~~~~~~~~~-~~~~~L~~lL~--~~~~vr~~aL~~l~~l~~~~~--~~~~~~--~-~~~~~l~~- 332 (883)
. .+.+ -++-.+..+ .....|+..+. -+|++-.....++..++-++. .-+.+. + ..|.|+.|
T Consensus 218 ~--~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 218 L--TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDS 295 (461)
T ss_pred c--CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhh
Confidence 1 0110 000011111 11233444442 246666666666666655431 111111 2 34456655
Q ss_pred CCHH---HHHHHHHHHHHhcChhhHHH-HHH-----HHHHhh--hhcCHHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy2915 333 DPIY---VKLEKLDIMIRLASQANIAQ-VLS-----ELKEYA--TEVDVDFVRKAVRAIGRCAIKVEQSAERCVS 396 (883)
Q Consensus 333 ~~~~---Ir~~aL~iL~~l~~~~nv~~-Il~-----eL~~~~--~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~ 396 (883)
.+.. .-+.++.+|-+++..+.++. ||+ .+...+ ...||.+..++.-.|+.++.+.|..+..+++
T Consensus 296 n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie 370 (461)
T KOG4199|consen 296 NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE 370 (461)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh
Confidence 3333 44788999999997766644 322 222222 2457889999999999999998876655443
No 228
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.90 E-value=51 Score=30.87 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=52.5
Q ss_pred HHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hhh-hHHHHHHHHhhcCCC--ChHHHhhHH
Q psy2915 533 LMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV---DKI-TEYLCEPLRKCLKDE--DPYVRKTAA 602 (883)
Q Consensus 533 ~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~---~~~-~~~l~~~l~~~l~d~--~~~VRk~A~ 602 (883)
+....+.+++...-++..|+|-++++||.+...||..|-.+ |. .++ ...++..+.+.+.++ .+.||++++
T Consensus 24 icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil 103 (133)
T smart00288 24 ICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRIL 103 (133)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444455666677889999999999999999999988743 11 122 222555666666643 234888888
Q ss_pred HHHHHHHhhc
Q psy2915 603 VCVAKLYDIN 612 (883)
Q Consensus 603 ~al~~l~~~~ 612 (883)
..+..-+..+
T Consensus 104 ~li~~W~~~f 113 (133)
T smart00288 104 ELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHH
Confidence 7776555443
No 229
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.65 E-value=43 Score=31.86 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=59.0
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc----ccccHHHHHHHhhcC-CChhHHHHHHHHHHHHHhcC
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV----EDQGFLDQLKDLLSD-SNPMVVANAVAALSEMNEAS 651 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~----~~~~~~~~l~~lL~D-~d~~V~~~a~~~l~~i~~~~ 651 (883)
-....+..|++.+.+++|.|-..|+.-+-.+.+..+..+ ...+|.+.|..++.+ .++.|+.-++.++..-....
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 345566788899999999999999988888887654433 346799999999998 78899999999988887543
No 230
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=66.27 E-value=8.1 Score=25.04 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCchhhhHHHHHHH
Q psy2915 132 IRALAVRTMGCIRVDKITEYLCEPL 156 (883)
Q Consensus 132 vr~lALr~L~~i~~~~~~~~l~~~v 156 (883)
||..|.++||.+++++.++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6889999999999988888776553
No 231
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=66.20 E-value=3e+02 Score=33.26 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhcC---CCchhhHHhcHHHHHHHHHHcccCChhhHH
Q psy2915 623 DQLKDLLSDSNPMVVANAVAALSEMNEAS---TSGVALIEMNAQTINKLLTALNECTEWGQV 681 (883)
Q Consensus 623 ~~l~~lL~D~d~~V~~~a~~~l~~i~~~~---~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi 681 (883)
+.+.++|.-.|+.+...++.++..+.-.. .++...+.+....+.++...+.+.+.|...
T Consensus 313 ~~i~~lL~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~ 374 (696)
T PF14838_consen 313 PDIAQLLLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQ 374 (696)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 44556677788888888888777664322 233444555566666666666666666655
No 232
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.41 E-value=1.9e+02 Score=30.64 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHHHHHHHHcccCChhhHHHHHHHHhccCCCC---hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHh
Q psy2915 663 QTINKLLTALNECTEWGQVFILDSLSNYSPKD---DREAQSICERITPRLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 663 ~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~---~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~ 727 (883)
..+..++..+....+|.|.++|++|..+-+.- ..-..+++.++.++++.....-..+....++..
T Consensus 188 ~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 188 QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVTR 255 (262)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 44555666666778999999888888764321 113346788888888777766666666666655
No 233
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=65.08 E-value=85 Score=30.46 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHhc-CCChhHHHHHHHHHHhccccCCccc
Q psy2915 193 DQLKDLLS-DSNPMVVANAVAAILLLPRKSYWQR 225 (883)
Q Consensus 193 ~~L~~lL~-D~d~~V~~~a~~~L~ei~~~~~~~~ 225 (883)
+.|.++|. +.++.+|..|+.+++-++--+|..+
T Consensus 13 ~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~ 46 (160)
T PF11865_consen 13 DILLNILKTEQSQSIRREALRVLGILGALDPYKH 46 (160)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH
Confidence 55666554 5668888888888888876666544
No 234
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.05 E-value=2.2e+02 Score=31.32 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHHHhhc------ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCch
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN------AQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV 655 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~------~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~ 655 (883)
+.....+++.+++-..|+.++.-|+.+...- ...+.+++....+-.+|.|+...++..|..++--...+...+
T Consensus 210 ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~- 288 (335)
T PF08569_consen 210 FFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP- 288 (335)
T ss_dssp HHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B-
T ss_pred HHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC-
Confidence 4445666677777777777777777665311 122334455677888999999999999999888777653333
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCC
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~ 694 (883)
+-+..++... +-+++++|..+.+..
T Consensus 289 -------~~I~~iL~~N-------r~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 289 -------PPIVDILIKN-------REKLLRFLKDFHTDR 313 (335)
T ss_dssp -------HHHHHHHHHT-------HHHHHHHHHTTTTT-
T ss_pred -------hHHHHHHHHH-------HHHHHHHHHhCCCCC
Confidence 2333444332 778899999987654
No 235
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=64.20 E-value=4.8e+02 Score=34.88 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=82.1
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCch
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV 655 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~ 655 (883)
.++.+.++.....++.++++.||.-+......++........ .+.+..|...+.+++..-+.+|+.+|.+++...| +
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~q-qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~--~ 506 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQ-QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP--S 506 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H--H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH--H
Confidence 445667777778888999999999999998888887754333 4566777666666666666899999999997533 2
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCC---CC-hHHHHHHHHHHhHhhcCCCh
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSP---KD-DREAQSICERITPRLAHANA 714 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~---~~-~~~~~~il~~l~~~l~~~~~ 714 (883)
..... -..+..+++.+...++---.++.++|..++- .. ..-..++--.+.+.+.+++.
T Consensus 507 ~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~ 568 (1426)
T PF14631_consen 507 ELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNP 568 (1426)
T ss_dssp HHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSH
T ss_pred HHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcH
Confidence 22222 2344455555555555444456676666541 11 11223444566677877777
No 236
>KOG2549|consensus
Probab=64.17 E-value=44 Score=38.42 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=57.2
Q ss_pred CChhhhhHHHHHHHHhhc----------CCCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhHHH
Q psy2915 573 IRVDKITEYLCEPLRKCL----------KDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSD--SNPMVVA 638 (883)
Q Consensus 573 i~~~~~~~~l~~~l~~~l----------~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D--~d~~V~~ 638 (883)
+.-......++|.|..|+ .|.+|.+|.=|+.-+..+++.+++.... ++++..+.+.+.| .......
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 444556777788887776 3778999999999999999988877642 2344445555555 4678899
Q ss_pred HHHHHHHHHHh
Q psy2915 639 NAVAALSEMNE 649 (883)
Q Consensus 639 ~a~~~l~~i~~ 649 (883)
.|+..|.+++.
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 99999999885
No 237
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=63.64 E-value=1.2e+02 Score=33.43 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=77.3
Q ss_pred CcccchHHHHHhhcccchhHHHHHHHHHHhhccCC---chhhHhHHHHHHhhcCCCCHHH---HHHHHHHhc---CCChh
Q psy2915 506 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSH---PDMAIMAVNTFVKDCEDSNPLI---RALAVRTMG---CIRVD 576 (883)
Q Consensus 506 ~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~---~~~~~l~~n~l~kdl~~~n~~v---r~~AL~~L~---~i~~~ 576 (883)
+...+|..+++.+.+++...++.++-.+..=.... |.+...+...+..-+.. |-.. ..-.+++|- ++.-.
T Consensus 175 Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 175 ELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchH
Confidence 33445666666666655555555444433322211 22222233333322221 2111 122222222 34445
Q ss_pred hhhHHHHHHHHhhc----------CCCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcCC-Ch-hHHHHHHH
Q psy2915 577 KITEYLCEPLRKCL----------KDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSDS-NP-MVVANAVA 642 (883)
Q Consensus 577 ~~~~~l~~~l~~~l----------~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D~-d~-~V~~~a~~ 642 (883)
.....++|.+..|+ .+.+|.+|.-|+..+..+++.++.... .++....+.+.+.|+ .+ .....|+.
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 56666888888777 356799999999999999998766643 123443444444443 33 44788888
Q ss_pred HHHHHHh
Q psy2915 643 ALSEMNE 649 (883)
Q Consensus 643 ~l~~i~~ 649 (883)
.|..++.
T Consensus 334 GL~~lG~ 340 (343)
T cd08050 334 GLSALGP 340 (343)
T ss_pred HHHHhCc
Confidence 8888864
No 238
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=62.85 E-value=1.6e+02 Score=31.61 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc----ccc----cHHHHHHHhhc--------CCChhHHHH
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV----EDQ----GFLDQLKDLLS--------DSNPMVVAN 639 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~----~~~----~~~~~l~~lL~--------D~d~~V~~~ 639 (883)
.+..+-++|.+..++.|.++.+|..++.++..+....|... ... -+-+.+..+|. |+...+...
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 45667799999999999999999999999999988655433 222 23344555554 667777777
Q ss_pred HHHHHHHHHh
Q psy2915 640 AVAALSEMNE 649 (883)
Q Consensus 640 a~~~l~~i~~ 649 (883)
|..++..+.+
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 7777777754
No 239
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=61.14 E-value=1.2e+02 Score=31.58 Aligned_cols=71 Identities=24% Similarity=0.370 Sum_probs=45.3
Q ss_pred hhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhH
Q psy2915 628 LLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITP 707 (883)
Q Consensus 628 lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~ 707 (883)
||+|+|+.|...++.+...+-+ ..++.+...=....-|....-++ +.+..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~-------------~~~~~i~~~~~~~~~W~~~~~lK-----------------~~Il~ 50 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYP-------------LVFRWICVNPSDEQLWESMNELK-----------------DRILS 50 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHH-------------HHHHHHS--HHHHHHHHHHHHHH-----------------HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH-------------HHHHHHcCCchHHHHHHHHHHHH-----------------HHHHH
Confidence 5789999999999988777753 23333311111234565555444 55666
Q ss_pred hhcCCChHHHHHHHHHHHHhh
Q psy2915 708 RLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 708 ~l~~~~~aV~~eai~~i~~~~ 728 (883)
.+.+.+++|...|++.+-.+.
T Consensus 51 ~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 51 LWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp GGGSSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 677888899999988887653
No 240
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=61.09 E-value=1.4e+02 Score=34.83 Aligned_cols=141 Identities=12% Similarity=0.034 Sum_probs=86.1
Q ss_pred HHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHH
Q psy2915 585 PLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQT 664 (883)
Q Consensus 585 ~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~ 664 (883)
.......|-++-+|--+.++++-.....|+.+....+.....-+|.|.+.+||.-....+..++.+.|......+.....
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF 358 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF 358 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 34455678899999999999999989999988655566666668999999999999999999999888665333333333
Q ss_pred HHHHHHHcc-cCChhhHHH---HHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHh
Q psy2915 665 INKLLTALN-ECTEWGQVF---ILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 665 ~~~L~~~l~-~~~~w~qi~---iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~ 727 (883)
-.++++.+- +.+- .++- .+..+..++..+..+...+..++....- .+--+..|++..++++
T Consensus 359 k~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~p-d~r~~~~E~v~~icK~ 423 (740)
T COG5537 359 KDRILEFLRTDSDC-VRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIP-DSRENIVESVESICKI 423 (740)
T ss_pred HHHHHHHHhhccch-hhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC-cchHHHHHHHHHHHHH
Confidence 333333221 2232 3333 3333444455454444333333222111 1112355666666655
No 241
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=60.94 E-value=1.5e+02 Score=33.94 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCchHHHH---HHHHHH--------HhhcCCCChhhhhhhHHHHHhhcCCc
Q psy2915 427 ENTQVQLQLLTAIVKLFLKRPTDTQEL---VQQVLS--------LATQDSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 427 ~~~~vr~~~L~al~Kl~~~~~~~~~~~---l~~ll~--------~~~~d~~~~evrdrA~~y~~ll~~~~ 485 (883)
..+.+-..++|+++|+..+.+.-...+ +.++-+ ++..+.++..|..||.+++++++.+.
