Query psy2915
Match_columns 883
No_of_seqs 317 out of 2569
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 20:53:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 1.3E-61 4.4E-66 575.9 44.0 455 1-485 1-534 (591)
2 2vgl_A Adaptor protein complex 100.0 1.1E-59 3.8E-64 558.9 28.8 434 12-485 34-591 (621)
3 1w63_A Adapter-related protein 100.0 1.9E-55 6.5E-60 524.5 29.2 431 12-485 33-579 (618)
4 2vgl_B AP-2 complex subunit be 100.0 1E-50 3.5E-55 482.2 37.5 394 489-883 29-471 (591)
5 2vgl_A Adaptor protein complex 100.0 7E-49 2.4E-53 466.2 28.8 394 470-873 33-513 (621)
6 1w63_A Adapter-related protein 100.0 2.3E-46 7.8E-51 446.3 29.0 392 470-873 32-494 (618)
7 3tjz_B Coatomer subunit gamma; 100.0 3.1E-42 1.1E-46 373.6 18.0 305 486-810 40-355 (355)
8 3tjz_B Coatomer subunit gamma; 100.0 7.7E-43 2.6E-47 378.4 11.6 306 5-351 18-354 (355)
9 1b3u_A Protein (protein phosph 99.9 3.1E-23 1.1E-27 246.0 39.1 552 115-770 9-585 (588)
10 1b3u_A Protein (protein phosph 99.9 5.7E-21 1.9E-25 226.5 42.9 501 125-727 57-585 (588)
11 4fdd_A Transportin-1; heat rep 99.9 6.8E-19 2.3E-23 218.4 49.5 692 14-871 11-826 (852)
12 4fdd_A Transportin-1; heat rep 99.9 3.4E-18 1.2E-22 212.1 54.3 642 118-859 15-774 (852)
13 2bpt_A Importin beta-1 subunit 99.9 4.3E-17 1.5E-21 202.3 56.9 640 147-868 91-856 (861)
14 1u6g_C TIP120 protein, CAND1; 99.8 9.4E-17 3.2E-21 207.0 55.2 776 14-871 7-1037(1230)
15 1u6g_C TIP120 protein, CAND1; 99.8 2.7E-17 9.4E-22 212.0 45.7 622 118-811 8-724 (1230)
16 2bpt_A Importin beta-1 subunit 99.8 3.7E-16 1.3E-20 193.9 53.0 687 14-810 5-813 (861)
17 1qgr_A Protein (importin beta 99.8 3.3E-15 1.1E-19 185.7 51.3 660 128-869 49-871 (876)
18 1qgr_A Protein (importin beta 99.8 9.9E-14 3.4E-18 172.3 55.8 632 45-774 124-873 (876)
19 2z6g_A B-catenin; FULL-length, 99.7 1.6E-13 5.5E-18 167.4 37.8 510 117-778 116-669 (780)
20 2z6h_A Catenin beta-1, beta-ca 99.6 2.9E-12 9.8E-17 153.6 40.7 475 46-651 10-529 (644)
21 1jdh_A Beta-catenin; beta-cate 99.6 7E-13 2.4E-17 154.7 34.4 446 117-647 18-528 (529)
22 2z6g_A B-catenin; FULL-length, 99.6 1.2E-12 4E-17 159.8 35.4 451 117-652 151-666 (780)
23 2jdq_A Importin alpha-1 subuni 99.6 6E-13 2.1E-17 151.8 27.3 380 118-650 22-444 (450)
24 3now_A UNC-45 protein, SD10334 99.5 7.7E-11 2.6E-15 140.9 44.3 616 121-773 54-783 (810)
25 1wa5_B Importin alpha subunit; 99.5 2.8E-12 9.6E-17 150.0 31.0 376 152-650 88-511 (530)
26 3now_A UNC-45 protein, SD10334 99.5 3.7E-11 1.3E-15 143.6 39.0 438 117-649 291-782 (810)
27 1jdh_A Beta-catenin; beta-cate 99.5 7.7E-11 2.6E-15 137.4 38.8 475 145-770 11-528 (529)
28 1ibr_B P95, importin beta-1 su 99.5 1.2E-11 4.1E-16 141.4 30.5 245 120-442 5-286 (462)
29 2z6h_A Catenin beta-1, beta-ca 99.5 9.4E-11 3.2E-15 140.3 39.4 472 118-728 16-526 (644)
30 2jdq_A Importin alpha-1 subuni 99.5 1.7E-11 5.8E-16 139.7 31.1 332 287-650 21-391 (450)
31 4b8j_A Importin subunit alpha- 99.5 1.6E-11 5.4E-16 143.4 31.2 375 153-650 76-497 (528)
32 1wa5_B Importin alpha subunit; 99.4 3.4E-11 1.2E-15 140.7 30.1 376 421-811 93-513 (530)
33 1oyz_A Hypothetical protein YI 99.4 2.4E-11 8E-16 129.5 22.1 253 510-804 24-278 (280)
34 1oyz_A Hypothetical protein YI 99.4 3.9E-11 1.3E-15 127.8 23.5 249 418-724 26-277 (280)
35 4b8j_A Importin subunit alpha- 99.4 1.2E-10 4.3E-15 135.8 29.7 374 420-810 79-498 (528)
36 1ibr_B P95, importin beta-1 su 99.4 4.5E-11 1.6E-15 136.5 24.9 370 290-733 6-441 (462)
37 3ul1_B Importin subunit alpha- 99.3 1.2E-09 4.1E-14 126.8 35.3 330 288-649 59-430 (510)
38 3ul1_B Importin subunit alpha- 99.3 5.1E-10 1.8E-14 129.9 28.4 374 417-807 59-477 (510)
39 3tpo_A Importin subunit alpha- 99.3 9.8E-10 3.3E-14 128.2 30.5 373 417-806 78-495 (529)
40 3ltm_A Alpha-REP4; protein eng 99.3 8.8E-11 3E-15 119.4 17.7 149 549-727 22-170 (211)
41 3tpo_A Importin subunit alpha- 99.3 5E-09 1.7E-13 122.2 34.6 330 288-649 78-449 (529)
42 3ltj_A Alpharep-4; protein eng 99.3 1.1E-10 3.8E-15 117.6 17.7 184 508-727 13-196 (201)
43 3ltm_A Alpha-REP4; protein eng 99.3 1.2E-10 4.1E-15 118.3 17.7 185 508-728 18-202 (211)
44 3ltj_A Alpharep-4; protein eng 99.2 1.8E-10 6E-15 116.1 17.8 182 547-771 15-197 (201)
45 4ady_A RPN2, 26S proteasome re 99.1 4.8E-05 1.6E-09 91.3 57.5 287 548-861 394-711 (963)
46 1wa5_C Importin alpha RE-expor 99.1 4E-06 1.4E-10 104.9 48.7 246 521-773 373-671 (960)
47 2x19_B Importin-13; nuclear tr 99.0 2E-05 7E-10 98.6 55.1 314 543-871 442-848 (963)
48 4hxt_A De novo protein OR329; 99.0 2.1E-08 7.2E-13 104.1 22.0 225 548-776 4-245 (252)
49 4ady_A RPN2, 26S proteasome re 98.9 1.5E-07 5E-12 112.8 27.6 293 297-652 370-679 (963)
50 4hxt_A De novo protein OR329; 98.9 8.1E-08 2.8E-12 99.7 21.7 218 511-729 4-241 (252)
51 4db8_A Armadillo-repeat protei 98.9 3.4E-08 1.2E-12 102.9 17.7 222 506-728 9-250 (252)
52 4db8_A Armadillo-repeat protei 98.8 9.4E-08 3.2E-12 99.5 17.0 219 548-770 14-249 (252)
53 4db6_A Armadillo repeat protei 98.7 3.3E-07 1.1E-11 92.5 18.9 187 504-728 7-208 (210)
54 3opb_A SWI5-dependent HO expre 98.7 0.00018 6.2E-09 84.6 44.2 495 131-732 151-731 (778)
55 2db0_A 253AA long hypothetical 98.7 2E-06 6.7E-11 81.1 21.5 212 415-649 32-246 (253)
56 2x1g_F Cadmus; transport prote 98.7 0.00015 5.3E-09 90.7 45.9 121 525-650 437-573 (971)
57 3nmz_A APC variant protein; pr 98.7 1.8E-05 6.3E-10 89.2 32.5 214 522-776 213-454 (458)
58 3ibv_A Exportin-T; karyopherin 98.7 0.00029 1E-08 87.4 45.7 590 59-778 18-736 (980)
59 1xm9_A Plakophilin 1; armadill 98.7 1.3E-05 4.4E-10 91.3 30.7 338 455-812 5-453 (457)
60 4hat_C Exportin-1; heat repeat 98.6 0.00097 3.3E-08 82.9 49.3 107 542-650 447-570 (1023)
61 1te4_A Conserved protein MTH18 98.6 1.4E-08 4.7E-13 94.6 4.4 116 511-645 14-129 (131)
62 3opb_A SWI5-dependent HO expre 98.6 3.8E-05 1.3E-09 90.3 33.9 459 288-808 170-728 (778)
63 3l6x_A Catenin delta-1; cateni 98.6 2.6E-05 8.9E-10 90.2 32.2 103 117-219 49-163 (584)
64 4db6_A Armadillo repeat protei 98.6 3.1E-07 1.1E-11 92.6 14.5 153 44-221 7-169 (210)
65 1te4_A Conserved protein MTH18 98.6 1.2E-08 4.1E-13 95.1 3.3 90 547-649 13-102 (131)
66 2x1g_F Cadmus; transport prote 98.6 0.00045 1.5E-08 86.4 45.4 128 521-652 476-618 (971)
67 1wa5_C Importin alpha RE-expor 98.6 0.00018 6E-09 90.0 41.3 216 595-811 375-631 (960)
68 3m1i_C Exportin-1; heat repeat 98.6 0.00018 6.3E-09 90.6 40.9 145 542-690 447-616 (1049)
69 2qk2_A LP04448P; mini spindles 98.6 1.1E-06 3.9E-11 90.9 17.1 195 584-783 18-217 (242)
70 2db0_A 253AA long hypothetical 98.5 2.1E-05 7.2E-10 74.2 21.9 209 549-772 35-246 (253)
71 2qk2_A LP04448P; mini spindles 98.5 1.4E-06 4.7E-11 90.3 16.0 143 582-732 57-208 (242)
72 1xm9_A Plakophilin 1; armadill 98.5 5.6E-05 1.9E-09 86.0 29.4 341 511-871 4-451 (457)
73 2qk1_A Protein STU2; STU2P, XM 98.5 3.6E-06 1.2E-10 87.4 17.1 183 516-733 23-224 (249)
74 3l6x_A Catenin delta-1; cateni 98.4 0.00013 4.5E-09 84.3 29.9 343 453-814 49-482 (584)
75 3b2a_A TON_1937, putative unch 98.4 1.8E-05 6E-10 78.2 18.1 199 594-813 18-223 (265)
76 2qk1_A Protein STU2; STU2P, XM 98.3 1.4E-05 4.7E-10 83.0 16.3 210 586-803 21-245 (249)
77 3nmz_A APC variant protein; pr 98.2 0.00018 6.3E-09 81.0 24.7 305 369-729 95-450 (458)
78 3nmw_A APC variant protein; AR 98.2 4.4E-05 1.5E-09 83.4 18.1 218 559-779 97-341 (354)
79 3gjx_A Exportin-1; transport, 98.2 0.024 8.2E-07 70.3 44.0 107 542-650 473-596 (1073)
80 1xqr_A HSPBP1 protein; armadil 98.1 5E-05 1.7E-09 80.7 17.2 177 561-778 55-244 (296)
81 2x19_B Importin-13; nuclear tr 98.1 0.0068 2.3E-07 75.6 37.3 180 136-404 430-619 (963)
82 1xqr_A HSPBP1 protein; armadil 98.0 5.2E-05 1.8E-09 80.6 14.2 144 547-728 82-237 (296)
83 3b2a_A TON_1937, putative unch 97.9 0.00029 9.9E-09 69.6 16.4 178 417-650 35-219 (265)
84 4ffb_C Protein STU2; tubulin f 97.8 0.00037 1.3E-08 73.4 15.7 181 514-733 14-216 (278)
85 3nmw_A APC variant protein; AR 97.7 0.0013 4.6E-08 71.6 20.2 207 522-729 97-334 (354)
86 3grl_A General vesicular trans 97.7 0.0088 3E-07 68.6 26.3 73 153-225 124-201 (651)