T Consensus 379 ~~~rl~~~lmt~laKLAsr~~dl~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~Ps 448 (459)
T PF14764_consen 379 SQPRLMTVLMTALAKLASRSQDLIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMPS 448 (459)
T ss_pred CchhHHHHHHHHHHHHHHhCHhhhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCch
Confidence 356677778999999998876422221 111222 11244568889999999999998763
No 242
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=60.47 E-value=43 Score=39.23 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=73.9
Q ss_pred hchhcCCC--CHHHHHHHHHHh---ccC---CchhhhHHHHHHHH----hhcC--------CCChhHHHHHHHHHHHHhh
Q psy2915 121 FVKDCEDS--NPLIRALAVRTM---GCI---RVDKITEYLCEPLR----KCLK--------DEDPYVRKTAAVCVAKLYD 180 (883)
Q Consensus 121 l~kDL~~~--n~~vr~lALr~L---~~i---~~~~~~~~l~~~v~----~~l~--------d~~~~VRk~A~~al~kl~~ 180 (883)
+...+.++ +...|.+++.++ ..+ ..+..+..+.+.|. +.+. ..+...|..|..|+|.+.+
T Consensus 324 ~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~ 403 (501)
T PF13001_consen 324 VFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAK 403 (501)
T ss_pred HhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHc
Confidence 44557777 778889999998 433 23444444444443 3342 2467899999999999999
Q ss_pred hCcccc-ccccHHHHHHHHhcCCChhHHHHHHHHHHhcccc
Q psy2915 181 INAQLV-EDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 181 ~~p~~~-~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~ 220 (883)
..|..+ .|-.++..+-..|.++++.++.+.-.+|..+...
T Consensus 404 ~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 404 RAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred cCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 999998 4666777777777899999999998888888653
No 243
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=60.14 E-value=1.1e+02 Score=32.66 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=58.1
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccc----ccccH----HHHHHHHhc--------CCChhHHH
Q psy2915 145 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV----EDQGF----LDQLKDLLS--------DSNPMVVA 208 (883)
Q Consensus 145 ~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~----~~~~~----~~~L~~lL~--------D~d~~V~~ 208 (883)
..+..+.++|.+..+++|.++.+|..++.++.++....|... .+.+. .+.+...|. ++...+..
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 345667789999999999999999999999999998665433 33443 345555555 77888899
Q ss_pred HHHHHHHhcccc
Q psy2915 209 NAVAAILLLPRK 220 (883)
Q Consensus 209 ~a~~~L~ei~~~ 220 (883)
.|..++..+.+.
T Consensus 193 ~ay~~L~~L~~~ 204 (282)
T PF10521_consen 193 AAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHHh
Confidence 999988888653
No 244
>KOG2137|consensus
Probab=60.11 E-value=1.4e+02 Score=35.74 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=111.2
Q ss_pred CChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHc
Q psy2915 593 EDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL 672 (883)
Q Consensus 593 ~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l 672 (883)
.++.=+..-..+|-++....|..+--.++.|.+...| .+..++-..+..+..|....+.. .+.+..-+.+..+.+.
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~-~~~~~~~p~l~pi~~~- 360 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQN-EFGPKMLPALKPIYSA- 360 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHh--ccccccccccchhhhhhhccchh-hhhhhhhHHHHHHhcc-
Confidence 3444455556666666666666554445556665555 33444445555555565443222 1222222233333331
Q ss_pred ccCChhhHHHH---HHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHH
Q psy2915 673 NECTEWGQVFI---LDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPL 749 (883)
Q Consensus 673 ~~~~~w~qi~i---L~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L 749 (883)
..+.-..+-| +++|..-.+. ++-...+++.|...+++....+.=+|++.+-.+.+.++. ..+-+.+.|.+
T Consensus 361 -~~~~~~~l~i~e~mdlL~~Kt~~-e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~-----~~vk~~ilP~l 433 (700)
T KOG2137|consen 361 -SDPKQALLFILENMDLLKEKTPP-EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV-----PFVKQAILPRL 433 (700)
T ss_pred -CCcccchhhHHhhHHHHHhhCCh-HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH-----HHHHHHHHHHh
Confidence 1111111112 2333333332 223347788888888887778888888888888766653 23333455544
Q ss_pred HHhc--cCCcchHHHHHHHHHHHHhhCc--hhHhhccceeEEccCCCHHHHHHHHHHHHHhc
Q psy2915 750 VTLL--SSEPEVQYVALRNINLIVQKRP--DILKHEMKVFFVKYNDPIYVKLEKLDIMIRLA 807 (883)
Q Consensus 750 ~~ll--~~~~niry~aL~~l~~l~~~~~--~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~ 807 (883)
..+- .++.-++-.+|-++..+++..- ..+..-..++.|-..+|+.|....+.+.-.++
T Consensus 434 ~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 434 KNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred hcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4442 2456688888888888886542 22333336666777778888887777766554
No 245
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.09 E-value=91 Score=30.94 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHHHhh-cccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-NAQLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-~~~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
++|.....+.....--|--|..++..+... .++.+. -++++..+.+.|+.+|+.|..+++.+|..+..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444444444432222334444555444444 332221 13455666677777777777777777777743
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.76 E-value=1.7e+02 Score=27.81 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhh
Q psy2915 600 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWG 679 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~ 679 (883)
...+.+..+.+..+... .+.+..+.+.|..+||.|+..|+.+|..+.++.. ..+.....
T Consensus 23 ~~ileicD~In~~~~~~--k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG----------~~fh~eva--------- 81 (142)
T cd03569 23 ASILEICDMIRSKDVQP--KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG----------THFHDEVA--------- 81 (142)
T ss_pred HHHHHHHHHHhCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC----------HHHHHHHh---------
Confidence 55555665555444322 3566788888888999999999998888886522 11111110
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHhHhhc-CCChHHHHHHHHHHHHhhhhCCCChh
Q psy2915 680 QVFILDSLSNYSPKDDREAQSICERITPRLA-HANAAVVLSAVKVLMKLMEMLPGEGD 736 (883)
Q Consensus 680 qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~-~~~~aV~~eai~~i~~~~~~~~~~~~ 736 (883)
..++++.+..++. +.++.|.--+..++-.|+..++++++
T Consensus 82 ------------------s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (142)
T cd03569 82 ------------------SREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQ 121 (142)
T ss_pred ------------------hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 1245555555554 45668888888888888776665544
No 247
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.32 E-value=1.2e+02 Score=28.37 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=40.5
Q ss_pred hHHHhhHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 595 PYVRKTAAVCVAKLYDI-NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 595 ~~VRk~A~~al~~l~~~-~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
++||.+.+.++..+... +|+..+ ++++.+.+++.. ++......+..|..+..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~-~~~~~~~~L~iL~~l~e 54 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS-SPQHLELVLRILRILPE 54 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc-chhHHHHHHHHHHHHHH
Confidence 68999999999999986 488884 688888888876 56666667776666654
No 248
>KOG4199|consensus
Probab=57.87 E-value=2.8e+02 Score=30.19 Aligned_cols=242 Identities=14% Similarity=0.192 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhHH
Q psy2915 560 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSD--SNPMVV 637 (883)
Q Consensus 560 ~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D--~d~~V~ 637 (883)
.--...|-++++.-...- +.++...+ +-..++..+-+++..++.++-...|+.+. ..-...+..+|.+ ++.+|.
T Consensus 89 ~ck~~~A~r~la~~~ga~--~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~d-a~g~~vvv~lL~~~~~~~dlt 164 (461)
T KOG4199|consen 89 ECKKSLAHRVLAGKNGAH--DALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFD-AEAMAVVLKLLALKVESEEVT 164 (461)
T ss_pred HHhhhHHHHHHhccCCCc--chhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhc-cccHHHHHHHHhcccchHHHH
Confidence 445567777776432211 11222222 45678888999999999999999998875 4455777788874 456677
Q ss_pred HHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhc-cCCC-ChHHHHHHHHHHhHhhcCCChH
Q psy2915 638 ANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSN-YSPK-DDREAQSICERITPRLAHANAA 715 (883)
Q Consensus 638 ~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~-~~~~-~~~~~~~il~~l~~~l~~~~~a 715 (883)
.+.+..+..-+-.. ...+.+ ++..++++++.. +... ..+....+...+.-++-+-.--
T Consensus 165 ~~~~~~v~~Ac~~h-----------E~nrQ~---------~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 165 LLTLQWLQKACIMH-----------EVNRQL---------FMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred HHHHHHHHHHHHHh-----------HHHHHH---------HHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 77666666655321 111111 123334443331 1111 1122333333333333332222
Q ss_pred HHHHH----HHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc--CCcchHHHHHHHHHHHHhhCchh---Hhh--ccc-
Q psy2915 716 VVLSA----VKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDI---LKH--EMK- 783 (883)
Q Consensus 716 V~~ea----i~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~--~~~niry~aL~~l~~l~~~~~~~---~~~--~~~- 783 (883)
|.|.+ +++|... .....|+..+. -+|++---....+..|+-++ ++ +.+ -++
T Consensus 225 V~fg~ah~hAr~ia~e----------------~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~t 287 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKE----------------GILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EICKSIAESGGLDT 287 (461)
T ss_pred eecchhhHHHHHHHHh----------------hhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHH
Confidence 22222 2222211 11222333332 24665444444555554432 22 111 133
Q ss_pred eeEEccC-C---CHHHHHHHHHHHHHhccccchhh--------------------hhHHHHHHHHHHHHHHhhCCCchHH
Q psy2915 784 VFFVKYN-D---PIYVKLEKLDIMIRLASQANIAQ--------------------VNYVVQEAIVVIKDIFRKYPNKYET 839 (883)
Q Consensus 784 ~~~~l~~-d---d~~Ir~~~l~lL~~l~~~~N~~~--------------------~~~~~~e~i~~i~~l~~~~p~~~~~ 839 (883)
.+.|+.+ + ....-+..+.+|-+++.++.++. .+.+++|.+..++.|+-+-|+....
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~ 367 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAK 367 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHH
Confidence 2334443 2 44466889999999999888875 3568888888999999999987655
Q ss_pred HHH
Q psy2915 840 IIS 842 (883)
Q Consensus 840 ~i~ 842 (883)
++.
T Consensus 368 ~ie 370 (461)
T KOG4199|consen 368 AIE 370 (461)
T ss_pred HHh
Confidence 554
No 249
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=57.55 E-value=32 Score=29.94 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=44.5
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcC--CChhHHHHHHHHHHHHHh
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSD--SNPMVVANAVAALSEMNE 649 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D--~d~~V~~~a~~~l~~i~~ 649 (883)
.+.+|.+|.-|+..+..+++.+.+... .+.....+.+.+.| ........|+..|.++++
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 366899999999999999998765542 13455555555554 456789999999999975
No 250
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=56.27 E-value=58 Score=30.87 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCC
Q psy2915 580 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS 632 (883)
Q Consensus 580 ~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~ 632 (883)
+.+...+..+|.++++.|.+.|+.|+... .+|... ..-+.|.++++|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~---pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLT---PYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHH---hHHHHHHHHcCcc
Confidence 34445566778888888888888888754 333332 2446666666654
No 251
>KOG1789|consensus
Probab=55.86 E-value=5.3e+02 Score=32.68 Aligned_cols=125 Identities=18% Similarity=0.291 Sum_probs=70.3
Q ss_pred HHHHHhhc--CChhHHHHHHHHHHHHHhhCchh--HHhc--ccceeeccCCCHHHHHHHHHHHHHhcChhhHHH------
Q psy2915 289 PPLVTLLS--SEPEVQYVALRNINLIVQKRPDI--LKHE--MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ------ 356 (883)
Q Consensus 289 ~~L~~lL~--~~~~vr~~aL~~l~~l~~~~~~~--~~~~--~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~------ 356 (883)
+.+..++. ..+.++..+|+.+..+....|=+ +... +..+.-+-+.-++-|..+|++||++++..-+..
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg 1853 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHG 1853 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 45555553 56678889998887776655421 1111 222223334566899999999999987433211
Q ss_pred -HHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHH
Q psy2915 357 -VLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNAD 414 (883)
Q Consensus 357 -Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~ 414 (883)
+..-+--++....++.|..+..-+|++... +-..+.+--+|+++|.+.+.+.+.+.|
T Consensus 1854 ~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad-kl~GPrV~ITL~kFLP~~f~d~~RD~P 1911 (2235)
T KOG1789|consen 1854 GLMYILSILCLTNSDQQRAQAAELLAKLQAD-KLTGPRVTITLIKFLPEIFADSLRDSP 1911 (2235)
T ss_pred chhhhhHHHhccCcHHHHHHHHHHHHHhhhc-cccCCceeeehHHhchHHHHHHHhcCH
Confidence 111111234566788899888888877631 111233333455555554444444333
No 252
>KOG2011|consensus
Probab=55.71 E-value=1.4e+02 Score=37.60 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=91.1
Q ss_pred HHHHHHHHhhc-----CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCc
Q psy2915 580 EYLCEPLRKCL-----KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSG 654 (883)
Q Consensus 580 ~~l~~~l~~~l-----~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~ 654 (883)
+..+..+.+.+ .|-.|.+|-..+..++--.+.+|+.+-...++..+.=.|.|.+.+||...+.+|..+..++...