87 3m1i_C Exportin-1; heat repeat 97.6 0.043 1.5E-06 69.0 33.6 223 547-775 345-621 (1049)
88 3a6p_A Exportin-5; exportin-5, 97.5 0.069 2.4E-06 67.9 33.9 92 126-220 57-163 (1204)
89 2of3_A ZYG-9; multifunctional 97.5 0.0024 8.2E-08 65.8 16.6 103 546-650 132-237 (266)
90 4ffb_C Protein STU2; tubulin f 97.5 0.0026 8.8E-08 66.9 17.5 187 586-773 14-213 (278)
91 3u0r_A Apoptosis inhibitor 5; 97.4 0.1 3.5E-06 57.4 28.1 134 511-650 31-164 (507)
92 3l9t_A Putative uncharacterize 97.3 0.0017 5.7E-08 64.9 12.7 136 547-695 72-210 (240)
93 1lrv_A LRV, leucine-rich repea 97.3 0.00036 1.2E-08 71.6 8.0 183 330-644 59-241 (244)
94 1lrv_A LRV, leucine-rich repea 97.3 0.00036 1.2E-08 71.5 7.5 65 123-213 57-121 (244)
95 3u0r_A Apoptosis inhibitor 5; 97.3 0.071 2.4E-06 58.6 25.3 160 426-611 39-206 (507)
96 3grl_A General vesicular trans 97.2 0.014 4.7E-07 67.0 19.7 333 514-873 26-398 (651)
97 3ibv_A Exportin-T; karyopherin 97.2 0.87 3E-05 56.3 48.9 272 565-842 420-779 (980)
98 2iw3_A Elongation factor 3A; a 97.2 0.099 3.4E-06 63.7 27.9 290 159-611 22-325 (986)
99 2iw3_A Elongation factor 3A; a 97.1 0.024 8.2E-07 69.0 21.8 219 547-773 96-325 (986)
100 3gs3_A Symplekin, LD45768P; he 96.9 0.069 2.4E-06 54.7 20.1 134 562-728 31-172 (257)
101 1lsh_A Lipovitellin (LV-1N, LV 96.7 0.044 1.5E-06 68.4 20.1 122 522-648 408-542 (1056)
102 3tt9_A Plakophilin-2; cell adh 96.7 0.031 1.1E-06 56.7 15.3 128 583-752 10-143 (233)
103 3tt9_A Plakophilin-2; cell adh 96.6 0.032 1.1E-06 56.5 15.0 105 546-650 8-125 (233)
104 3gs3_A Symplekin, LD45768P; he 96.6 0.15 5.1E-06 52.2 19.9 212 467-728 10-242 (257)
105 3oc3_A Helicase MOT1, MOT1; re 96.6 0.0063 2.2E-07 67.5 9.8 209 522-768 218-432 (800)
106 2of3_A ZYG-9; multifunctional 96.5 0.022 7.5E-07 58.7 12.7 176 20-223 53-240 (266)
107 3l9t_A Putative uncharacterize 96.3 0.014 4.7E-07 58.4 9.6 132 515-652 77-210 (240)
108 3o2t_A Symplekin; heat repeat, 96.2 0.31 1.1E-05 52.7 20.7 216 132-402 41-273 (386)
109 3oc3_A Helicase MOT1, MOT1; re 96.1 0.11 3.8E-06 57.8 16.0 217 416-648 175-403 (800)
110 3o2t_A Symplekin; heat repeat, 96.1 0.081 2.8E-06 57.3 15.0 135 562-728 41-182 (386)
111 3a6p_A Exportin-5; exportin-5, 95.6 5.4 0.00018 50.5 31.6 73 711-783 543-624 (1204)
112 4hat_C Exportin-1; heat repeat 95.3 8.4 0.00029 47.7 50.6 325 466-808 465-878 (1023)
113 1vsy_5 Proteasome activator BL 95.0 2.5 8.7E-05 51.9 24.7 303 301-612 485-875 (997)
114 1vsy_5 Proteasome activator BL 93.6 16 0.00054 44.9 27.4 110 540-650 837-967 (997)
115 1lsh_A Lipovitellin (LV-1N, LV 93.0 11 0.00036 47.0 25.0 123 514-650 445-577 (1056)
116 3gjx_A Exportin-1; transport, 92.5 27 0.00091 43.3 35.3 162 563-727 459-645 (1073)
117 4gmo_A Putative uncharacterize 91.0 1.1 3.8E-05 53.1 12.4 61 551-611 39-106 (684)
118 4gmo_A Putative uncharacterize 90.8 0.88 3E-05 54.0 11.3 67 582-650 36-106 (684)
119 3dad_A FH1/FH2 domain-containi 87.2 8.9 0.00031 40.3 14.3 101 552-652 124-234 (339)
120 2b6c_A Hypothetical protein EF 81.1 2.7 9.3E-05 41.8 7.0 68 549-616 127-194 (220)
121 3ldz_A STAM-1, signal transduc 76.3 12 0.0004 34.2 9.2 75 537-611 33-115 (140)
122 2b6c_A Hypothetical protein EF 76.1 3.8 0.00013 40.8 6.3 69 152-224 125-193 (220)
123 3dad_A FH1/FH2 domain-containi 75.0 68 0.0023 33.6 15.5 141 513-654 122-291 (339)
124 3jxy_A Alkylpurine DNA glycosy 75.0 3.6 0.00012 41.3 5.9 68 550-617 135-202 (232)
125 1ho8_A Vacuolar ATP synthase s 73.7 1E+02 0.0036 34.0 17.3 47 835-881 391-446 (480)
126 1t06_A Hypothetical protein; s 73.1 8.8 0.0003 38.5 8.2 78 549-628 111-196 (235)
127 1t06_A Hypothetical protein; s 71.1 6.6 0.00023 39.4 6.7 75 121-197 113-195 (235)
128 1x5b_A Signal transducing adap 69.5 19 0.00064 33.8 9.0 72 540-611 46-126 (163)
129 3jxy_A Alkylpurine DNA glycosy 69.3 5.4 0.00019 40.0 5.6 66 155-224 135-200 (232)
130 3zyq_A Hepatocyte growth facto 68.0 28 0.00097 34.5 10.5 72 535-610 34-118 (226)
131 1x5b_A Signal transducing adap 66.1 36 0.0012 31.8 10.2 54 591-650 29-82 (163)
132 3g2s_A C-terminal fragment of 65.5 73 0.0025 29.2 12.0 77 287-391 49-132 (149)
133 3fga_B Serine/threonine-protei 64.6 1.6E+02 0.0054 31.8 17.5 177 618-803 127-317 (403)
134 3g2s_A C-terminal fragment of 62.6 50 0.0017 30.3 10.3 85 530-614 32-130 (149)
135 3ldz_A STAM-1, signal transduc 60.0 50 0.0017 29.9 9.7 104 591-737 19-122 (140)
136 1dvp_A HRS, hepatocyte growth 59.6 39 0.0013 33.2 9.7 67 538-608 34-113 (220)
137 3s4w_B Protein FACD2, fanconi 58.6 3.6E+02 0.012 33.9 27.8 179 544-727 362-551 (1323)
138 1mhq_A ADP-ribosylation factor 58.0 25 0.00086 32.3 7.4 72 540-611 32-117 (148)
139 1juq_A ADP-ribosylation factor 56.5 52 0.0018 31.0 9.5 49 600-650 32-80 (171)
140 1juq_A ADP-ribosylation factor 55.7 48 0.0016 31.2 9.1 82 532-613 36-131 (171)
141 1elk_A Target of MYB1; superhe 48.5 70 0.0024 29.6 8.8 78 533-610 40-130 (157)
142 3ebb_A Phospholipase A2-activa 47.9 2.5E+02 0.0086 28.9 14.5 53 558-610 160-220 (304)
143 1mhq_A ADP-ribosylation factor 45.8 1.8E+02 0.006 26.5 13.0 98 600-736 20-123 (148)
144 3ut4_A CTHE_2751, putative unc 45.2 83 0.0028 28.2 8.2 70 565-644 16-85 (134)
145 1ho8_A Vacuolar ATP synthase s 42.0 2.3E+02 0.0079 31.2 12.9 71 699-773 394-477 (480)
146 1upk_A MO25 protein; transfera 40.2 3.4E+02 0.012 28.3 20.0 106 587-727 170-281 (341)
147 1upk_A MO25 protein; transfera 37.0 3.9E+02 0.013 27.9 26.7 95 584-693 212-312 (341)
148 3zyq_A Hepatocyte growth facto 36.2 1.6E+02 0.0055 28.9 9.8 73 579-651 43-120 (226)
149 3qb2_A Immunity factor for SPN 34.3 50 0.0017 30.3 5.0 87 792-882 66-158 (187)
150 1elk_A Target of MYB1; superhe 33.5 2.2E+02 0.0075 26.1 9.7 54 592-651 31-85 (157)
151 1vsy_4 Proteasome activator BL 29.0 2.1E+02 0.0073 33.9 10.9 73 576-649 334-412 (799)
152 1dvp_A HRS, hepatocyte growth 27.6 2.2E+02 0.0076 27.7 9.2 53 121-176 47-111 (220)
153 3ut4_A CTHE_2751, putative unc 26.7 1.7E+02 0.006 26.1 7.2 70 136-215 17-86 (134)
154 1vdy_A Hypothetical protein (R 25.0 64 0.0022 29.2 4.2 40 577-616 45-84 (140)
155 3rru_A TOM1L1 protein; structu 23.9 1.6E+02 0.0054 27.0 6.7 39 285-323 52-92 (152)
156 1h2v_C 80 kDa nuclear CAP bind 22.2 7.2E+02 0.025 29.2 13.6 121 343-464 14-140 (771)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=1.3e-61 Score=575.93 Aligned_cols=455 Identities=81% Similarity=1.175 Sum_probs=412.2
Q ss_pred CCCCccccccCcCcHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccC
Q psy2915 1 MTDSKYFTTTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSH 80 (883)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~ 80 (883)
|||++||++++++|++|||+.|++++.++|+++++|++|++++|+|++++||+++++++++|+++||+||+|++.+++.+
T Consensus 1 ~~~~~~f~~~~~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~ 80 (591)
T 2vgl_B 1 MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ 80 (591)
T ss_dssp ---CCTTCCCSSSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCcchhcccccCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhc
Q psy2915 81 PDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 160 (883)
Q Consensus 81 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l 160 (883)
||++++++|+ +++||+|+||.+|++|+++||+++.+++.+.+.+.+.+++
T Consensus 81 ~e~~~l~~n~------------------------------l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L 130 (591)
T 2vgl_B 81 PDMAIMAVNS------------------------------FVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 130 (591)
T ss_dssp HHHHHTTHHH------------------------------HGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHS
T ss_pred chHHHHHHHH------------------------------HHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc
Confidence 9999999999 9999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcc--c--------ccccc
Q psy2915 161 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQ--R--------NLSSR 230 (883)
Q Consensus 161 ~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~--~--------~l~~~ 230 (883)
.|++|+|||+|+.|++++++.+|+.+++++|++.+.++|+|+|++|+.+|+.+|.++++..|.. . .++..
T Consensus 131 ~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~ 210 (591)
T 2vgl_B 131 KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTA 210 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHc
Confidence 9999999999999999999999999977789999999999999999999999999999887744 1 12221
Q ss_pred c-cCCCCcHHHHHh-hccccccC-------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHH
Q psy2915 231 K-KQICWNLPYLMN-LSVIYPAW-------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVT 293 (883)
Q Consensus 231 ~-~~~~w~q~~~l~-l~~~~~~~-------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~ 293 (883)
+ ...+|+|+.+++ +..|.|.+ .+++.|++| +|+++++.+...++++.+..+.....+.++|+.
T Consensus 211 l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~ 290 (591)
T 2vgl_B 211 LNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT 290 (591)
T ss_dssp HHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 1 234799999999 88888764 578899999 999999987765532334445566778888888
Q ss_pred hhcCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHH
Q psy2915 294 LLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFV 373 (883)
Q Consensus 294 lL~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r 373 (883)
++++++|+||+||.++..++..+|+.+.+|+..|+|+.+||.+||++|+++|+.+++++|++.|+++|.+|+++.|.++|
T Consensus 291 L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 291 LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHH
Confidence 87888999999999999999999999999998899998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH------------------------------------------------
Q psy2915 374 RKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK------------------------------------------------ 405 (883)
Q Consensus 374 ~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~------------------------------------------------ 405 (883)
++++.+||.++.+||+...|+++.|++++++.
T Consensus 371 ~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~w 450 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIW 450 (591)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999999999999999999988764
Q ss_pred ----hhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhh
Q psy2915 406 ----YAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLL 481 (883)
Q Consensus 406 ----~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll 481 (883)
|++.+++.+++++.+.+.+.+++..||.++++|++|++.+.|+..++.+..+++.+..|+.|+||||||++|++++
T Consensus 451 ilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 451 IVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 4445556788999999999999999999999999999999998777899999999877666899999999999999
Q ss_pred cCCc
Q psy2915 482 STGN 485 (883)
Q Consensus 482 ~~~~ 485 (883)
+.++
T Consensus 531 ~~~~ 534 (591)
T 2vgl_B 531 STDP 534 (591)
T ss_dssp TTCT
T ss_pred CcCH
Confidence 8764
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=1.1e-59 Score=558.89 Aligned_cols=434 Identities=20% Similarity=0.294 Sum_probs=382.0
Q ss_pred cCcHHHHHHHhcC---CChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhc
Q psy2915 12 KGEIFELKGELNS---DKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAF 88 (883)
Q Consensus 12 ~~~~~~~~~~l~~---~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~ 88 (883)
++|++|||+.|++ .+.++|+++++|++|++++|+|++++||+|+++++++|++.||+||+|++.|++.++|+++|++
T Consensus 34 ~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~i 113 (621)
T 2vgl_A 34 NKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLIN 113 (621)
T ss_dssp HHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 4799999999995 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhc--CCCChh
Q psy2915 89 STFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL--KDEDPY 166 (883)
Q Consensus 89 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l--~d~~~~ 166 (883)
|+ ++||++|+||.+|++|||+||++++|++++.+.+.|.+++ .|++||
T Consensus 114 N~------------------------------l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~ 163 (621)
T 2vgl_A 114 NA------------------------------IKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDS 163 (621)
T ss_dssp HH------------------------------HHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHH
T ss_pred HH------------------------------HHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHH
Confidence 99 9999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc-c----ccc----c-----c-
Q psy2915 167 VRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR-N----LSS----R-----K- 231 (883)
Q Consensus 167 VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~-~----l~~----~-----~- 231 (883)
|||+|++|+.|+|+.+|+.+++++|.+.+.++|+|+||+|+.+|+.++.++++.+|..+ . +.+ . .
T Consensus 164 VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 243 (621)
T 2vgl_A 164 VKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTD 243 (621)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999766799999999999999999999999999998776522 1 111 1 0
Q ss_pred -c-------CCCCcHHHHHh-hccccccC-------------C-------------CCCCCc--hH--HHHHHHHHHhhc
Q psy2915 232 -K-------QICWNLPYLMN-LSVIYPAW-------------P-------------LSTINP--HT--PLLKVLMKLMEM 272 (883)
Q Consensus 232 -~-------~~~w~q~~~l~-l~~~~~~~-------------~-------------l~~~n~--~v--~~~~~l~~l~~~ 272 (883)
+ ..+|+|+++++ +..|.+.+ . +++.|+ +| +++++++.+.
T Consensus 244 ~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-- 321 (621)
T 2vgl_A 244 LQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-- 321 (621)
T ss_dssp CSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC--
Confidence 0 13799999999 88888742 0 012244 55 8888887763
Q ss_pred CCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCc--hhHHhccc-ceeecc-CCCHHHHHHHHHHHHH
Q psy2915 273 LPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRP--DILKHEMK-VFFVKY-NDPIYVKLEKLDIMIR 347 (883)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~--~~~~~~~~-~~~~l~-~~~~~Ir~~aL~iL~~ 347 (883)
+. ++++..+++.|.+||+ +++|+||+||.++..++..+| +.+.+|.. ++.|+. ++|.+||++||++|+.
T Consensus 322 --~~----~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 322 --SE----PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp --CC----HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred --Cc----HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 11 3467788999999995 678999999999999999987 67888864 556888 9999999999999999
Q ss_pred hcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH----------------------
Q psy2915 348 LASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK---------------------- 405 (883)
Q Consensus 348 l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~---------------------- 405 (883)
++|++|++.|+++|.+|+.+.|.+||++++++||.+|++||+..+||+++|++++...
T Consensus 396 l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~ 475 (621)
T 2vgl_A 396 MCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV 475 (621)
T ss_dssp HCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC
T ss_pred HcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999999999999999999999999999999998765
Q ss_pred -------------------------------hhhhhCCH-----HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCch
Q psy2915 406 -------------------------------YAERIDNA-----DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTD 449 (883)
Q Consensus 406 -------------------------------~~~~i~~~-----~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~ 449 (883)
|++.+++. .++++.+.++|..++..||.++|+|++|++.+.| +
T Consensus 476 ~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~ 554 (621)
T 2vgl_A 476 QGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E 554 (621)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H
Confidence 34444332 3677888889999999999999999999999886 5
Q ss_pred HHHHHHHHHHHhhc--CCCChhhhhhhHHHHHhhcCCc
Q psy2915 450 TQELVQQVLSLATQ--DSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 450 ~~~~l~~ll~~~~~--d~~~~evrdrA~~y~~ll~~~~ 485 (883)
..+.+..+++.+.+ + .|+||||||++||++++.+.
T Consensus 555 ~~~~i~~~l~~~~~~~~-~d~evrdRA~~y~~Ll~~~~ 591 (621)
T 2vgl_A 555 VKATIQDVLRSDSQLKN-ADVELQQRAVEYLRLSTVAS 591 (621)
T ss_dssp GHHHHHHHHSSHHHHSC-SSHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHccCH
Confidence 67889999999987 6 59999999999999998764
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.9e-55 Score=524.54 Aligned_cols=431 Identities=19% Similarity=0.254 Sum_probs=373.1
Q ss_pred cCcHHHHHHHhcCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccc
Q psy2915 12 KGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTF 91 (883)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~ 91 (883)
++|+++||+.|++++.++|+++++|++|++++|+|++++||+|+++++++|+++||+||+|++.|++.+||+++|++|+
T Consensus 33 ~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~- 111 (618)
T 1w63_A 33 QKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNC- 111 (618)
T ss_dssp HHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHH-
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHH
Q psy2915 92 FYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTA 171 (883)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A 171 (883)
++|||+|+||.+|++|+++||+++.+++++.+.+.|.+++.|++|||||+|
T Consensus 112 -----------------------------l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A 162 (618)
T 1w63_A 112 -----------------------------IKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKA 162 (618)
T ss_dssp -----------------------------HHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred -----------------------------HHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcc----cc----cccccc-----------
Q psy2915 172 AVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQ----RN----LSSRKK----------- 232 (883)
Q Consensus 172 ~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~----~~----l~~~~~----------- 232 (883)
+.|++++++.+|+.++ .|++.+.++|.|+|++|+.+|+.+|.+++..+|.. .. ++..+.