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~ 360 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK 360 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccc
Confidence 33444444443 5889999999999999999999999988888888888999999999999999999998763322
Q ss_pred hhhHHhcHHHHHHHHHHc-ccCChhhHHH-HHHHHhcc--CCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Q psy2915 655 VALIEMNAQTINKLLTAL-NECTEWGQVF-ILDSLSNY--SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMK 726 (883)
Q Consensus 655 ~~~~~l~~~~~~~L~~~l-~~~~~w~qi~-iL~lL~~~--~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~ 726 (883)
.....+....=.+++... .+.+.=.+.. +..++... +--+. +-+..+..++.+.+.-|..+|...+..
T Consensus 361 ~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d----~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 361 DKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSD----KDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccCh----hHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 222222222333344333 2233333332 22222222 11222 225667777777887776666665554
No 253
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.51 E-value=46 Score=31.48 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccC---Cc
Q psy2915 69 VYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCI---RV 145 (883)
Q Consensus 69 ~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i---~~ 145 (883)
..+-++......++.+--++.. |+|-++++||.++.+||..|-.+ +.
T Consensus 25 ~~l~icD~i~~~~~~~kea~~~------------------------------l~krl~~~~~~vq~~aL~lld~lvkNcg 74 (140)
T PF00790_consen 25 LILEICDLINSSPDGAKEAARA------------------------------LRKRLKHGNPNVQLLALTLLDALVKNCG 74 (140)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHH------------------------------HHHHHTTSSHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHcCCccHHHHHHH------------------------------HHHHHhCCCHHHHHHHHHHHHHHHHcCC
Confidence 3345555555556666667777 99999999999999998877654 22
Q ss_pred hhhh-----HHHHHHHHhhcCCC--Chh--HHHHHHHHHHHH
Q psy2915 146 DKIT-----EYLCEPLRKCLKDE--DPY--VRKTAAVCVAKL 178 (883)
Q Consensus 146 ~~~~-----~~l~~~v~~~l~d~--~~~--VRk~A~~al~kl 178 (883)
+.+. ..+...+.+++.++ .+. ||+++...+..-
T Consensus 75 ~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 75 PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 2222 12334455544332 222 898887555543
No 254
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.12 E-value=63 Score=32.00 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=57.5
Q ss_pred hhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhc
Q psy2915 610 DINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSN 689 (883)
Q Consensus 610 ~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~ 689 (883)
+..|+.+.=..+.+.+-+-|.+.+.--+.-|...+.++... ...+..++.+|+.+..+-+.|...++-..+..|++|+.
T Consensus 28 ~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~ 106 (183)
T PF10274_consen 28 KVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQ 106 (183)
T ss_pred ecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555554445777777777777777777777788888765 23456777888888888888877888777777777777
Q ss_pred c
Q psy2915 690 Y 690 (883)
Q Consensus 690 ~ 690 (883)
+
T Consensus 107 L 107 (183)
T PF10274_consen 107 L 107 (183)
T ss_pred H
Confidence 7
No 255
>KOG2011|consensus
Probab=55.08 E-value=26 Score=43.68 Aligned_cols=105 Identities=26% Similarity=0.361 Sum_probs=73.2
Q ss_pred ccccccchhhhchhcCCCCHHHHHHHHHHhccCC--chh--hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccc
Q psy2915 111 LFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIR--VDK--ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 186 (883)
Q Consensus 111 ~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~--~~~--~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~ 186 (883)
..++|+|| +..--.|-.|.||+-.+..||--. .|+ +-......+-=.|.|.+.-||++.+.++.++|......-
T Consensus 284 i~~if~sV--FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~ 361 (1048)
T KOG2011|consen 284 INDIFDSV--FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKD 361 (1048)
T ss_pred HHHHhhhe--eeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccch
Confidence 45688888 888899999999999999998621 122 222233444445799999999999999999998743221
Q ss_pred cc----ccHHHHHHHHh-cCCChhHHHHHHHHHHhc
Q psy2915 187 ED----QGFLDQLKDLL-SDSNPMVVANAVAAILLL 217 (883)
Q Consensus 187 ~~----~~~~~~L~~lL-~D~d~~V~~~a~~~L~ei 217 (883)
.- ..|-+++.++. .|-+++|+..++..+...
T Consensus 362 ~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 362 KLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 11 22345555544 578888888887766555
No 256
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=54.63 E-value=36 Score=32.94 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHhcCCCh---hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc----cccccHHHHHHHhhc
Q psy2915 558 SNPLIRALAVRTMGCIRV---DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL----VEDQGFLDQLKDLLS 630 (883)
Q Consensus 558 ~n~~vr~~AL~~L~~i~~---~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~----~~~~~~~~~l~~lL~ 630 (883)
..+.+|..|+-.++++.+ .+..+.+...+...+.+....-...|+.++..++...|+. +..+.+.+.+..+..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 456678777777776532 3355556677777776554445557777887788766654 445678888888888
Q ss_pred --CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcc
Q psy2915 631 --DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALN 673 (883)
Q Consensus 631 --D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~ 673 (883)
.++..+..+++.++..-+.. +.+...+......+++.+-
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d----~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACID----KSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTS----HHHHHCCHHHCHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHHHH
Confidence 78999999999999988854 3455555555555555443
No 257
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=54.27 E-value=26 Score=34.28 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=47.7
Q ss_pred CCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 592 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 592 d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
|.--.+||+|..|++.+.....+.+.-..|.+.+..-|.| +++++.-+...+.+++...|
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 4456799999999999988766666556788888888899 99999999999999986543
No 258
>KOG1991|consensus
Probab=53.74 E-value=5.4e+02 Score=32.20 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=85.5
Q ss_pred CCCChHHHh-------------hHHHHHHHHHhhc-ccccccccHHHHHHHhhc--------CCChhHHHHHHHHHHHHH
Q psy2915 591 KDEDPYVRK-------------TAAVCVAKLYDIN-AQLVEDQGFLDQLKDLLS--------DSNPMVVANAVAALSEMN 648 (883)
Q Consensus 591 ~d~~~~VRk-------------~A~~al~~l~~~~-~~~~~~~~~~~~l~~lL~--------D~d~~V~~~a~~~l~~i~ 648 (883)
+||..|+|+ +|...+..+.++- ++.+ +++++-+.+.|. ..|+.-.-.|+.+++.++
T Consensus 369 ~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~ 446 (1010)
T KOG1991|consen 369 EDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA 446 (1010)
T ss_pred cCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence 578888987 4556666666654 6766 456666666664 235555566666666555
Q ss_pred hcCCCchhhHH-hcHHHHHHHHHHcccCChhhHHHHHHHHhccC---CCChHHHHHHHHHHhHhhc-CCChHHHHHHHHH
Q psy2915 649 EASTSGVALIE-MNAQTINKLLTALNECTEWGQVFILDSLSNYS---PKDDREAQSICERITPRLA-HANAAVVLSAVKV 723 (883)
Q Consensus 649 ~~~~~~~~~~~-l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~~~~~~~~~il~~l~~~l~-~~~~aV~~eai~~ 723 (883)
.---....+.. +=...+.++.-.+.++.-+++.+...++..|+ -+++....+.++...+++. ++.-.|..||+-+
T Consensus 447 ~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalA 526 (1010)
T KOG1991|consen 447 SILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALA 526 (1010)
T ss_pred HHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHH
Confidence 21111111111 11122334444444677788888888888887 3466667788888888888 4555999999988
Q ss_pred HHHhh
Q psy2915 724 LMKLM 728 (883)
Q Consensus 724 i~~~~ 728 (883)
+-.+.
T Consensus 527 Lq~fI 531 (1010)
T KOG1991|consen 527 LQSFI 531 (1010)
T ss_pred HHHHH
Confidence 87775
No 259
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=52.14 E-value=1.5e+02 Score=27.99 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 600 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
.+.+.+.-+.+..|... ...+..+...|..++|.|..-|+.+|..+.++
T Consensus 20 ~~ileicD~In~~~~~~--k~a~rai~krl~~~n~~v~l~AL~LLe~~vkN 68 (139)
T cd03567 20 EAIQAFCEQINKEPEGP--QLAVRLLAHKIQSPQEKEALQALTVLEACMKN 68 (139)
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 66667766666666533 34668888899999999999999999999875
No 260
>KOG0392|consensus
Probab=49.32 E-value=75 Score=40.24 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccc-ccc--cc
Q psy2915 546 MAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ-LVE--DQ 619 (883)
Q Consensus 546 l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~-~~~--~~ 619 (883)
-..+.+..-+.++.+.+|-+|.++++.+ ...+....++..+..++.|.+..+|+.++.++..+....-. .+. .+
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 3446666777889999999999998865 55666667777888888999999999888877655442111 110 12
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 620 GFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 620 ~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
=+++.+-.++.|.+..||.+|..++..+.+-
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 3567777888999999999999999988753
No 261
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=49.12 E-value=4.2e+02 Score=29.61 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHhHHHHHhhc--CChhHHHHHHHHHHHHHhhCchhHHhcc----c-ceeeccCCCHHHHHHHHHHHHHh
Q psy2915 283 LTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDILKHEM----K-VFFVKYNDPIYVKLEKLDIMIRL 348 (883)
Q Consensus 283 ~~~~~~~~L~~lL~--~~~~vr~~aL~~l~~l~~~~~~~~~~~~----~-~~~~l~~~~~~Ir~~aL~iL~~l 348 (883)
.+.+++..+..+-+ .+.++-+..|..+.+++..+|+.+..|. + ++..+-+....+|.+|+.++..+
T Consensus 130 ~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 130 RVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34444444444432 3457888999999999999999887763 2 33344555666777777766544
No 262
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.28 E-value=80 Score=29.95 Aligned_cols=27 Identities=7% Similarity=0.009 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHHHHHHhhCchhHHhc
Q psy2915 297 SEPEVQYVALRNINLIVQKRPDILKHE 323 (883)
Q Consensus 297 ~~~~vr~~aL~~l~~l~~~~~~~~~~~ 323 (883)
.++++...||..+..++++.+..|..+
T Consensus 51 ~n~~v~l~aL~LLe~~vkNCG~~fh~e 77 (141)
T cd03565 51 KNHKEVMLTLTVLETCVKNCGHRFHVL 77 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 467899999999999999998777654
No 263
>KOG1932|consensus
Probab=47.73 E-value=2.2e+02 Score=35.94 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=33.3
Q ss_pred hhcCCCC--HHHHHHHHHHhcCCCh-hhhhHHHHHHHHhhc-CCCChHHHhhHHHHHHH
Q psy2915 553 KDCEDSN--PLIRALAVRTMGCIRV-DKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAK 607 (883)
Q Consensus 553 kdl~~~n--~~vr~~AL~~L~~i~~-~~~~~~l~~~l~~~l-~d~~~~VRk~A~~al~~ 607 (883)
.+..... -.+|+.|+..+...+. ....+.+ +.+...+ .|++|++|.+-+.-+..
T Consensus 873 ~~~a~~~~~vd~r~~a~~~~v~~~~~~~~~~~l-~~~leil~~~~dp~~R~~i~~ml~~ 930 (1180)
T KOG1932|consen 873 ESYAEEGSFVDVRICAEELNVDLGGVDGSPDDL-AYILEILENDPDPVIRHKILDMLSQ 930 (1180)
T ss_pred hccccccchhhhHHHhhhhhhhhcccCCChHHH-HHHhhhcccCcchHHHHHHHHHhhc
Confidence 4444444 4679999998887655 2222222 2233333 69999999987776654
No 264
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=47.44 E-value=61 Score=31.01 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=51.0
Q ss_pred ceeEEccCC-CHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHhhcccCCcHHHHHHH-
Q psy2915 783 KVFFVKYND-PIYVKLEKLDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEARASM- 860 (883)
Q Consensus 783 ~~~~~l~~d-d~~Ir~~~l~lL~~l~~~~N~~~~~~~~~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~~i~~~~~~~~~- 860 (883)
.+++.+.+| .|||+++++.++..++...|-+...-+..++ +.+++.+..+...++|.++-..-+...+......+
T Consensus 80 ~iie~L~~D~rPSVKLA~iSLlSiIiek~~~kn~~~v~s~l---id~I~~kiSe~~~diI~FI~~~~k~n~~~~il~sv~ 156 (180)
T PHA02855 80 QIIESLNNDNRPSVKLAIISLISMIAEKKGYKNNNIVMSDL---INEIANKISENSKDLISFIERDKKKNVDNDILFSVI 156 (180)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHhhhcccchhHHHHH
Confidence 344556555 9999999999999988877765322222222 56667777777788888876655543334444433
Q ss_pred --HHHHh
Q psy2915 861 --IWIIG 865 (883)
Q Consensus 861 --~w~lg 865 (883)
.|++|
T Consensus 157 ~~f~i~~ 163 (180)
T PHA02855 157 NFFVIVG 163 (180)
T ss_pred HHHHHHH
Confidence 35555
No 265
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=47.30 E-value=26 Score=24.53 Aligned_cols=27 Identities=37% Similarity=0.289 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHH
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKL 608 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l 608 (883)
.++.+.+++.++++.+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345566667777888888888888765
No 266
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=45.58 E-value=3.4e+02 Score=27.52 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=50.3
Q ss_pred HHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 583 CEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 583 ~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.+.+.+...|++..+|+.|+.+..+..+. .+ . ..+...+..++.|++..|+.+.-=+|-++++.+|
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~-~~-~--~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK-TD-T--DLLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc-cC-H--HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 45677888999999999999987664443 11 1 2344566778889999999999999999998754
No 267
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.31 E-value=57 Score=30.07 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=23.6
Q ss_pred eccCCCHHHHHHHHHHHHHhcChhhH---------HHHHHHHHHhhh
Q psy2915 329 VKYNDPIYVKLEKLDIMIRLASQANI---------AQVLSELKEYAT 366 (883)
Q Consensus 329 ~l~~~~~~Ir~~aL~iL~~l~~~~nv---------~~Il~eL~~~~~ 366 (883)
.|.+.++.||.++|.+|-.+|..-+- ..+|.++.+|-.
T Consensus 46 RL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 46 RLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 45666677777777777777754321 135666666644
No 268
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=44.24 E-value=1.5e+02 Score=27.76 Aligned_cols=74 Identities=19% Similarity=0.242 Sum_probs=55.3
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc----cccccHHHHHHHhhcCCC--hhHHHHHHHHHHHHHh
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL----VEDQGFLDQLKDLLSDSN--PMVVANAVAALSEMNE 649 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~----~~~~~~~~~l~~lL~D~d--~~V~~~a~~~l~~i~~ 649 (883)
+.-....+..|++.+.+++|.|-..|+..+-.+.+..+.. +....|.+.|..++.+.. +.|+.-++.++..-..
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3445566678899999999999999998888887764332 334678899999988643 3488888888877764
No 269
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=43.77 E-value=3e+02 Score=26.64 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=42.3
Q ss_pred hhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhH
Q psy2915 409 RIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGF 475 (883)
Q Consensus 409 ~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~ 475 (883)
.+.+...-+..+.+.+..-+..+-..++.|+-=+...++ ..++.+.-+++.+... .+.+.|.-|+
T Consensus 89 ~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~-~lrd~lilvLRKamf~-r~~~~R~~Av 153 (158)
T PF14676_consen 89 TVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFSP-SLRDSLILVLRKAMFS-RELDARQMAV 153 (158)
T ss_dssp HHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHTT--SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHcc-ccHHHHHHHH
Confidence 333333444455556666677777788888877765554 6888888899988887 3788887775
No 270
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=43.19 E-value=4.8e+02 Score=28.58 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=33.4
Q ss_pred hcCChhHHHHHHHHHHHHHhhCchhHHhccccee-eccCCCHHHHHHHHHHHHHhcCh
Q psy2915 295 LSSEPEVQYVALRNINLIVQKRPDILKHEMKVFF-VKYNDPIYVKLEKLDIMIRLASQ 351 (883)
Q Consensus 295 L~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~-~l~~~~~~Ir~~aL~iL~~l~~~ 351 (883)
++++...+-.+......|.+ +|++.++ ++.+....+...+|.+|..++.-
T Consensus 36 ls~~~~~~~~g~~l~~~iL~-------~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f 86 (330)
T PF11707_consen 36 LSSDLSFQSYGLELIRSILQ-------NHLKLLYRSLSSSKPSLTNPALRLLTAIVSF 86 (330)
T ss_pred hccchhHHHHHHHHHHHHHH-------HHHHHHHHHhCcCcHHHHHHHHHHHHHHHcc
Confidence 35555566666666655555 3444444 66777778888999999999873
No 271
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.62 E-value=50 Score=30.07 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhccccC
Q psy2915 191 FLDQLKDLLSDSNPMVVANAVAAILLLPRKS 221 (883)
Q Consensus 191 ~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~ 221 (883)
.++.|.+-|.|+++.|+..|+..|.+.+..+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 3567788889999999999999999999765
No 272
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=41.81 E-value=5.2e+02 Score=28.50 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=72.0
Q ss_pred HhhcCCCChHHHhhHHHHHHHHHhhccccccc------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHh
Q psy2915 587 RKCLKDEDPYVRKTAAVCVAKLYDINAQLVED------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEM 660 (883)
Q Consensus 587 ~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l 660 (883)
.+.+..++-.|-.-|...+-.+...++..+.+ ..|+..+..||..+|.-.+..++.+|+++.-..++
T Consensus 170 f~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n------- 242 (335)
T PF08569_consen 170 FKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN------- 242 (335)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG-------
T ss_pred HHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH-------
Confidence 34456777888777777777766655544321 24778888999999999999999999999865321
Q ss_pred cHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCCh
Q psy2915 661 NAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEG 735 (883)
Q Consensus 661 ~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~ 735 (883)
+.-+.+.+ . + .+-+..+..++++.+..|.+||.+++=-+. .-|.+|
T Consensus 243 ----~~vm~~yi-------------------~-~----~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~ 288 (335)
T PF08569_consen 243 ----FNVMTRYI-------------------S-S----PENLKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKP 288 (335)
T ss_dssp ----HHHHHHHT-------------------T------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-B
T ss_pred ----HHHHHHHH-------------------C-C----HHHHHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCC
Confidence 11222211 1 1 245677778888888899999888765443 224443
No 273
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=41.08 E-value=5.9e+02 Score=28.94 Aligned_cols=76 Identities=11% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHhHhhcCCChHHHHHHHHHHHHh--hhhCCCChhhHHHHHHHhhhHHHHhccC--CcchHHHHHHHHHHHHhhCchh
Q psy2915 702 CERITPRLAHANAAVVLSAVKVLMKL--MEMLPGEGDFVSTLTKKLAPPLVTLLSS--EPEVQYVALRNINLIVQKRPDI 777 (883)
Q Consensus 702 l~~l~~~l~~~~~aV~~eai~~i~~~--~~~~~~~~~l~~~~~~~~~~~L~~ll~~--~~niry~aL~~l~~l~~~~~~~ 777 (883)
...+..++++.|.-|.-.|.....+= ...+.. ..+.++..+.+.|.....+ +..+|=.+...+..+...+|++
T Consensus 299 f~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~---~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 299 FKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ---NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKL 375 (409)
T ss_dssp HHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC---THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHH
Confidence 34445666777766655554432110 000001 1223333444433333332 4567777777777777777777
Q ss_pred Hhh
Q psy2915 778 LKH 780 (883)
Q Consensus 778 ~~~ 780 (883)
+.+
T Consensus 376 f~~ 378 (409)
T PF01603_consen 376 FDK 378 (409)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 274
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.96 E-value=2.1e+02 Score=34.78 Aligned_cols=148 Identities=17% Similarity=0.202 Sum_probs=88.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHH
Q psy2915 622 LDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSI 701 (883)
Q Consensus 622 ~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i 701 (883)
+..|..+|+.+|..|...+-.++.+......++ ..+..|+..--+.+ -..++++|.......+ ..+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~---s~~~~~il~~~~~P~~---K~~ 71 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTN---SQRALEILVGVQEPHD---KHL 71 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcC---cHHHHHHHHhcCCccH---HHH
Confidence 466677888889999888888888887542211 22333333211111 2345666665542221 366
Q ss_pred HHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc--CCcchHHHHHHHHHHHHhhCchhHh
Q psy2915 702 CERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDILK 779 (883)
Q Consensus 702 l~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~--~~~niry~aL~~l~~l~~~~~~~~~ 779 (883)
+..+...+.+ +.-+++++.+++++.. .+++.+..-+-..+.+-|+.+|. .+..+-..||..|..|+...|..+.
T Consensus 72 ~~~l~~~~~~--~~~Rl~~L~Ll~~~v~--~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 72 FDKLNDYFVK--PSYRLQALTLLGHFVR--SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHcC--chhHHHHHHHHHHHHh--cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 7777776664 4677788888887742 12223322222245555555555 4555777889999999998888888
Q ss_pred hccceeEE
Q psy2915 780 HEMKVFFV 787 (883)
Q Consensus 780 ~~~~~~~~ 787 (883)
+|+..+|.
T Consensus 148 ~~L~~Lf~ 155 (668)
T PF04388_consen 148 PHLPDLFN 155 (668)
T ss_pred HHHHHHHH
Confidence 88754443
No 275
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=40.95 E-value=69 Score=32.62 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=47.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc
Q psy2915 549 NTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE 617 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~ 617 (883)
..+.+=..|+|...|+.|+-+.-......-.+.+...+...+.|+..+|+|+..-+|..+.+.+|+.+.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~ 186 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVR 186 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHH
Confidence 344555667777777777664433322222345556677788999999999999999999888887763
No 276
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=40.90 E-value=35 Score=33.36 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCc
Q psy2915 162 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYW 223 (883)
Q Consensus 162 d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~ 223 (883)
|.--.+||.|..|+..+....++.+.-..+.+.+..-|.| ++.++.-+...+..++...|.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 4556799999999999999888887656678888888889 999998888888888766654
No 277
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=40.59 E-value=2.5e+02 Score=27.62 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=70.8
Q ss_pred HHHHHHHhcCC----ChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhccc
Q psy2915 15 IFELKGELNSD----KKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFST 90 (883)
Q Consensus 15 ~~~~~~~l~~~----~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~ 90 (883)
..++.+.+..+ =..+-++.+++-=+..... ....+-++..+.-+|...-+-.|-.+....+.+|+-++-.-..
T Consensus 4 ~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~---p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~ 80 (171)
T cd00872 4 REQLEAIIARDPLSELTEEDKELLWKLRHECRKK---PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDC 80 (171)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhC---cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCC
Confidence 33444444433 2445666777766655543 5667777777888888777777777777777677654422222
Q ss_pred ccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCC
Q psy2915 91 FFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKD 162 (883)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d 162 (883)
.. +++.||.-|++.|.+..+.++..++..- ++++..
T Consensus 81 ---------------------------------~f--~d~~VR~yAV~~L~~~sd~eL~~yL~QL-VQaLKy 116 (171)
T cd00872 81 ---------------------------------NF--PDEHVREFAVRCLEKLSDDELLQYLLQL-VQVLKY 116 (171)
T ss_pred ---------------------------------cC--CCHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHc
Confidence 23 3588999999999998888887766554 445543
No 278
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=40.57 E-value=3e+02 Score=31.60 Aligned_cols=170 Identities=15% Similarity=0.202 Sum_probs=84.5
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCC-CChHHHhhHHHHHHHHHhh----cccccc-
Q psy2915 550 TFVKDCEDSNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDI----NAQLVE- 617 (883)
Q Consensus 550 ~l~kdl~~~n~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l~d-~~~~VRk~A~~al~~l~~~----~~~~~~- 617 (883)
.+.++-+.+|+++...-.|.++...+ ..+.+.+...+....++ ++|.-=--..++++.+.+. +|+.+.
T Consensus 34 ~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~ 113 (435)
T PF03378_consen 34 LIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQ 113 (435)
T ss_dssp HHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---H
T ss_pred HHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHH
Confidence 33444446788888888888776533 33444445555555544 4565554445555555443 344211
Q ss_pred -cccHHHHHHHhhcCCChhHH---HHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHH----HHHHHhc
Q psy2915 618 -DQGFLDQLKDLLSDSNPMVV---ANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVF----ILDSLSN 689 (883)
Q Consensus 618 -~~~~~~~l~~lL~D~d~~V~---~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~----iL~lL~~ 689 (883)
++.+.|.+...|..+=.+.. ...+..+.+..+..+-++.|+.+.+ .+-.+.-|-+.- +.|+|..
T Consensus 114 ~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~--------~Ll~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFP--------PLLSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp HHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHH--------HHTSGGGGGSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH--------HHcCcchhccCCCcCcHHHHHHH
Confidence 24567778887764322222 3344455555442222334444443 343566664332 6666666
Q ss_pred cCCCChH------HHHHHHHHHhHhhcCC-ChHHHHHHHHHHHHh
Q psy2915 690 YSPKDDR------EAQSICERITPRLAHA-NAAVVLSAVKVLMKL 727 (883)
Q Consensus 690 ~~~~~~~------~~~~il~~l~~~l~~~-~~aV~~eai~~i~~~ 727 (883)
|-..++. ....++....+++.+. +..--|+-.++++..
T Consensus 186 ~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 186 YIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVEN 230 (435)
T ss_dssp HHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 5433222 2235666667777664 556666666666655
No 279
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=39.42 E-value=46 Score=23.18 Aligned_cols=29 Identities=38% Similarity=0.431 Sum_probs=24.9
Q ss_pred cHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 620 GFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 620 ~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
..++.|.+++..+++.++..|+.++..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35688888999889999999999998775
No 280
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.75 E-value=1.8e+02 Score=26.20 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=9.8
Q ss_pred CCChhHHHHHHHHHHH
Q psy2915 631 DSNPMVVANAVAALSE 646 (883)
Q Consensus 631 D~d~~V~~~a~~~l~~ 646 (883)
+.+..|+..+..++..
T Consensus 97 ~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 97 DVSTNVREKAIELVQL 112 (115)
T ss_pred CCChHHHHHHHHHHHH
Confidence 5566666666665544
No 281
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=38.58 E-value=3.1e+02 Score=24.94 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHhhcC-CCChHHHhhHHHHHHHHHhhcccccccccHHHH-HHHhhcCCChhH-HHHHHHHHHHHHhc
Q psy2915 577 KITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQ-LKDLLSDSNPMV-VANAVAALSEMNEA 650 (883)
Q Consensus 577 ~~~~~l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~-l~~lL~D~d~~V-~~~a~~~l~~i~~~ 650 (883)
++...++|.+.+++. .+.+..|-++.+-++.+..+.|=. ++.++. +..++.+..+.- ...++.++..+++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 456778899999998 888999999999999888765422 122333 334445444333 37788888888865
No 282
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=38.49 E-value=4.9e+02 Score=27.30 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=69.6
Q ss_pred hhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc--------CChhhHHHHHHHHhccCCCChHHHH
Q psy2915 628 LLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE--------CTEWGQVFILDSLSNYSPKDDREAQ 699 (883)
Q Consensus 628 lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~--------~~~w~qi~iL~lL~~~~~~~~~~~~ 699 (883)
.+.|++......|+.+|.+.... .++..+++.+.. ...|..--+-++|...+..+.