T Consensus 163 ~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~ 240 (618)
T 1w63_A 163 ALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEH 240 (618)
T ss_dssp HHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHHHHHHHChHHHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 9999999999999984 58899999999999999999999999999776531 11 221111
Q ss_pred -----CCCCcHHHHHh-hccccccC-------------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHH
Q psy2915 233 -----QICWNLPYLMN-LSVIYPAW-------------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTK 285 (883)
Q Consensus 233 -----~~~w~q~~~l~-l~~~~~~~-------------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~ 285 (883)
..+|.|+.+++ +..+.+.+ ..++.+++| +++++++.+ .+. +.+..
T Consensus 241 ~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~----~~l~~ 312 (618)
T 1w63_A 241 DVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSE----SGLRV 312 (618)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCC----HHHHH
T ss_pred cccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCC----HHHHH
Confidence 24799999999 77777643 112334455 888888764 222 23455
Q ss_pred HHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHHhcc-cceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q psy2915 286 KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEM-KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKE 363 (883)
Q Consensus 286 ~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~~~-~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~ 363 (883)
.++++|..+|+ +++|+||+||.++..++..+|+.+.+|. .++.|+.|+|.+||++|+++|+.+++++|++.|+++|..
T Consensus 313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~ 392 (618)
T 1w63_A 313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLY 392 (618)
T ss_dssp HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 67889999986 6789999999999999999999999996 678899999999999999999999999999999999999
Q ss_pred hhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH--------------------------------------
Q psy2915 364 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK-------------------------------------- 405 (883)
Q Consensus 364 ~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~-------------------------------------- 405 (883)
|+.+.|.+||.+++.+||.+|.+|++...|+++.++++++..
T Consensus 393 ~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~ 472 (618)
T 1w63_A 393 FLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY 472 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999988765
Q ss_pred ---------------hhhhhCC---------------HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHH
Q psy2915 406 ---------------YAERIDN---------------ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQ 455 (883)
Q Consensus 406 ---------------~~~~i~~---------------~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~ 455 (883)
|++.+.+ ..+++..+.+.+ .+++.||.++++|++|++.+.|+ ..+.+.
T Consensus 473 ~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~-~~~~l~ 550 (618)
T 1w63_A 473 SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTC-TVNRIK 550 (618)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSS-CHHHHH
T ss_pred ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcc-hHHHHH
Confidence 2222211 122233333333 68999999999999999999885 478889
Q ss_pred HHHHHhhcCCCChhhhhhhHHHHHhhcCCc
Q psy2915 456 QVLSLATQDSDNPDLRDRGFIYWRLLSTGN 485 (883)
Q Consensus 456 ~ll~~~~~d~~~~evrdrA~~y~~ll~~~~ 485 (883)
.+++.+..+ .|+||||||.+||.++..++
T Consensus 551 ~~L~~~~~~-~d~evrdRA~~y~~ll~~~~ 579 (618)
T 1w63_A 551 KVVSIYGSS-IDVELQQRAVEYNALFKKYD 579 (618)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHcCcH
Confidence 999999877 59999999999999987643
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=1e-50 Score=482.16 Aligned_cols=394 Identities=85% Similarity=1.279 Sum_probs=364.2
Q ss_pred hhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHH
Q psy2915 489 ILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVR 568 (883)
Q Consensus 489 ~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~ 568 (883)
...++++|+++.++.|++++++|++++++++++++..||+||+++..+++.++|.+.+++|+++||++|+||.+|++|++
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~ 108 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVR 108 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 569 TMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 569 ~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
+||+++.+++.+.+.+.+.+++.|++|+|||+|+.|++++++.+|+.+++..|++.+.++|+|+|++|+.+|+.++.+++
T Consensus 109 ~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 109 TMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp HHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999876679999999999999999999999999999
Q ss_pred hcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 649 EASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 649 ~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
+..|+.. ++.+.+..+.++++.+.+.+||+|+++++++..++|.++++...+++.+.+++++.|++|++||+++++++.
T Consensus 189 ~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 189 ESHPNSN-LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp TSCCSCC-SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred hhCCCcc-chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 8755321 466778889999999999999999999999999999999899999999999999999999999999999986
Q ss_pred hhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhcc
Q psy2915 729 EMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLAS 808 (883)
Q Consensus 729 ~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~ 808 (883)
+..+.+++....+..+++++|++++++++|+||+||+++..++..+|+.+.+|+..|+|+.+||++||++|+++++++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 268 ELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp CSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 44433445667777888999999888899999999999999999999999999988999988899999999999999999
Q ss_pred ccchhh-------------------------------------------------hhHHHHHHHHHHHHHHhhCCCchHH
Q psy2915 809 QANIAQ-------------------------------------------------VNYVVQEAIVVIKDIFRKYPNKYET 839 (883)
Q Consensus 809 ~~N~~~-------------------------------------------------~~~~~~e~i~~i~~l~~~~p~~~~~ 839 (883)
++|++. ++++..|++..++.+++++|+.+..
T Consensus 348 ~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~ 427 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES 427 (591)
T ss_dssp SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT
T ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHH
Confidence 999874 2467788888999999999999999
Q ss_pred HHHHHHhhcccCCcHHHHHHHHHHHhcCcCccCCHHHHHHhhhC
Q psy2915 840 IISTLCENLDTLDEPEARASMIWIIGEYAERIDNADELLESFLE 883 (883)
Q Consensus 840 ~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~~~~~~~~~~~e 883 (883)
++..|++.++...+|+++++++|++|||++.+++++++++.|++
T Consensus 428 ~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~ 471 (591)
T 2vgl_B 428 IIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLE 471 (591)
T ss_dssp THHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHST
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988763
No 5
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=7e-49 Score=466.17 Aligned_cols=394 Identities=18% Similarity=0.312 Sum_probs=318.7
Q ss_pred hhhhhHHHHHhhcCC--chhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhH
Q psy2915 470 LRDRGFIYWRLLSTG--NTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMA 547 (883)
Q Consensus 470 vrdrA~~y~~ll~~~--~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~ 547 (883)
++....+....+..+ ......+++++|+++.++.|+|++++|++++++++++++..||+||+++..+.+.++|++.++
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~ 112 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI 112 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 333334555555532 233456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc--CCCChHHHhhHHHHHHHHHhhcccccccccHHHHH
Q psy2915 548 VNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL--KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 625 (883)
Q Consensus 548 ~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l--~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l 625 (883)
+|+++||++|+||.+|++||++||+++++++.+.+.+.|++++ .|++|+|||+|+.|+.++++.+|+.++.++|.+.+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l 192 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRV 192 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999766899999
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc--C-----------ChhhHHHHHHHHhccCC
Q psy2915 626 KDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE--C-----------TEWGQVFILDSLSNYSP 692 (883)
Q Consensus 626 ~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~--~-----------~~w~qi~iL~lL~~~~~ 692 (883)
.++|+|+|++|+.+|+.++.++++.+| +.+..++|..+..|.+.+.. . +||+|++++++|..|++
T Consensus 193 ~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 193 VHLLNDQHLGVVTAATSLITTLAQKNP--EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCH--HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 999999999999999999999998754 45666777777767665532 2 79999999999999998
Q ss_pred CC-hHHHHHHHHHHhHh------------hcCCCh--HHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CC
Q psy2915 693 KD-DREAQSICERITPR------------LAHANA--AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SE 756 (883)
Q Consensus 693 ~~-~~~~~~il~~l~~~------------l~~~~~--aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~ 756 (883)
.+ ++....+.+.+... +++.|+ +|+|||+++++++. +.+++... +...|..+++ ++
T Consensus 271 ~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~----~~~~L~~~L~~~~ 342 (621)
T 2vgl_A 271 PEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVR----ACNQLGQFLQHRE 342 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHH----HHHHHHHHSSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHH----HHHHHHHHhcCCC
Confidence 64 55554455544433 345565 99999999999983 44444444 4555556665 78
Q ss_pred cchHHHHHHHHHHHHhhCc--hhHhhccc-eeEEcc-CCCHHHHHHHHHHHHHhccccchhh------------hhHHHH
Q psy2915 757 PEVQYVALRNINLIVQKRP--DILKHEMK-VFFVKY-NDPIYVKLEKLDIMIRLASQANIAQ------------VNYVVQ 820 (883)
Q Consensus 757 ~niry~aL~~l~~l~~~~~--~~~~~~~~-~~~~l~-~dd~~Ir~~~l~lL~~l~~~~N~~~------------~~~~~~ 820 (883)
+|+||+||+++..++..+| +.+++|.. .+.|+. ++|.+||++||++|+.|+|++|++. ...+++
T Consensus 343 ~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~ 422 (621)
T 2vgl_A 343 TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIRE 422 (621)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999986 68899985 455787 8899999999999999999999987 234566
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHhhcc----------------------------------cCCcHHHHHHHH----H
Q psy2915 821 EAIVVIKDIFRKYPNKYETIISTLCENLD----------------------------------TLDEPEARASMI----W 862 (883)
Q Consensus 821 e~i~~i~~l~~~~p~~~~~~i~~L~~~l~----------------------------------~i~~~~~~~~~~----w 862 (883)
+++.+|..++++||....+.+..|.+.+. .+.+|+++++++ |
T Consensus 423 ~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~w 502 (621)
T 2vgl_A 423 EIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGY 502 (621)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 66667777777766655555554443321 122333444444 9
Q ss_pred HHhcCcCccCC
Q psy2915 863 IIGEYAERIDN 873 (883)
Q Consensus 863 ~lgey~~~~~~ 873 (883)
++|||++.+++
T Consensus 503 ilGEy~~~~~~ 513 (621)
T 2vgl_A 503 ILGEFGNLIAG 513 (621)
T ss_dssp HHHHHTHHHHS
T ss_pred HhcchHHHhcc
Confidence 99999998876
No 6
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.3e-46 Score=446.25 Aligned_cols=392 Identities=19% Similarity=0.266 Sum_probs=322.1
Q ss_pred hhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHH
Q psy2915 470 LRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVN 549 (883)
Q Consensus 470 vrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n 549 (883)
++....+....+..+. ....+++++|+++.++.|++++++|++++++++++++..||+||+++..+.+.++|++.+++|
T Consensus 32 i~~e~~~ir~~l~~~~-~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in 110 (618)
T 1w63_A 32 IQKECAAIRSSFREED-NTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTN 110 (618)
T ss_dssp HHHHHHHHHHHHTTTC-TTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3333444555554432 234457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh
Q psy2915 550 TFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL 629 (883)
Q Consensus 550 ~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL 629 (883)
+|+||++|+||.+|++|+++||+++++++.+.+.+.|.+++.|++|+|||+|+.|++++++.+|+.+. .|++.+.++|
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--~~~~~l~~lL 188 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--MFLPATKNLL 188 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG--GGGGGTTTST
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 7999999999
Q ss_pred cCCChhHHHHHHHHHHHHHhcCCCc-hhhHHhcHHHHHHHHHHcc-----------cCChhhHHHHHHHHhccCCCChHH
Q psy2915 630 SDSNPMVVANAVAALSEMNEASTSG-VALIEMNAQTINKLLTALN-----------ECTEWGQVFILDSLSNYSPKDDRE 697 (883)
Q Consensus 630 ~D~d~~V~~~a~~~l~~i~~~~~~~-~~~~~l~~~~~~~L~~~l~-----------~~~~w~qi~iL~lL~~~~~~~~~~ 697 (883)
.|+|++|+.+|+.++.+++..+|+. +.+..++|..+..|.+... ..+||+|+.++++|+.+++.+++.