T Consensus 50 ~~~~~~~~~~~~a~~LLaq~re~------------~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~---- 113 (249)
T PF06685_consen 50 LLDDEEYNLHFYALYLLAQFREE------------RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDI---- 113 (249)
T ss_pred hccCcchHHHHHHHHHHHHHhhh------------hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCH----
Confidence 34445555556778888888643 333344444432 245555555566666555443
Q ss_pred HHHHHHhHhhcCCCh--HHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCch
Q psy2915 700 SICERITPRLAHANA--AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPD 776 (883)
Q Consensus 700 ~il~~l~~~l~~~~~--aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~ 776 (883)
+.+..++.+.+. -|+..|++++..+.. ..+..++++++.....+-..+.+++.. +-=..+..++..+|.
T Consensus 114 ---~~L~~li~~~~~~~yvR~aa~~aL~~l~~---~~~~~Re~vi~~f~~ll~~~l~~~~~~--~~~~Lv~~~~dL~~~ 184 (249)
T PF06685_consen 114 ---EPLKELIEDPDADEYVRMAAISALAFLVH---EGPISREEVIQYFRELLNYFLERNPSF--LWGSLVADICDLYPE 184 (249)
T ss_pred ---HHHHHHHhCCcHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhccCchH--HHHHHHHHHHhcCHH
Confidence 444555555444 888899999888853 222336777776666555556655554 222223444444543
No 283
>KOG0891|consensus
Probab=38.18 E-value=1.4e+03 Score=32.40 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCChh--hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc--------ccHHHHHHH-hhcC
Q psy2915 563 RALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--------QGFLDQLKD-LLSD 631 (883)
Q Consensus 563 r~~AL~~L~~i~~~--~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--------~~~~~~l~~-lL~D 631 (883)
-..|.++++.+.-. .+...+-..+...+...++.+|+.|+.++..+++..+..-.. ......+.. .+.|
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccC
Confidence 66789999987553 233333444566677889999999999999888765541000 011111111 1247
Q ss_pred CChhHHHHHHHHHH
Q psy2915 632 SNPMVVANAVAALS 645 (883)
Q Consensus 632 ~d~~V~~~a~~~l~ 645 (883)
.+|.++......+.
T Consensus 541 ~~~~i~~~v~~~l~ 554 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLN 554 (2341)
T ss_pred CCcchhhhHHhhhc
Confidence 77777777766665
No 284
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.93 E-value=5.4e+02 Score=27.65 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=69.7
Q ss_pred CCchhhHhHHHHHHhhcC-------CCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh
Q psy2915 539 SHPDMAIMAVNTFVKDCE-------DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI 611 (883)
Q Consensus 539 ~~~~~~~l~~n~l~kdl~-------~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~ 611 (883)
..++....+...+.+-+. .-+|..|..+++....-++.+..+.+... ...++++..|..++.|++.. .
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~---~~~~~~~~~k~~~l~aLa~~--~ 215 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWEL---YKNSTSPEEKRRLLSALACS--P 215 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHH---HHTTSTHHHHHHHHHHHTT---S
T ss_pred cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHH---HhccCCHHHHHHHHHhhhcc--C
Confidence 445555555566665554 23688999999999998887766654333 33677899999999999744 3
Q ss_pred cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC-CchhhHHhcHHHHHHHHHHcccC
Q psy2915 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST-SGVALIEMNAQTINKLLTALNEC 675 (883)
Q Consensus 612 ~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~-~~~~~~~l~~~~~~~L~~~l~~~ 675 (883)
+|+.+. ..+..+++++...... ...++..+...+| .....|.++...+..+.+.....
T Consensus 216 d~~~~~-----~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~ 274 (324)
T PF11838_consen 216 DPELLK-----RLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTN 274 (324)
T ss_dssp -HHHHH-----HHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TT
T ss_pred CHHHHH-----HHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 444331 3344444432111111 2233444552333 34566777777777777765433
No 285
>KOG2149|consensus
Probab=37.81 E-value=1.6e+02 Score=32.76 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=51.8
Q ss_pred HHHhhcCCCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 585 PLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 585 ~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
.+..-+.|.+..||+.|...+-.....+|+.... ...++.+..+..|.+..||.+...++..+..
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~ 128 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLIL 128 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHh
Confidence 3455578999999999999999999888877641 2355666677789999999999998888653
No 286
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.48 E-value=92 Score=35.80 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHhccC--CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCC
Q psy2915 126 EDSNPLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSN 203 (883)
Q Consensus 126 ~~~n~~vr~lALr~L~~i--~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d 203 (883)
+..+..+...|+-..+-| +..--.+.+.+.+-..+.-.++.+|+.--+|.+-++..+|+.- .++.|.+..+|.|
T Consensus 614 k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~----vfDtL~r~shd~d 689 (881)
T COG5110 614 KNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMN----VFDTLERSSHDGD 689 (881)
T ss_pred hhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchH----HHHHHHHhccccc
Confidence 334556676666555444 2222334455555555556799999999999999988888874 6789999999999
Q ss_pred hhHHHHHHHHHHhccc
Q psy2915 204 PMVVANAVAAILLLPR 219 (883)
Q Consensus 204 ~~V~~~a~~~L~ei~~ 219 (883)
..|..+++.+++-+..
T Consensus 690 l~v~~ntIfamGLiGA 705 (881)
T COG5110 690 LNVIINTIFAMGLIGA 705 (881)
T ss_pred hhHHHHHHHHhhcccc
Confidence 9999999999988864
No 287
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=37.20 E-value=89 Score=27.17 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHHHHHHhhhCccccc--cccHHHHHHHHhcC--CChhHHHHHHHHHHhccc
Q psy2915 161 KDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSD--SNPMVVANAVAAILLLPR 219 (883)
Q Consensus 161 ~d~~~~VRk~A~~al~kl~~~~p~~~~--~~~~~~~L~~lL~D--~d~~V~~~a~~~L~ei~~ 219 (883)
.++++.+|..|+..+..+.+.+.+... .+.....+.+.+.| +...+...|+..|.++..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 356889999999999999987655442 12344555554444 567789999999999854
No 288
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=37.18 E-value=5.8e+02 Score=27.72 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHHHHHHhHhhcCCChH-HHHHHHHHHHHhhhhCCCChhhHHHHHH--HhhhHHHHhcc-CCcchHHHHHHHHHHHHh
Q psy2915 699 QSICERITPRLAHANAA-VVLSAVKVLMKLMEMLPGEGDFVSTLTK--KLAPPLVTLLS-SEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 699 ~~il~~l~~~l~~~~~a-V~~eai~~i~~~~~~~~~~~~l~~~~~~--~~~~~L~~ll~-~~~niry~aL~~l~~l~~ 772 (883)
.+++..+...++.+++. .+--|++=|.++....|.. ..++. ..-..++.|++ +++++||=||+++..+..
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~----~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI----NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH----HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 36778888888887774 3333444455444333433 22222 22234556777 588999999999877654
No 289
>KOG2038|consensus
Probab=36.50 E-value=8.8e+02 Score=29.64 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=85.7
Q ss_pred ccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhcCCCChHH
Q psy2915 520 TDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI--RVDKITEYLCEPLRKCLKDEDPYV 597 (883)
Q Consensus 520 s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i--~~~~~~~~l~~~l~~~l~d~~~~V 597 (883)
+.+...|++..+|+..+.+. +..-.+..|.....++=+.++.-||+++..+ +-||--..++..+...+.|+...+
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~---ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKI---LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHH---HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 34444455555555554432 1122344444555667788999999988876 457766778888888999999999
Q ss_pred HhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChh--HHHHHHHHHHHHH
Q psy2915 598 RKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPM--VVANAVAALSEMN 648 (883)
Q Consensus 598 Rk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~--V~~~a~~~l~~i~ 648 (883)
-.+|..-|..+...+|..- .-.+..+.+++--++.+ ...-|+..|..+.
T Consensus 358 askAsylL~~L~~~HPnMK--~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMK--IVVIDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hhhHHHHHHHHHhhCCcce--eehHHHHHHHHcccCccccceeehhhhhhhhH
Confidence 9999999999999999874 24678888888655544 3455666666664
No 290
>KOG1048|consensus
Probab=36.48 E-value=8.7e+02 Score=29.58 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=65.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCCh-----hhhhHHHHHHHHhhcCCCCh------HHHhhHHHHHHHHHhhcccccc
Q psy2915 549 NTFVKDCEDSNPLIRALAVRTMGCIRV-----DKITEYLCEPLRKCLKDEDP------YVRKTAAVCVAKLYDINAQLVE 617 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~~L~~i~~-----~~~~~~l~~~l~~~l~d~~~------~VRk~A~~al~~l~~~~~~~~~ 617 (883)
+.+.+.+..+++.|.+.|..+|.++.. +.+....++.+.++|.+..+ .+-..++..+..+.+..+....
T Consensus 569 ~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAk 648 (717)
T KOG1048|consen 569 PPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAK 648 (717)
T ss_pred cHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHH
Confidence 556677788888888888888887622 55666788889999976554 5556666666666654433322
Q ss_pred ---cccHHHHHHHhhc-CCChhHHHHHHHHHHHHHh
Q psy2915 618 ---DQGFLDQLKDLLS-DSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 618 ---~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~ 649 (883)
+.+-++.|..+.. -.++.+..+|..++..+..
T Consensus 649 dl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 649 DLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 1223355554444 3466788888888887764
No 291
>PF14961 BROMI: Broad-minded protein
Probab=36.34 E-value=2.6e+02 Score=35.73 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=52.2
Q ss_pred HHHHhhcCCCCH-HHHHHHHHHhcCC-----ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc
Q psy2915 549 NTFVKDCEDSNP-LIRALAVRTMGCI-----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 549 n~l~kdl~~~n~-~vr~~AL~~L~~i-----~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
+.+..-+.-++| .||..|++.|++. .+.|..+.+-..+..+|.|+++.+..+++.-..+++...|-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 334444444444 7999999999976 4456777888899999999999999999998888887665443
No 292
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.68 E-value=3e+02 Score=25.99 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=44.8
Q ss_pred CchhhHhHHHHHHhhcCC-CCHHHHHHHHHHhcCC---Ch----hhhh-HHHHHH-HHhhcCC---CChHHHhhHHHHHH
Q psy2915 540 HPDMAIMAVNTFVKDCED-SNPLIRALAVRTMGCI---RV----DKIT-EYLCEP-LRKCLKD---EDPYVRKTAAVCVA 606 (883)
Q Consensus 540 ~~~~~~l~~n~l~kdl~~-~n~~vr~~AL~~L~~i---~~----~~~~-~~l~~~-l~~~l~d---~~~~VRk~A~~al~ 606 (883)
.++-..-++..|+|-+++ +||.+...||..|-.+ .+ .+++ ..++.. +.+.+.+ .+..||++.+..+.
T Consensus 32 ~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 32 TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 334445688889999984 6898888888876533 11 1222 234444 5566652 34578888777776
Q ss_pred HHHhhc
Q psy2915 607 KLYDIN 612 (883)
Q Consensus 607 ~l~~~~ 612 (883)
.-...+
T Consensus 112 ~W~~~f 117 (141)
T cd03565 112 AWADAF 117 (141)
T ss_pred HHHHHh
Confidence 554443
No 293
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=35.46 E-value=69 Score=26.57 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhC--ccccccccHHHHHHHHh-cCCChhHHHHHHHHHHhccccC
Q psy2915 168 RKTAAVCVAKLYDIN--AQLVEDQGFLDQLKDLL-SDSNPMVVANAVAAILLLPRKS 221 (883)
Q Consensus 168 Rk~A~~al~kl~~~~--p~~~~~~~~~~~L~~lL-~D~d~~V~~~a~~~L~ei~~~~ 221 (883)
.|.|..|++++.... -+.+++.+.++.+.++. +.+..++|+.|+.+|.-+....
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 477888888886522 23344455777777744 4788899999999998887654
No 294
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=34.43 E-value=3.2e+02 Score=26.67 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=67.9
Q ss_pred CcHHHHHHHhcCC----ChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhc
Q psy2915 13 GEIFELKGELNSD----KKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAF 88 (883)
Q Consensus 13 ~~~~~~~~~l~~~----~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~ 88 (883)
.|..++.+.+..+ =...-++.+++-=+..... ..+.+-+++.+.=++....+=.|-.+....+..++-++-.-
T Consensus 9 ~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~---p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL 85 (166)
T cd00870 9 KERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNN---KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELL 85 (166)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhC---cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHc
Confidence 4555666666544 1445566677644443322 45566666656667777666677777777666665544222
Q ss_pred ccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCC
Q psy2915 89 STFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 163 (883)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~ 163 (883)
+. .. +++.||.-|++.|....+.++..++.. +++++..+
T Consensus 86 ~~---------------------------------~f--~~~~VR~yAV~~L~~~sd~eL~~yL~Q-LVQaLKyE 124 (166)
T cd00870 86 SP---------------------------------YF--TNPVVRKYAVSRLKLASDEELLLYLLQ-LVQALKYE 124 (166)
T ss_pred Cc---------------------------------cC--CCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhc
Confidence 22 12 368899999999999887777766654 44555443
No 295
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=34.26 E-value=77 Score=29.66 Aligned_cols=53 Identities=25% Similarity=0.462 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHhhhC-ccccccccHHHHHHHHhcCCChhHHHHHHHHHHhcccc
Q psy2915 165 PYVRKTAAVCVAKLYDIN-AQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 165 ~~VRk~A~~al~kl~~~~-p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~ 220 (883)
++||++.+.++..+...+ |+.++ ++++.+.++++. ++.....++..|..+.++
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eE 55 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS-SPQHLELVLRILRILPEE 55 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Confidence 689999999999998755 99985 488888888876 466666666666665543
No 296
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.21 E-value=3.2e+02 Score=24.55 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q psy2915 586 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS 651 (883)
Q Consensus 586 l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~ 651 (883)
|.++-++..+..-......+..+.+..++.. ...+..+...|.++++.|+.-|+.++..+.++.
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~--~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~ 68 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINETNVGP--KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC 68 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCCCccH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 3344444444444455666666655554443 346688888888889999999999999888763
No 297
>KOG1993|consensus
Probab=33.52 E-value=9.9e+02 Score=29.38 Aligned_cols=129 Identities=18% Similarity=0.294 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhcChhhHHH-----HHHHH-------HHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q psy2915 333 DPIYVKLEKLDIMIRLASQANIAQ-----VLSEL-------KEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLD 400 (883)
Q Consensus 333 ~~~~Ir~~aL~iL~~l~~~~nv~~-----Il~eL-------~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~ 400 (883)
+|.-||..+.+.+..++++-|... +++.+ .+-+++.| .|..+...++.+.++-.+..+-+...++.
T Consensus 539 ~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~D--tk~~VL~~ls~lI~r~~e~I~P~~~~ivq 616 (978)
T KOG1993|consen 539 NDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECD--TKTSVLNLLSTLIERVSEHIAPYASTIVQ 616 (978)
T ss_pred ccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 477789999999999988755422 22211 12222222 23344444444433322222222222222
Q ss_pred HHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhc---CCchHHHHHHHHHHHhhcCCCChh---hhhhh
Q psy2915 401 LIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLK---RPTDTQELVQQVLSLATQDSDNPD---LRDRG 474 (883)
Q Consensus 401 lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~---~~~~~~~~l~~ll~~~~~d~~~~e---vrdrA 474 (883)
++.. +-+. ..+.+-.|+++|+++-.+... .+....+.+-.+++.+.+.+ .|+ .-+-+
T Consensus 617 ~lp~---------------LWe~-s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~-sP~hv~L~EDg 679 (978)
T KOG1993|consen 617 YLPL---------------LWEE-SEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPS-SPEHVYLLEDG 679 (978)
T ss_pred HHHH---------------HHhh-hccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCC-CCceeehhhhH
Confidence 2221 1111 234456677777766554432 23357888899999988764 454 23444
Q ss_pred HHHHHh
Q psy2915 475 FIYWRL 480 (883)
Q Consensus 475 ~~y~~l 480 (883)
.+.|..
T Consensus 680 meLW~~ 685 (978)
T KOG1993|consen 680 MELWLT 685 (978)
T ss_pred HHHHHH
Confidence 555553
No 298
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=32.66 E-value=6.2e+02 Score=26.72 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHhhcCCCChHHHhhHHHHHHHHH
Q psy2915 585 PLRKCLKDEDPYVRKTAAVCVAKLY 609 (883)
Q Consensus 585 ~l~~~l~d~~~~VRk~A~~al~~l~ 609 (883)
.|..+.++++|++=|-.+.|-.|+.
T Consensus 193 mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 193 MVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred HHHHHccCCChhHHHHHHHHHHHHc
Confidence 4444556777777777777766664
No 299
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=32.30 E-value=79 Score=32.15 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHhc-CCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc
Q psy2915 550 TFVKDCEDSNPLIRALAVRTMG-CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 550 ~l~kdl~~~n~~vr~~AL~~L~-~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
.+.-|.++.|+-.|..|+-..- -.........+.+.+...+.|+.++|||+---||..++++.++..
T Consensus 122 ~~~a~~~~~~~w~rraaiv~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~ 189 (222)
T COG4912 122 EWAADAEEDNRWERRAAIVHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNELW 189 (222)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHHH
Confidence 3455667777777666665444 333333333477788888999999999999999988888655543
No 300
>KOG1566|consensus
Probab=32.01 E-value=6.9e+02 Score=27.10 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHhhcCCCChHHHhhHHHHHHHHHhhccccccc------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHH
Q psy2915 586 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIE 659 (883)
Q Consensus 586 l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 659 (883)
-.+++.+++-..|+-+...++.++.-.|..... +.-...+-.+|.|+....+..|....--...+...+++.
T Consensus 217 ~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V-- 294 (342)
T KOG1566|consen 217 YEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV-- 294 (342)
T ss_pred HHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH--
Confidence 445566666666777777776665533332211 223356778899999999999999877776653344322
Q ss_pred hcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCC
Q psy2915 660 MNAQTINKLLTALNECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 660 l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~ 694 (883)
..-|.+ .+-++++++..|.+..
T Consensus 295 -----~~IL~~--------Nr~KLl~~l~~f~~d~ 316 (342)
T KOG1566|consen 295 -----RDILVR--------NRPKLLELLHDFHTDR 316 (342)
T ss_pred -----HHHHHh--------CcHHHHHHHHHhCCCC
Confidence 222222 2567888888887754
No 301
>KOG2153|consensus
Probab=30.41 E-value=9.2e+02 Score=28.80 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCCh--HHHHHHHHHHhHhhcCCChHH
Q psy2915 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDD--REAQSICERITPRLAHANAAV 716 (883)
Q Consensus 639 ~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~--~~~~~il~~l~~~l~~~~~aV 716 (883)
.|+.+.+++....| .+.+....+.-++..+.++..-....++..+..+..+|. .-+..++..+..++...|.-|
T Consensus 304 vav~c~~~Ll~a~p----HFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v 379 (704)
T KOG2153|consen 304 VAVQCACELLEAVP----HFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEV 379 (704)
T ss_pred HHHHHHHHHHHhhh----hccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccc
Confidence 34444555543322 233334444444444555555555666676766654443 334566777777788788888
Q ss_pred HHHHHHHHHHh
Q psy2915 717 VLSAVKVLMKL 727 (883)
Q Consensus 717 ~~eai~~i~~~ 727 (883)
.-+++.+++.+
T Consensus 380 ~~~~~~~~lsL 390 (704)
T KOG2153|consen 380 LPDMITTFLSL 390 (704)
T ss_pred hhhHHHHHHhc
Confidence 88888888776
No 302
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=30.19 E-value=1.3e+02 Score=30.06 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=43.5
Q ss_pred HHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC
Q psy2915 512 PDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 591 (883)
Q Consensus 512 ~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~ 591 (883)
+.++..+.-.+....+-+|-.+..+...+++.+ ...+.+... ++.||.-|++.|.++.+.++.. .+|.+.++|.
T Consensus 48 ~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A---L~LL~~~f~--~~~VR~yAv~~L~~~~d~~l~~-yLpQLVQaLr 121 (184)
T PF00613_consen 48 PKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA---LELLSPNFP--DPFVRQYAVRRLESLSDEELLF-YLPQLVQALR 121 (184)
T ss_dssp HHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH---HHCTSTT-----HHHHHHHHHHHCTS-HHHHHH-HHHHHHHHGG
T ss_pred HHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH---HHHHHhhcc--HHHHHHHHHHHHHHcCchHHHH-HHHHHHHHhe
Confidence 333333334455555667777777777666553 233333333 3889999999998877666554 4555566665
Q ss_pred C
Q psy2915 592 D 592 (883)
Q Consensus 592 d 592 (883)
.
T Consensus 122 ~ 122 (184)
T PF00613_consen 122 Y 122 (184)
T ss_dssp G
T ss_pred e
Confidence 3
No 303
>KOG1988|consensus
Probab=29.94 E-value=1.1e+03 Score=29.24 Aligned_cols=101 Identities=11% Similarity=0.060 Sum_probs=49.5
Q ss_pred HHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHH-HHh---hcCCCCHHHHHHHHHHhcCCChhh----hhHHHHHHH
Q psy2915 515 VNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNT-FVK---DCEDSNPLIRALAVRTMGCIRVDK----ITEYLCEPL 586 (883)
Q Consensus 515 i~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~-l~k---dl~~~n~~vr~~AL~~L~~i~~~~----~~~~l~~~l 586 (883)
=+.+.+......--.......+....|.- . .+|+ +.| .+.++|-..|-..++....-+.+- ....++..+
T Consensus 30 dkGlr~~~t~eqpeavvr~~RLFek~Pfp-i-fiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri 107 (970)
T KOG1988|consen 30 DKGLRSGKTSEQPEAVVRFPRLFEKYPFP-I-FINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRI 107 (970)
T ss_pred hhcccccccccchHHHHHHHHHHhhCCch-h-hhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhhee
Confidence 34455555555544555555555555544 2 2232 222 334566667777777666432211 111122222
Q ss_pred HhhcCCCChHHHhhHHHHHHHHHhhcccccc
Q psy2915 587 RKCLKDEDPYVRKTAAVCVAKLYDINAQLVE 617 (883)
Q Consensus 587 ~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~ 617 (883)
.......+|+-|--+...++.+...-|+.-.
T Consensus 108 ~~V~hsnDp~aRAllL~ilg~~s~lipEfn~ 138 (970)
T KOG1988|consen 108 FYVDHSNDPVARALLLRILGQLSALIPEFNQ 138 (970)
T ss_pred EEeecCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 2223355666666666666666666666543
No 304
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=29.92 E-value=2.3e+02 Score=25.76 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=45.0
Q ss_pred hHhHHHHHHhhcC-CCCHHHHHHHHHHhcCCCh-----hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhc
Q psy2915 544 AIMAVNTFVKDCE-DSNPLIRALAVRTMGCIRV-----DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN 612 (883)
Q Consensus 544 ~~l~~n~l~kdl~-~~n~~vr~~AL~~L~~i~~-----~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~ 612 (883)
...+.+.+.+-++ +..+..|..|.--++.+.. ++..+.++..+.+....... .+.++.|+..+++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3456677888888 6778888888887776532 44555555555444444333 578999999998755
No 305
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=29.61 E-value=4e+02 Score=26.50 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=69.3
Q ss_pred cHHHHHHHhcCC----ChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcc
Q psy2915 14 EIFELKGELNSD----KKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFS 89 (883)
Q Consensus 14 ~~~~~~~~l~~~----~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n 89 (883)
+...+++.++.+ =...-++.+++-=+.. .+. ...++.+...+.-.+....+-+|-.+..+...+|+.++-.
T Consensus 9 ~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l-~~~--p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~L-- 83 (184)
T PF00613_consen 9 ERDQLEAIINKDPLQELTEEEKELLWKYRYYL-MNN--PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALEL-- 83 (184)
T ss_dssp HHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHH-TTS--GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHC--
T ss_pred HHHHHHHHHhcCCCccCCHHHHHHHHHCCHHh-hhC--chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHH--
Confidence 455566655543 1334466677654433 332 4677888888888888878888888888877777664422
Q ss_pred cccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCC
Q psy2915 90 TFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 163 (883)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~ 163 (883)
+.....| +.||.-|++.|.+....++..++ +.+++++..+
T Consensus 84 -------------------------------L~~~f~~--~~VR~yAv~~L~~~~d~~l~~yL-pQLVQaLr~e 123 (184)
T PF00613_consen 84 -------------------------------LSPNFPD--PFVRQYAVRRLESLSDEELLFYL-PQLVQALRYE 123 (184)
T ss_dssp -------------------------------TSTT-----HHHHHHHHHHHCTS-HHHHHHHH-HHHHHHGGGS
T ss_pred -------------------------------HHhhccH--HHHHHHHHHHHHHcCchHHHHHH-HHHHHHheec
Confidence 3334444 89999999999997766666554 4455555433
No 306
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=29.43 E-value=1.1e+02 Score=27.26 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHh
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDL 628 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~l 628 (883)
..+.++..+..++.|-+|.||.-|..-+.-+.+.+|+.+....|.+.+...
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f 58 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNF 58 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHH
Confidence 456677888999999999999999999999999999883334565555543
No 307
>PF05536 Neurochondrin: Neurochondrin
Probab=29.27 E-value=1e+03 Score=28.20 Aligned_cols=97 Identities=10% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHhhc-CChhHHHHHHHHHHHHHhhCchh------HHhccc-cee--eccC-------CCHHHHHHHHHHHHHhcChhhH
Q psy2915 292 VTLLS-SEPEVQYVALRNINLIVQKRPDI------LKHEMK-VFF--VKYN-------DPIYVKLEKLDIMIRLASQANI 354 (883)
Q Consensus 292 ~~lL~-~~~~vr~~aL~~l~~l~~~~~~~------~~~~~~-~~~--~l~~-------~~~~Ir~~aL~iL~~l~~~~nv 354 (883)
.++|+ .+++-|++||--+.+++...+.. +-..+. .|. .|.. ++..-+..|+.+|..+|.+.+.