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~ 268 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS 268 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999998754431 2334445444433333221 359999999999999999988876
Q ss_pred HHHHHHHHhHhh------cCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHH
Q psy2915 698 AQSICERITPRL------AHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLI 770 (883)
Q Consensus 698 ~~~il~~l~~~l------~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l 770 (883)
...+++.+..++ ++.+.+|++||+++++.+ +..+.+.. .+..+|..++. +++|+||+||.++..+
T Consensus 269 ~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~----~a~~~L~~~L~~~d~~vr~~aL~~L~~i 340 (618)
T 1w63_A 269 SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRV----LAINILGRFLLNNDKNIRYVALTSLLKT 340 (618)
T ss_dssp HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHH----HHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHH----HHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 665555555543 345669999999999997 34433333 34555666665 7999999999999999
Q ss_pred HhhCchhHhhcc-ceeEEccCCCHHHHHHHHHHHHHhccccchhh-----------------------------------
Q psy2915 771 VQKRPDILKHEM-KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ----------------------------------- 814 (883)
Q Consensus 771 ~~~~~~~~~~~~-~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~----------------------------------- 814 (883)
+..+|+.+.+|. .++.|++++|.+||++|+++|+.|++++|++.
T Consensus 341 ~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 341 VQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp HHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH
Confidence 999999999998 67889999999999999999999999999865
Q ss_pred --------------hhHHHHHHHHHHHHHHhhCCCchHHHHHHHHhhccc-C-CcHHHHHHHHHHHhcCcCccCC
Q psy2915 815 --------------VNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDT-L-DEPEARASMIWIIGEYAERIDN 873 (883)
Q Consensus 815 --------------~~~~~~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~~-i-~~~~~~~~~~w~lgey~~~~~~ 873 (883)
++++..|++..++++++++|+.+..++..|++.+.. . .++.+ .+++|++|||++.+++
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~ 494 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVS 494 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcc
Confidence 123445566777888888888888888888888874 3 35555 4689999999987643
No 7
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=3.1e-42 Score=373.59 Aligned_cols=305 Identities=15% Similarity=0.238 Sum_probs=214.5
Q ss_pred hhhhhhhhhHHHHHhhccCCC-----cccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCH
Q psy2915 486 TFYILLHLTRLVIASMTVGKD-----VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNP 560 (883)
Q Consensus 486 ~~~~~~~~l~kli~~~~~g~~-----~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~ 560 (883)
...++++.++|+++.++.|++ ++++|++++++++++|...||++|+|+..+.+..+|. .+++|+|+||++|+||
T Consensus 40 ~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~-iLv~Nsl~kDl~~~N~ 118 (355)
T 3tjz_B 40 NPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV-IIVTSSLTKDMTGKED 118 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG-GGGHHHHHHHHHSSCH
T ss_pred cHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHhhcCCCcH
Confidence 344667899999999999997 6789999999999999999999999999999986565 6999999999999999
Q ss_pred HHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHH
Q psy2915 561 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 640 (883)
Q Consensus 561 ~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a 640 (883)
++|++|||+||++.++++.+.+.+.+++++.|++|||||+|+.|.+++++..|+.+. .|++.+.+++.|+||+|+.+|
T Consensus 119 ~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~~l~~ll~d~n~~V~~~A 196 (355)
T 3tjz_B 119 SYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK--RWVNEAQEAASSDNIMVQYHA 196 (355)
T ss_dssp HHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--TTHHHHHHHTTCSSHHHHHHH
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHhcCCCccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999984 799999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccC---ChhhHHHHHHHHhccCCCC-hHHHHHHHHHHhHhhcCCChHH
Q psy2915 641 VAALSEMNEASTSGVALIEMNAQTINKLLTALNEC---TEWGQVFILDSLSNYSPKD-DREAQSICERITPRLAHANAAV 716 (883)
Q Consensus 641 ~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~---~~w~qi~iL~lL~~~~~~~-~~~~~~il~~l~~~l~~~~~aV 716 (883)
+.++.++.+.+ +..+.+++..+... +||+|+.++|++..+.+.+ +++...+++.+.++++|.|++|
T Consensus 197 l~lL~ei~~~d----------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aV 266 (355)
T 3tjz_B 197 LGLLYHVRKND----------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMV 266 (355)
T ss_dssp HHHHHHHHTTC----------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHH
T ss_pred HHHHHHHHhhc----------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHH
Confidence 99999999753 24566677666553 7999999999999999998 6778899999999999999999
Q ss_pred HHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhcc-ceeEEccCCCHH
Q psy2915 717 VLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEM-KVFFVKYNDPIY 794 (883)
Q Consensus 717 ~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~-~~~~~l~~dd~~ 794 (883)
+|||+++|+.+.+ . + ......++.++..+++ ++||+||+||+.+.++++.+|+.++.|. ++.-|+.|+|.+
T Consensus 267 vyEa~k~I~~l~~-~--~----~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~s 339 (355)
T 3tjz_B 267 VYEAASAIVNLPG-C--S----AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRS 339 (355)
T ss_dssp HHHHHHHHTC------------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred HHHHHHHHHhccC-C--C----HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHh
Confidence 9999999999842 1 1 1223345666666664 7999999999999999999999999997 666688888999
Q ss_pred HHHHHHHHHHHhcccc
Q psy2915 795 VKLEKLDIMIRLASQA 810 (883)
Q Consensus 795 Ir~~~l~lL~~l~~~~ 810 (883)
|+..|+..|++.+++.
T Consensus 340 I~t~Aittllktg~e~ 355 (355)
T 3tjz_B 340 IATLAITTLLKTGSEG 355 (355)
T ss_dssp ----------------
T ss_pred HHHHHHHHhhhccCCC
Confidence 9999999999998863
No 8
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=7.7e-43 Score=378.37 Aligned_cols=306 Identities=15% Similarity=0.209 Sum_probs=220.8
Q ss_pred ccccccCcCcHHHHHHHhcCC--ChHHHHHHHHHHHHHHhCCCC-----cccchHHHHhhccCCChhHHHHHHHHHHHhh
Q psy2915 5 KYFTTTKKGEIFELKGELNSD--KKEKKREAVKKVIASMTVGKD-----VSALFPDVVNCMQTDNLELKKLVYLYLMNYA 77 (883)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~l~kli~~~~~G~~-----~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~ 77 (883)
.|+...|.+.++|.| .|+++ ++.+++++++|++|+|++|++ ++++|++|+++++++|+++|||||+|++.|+
T Consensus 18 p~~~~~k~~v~qe~r-~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~ 96 (355)
T 3tjz_B 18 PFQHLEKSAVLQEAR-VFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMS 96 (355)
T ss_dssp --CCCCHHHHHHHGG-GTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 366677778899965 78766 677778899999999999998 7899999999999999999999999999999
Q ss_pred ccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHH
Q psy2915 78 KSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLR 157 (883)
Q Consensus 78 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~ 157 (883)
+..+|+ +|++|+ ++||++|+||++|++|||+||+|+++++++++.+.++
T Consensus 97 ~~~~e~-iLv~Ns------------------------------l~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk 145 (355)
T 3tjz_B 97 CIAEDV-IIVTSS------------------------------LTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMK 145 (355)
T ss_dssp TTSSCG-GGGHHH------------------------------HHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCHHHH-HHHHHH------------------------------HHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 996665 799999 9999999999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcc-ccccccccC---
Q psy2915 158 KCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQ-RNLSSRKKQ--- 233 (883)
Q Consensus 158 ~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~-~~l~~~~~~--- 233 (883)
+++.|++|||||+|++|..|+++.+||.++ .|++.+.+++.|+||+|+.+|+.++.++.+..+.. .+++..+..
T Consensus 146 ~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l 223 (355)
T 3tjz_B 146 QAIVDKVPSVSSSALVSSLHLLKCSFDVVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGL 223 (355)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTTTCHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999994 59999999999999999999999999999765422 233333222
Q ss_pred -CCCcHHHHHh-hccccccC--------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhh
Q psy2915 234 -ICWNLPYLMN-LSVIYPAW--------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL 295 (883)
Q Consensus 234 -~~w~q~~~l~-l~~~~~~~--------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL 295 (883)
.+|+|+.++| +..+.+.+ .+++.|++| +|+++++.+.. .+ ......++.+|..+|
T Consensus 224 ~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~------~~~~~~a~~~L~~fL 296 (355)
T 3tjz_B 224 KSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CS------AKELAPAVSVLQLFC 296 (355)
T ss_dssp SCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------------CCCTHHHHH
T ss_pred cChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CC------HHHHHHHHHHHHHHH
Confidence 4799999999 88887654 468889998 99999986533 11 224567788999999
Q ss_pred c-CChhHHHHHHHHHHHHHhhCchhHHhc-ccceeeccCCCHHHHHHHHHHHHHhcCh
Q psy2915 296 S-SEPEVQYVALRNINLIVQKRPDILKHE-MKVFFVKYNDPIYVKLEKLDIMIRLASQ 351 (883)
Q Consensus 296 ~-~~~~vr~~aL~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~Ir~~aL~iL~~l~~~ 351 (883)
+ +++|+||+||+.+.+++..+|+.+..| .++..|+.|++.+|+..|+.+|.+.++|
T Consensus 297 ss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 297 SSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp HSSSSSSHHHHHHCC-------------------------------------------
T ss_pred cCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 5 678999999999999999999999988 6888899999999999999999998775
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.93 E-value=3.1e-23 Score=245.99 Aligned_cols=552 Identities=14% Similarity=0.137 Sum_probs=351.2
Q ss_pred ccchhhhchhcCCCCHHHHHHHHHHhccC----CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhC--cccccc
Q psy2915 115 CSSVGVFVKDCEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQLVED 188 (883)
Q Consensus 115 ~~~~~~l~kDL~~~n~~vr~lALr~L~~i----~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~--p~~~~~ 188 (883)
+..+..+...++|+++.+|..|.+.++.+ +.....+.+.+.+.... |+++.||+.|+.+++++.... ++..