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~ 90 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPEL 90 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhh
Confidence 34453 34677888888777777755421 111110 010 1111 5567899999999999987666
Q ss_pred ------HHHHHHHHHhhhhcCH-HHHHHHHHHHHHHHhhchh
Q psy2915 355 ------AQVLSELKEYATEVDV-DFVRKAVRAIGRCAIKVEQ 389 (883)
Q Consensus 355 ------~~Il~eL~~~~~~~d~-~~r~~ai~aI~~la~k~~~ 389 (883)
..-|+-|.+.+...+. ++..++.+.+..++ ..|.
T Consensus 91 a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~ 131 (543)
T PF05536_consen 91 ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPE 131 (543)
T ss_pred hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcH
Confidence 2345555566655555 88899999998888 3443
No 308
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=28.54 E-value=2.7e+02 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCc
Q psy2915 426 DENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 426 ~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~ 485 (883)
..+..-|...+.++..+....++......+++......--..+++|+.|...|..+-...
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 456777888888887776555555666666665544333345799999999888775443
No 309
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.78 E-value=1.1e+02 Score=27.73 Aligned_cols=29 Identities=38% Similarity=0.452 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 622 LDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 622 ~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
++.|.+-|.|.++.|+.+|+.+|.+.+..
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 46667777899999999999999999865
No 310
>PRK12495 hypothetical protein; Provisional
Probab=26.88 E-value=57 Score=32.95 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=33.8
Q ss_pred CCCCccccccCcCcHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccch
Q psy2915 1 MTDSKYFTTTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALF 51 (883)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~ 51 (883)
||| |+.. .|-..||+++.. +++|++..+|+--++.+|.-++..+
T Consensus 1 MSD---FDkE--aEREkLREKye~--d~~~R~~~~~ma~lL~~gatmsa~h 44 (226)
T PRK12495 1 MSD---FDKE--AEREKLREKYEQ--DEQKREATERMSELLLQGATMTNAH 44 (226)
T ss_pred CCc---hhHH--HHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhcccchhh
Confidence 888 8744 566678887764 4578899999999999998766655
No 311
>KOG2021|consensus
Probab=26.40 E-value=1.3e+03 Score=28.36 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh-cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCc
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSG 654 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~ 654 (883)
|.+++.....++.-=+..+|.+--....|+++.... +=..+.+..+++.+.+.+. -..+|.+|+..+.++..+.-+|
T Consensus 188 p~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP 265 (980)
T KOG2021|consen 188 PKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKP 265 (980)
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCCh
Confidence 444444443333222344788888888888877663 3334444568888888887 4578999999999998765555
Q ss_pred hh
Q psy2915 655 VA 656 (883)
Q Consensus 655 ~~ 656 (883)
.+
T Consensus 266 ~d 267 (980)
T KOG2021|consen 266 MD 267 (980)
T ss_pred hH
Confidence 43
No 312
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.76 E-value=9.3e+02 Score=26.58 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=71.6
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCC-------ChhHHHHHHHHHHHHHhcCCCchh
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS-------NPMVVANAVAALSEMNEASTSGVA 656 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~-------d~~V~~~a~~~l~~i~~~~~~~~~ 656 (883)
..|.+.+.+.+..-|++|...+. .+|..- .++|.+...+.+. |..+....+.++..+..+ |.- .
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~----tD~gl~---~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l-~ 251 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLR----TDPGLQ---QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNL-H 251 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhc----cCCCch---hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCC-c
Confidence 34455555666767777666652 444442 3556655555432 566666666666666654 211 1
Q ss_pred hHHhcHHHHHHHHHHcc---------cCChhhHHH-----HHHHHhccCCCChHHHHHHHHHHhHhhcCC--ChHHHHHH
Q psy2915 657 LIEMNAQTINKLLTALN---------ECTEWGQVF-----ILDSLSNYSPKDDREAQSICERITPRLAHA--NAAVVLSA 720 (883)
Q Consensus 657 ~~~l~~~~~~~L~~~l~---------~~~~w~qi~-----iL~lL~~~~~~~~~~~~~il~~l~~~l~~~--~~aV~~ea 720 (883)
....+|..+..+++++. ..+.|.-.. +-.+..+|+...+.....+.+.+.+.+.+. ..+..|.|
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGA 331 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGA 331 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHH
Confidence 12233344444444431 125574332 233444466666555556666666555432 22668888
Q ss_pred HHHHHHh
Q psy2915 721 VKVLMKL 727 (883)
Q Consensus 721 i~~i~~~ 727 (883)
+..+..+
T Consensus 332 i~GL~~l 338 (343)
T cd08050 332 IVGLSAL 338 (343)
T ss_pred HHHHHHh
Confidence 8888776
No 313
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=1.3e+03 Score=28.23 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHhccCCc--------hh-hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHH
Q psy2915 128 SNPLIRALAVRTMGCIRV--------DK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDL 198 (883)
Q Consensus 128 ~n~~vr~lALr~L~~i~~--------~~-~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~l 198 (883)
.|+.-..-|+|.++++.+ .. +-..+.+.|...+.++..+.|..|+.-+.++-.--++...--...+...+.
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~nc 507 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNC 507 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 356666789999998865 11 223455777778899999999999999998843223322112344566667
Q ss_pred hcCCChhHHHHHHHHHHhcccc
Q psy2915 199 LSDSNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 199 L~D~d~~V~~~a~~~L~ei~~~ 220 (883)
+.+++--|+..|.-|+.-...+
T Consensus 508 l~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 508 LKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HhcCCcchhhhHHHHHHHHHhc
Confidence 7788888888888877666543
No 314
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=25.33 E-value=4.9e+02 Score=23.21 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=38.3
Q ss_pred CChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcC--CChhHHHHHHHHHHHHHhc
Q psy2915 593 EDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSD--SNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 593 ~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D--~d~~V~~~a~~~l~~i~~~ 650 (883)
++..-|+.|+.++..+.+..++.+. .+.+.+..+|.. +.++.+..|+.+-..+.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~--~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHIS--SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 5566788888888888887666653 455666555542 3448888888877777654
No 315
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=24.87 E-value=1.3e+02 Score=28.62 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCC
Q psy2915 149 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS 202 (883)
Q Consensus 149 ~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~ 202 (883)
.+.+...+..++.++++.|+|.|..|+..- .+|... .+.+.|.++++|.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~---pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLT---PYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHH---hHHHHHHHHcCcc
Confidence 355666777889999999999999998853 233332 2557788888775
No 316
>KOG0803|consensus
Probab=24.65 E-value=1.4e+03 Score=30.33 Aligned_cols=99 Identities=15% Similarity=0.027 Sum_probs=65.2
Q ss_pred HHhhcCCCCHHHHHHHHHHhcCCChhhh-------hHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc--ccH
Q psy2915 551 FVKDCEDSNPLIRALAVRTMGCIRVDKI-------TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--QGF 621 (883)
Q Consensus 551 l~kdl~~~n~~vr~~AL~~L~~i~~~~~-------~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~ 621 (883)
+.|-+.-.|+..+.-|+..|+++.++.- .+.......+++.|.+..||...-..+.++...-...+.. ..+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3344556778888888888887755332 2223345677888999999999888888777654433210 112
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 622 LDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 622 ~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
++...---.|.+..|-.+|-..+.....
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcC
Confidence 2222223358899999999888888875
No 317
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=24.26 E-value=7.4e+02 Score=24.93 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHhhhHHHHhccCCcchHHHHHHHHHHH
Q psy2915 739 STLTKKLAPPLVTLLSSEPEVQYVALRNINLI 770 (883)
Q Consensus 739 ~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l 770 (883)
.+....+++.|...+.++|++|-.++..|..|
T Consensus 166 ~~~F~~~a~~L~~~L~~~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 166 AESFPSFAKLLGNALYDQPDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 44557888888888999999999999888765
No 318
>KOG1848|consensus
Probab=23.91 E-value=5.1e+02 Score=33.80 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHH----HHHHHHhc
Q psy2915 150 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFL----DQLKDLLS 200 (883)
Q Consensus 150 ~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~----~~L~~lL~ 200 (883)
-.+...+.++-+|+.+.||+.|+.++.+++.-+...++...|- ..+.++|+
T Consensus 996 i~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 996 IMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 4466777788899999999999999999998777777654454 34455554
No 319
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=23.74 E-value=3.1e+02 Score=28.56 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhc-ChhhH------------HHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHhhchhh------HHH
Q psy2915 334 PIYVKLEKLDIMIRLA-SQANI------------AQVLSELKEYATE-VDVDFVRKAVRAIGRCAIKVEQS------AER 393 (883)
Q Consensus 334 ~~~Ir~~aL~iL~~l~-~~~nv------------~~Il~eL~~~~~~-~d~~~r~~ai~aI~~la~k~~~~------~~~ 393 (883)
+.+=|+.|||+|++|+ .+.|| +.++.-|..++.. .+.-.|.-++.-+..++.-.... .+.
T Consensus 137 ~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4456777777777765 34454 5566667777644 45556666666666666433222 245
Q ss_pred HHHHHHHHHHhH
Q psy2915 394 CVSTLLDLIQTK 405 (883)
Q Consensus 394 ~v~~Ll~lL~~~ 405 (883)
++..|+.++.+.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 666777766653
No 320
>KOG2199|consensus
Probab=23.64 E-value=7.9e+02 Score=27.44 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=48.4
Q ss_pred HHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh-------hh-hhHHHHHHHHhhcC-CCChHHHhh
Q psy2915 530 YLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV-------DK-ITEYLCEPLRKCLK-DEDPYVRKT 600 (883)
Q Consensus 530 yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~-------~~-~~~~l~~~l~~~l~-d~~~~VRk~ 600 (883)
.+.+......+++...-++..|.|-+.+.+|.|...||+.++.+.. .| -...+...+.+++. ..++.|+++
T Consensus 29 IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k 108 (462)
T KOG2199|consen 29 ILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEK 108 (462)
T ss_pred HHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHH
Confidence 3444444566677777788889999999999998888887774311 12 22235556666666 456666665
Q ss_pred HHHHH
Q psy2915 601 AAVCV 605 (883)
Q Consensus 601 A~~al 605 (883)
-...+
T Consensus 109 ~~~lv 113 (462)
T KOG2199|consen 109 MRDLV 113 (462)
T ss_pred HHHHH
Confidence 44333
No 321
>KOG1848|consensus
Probab=23.53 E-value=6.8e+02 Score=32.71 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHH----HHHHhhc
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD----QLKDLLS 630 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~----~l~~lL~ 630 (883)
+.-.+...+.++.+|..+.||+-|+..+.+++..+...+...-|.. .+..+|+
T Consensus 994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd 1050 (1610)
T KOG1848|consen 994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLD 1050 (1610)
T ss_pred HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhc
Confidence 3444566777888999999999999999999987766665433433 3444555
No 322
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.46 E-value=3e+02 Score=23.51 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=46.9
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHHHHHHHHhhhCccccccccHHH---HHHHHhcCCChhHHHHHHHHHHh
Q psy2915 150 EYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD---QLKDLLSDSNPMVVANAVAAILL 216 (883)
Q Consensus 150 ~~l~~~v~~~l-~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~---~L~~lL~D~d~~V~~~a~~~L~e 216 (883)
..+..+....+ ..++..||.....|+.++.....+.+. .+|.. .+.....|.+..+...|+..+..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIK-SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 34444445553 456889999999999999998877775 45643 44445568889998888876653
No 323
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=23.37 E-value=2.6e+02 Score=27.47 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=41.4
Q ss_pred ccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCC
Q psy2915 520 TDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKD 592 (883)
Q Consensus 520 s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d 592 (883)
-++....+-.|-.+..+...+++.++ ..+.... +++.||.-|++.|.++.+.++...+. .+.++++.