T Consensus 9 ~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~-- 85 (588)
T 1b3u_A 9 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYV-- 85 (588)
T ss_dssp SHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGG--
T ss_pred cCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHH--
Confidence 34456689999999999999999999874 33445566777777766 788999999999999876542 2222
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHH
Q psy2915 189 QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMK 268 (883)
Q Consensus 189 ~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~ 268 (883)
..+++.|..++.|+++.|+..|..+|..+....+...
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~------------------------------------------- 122 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD------------------------------------------- 122 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH-------------------------------------------
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH-------------------------------------------
Confidence 3477888888899999999999999999886543211
Q ss_pred HhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHHhcc-cce-eeccCCCHHHHHHHHHHH
Q psy2915 269 LMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEM-KVF-FVKYNDPIYVKLEKLDIM 345 (883)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~~~-~~~-~~l~~~~~~Ir~~aL~iL 345 (883)
....+.+.+..+.. +++.+|..|...+..++...+....+.+ ..+ ..+.|++..||..+++.|
T Consensus 123 --------------~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l 188 (588)
T 1b3u_A 123 --------------LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 188 (588)
T ss_dssp --------------HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00011111122221 2234444444444444433332221111 111 123455555555555555
Q ss_pred HHhcC----hhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHh
Q psy2915 346 IRLAS----QANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFL 421 (883)
Q Consensus 346 ~~l~~----~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~ 421 (883)
..++. +.....+++.|...+.+.++.+|..++.+++.++...++. ...+ .++..+.
T Consensus 189 ~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~------------------~~~~~l~ 248 (588)
T 1b3u_A 189 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEA------------------LVMPTLR 248 (588)
T ss_dssp HHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHH------------------HTHHHHH
T ss_pred HHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHH------------------HHHHHHH
Confidence 55542 1223456677777777888888888888888888765532 1111 1222233
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhcCCch--HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhh-hhhhhhHHHH
Q psy2915 422 EGFHDENTQVQLQLLTAIVKLFLKRPTD--TQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFY-ILLHLTRLVI 498 (883)
Q Consensus 422 ~~~~~~~~~vr~~~L~al~Kl~~~~~~~--~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~-~~~~~l~kli 498 (883)
....++++.||..+..+++.+....+++ ...+++.+++.+. | .+++||..|...+.-+....... ....
T Consensus 249 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~------ 320 (588)
T 1b3u_A 249 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK-D-CEAEVRAAASHKVKEFCENLSADCRENV------ 320 (588)
T ss_dssp HHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHT-C-SSHHHHHHHHHHHHHHHHTSCTTTHHHH------
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhC-C-CcHHHHHHHHHHHHHHHHHhChhhhhhH------
Confidence 3335677888888888888876543221 2344555555544 4 37889888775444332211000 0000
Q ss_pred HhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCc--hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCC--
Q psy2915 499 ASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHP--DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIR-- 574 (883)
Q Consensus 499 ~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~--~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~-- 574 (883)
......+.+.+++.+.++.+|+.+..+++.+...-. .....+.+.+.+-++|+++.||..|+.+++.+.
T Consensus 321 -------~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 321 -------IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp -------HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred -------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 012234445567788888888887777666643211 111235567777888999999999999988653
Q ss_pred --hhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 575 --VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 575 --~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.....+.++|.+.+.+.|++|.||..++.++..+.+..+...-.+.+++.+..++.|+++.||.+|+.++..+....+
T Consensus 394 ~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 394 IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Confidence 344567889999999999999999999999999987544333335688999999999999999999999999986422
Q ss_pred CchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCCh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhh
Q psy2915 653 SGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDD--REAQSICERITPRLAHANAAVVLSAVKVLMKLMEM 730 (883)
Q Consensus 653 ~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~--~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~ 730 (883)
++.. .+..+..+.+...+.+++.+...+.+++.+...-. .-...+++.+.+.+++.++.|+..+++++..+...
T Consensus 474 -~~~~---~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 474 -KEWA---HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp -HHHH---HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred -chhH---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 1111 22333344454556677777777777776653211 12236677888888888999999999999988765
Q ss_pred CCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHH
Q psy2915 731 LPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLI 770 (883)
Q Consensus 731 ~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l 770 (883)
++. ++. ...+.+.+..+++ +++++|..+...+..+
T Consensus 550 ~~~--~~~---~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 550 LDN--STL---QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp SCH--HHH---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hch--hhh---HHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 543 111 1245555555554 5778888888887654
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.91 E-value=5.7e-21 Score=226.47 Aligned_cols=501 Identities=14% Similarity=0.111 Sum_probs=351.4
Q ss_pred cCCCCHHHHHHHHHHhccCC----chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhc
Q psy2915 125 CEDSNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS 200 (883)
Q Consensus 125 L~~~n~~vr~lALr~L~~i~----~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~ 200 (883)
..|+++.+|..|.+.|+.+. .++..+.+.+.+..++.|+++.||++|+.++.++....|.....+.+.+.+.++..
T Consensus 57 ~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~ 136 (588)
T 1b3u_A 57 TIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG 136 (588)
T ss_dssp TCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT
T ss_pred hcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc
Confidence 34788999999999999875 35567778888888889999999999999999999866543212346677777888
Q ss_pred CCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhH
Q psy2915 201 DSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFV 280 (883)
Q Consensus 201 D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~ 280 (883)
++++.++.+|+.++..+...-+.
T Consensus 137 ~~~~~~R~~a~~~l~~~~~~~~~--------------------------------------------------------- 159 (588)
T 1b3u_A 137 GDWFTSRTSACGLFSVCYPRVSS--------------------------------------------------------- 159 (588)
T ss_dssp CSSHHHHHHHGGGHHHHTTTSCH---------------------------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHHHhcCH---------------------------------------------------------
Confidence 88999999988887776542110
Q ss_pred HHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCch-hHHhc-ccce-eeccCCCHHHHHHHHHHHHHhcCh----h
Q psy2915 281 STLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD-ILKHE-MKVF-FVKYNDPIYVKLEKLDIMIRLASQ----A 352 (883)
Q Consensus 281 ~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~-~~~~~-~~~~-~~l~~~~~~Ir~~aL~iL~~l~~~----~ 352 (883)
.....+.+.+..++. +++++|..|+.++..++...+. ...+. +..+ .++.|++..+|..|++.|..++.. .
T Consensus 160 -~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 238 (588)
T 1b3u_A 160 -AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238 (588)
T ss_dssp -HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 012334455556664 5678999999999999887653 22222 2322 256788899999999998887743 2
Q ss_pred hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHH
Q psy2915 353 NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQ 432 (883)
Q Consensus 353 nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr 432 (883)
..+.+++.+.....+.++.+|..++.++|.++...++.. +. ++++..+.+.+.++++.||
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~------------------~~l~~~l~~~l~d~~~~vr 298 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TK------------------TDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HH------------------HTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--ch------------------hHHHHHHHHHhCCCcHHHH
Confidence 335577777788888999999999999999987553311 10 1233444444567889999
Q ss_pred HHHHHHHHHHhhcCCch------HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCC
Q psy2915 433 LQLLTAIVKLFLKRPTD------TQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKD 506 (883)
Q Consensus 433 ~~~L~al~Kl~~~~~~~------~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~ 506 (883)
..+..+++.+....+.+ ...+++.+.... .| .++.||..+...+.-+... + |.+
T Consensus 299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d-~~~~vR~~a~~~l~~l~~~----------------~--~~~ 358 (588)
T 1b3u_A 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SD-ANQHVKSALASVIMGLSPI----------------L--GKD 358 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TC-SCHHHHHHHHTTGGGGHHH----------------H--CHH
T ss_pred HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHH----------------h--hHh
Confidence 99999999887665433 233444444443 44 3789998776443332211 0 110
Q ss_pred --cccchHHHHHhhcccchhHHHHHHHHHHhhccCCc--hhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Chhhh
Q psy2915 507 --VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHP--DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RVDKI 578 (883)
Q Consensus 507 --~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~--~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~~~~ 578 (883)
.....+.+..++.+.+..+|..+..+++.+...-. .....+.+.+.+-++++++.+|..|+.+++.+ +...+
T Consensus 359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 438 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF 438 (588)
T ss_dssp HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH
Confidence 11233444566777777888777766665543221 12234667777888899999999999999875 33334
Q ss_pred hHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhH
Q psy2915 579 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI 658 (883)
Q Consensus 579 ~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~ 658 (883)
.+.++|.+.+.+.|+++.||..|+.+++.+....+.......+++.+..++.|+++.+|.+++.++..++..-+ .+
T Consensus 439 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~--- 514 (588)
T 1b3u_A 439 DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QD--- 514 (588)
T ss_dssp CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HH---
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HH---
Confidence 56788999999999999999999999999988654332224577888888899999999999999999985421 11
Q ss_pred HhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCC-hHH-HHHHHHHHhHhhcCCChHHHHHHHHHHHHh
Q psy2915 659 EMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKD-DRE-AQSICERITPRLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 659 ~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~-~~~-~~~il~~l~~~l~~~~~aV~~eai~~i~~~ 727 (883)
...+..+..+.+.+.+.++..+..+++.|+.+...- +.. ...+++.+..++.+.+..|+..|..++..+
T Consensus 515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 123345556777788899999999999888876432 211 236677787888889999999999888765
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=6.8e-19 Score=218.38 Aligned_cols=692 Identities=16% Similarity=0.138 Sum_probs=410.0
Q ss_pred cHHHHHHHh---cCCChHHHHHHHHHHHHHHhCCC-CcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcc
Q psy2915 14 EIFELKGEL---NSDKKEKKREAVKKVIASMTVGK-DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFS 89 (883)
Q Consensus 14 ~~~~~~~~l---~~~~~~~~~~~l~kli~~~~~G~-~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n 89 (883)
.++++.+.| .+++...|+.+-..+-.. ... +...+...++..+.+.+..+|.++-+++.+....+
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~--~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~--------- 79 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQL--NQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH--------- 79 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS---------
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc---------
Confidence 345555555 477888888888777533 221 11123344454446788899999999998864321
Q ss_pred cccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCc---hhhhHHHHHHHHhhcCCCChh
Q psy2915 90 TFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRV---DKITEYLCEPLRKCLKDEDPY 166 (883)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~---~~~~~~l~~~v~~~l~d~~~~ 166 (883)
+.++++.....+.-. +.+-+.++++.+|..|..+++.+.. +.-.+.+.+.+.+++.++++.
T Consensus 80 ---w~~~~~~~~~~ik~~-------------ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~ 143 (852)
T 4fdd_A 80 ---FQNFPNGVTDFIKSE-------------CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYN 143 (852)
T ss_dssp ---GGGCCHHHHHHHHHH-------------HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHH
T ss_pred ---cCCCCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHH
Confidence 111121222222222 5555778888888877777777643 334556677777778888888
Q ss_pred HHHHHHHHHHHHhhhCcccccc-------ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHH
Q psy2915 167 VRKTAAVCVAKLYDINAQLVED-------QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLP 239 (883)
Q Consensus 167 VRk~A~~al~kl~~~~p~~~~~-------~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~ 239 (883)
+|..|+.++++++...|+.... ..+++.+.+++.|+++.|+.+|+.++..+....+..
T Consensus 144 ~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~--------------- 208 (852)
T 4fdd_A 144 TCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA--------------- 208 (852)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH---------------
T ss_pred HHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH---------------
Confidence 8888888888887766654321 224455566667888888888888777655322110
Q ss_pred HHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCch
Q psy2915 240 YLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD 318 (883)
Q Consensus 240 ~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~ 318 (883)
....+..+++.+..+++ +++++|..|+.++..++..+|+
T Consensus 209 ----------------------------------------~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 209 ----------------------------------------LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp ----------------------------------------HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 00012334555666664 4678999999999999999999
Q ss_pred hHHhcccc-----eeeccCCCHHHHHHHHHHHHHhcChh--------hHHHHHHHHHHhh-----------hh-------
Q psy2915 319 ILKHEMKV-----FFVKYNDPIYVKLEKLDIMIRLASQA--------NIAQVLSELKEYA-----------TE------- 367 (883)
Q Consensus 319 ~~~~~~~~-----~~~l~~~~~~Ir~~aL~iL~~l~~~~--------nv~~Il~eL~~~~-----------~~------- 367 (883)
.+.+|+.. +.++.+++..+|..|++.+..++... .+..+++.|...+ .+
T Consensus 249 ~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 99888532 22567888899999999999988643 2234555554443 11
Q ss_pred ----cCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q psy2915 368 ----VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLF 443 (883)
Q Consensus 368 ----~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~ 443 (883)
.+..+|..+..+++.++...++. +++ .++..+.+.+.+.++.+|..++.+++.+.
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~------------------~l~~~l~~~l~~~~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRDE---LLP------------------HILPLLKELLFHHEWVVKESGILVLGAIA 387 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGGG---GHH------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHHHhccHH---HHH------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11224555566666555443321 111 12222222333445666666666666553
Q ss_pred hcCCc----hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhc
Q psy2915 444 LKRPT----DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQ 519 (883)
Q Consensus 444 ~~~~~----~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~ 519 (883)
...+. ...++++.+ ++.+.
T Consensus 388 ~~~~~~~~~~l~~~l~~l---------------------------------------------------------~~~l~ 410 (852)
T 4fdd_A 388 EGCMQGMIPYLPELIPHL---------------------------------------------------------IQCLS 410 (852)
T ss_dssp TTTHHHHGGGHHHHHHHH---------------------------------------------------------HHHTT
T ss_pred hcchHHHHHHHHHHHHHH---------------------------------------------------------HHHcC
Confidence 32211 122333333 33444
Q ss_pred ccchhHHHHHHHHHHhhccC-----CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHh
Q psy2915 520 TDNLELKKLVYLYLMNYAKS-----HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV------DKITEYLCEPLRK 588 (883)
Q Consensus 520 s~~~~~kr~~yl~~~~~~~~-----~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~ 588 (883)
+++..+|..+..+++.+... ......-+++.+.+.++++++.+|..|+.+++++.. ....+.+++.+.+
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence 44444444444444433221 112223456677777888899999999999887632 2245667777788
Q ss_pred hcCCCChHHHhhHHHHHHHHHhhcccccccc----cHHHHHH---HhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhc
Q psy2915 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ----GFLDQLK---DLLSDSNPMVVANAVAALSEMNEASTSGVALIEMN 661 (883)
Q Consensus 589 ~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~----~~~~~l~---~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~ 661 (883)
++++.+......++.+++.+....+..+..+ .+++.+. ..+.|.++.++ .++.++..++..-. ..+.+..
T Consensus 491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g--~~~~~~~ 567 (852)
T 4fdd_A 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ--SGFLPYC 567 (852)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG--GGGHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh--HhHHHHH
Confidence 8877777777778888888876544333222 2333333 23457788875 77888888776421 2344455
Q ss_pred HHHHHHHHHHccc-----------------CChhhHHHHHHHHhccCCC---ChHHH---HHHHHHHhHhhcCCChHHHH
Q psy2915 662 AQTINKLLTALNE-----------------CTEWGQVFILDSLSNYSPK---DDREA---QSICERITPRLAHANAAVVL 718 (883)
Q Consensus 662 ~~~~~~L~~~l~~-----------------~~~w~qi~iL~lL~~~~~~---~~~~~---~~il~~l~~~l~~~~~aV~~ 718 (883)
+..+..+++.+.+ .+.-.+..++++++.+... +-... ..+++.+..++++.++.|+-
T Consensus 568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~ 647 (852)
T 4fdd_A 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ 647 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHH
Confidence 5555554444321 1233455556666554321 11111 25678888888999999999
Q ss_pred HHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhcc----ceeE-EccCC-
Q psy2915 719 SAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEM----KVFF-VKYND- 791 (883)
Q Consensus 719 eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~----~~~~-~l~~d- 791 (883)
++..++..++...+.. + ...+..+.+.+...++ .++++|-.+...+..++...++-+.+++ ..+. .+.++
T Consensus 648 ~a~~~l~~l~~~~~~~--~-~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 648 SSFALLGDLTKACFQH--V-KPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN 724 (852)
T ss_dssp HHHHHHHHHHHHCGGG--T-GGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhhHH--H-HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC
Confidence 9999999987655532 2 2234446666666665 4678999998888888776554455543 2222 23333
Q ss_pred -CHHHHHHHHHHHHHhcccc--chhh-----------------hhHHHHHHHHHHHHHHhhCCCchHHHHHHHHhhcccC
Q psy2915 792 -PIYVKLEKLDIMIRLASQA--NIAQ-----------------VNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDTL 851 (883)
Q Consensus 792 -d~~Ir~~~l~lL~~l~~~~--N~~~-----------------~~~~~~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~~i 851 (883)
+..++..+...+.+|+... .+.. .+.....+...++.+++.+|+.....+.+.++..-..
T Consensus 725 ~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~ 804 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW 804 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhc
Confidence 6789999999999998762 1211 1223445666889999999986555555555544322
Q ss_pred C--cHHHHHHHHHHHhcCcCcc
Q psy2915 852 D--EPEARASMIWIIGEYAERI 871 (883)
Q Consensus 852 ~--~~~~~~~~~w~lgey~~~~ 871 (883)
. .++.+.++.-++-.|.+.+
T Consensus 805 ~~~~~~l~~~~~~~l~~~~~~~ 826 (852)
T 4fdd_A 805 INPKDDLRDMFCKILHGFKNQV 826 (852)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhC
Confidence 2 4667766665554444333
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=3.4e-18 Score=212.07 Aligned_cols=642 Identities=15% Similarity=0.163 Sum_probs=403.9
Q ss_pred hhhhchhcCCCCHHHHHHHHHHhccCCc-hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccccc---ccHHH
Q psy2915 118 VGVFVKDCEDSNPLIRALAVRTMGCIRV-DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED---QGFLD 193 (883)
Q Consensus 118 ~~~l~kDL~~~n~~vr~lALr~L~~i~~-~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~---~~~~~ 193 (883)
+-++.+...|+|+.+|..|-..|..+.. |+....+...+ ..+.+.++.||..|+..+-+....+-..+++ ....+
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il-~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~ 93 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVL-TKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS 93 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 3346667789999999999999988764 66666655443 3346789999999999998877543222221 22334
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcC
Q psy2915 194 QLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEML 273 (883)
Q Consensus 194 ~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~ 273 (883)
.+.+.|.|+++.|+..+..++.++....+... |
T Consensus 94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~----------w------------------------------------- 126 (852)
T 4fdd_A 94 ECLNNIGDSSPLIRATVGILITTIASKGELQN----------W------------------------------------- 126 (852)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT----------C-------------------------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc----------c-------------------------------------
Confidence 55556779999999999999999986542111 1
Q ss_pred CCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHHh---------ccc-ceeeccCCCHHHHHHHH
Q psy2915 274 PGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKH---------EMK-VFFVKYNDPIYVKLEKL 342 (883)
Q Consensus 274 ~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~---------~~~-~~~~l~~~~~~Ir~~aL 342 (883)
+ .+.+.|...++ .++++|..|+..+..++...|..+.. .+. .+.++.+++..||..|+
T Consensus 127 p-----------~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~ 195 (852)
T 4fdd_A 127 P-----------DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAV 195 (852)
T ss_dssp T-----------THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHH
T ss_pred H-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 13344445554 45688999999999998887766432 122 23367788899999999
Q ss_pred HHHHHhcCh------hhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHH
Q psy2915 343 DIMIRLASQ------ANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADEL 416 (883)
Q Consensus 343 ~iL~~l~~~------~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~i 416 (883)
..|..++.. ..+..+++.|...+.+.++++|..++.+++.++..+|.....+++ .+
T Consensus 196 ~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~------------------~l 257 (852)
T 4fdd_A 196 ACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH------------------NI 257 (852)
T ss_dssp HHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH------------------HH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH------------------HH
Confidence 999887753 234578888888888999999999999999999877654222222 23
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhcC------CchHHHHHHHHHHHhh----------cC--C--------CChhh
Q psy2915 417 LESFLEGFHDENTQVQLQLLTAIVKLFLKR------PTDTQELVQQVLSLAT----------QD--S--------DNPDL 470 (883)
Q Consensus 417 l~~l~~~~~~~~~~vr~~~L~al~Kl~~~~------~~~~~~~l~~ll~~~~----------~d--~--------~~~ev 470 (883)
+..+.+.+.+.++.||..++..+..+.... ++....+++.+++... .| . .++.+
T Consensus 258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v 337 (852)
T 4fdd_A 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence 344444455677888888877766654221 2234456666665542 11 0 01223
Q ss_pred hhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCc-ccchHHHHHhhcccchhHHHHHHHHHHhhccCCch----hhH
Q psy2915 471 RDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDV-SALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD----MAI 545 (883)
Q Consensus 471 rdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~-~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~----~~~ 545 (883)
|..|.. ++..+.... |.++ ...+..+.+.+.++++..|..+..+++.+.+..++ ...