T Consensus 50 w~~~~~v~e~~~lL~~W~~i~~~~aL---eLL~~~f--~d~~VR~yAV~~L~~~sd~eL~~yL~-QLVQaLKy 116 (171)
T cd00872 50 WNKRDDVAQMYQLLKRWPKLKPEQAL---ELLDCNF--PDEHVREFAVRCLEKLSDDELLQYLL-QLVQVLKY 116 (171)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHH---HHCCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHc
Confidence 34444445566666677666665532 2222233 35889999999999988888766544 44556654
No 324
>KOG0905|consensus
Probab=23.36 E-value=8.7e+02 Score=31.31 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=49.7
Q ss_pred cchhHHHH--HHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC----CCC
Q psy2915 521 DNLELKKL--VYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK----DED 594 (883)
Q Consensus 521 ~~~~~kr~--~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~----d~~ 594 (883)
.+|....+ .|-.+..|....|..++-..-+ +=++..||..|++-++++.+.++.+. +|.+.++|+ -++
T Consensus 868 p~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~-----kfPDqeVR~~AVqwi~~ls~DeL~d~-LPQlVQALK~E~yl~S 941 (1639)
T KOG0905|consen 868 PSWDWGNLMDVYQLLHQWAPLRPLIALELLLP-----KFPDQEVRAHAVQWIARLSNDELLDY-LPQLVQALKFELYLKS 941 (1639)
T ss_pred CCCchhhHHHHHHHHHhccccCHHHHHHhhcc-----cCCcHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHHHhccC
Confidence 45555544 7777888888887764432211 34789999999999999998887664 344455554 456
Q ss_pred hHHHhh
Q psy2915 595 PYVRKT 600 (883)
Q Consensus 595 ~~VRk~ 600 (883)
+.||--
T Consensus 942 ~Lv~FL 947 (1639)
T KOG0905|consen 942 ALVQFL 947 (1639)
T ss_pred HHHHHH
Confidence 666643
No 325
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=23.32 E-value=1.2e+02 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhccccCC
Q psy2915 191 FLDQLKDLLSDSNPMVVANAVAAILLLPRKSY 222 (883)
Q Consensus 191 ~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~ 222 (883)
+.+.+..++.|.++.|..+.=.+|.++.++.+
T Consensus 155 if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~ 186 (222)
T COG4912 155 IFEIIELLLGDKEFFVQKAIGWALRQIGKHSN 186 (222)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHHhhch
Confidence 44555555555555555555555555555333
No 326
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=23.32 E-value=1.5e+02 Score=26.30 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHH
Q psy2915 148 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKD 197 (883)
Q Consensus 148 ~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~ 197 (883)
.++.+...+..+++|-+|.||.-|..-+--+.+.+|+.+-...|...+..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~ 57 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPN 57 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHH
Confidence 45566777888999999999999999999899999988323445555544
No 327
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=21.95 E-value=5.9e+02 Score=24.41 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhcc
Q psy2915 27 KEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDI 106 (883)
Q Consensus 27 ~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 106 (883)
....++.+++.-+..... ....+.++..+...+....+-.|-.+....+.+|+-++-.
T Consensus 20 ~~~ek~llw~~R~~~~~~---p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~L------------------- 77 (152)
T cd00864 20 TEEEKELLWKFRYYLLNV---PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALEL------------------- 77 (152)
T ss_pred CHHHHHHHHHHHHHHhhC---hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHH-------------------
Confidence 566777777776665543 4667777777777888877777777777766666654422
Q ss_pred ccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCC
Q psy2915 107 RSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 163 (883)
Q Consensus 107 ~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~ 163 (883)
+.... +++.||.-|++.|.+..+.++..++- .+++++..+
T Consensus 78 --------------L~~~~--~~~~vr~yAv~~L~~~~~~~l~~ylp-QLVQaLkye 117 (152)
T cd00864 78 --------------LSPKY--PDPVVRQYAVRVLESASDDELLLYLP-QLVQALKYE 117 (152)
T ss_pred --------------cCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhcc
Confidence 22223 34999999999999987777766554 445555433
No 328
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.86 E-value=1.5e+03 Score=27.77 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=63.8
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHH-----HHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc--
Q psy2915 545 IMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE-- 617 (883)
Q Consensus 545 ~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l-----~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~-- 617 (883)
-.+-+.+.+-+.++++..-...|.++..+..-+..+.- .+.-++..++.-..++......+.|+....|+.+.
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44556666767777777777777777765432221110 01111222223334555566666777666655432
Q ss_pred --cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 618 --DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 618 --~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
++.....+-.++-.++..+..+|..++..+...
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 344556666777888999999999999999864
No 329
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=21.60 E-value=4.5e+02 Score=25.84 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy2915 341 KLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTL 398 (883)
Q Consensus 341 aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~L 398 (883)
++.-+..=.++.|.+.+++++.+...+.+++....++..|...+...|.....+...+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~ 60 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLC 60 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHH
Confidence 3444444455899999999999887666889999999999999988876655544443
No 330
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=21.47 E-value=4.1e+02 Score=26.25 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=37.7
Q ss_pred hhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcC-CCChHHH
Q psy2915 535 NYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK-DEDPYVR 598 (883)
Q Consensus 535 ~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~-d~~~~VR 598 (883)
.+...+|.. +...|..... ++|.||.-|+++|.+..+.++.-++. .+.++|+ |...+|+
T Consensus 64 ~W~pi~p~~---ALell~~~y~-~~~~Vr~yAvr~L~~~~~e~l~~Ylp-QLVQaLryd~~~~l~ 123 (175)
T cd00871 64 YWAPVSPVQ---ALSLFTPQYP-GHPLVLQYAVRVLESYPVETVFFYIP-QIVQALRYDKMGYVE 123 (175)
T ss_pred CCCCCCHHH---HHHHhCcccC-CCHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhccccchHH
Confidence 455555544 3333333333 47999999999999988888766644 4556665 5555554
No 331
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=21.35 E-value=3.4e+02 Score=29.53 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=48.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHHhhcCCCChhhhhhh-HHHHHhhcCCchhhhhhhhhHHH-
Q psy2915 422 EGFHDENTQVQLQLLTAIVKLFLKRP--TDTQELVQQVLSLATQDSDNPDLRDRG-FIYWRLLSTGNTFYILLHLTRLV- 497 (883)
Q Consensus 422 ~~~~~~~~~vr~~~L~al~Kl~~~~~--~~~~~~l~~ll~~~~~d~~~~evrdrA-~~y~~ll~~~~~~~~~~~~l~kl- 497 (883)
+.|...+.+.|.+++..+..-+.... .....++..++..-.+-..||.--=.| .-...++...++. ++.+.++
T Consensus 63 kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~---Ke~al~V~ 139 (312)
T PF04869_consen 63 KAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA---KEQALRVT 139 (312)
T ss_dssp HHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH---HHHHTT--
T ss_pred HHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH---HHHHHccc
Confidence 45566667777777776665544333 222235555554211111233222223 2233344333221 2444444
Q ss_pred HHhhccCCCcccchHHHHHhhcc----cchhHHHHHHHHH-HhhccCC
Q psy2915 498 IASMTVGKDVSALFPDVVNCMQT----DNLELKKLVYLYL-MNYAKSH 540 (883)
Q Consensus 498 i~~~~~g~~~~~~~~~vi~ll~s----~~~~~kr~~yl~~-~~~~~~~ 540 (883)
......|++....+..+..++.+ ++-.--++||+.+ ..|.-++
T Consensus 140 ~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~ 187 (312)
T PF04869_consen 140 EGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC 187 (312)
T ss_dssp EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-
T ss_pred CCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC
Confidence 23334566766677777776655 2223336688874 4444443
No 332
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=21.22 E-value=2.3e+03 Score=29.51 Aligned_cols=126 Identities=15% Similarity=0.197 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHhhccC---CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC-----Chhh-----hhHHHHHHHHhh
Q psy2915 523 LELKKLVYLYLMNYAKS---HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI-----RVDK-----ITEYLCEPLRKC 589 (883)
Q Consensus 523 ~~~kr~~yl~~~~~~~~---~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i-----~~~~-----~~~~l~~~l~~~ 589 (883)
+.+.+++-.+...+.+. .+.+-..+.+.+.+--.++|..++.-|+.+|..+ ..+| +...++.++...
T Consensus 1111 FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~i 1190 (1780)
T PLN03076 1111 FSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIV 1190 (1780)
T ss_pred hHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHH
Confidence 44555554444333222 1333344666677765677777888888866542 1222 334455555554
Q ss_pred c-CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHH---HhhcCCChhHHHHHHHHHHHHHh
Q psy2915 590 L-KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK---DLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 590 l-~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~---~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
+ +..+..||...+.|+.++.....+.+. ..|-..+. ....|+++.+...|...+..|..
T Consensus 1191 m~~s~~~eVrE~ILeCv~qmI~s~~~nIk-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1191 MRKSNAVEIRELIIRCVSQMVLSRVNNVK-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 4 356889999999999999887666655 35654443 33458889999999999988875
No 333
>KOG2199|consensus
Probab=20.90 E-value=4.5e+02 Score=29.26 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc----ccccHHHHHHHhhc-C
Q psy2915 557 DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV----EDQGFLDQLKDLLS-D 631 (883)
Q Consensus 557 ~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~----~~~~~~~~l~~lL~-D 631 (883)
.+|..+-..+-..+++ +++.....+..|.+.+++.+|+|---|+--+..+.......+ ...+|...|..++. .
T Consensus 23 ~enW~~IlDvCD~v~~--~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGS--DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK 100 (462)
T ss_pred cccHHHHHHHHHhhcC--CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc
Confidence 3444443333334443 346777888899999999999999988887777776544333 23578999999999 4
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHH
Q psy2915 632 SNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLT 670 (883)
Q Consensus 632 ~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~ 670 (883)
..+.|+...-.++.+.... =....-+.++...+.+|-+
T Consensus 101 ~h~kV~~k~~~lv~eWsee-~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 101 AHPKVCEKMRDLVKEWSEE-FKKDPSLSLISALYKKLKE 138 (462)
T ss_pred ccHHHHHHHHHHHHHHHHH-hccCcchhHHHHHHHHHHH
Confidence 5677776666665555421 1112234555544444443
No 334
>KOG1993|consensus
Probab=20.66 E-value=1.6e+03 Score=27.62 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCh--hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHh-hcccccccccHHHHHHHhhcCC-ChhH
Q psy2915 561 LIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD-INAQLVEDQGFLDQLKDLLSDS-NPMV 636 (883)
Q Consensus 561 ~vr~~AL~~L~~i~~--~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~-~~~~~~~~~~~~~~l~~lL~D~-d~~V 636 (883)
.--+.|...+.++-+ .-+.+.+.|.+. .-.+..-.+||+.+.-+++-.. ..++... +-.-..+.++|+|. |.-|
T Consensus 466 aa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k-~l~Y~a~lnLL~d~~D~vV 543 (978)
T KOG1993|consen 466 AAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELK-PLLYCAFLNLLQDQNDLVV 543 (978)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHH-HHHHHHHHHhcCcccccee
Confidence 334566666666644 335556666655 1123344567777777776543 1222221 12234455677776 7788
Q ss_pred HHHHHHHHHHHHhcCC-CchhhHHhcHHHHHHHHHHcccCChh-hHHHHHHHHhc
Q psy2915 637 VANAVAALSEMNEAST-SGVALIEMNAQTINKLLTALNECTEW-GQVFILDSLSN 689 (883)
Q Consensus 637 ~~~a~~~l~~i~~~~~-~~~~~~~l~~~~~~~L~~~l~~~~~w-~qi~iL~lL~~ 689 (883)
+.+++..+.-....-. ..+.+.++.+..+..+.+.+....+. .++.+|.+++.
T Consensus 544 ~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 544 RLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLST 598 (978)
T ss_pred ehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888888887764211 22345555566666666655443222 24445555544
No 335
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=20.64 E-value=7.4e+02 Score=28.94 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=88.2
Q ss_pred HHHhhcCCCChHHHhhHHHHHHHHHhhcc---cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhc
Q psy2915 585 PLRKCLKDEDPYVRKTAAVCVAKLYDINA---QLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMN 661 (883)
Q Consensus 585 ~l~~~l~d~~~~VRk~A~~al~~l~~~~~---~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~ 661 (883)
.+.++|.+|.-.|...+..++....-... +.+-...+++.+.+++...|...+.+..-++..+--+..+.+.+..+.
T Consensus 435 lLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~La 514 (743)
T COG5369 435 LLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLA 514 (743)
T ss_pred HHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHH
Confidence 45566777666666666555544332111 112234677888888887777888777777776654433444444444
Q ss_pred HHHHHHHHHHcccCChhhHHHHHHHHhccCCCCh--HH----------HHHHHHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 662 AQTINKLLTALNECTEWGQVFILDSLSNYSPKDD--RE----------AQSICERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 662 ~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~--~~----------~~~il~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
.--+.+++...++++--.|-..+++|..+.=... +. ...+.+.+...++..|+.-..+.+-.+++++
T Consensus 515 kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~a 593 (743)
T COG5369 515 KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNA 593 (743)
T ss_pred hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH
Confidence 4456777777666665578889999988752110 11 1134566667777788877777766666653
No 336
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=20.58 E-value=3.3e+02 Score=27.08 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCC
Q psy2915 523 LELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 593 (883)
Q Consensus 523 ~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~ 593 (883)
....+-.|-.+..+...+++. +...+..... ++.||.-|++.|.+..+.++... +|.+.++++..
T Consensus 58 ~~e~~e~~~ll~~W~~~~~~~---aL~LL~~~~~--~~~Vr~yAV~~L~~~~d~~l~~y-LpQLVQaLr~E 122 (184)
T smart00145 58 ADEVAQALSLLKKWAPLDPED---ALELLSPKFP--DPFVRAYAVERLESASDEELLLY-LLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHcCCCCCHHH---HHHHhCccCC--CHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHcc
Confidence 333444566666676666555 3344444444 68999999999999887776554 44555666533
No 337
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.55 E-value=1e+03 Score=25.04 Aligned_cols=41 Identities=29% Similarity=0.443 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHh
Q psy2915 353 NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT 404 (883)
Q Consensus 353 nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~ 404 (883)
|++.|+++|... +..+=++++++... ..+..++.|+++|.+
T Consensus 2 ~~~~il~~l~~~----~~~~P~~al~~A~~-------~~e~i~P~Ll~~Le~ 42 (249)
T PF06685_consen 2 NIEEILEQLSYN----DGEFPREALEAAIE-------QREEITPELLKILED 42 (249)
T ss_pred CHHHHHHHHHhc----cccCcHHHHHHHHH-------CHHHhhHHHHHHHHH
Confidence 567777777754 33444566665542 245566667776665
Done!