T Consensus 338 r~~a~~----------------~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~ 399 (852)
T 4fdd_A 338 RKCSAA----------------ALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP 399 (852)
T ss_dssp HHHHHH----------------HHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH
T ss_pred HHHHHH----------------HHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 433332 222222221 2222 22344455678889999999999999998765433 234
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHhcCCCh-------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccc
Q psy2915 546 MAVNTFVKDCEDSNPLIRALAVRTMGCIRV-------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED 618 (883)
Q Consensus 546 l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~-------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~ 618 (883)
-+++.+.+.++|+++.||..|..++|++.. ....+.+++.+.+.+.|+++.||.+|+.++..+.+..+..+..
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh
Confidence 467888899999999999999999998754 2356678888999999999999999999999998765443321
Q ss_pred --ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC---CchhhHH-hcHHHHHHHHHHcccCChhhHHHHHHHHhccC-
Q psy2915 619 --QGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST---SGVALIE-MNAQTINKLLTALNECTEWGQVFILDSLSNYS- 691 (883)
Q Consensus 619 --~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~---~~~~~~~-l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~- 691 (883)
+.+++.+..++++.+......++.++..+..... ....+++ +.|..+ ...+.+.+.++-. ..+++.+..+.
T Consensus 480 ~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~-~~~~~l~d~~~~~-~~~~~~l~~i~~ 557 (852)
T 4fdd_A 480 YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI-QKWNMLKDEDKDL-FPLLECLSSVAT 557 (852)
T ss_dssp GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHH-HHHHHSCTTCTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHH-HHHHhcccccHHH-HHHHHHHHHHHH
Confidence 3455666667776666665555566665553211 1111222 222222 2223343333322 23444444432
Q ss_pred ---CCChHHHHHHHHHHhHhhc-----------------CCChHHHHHHHHHHHHhhhhCCCChhhHHHHH--HHhhhHH
Q psy2915 692 ---PKDDREAQSICERITPRLA-----------------HANAAVVLSAVKVLMKLMEMLPGEGDFVSTLT--KKLAPPL 749 (883)
Q Consensus 692 ---~~~~~~~~~il~~l~~~l~-----------------~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~--~~~~~~L 749 (883)
..-......+++.+.+.++ .....++..++.++..+...+++ ++ ...+ ..+.+.+
T Consensus 558 ~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~-~~~~~~~~~~~~l 634 (852)
T 4fdd_A 558 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NI-EQLVARSNILTLM 634 (852)
T ss_dssp HHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GG-HHHHHTCCHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH--hH-HHHhcCCcHHHHH
Confidence 1111112223332222221 11345677777777777655553 22 2222 3455656
Q ss_pred HHhcc-CCcchHHHHHHHHHHHHhhCchhHhhcccee-----EEccCCCHHHHHHHHHHHHHhccccc--hhh-------
Q psy2915 750 VTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVF-----FVKYNDPIYVKLEKLDIMIRLASQAN--IAQ------- 814 (883)
Q Consensus 750 ~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~~-----~~l~~dd~~Ir~~~l~lL~~l~~~~N--~~~------- 814 (883)
..++. .++++|..+...+..++...+.-+.+|+..+ ..+.+++..+|..++..+..++...+ ...
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~ 714 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLH 714 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 66565 4688999999999999988877777664322 23555688999999999888876543 222
Q ss_pred -----------hhHHHHHHHHHHHHHHhhCCCc----hHHHHHHHHhhcccCCcHHHHHH
Q psy2915 815 -----------VNYVVQEAIVVIKDIFRKYPNK----YETIISTLCENLDTLDEPEARAS 859 (883)
Q Consensus 815 -----------~~~~~~e~i~~i~~l~~~~p~~----~~~~i~~L~~~l~~i~~~~~~~~ 859 (883)
...+...++..+..+..++|+. ...++...+..+..+.+.+-|..
T Consensus 715 ~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~ 774 (852)
T 4fdd_A 715 QLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 774 (852)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHH
Confidence 1123444556889999998773 35677777788877665554443
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.86 E-value=4.3e-17 Score=202.29 Aligned_cols=640 Identities=13% Similarity=0.118 Sum_probs=393.5
Q ss_pred hhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhC-cc-ccccccHHHHHHHHhcCC-ChhHHHHHHHHHHhccccCCc
Q psy2915 147 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN-AQ-LVEDQGFLDQLKDLLSDS-NPMVVANAVAAILLLPRKSYW 223 (883)
Q Consensus 147 ~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~-p~-~~~~~~~~~~L~~lL~D~-d~~V~~~a~~~L~ei~~~~~~ 223 (883)
+..+.+...+.+.+.++++.||++++.++..+.... |. .+ +++++.|.+.+.++ |+.++..|+.++..+++.-+.
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~ 168 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADP 168 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccccc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh
Confidence 344556667778889999999999999999998764 63 45 45788888888888 999999999999999864321
Q ss_pred cccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcC---Chh
Q psy2915 224 QRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS---EPE 300 (883)
Q Consensus 224 ~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~ 300 (883)
... + +. . ....+.+.+...+.+ +++
T Consensus 169 ~~~---------------------------------~------------~~---~----~~~~ll~~l~~~l~~~~~~~~ 196 (861)
T 2bpt_A 169 QSQ---------------------------------A------------LV---S----SSNNILIAIVQGAQSTETSKA 196 (861)
T ss_dssp TSS---------------------------------T------------TG---G----GHHHHHHHHHHHHSTTCCCHH
T ss_pred hhh---------------------------------H------------HH---H----HHHHHHHHHHHhhcCCCCCHH
Confidence 100 0 00 0 122333444444432 456
Q ss_pred HHHHHHHHHHHHHhhCchhHH-----hc-ccc-eeeccCCCHHHHHHHHHHHHHhcCh------hhHH-HHHHHHHHhhh
Q psy2915 301 VQYVALRNINLIVQKRPDILK-----HE-MKV-FFVKYNDPIYVKLEKLDIMIRLASQ------ANIA-QVLSELKEYAT 366 (883)
Q Consensus 301 vr~~aL~~l~~l~~~~~~~~~-----~~-~~~-~~~l~~~~~~Ir~~aL~iL~~l~~~------~nv~-~Il~eL~~~~~ 366 (883)
+|..|++++..++...+..+. ++ +.. ...+.+++..+|..+++.|..++.. ..+. .+++-+.....
T Consensus 197 vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~ 276 (861)
T 2bpt_A 197 VRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK 276 (861)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777777766443221111 11 111 1245667778888888888777642 2233 45555555667
Q ss_pred hcCHHHHHHHHHHHHHHHhhchhhHHHHHHH------HHHHHHhHhhhhhCCHHHHHHHHhhhhc-------CCCHHHHH
Q psy2915 367 EVDVDFVRKAVRAIGRCAIKVEQSAERCVST------LLDLIQTKYAERIDNADELLESFLEGFH-------DENTQVQL 433 (883)
Q Consensus 367 ~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~------Ll~lL~~~~~~~i~~~~~il~~l~~~~~-------~~~~~vr~ 433 (883)
+.++++|..++..++.++...+......-+. .-..+. +....++..+.+.+. ++.+.+|.
T Consensus 277 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~il~~ll~~l~~~~~d~~d~~~~~r~ 349 (861)
T 2bpt_A 277 SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL-------SSIKDVVPNLLNLLTRQNEDPEDDDWNVSM 349 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH-------HHHHHHHHHHHHHTTCCCCC-CCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH-------HHHHHHHHHHHHHHHhcccccccccCcHHH
Confidence 7788899998888888775432100000000 000000 000112222222221 23457888
Q ss_pred HHHHHHHHHhhcCCch-HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchH
Q psy2915 434 QLLTAIVKLFLKRPTD-TQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFP 512 (883)
Q Consensus 434 ~~L~al~Kl~~~~~~~-~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~ 512 (883)
.+..++..+....+.. ...+++.+.+... + .++.+|+.|...+..+..+.....+...+ ...+.
T Consensus 350 ~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~-~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-------------~~il~ 414 (861)
T 2bpt_A 350 SAGACLQLFAQNCGNHILEPVLEFVEQNIT-A-DNWRNREAAVMAFGSIMDGPDKVQRTYYV-------------HQALP 414 (861)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHTT-C-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHHccHhHHHHHHHHHHHHcC-C-CChhHHHHHHHHHHHHHcCCCHHHHHHHH-------------HHHHH
Confidence 8888887776544433 3344444444443 4 37999999887777665442211111111 12344
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhccC------CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh----------h
Q psy2915 513 DVVNCMQTDNLELKKLVYLYLMNYAKS------HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV----------D 576 (883)
Q Consensus 513 ~vi~ll~s~~~~~kr~~yl~~~~~~~~------~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~----------~ 576 (883)
.+++.+.+++..+|..+..+++.+... ......-+++.+.+-++++ +.+|..|..+++.+.. .
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~ 493 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY 493 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH
Confidence 556677778888888877777766432 1334455677788888776 8999998888875522 1
Q ss_pred hhhHHHHHHHHhhcC--CCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhc---------------CCChhHH
Q psy2915 577 KITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLS---------------DSNPMVV 637 (883)
Q Consensus 577 ~~~~~l~~~l~~~l~--d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~---------------D~d~~V~ 637 (883)
...+.+++.+.+.+. |.++.||..|+.+++.+....++.... ..+++.+.+.+. +....++
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 345667788888887 455899999999999999877654321 123333444433 2355688
Q ss_pred HHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCCh-hhHHHHHHHHhccCC----CChHHHHHHHHHHhHhhcCC
Q psy2915 638 ANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTE-WGQVFILDSLSNYSP----KDDREAQSICERITPRLAHA 712 (883)
Q Consensus 638 ~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~-w~qi~iL~lL~~~~~----~~~~~~~~il~~l~~~l~~~ 712 (883)
..++.++..+....+. .+.+..+..+..+++.+...++ -.+..++..+..+.. .-......+++.+...+++.
T Consensus 574 ~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 8999999999875432 3444556666677776665554 456666666655431 11123346778888888888
Q ss_pred ChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-C--CcchHHHHHHHHHHHHhhCchhHhhccce----e
Q psy2915 713 NAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-S--EPEVQYVALRNINLIVQKRPDILKHEMKV----F 785 (883)
Q Consensus 713 ~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~--~~niry~aL~~l~~l~~~~~~~~~~~~~~----~ 785 (883)
+..++..++.++..+...++. .+ ...+..+.+.+...+. . ++++|-.++..+..++...++.+.++++. +
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~~--~~-~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l 728 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLEE--DF-RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALC 728 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTGG--GG-HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhch--hc-cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 889999999999888766653 22 3334556666666554 2 37899999999999988776666554321 1
Q ss_pred E-EccC-----C-C-----HHHHHHHHHHHHHhccccc-----hhh-------------h------hH-HHHHHHHHHHH
Q psy2915 786 F-VKYN-----D-P-----IYVKLEKLDIMIRLASQAN-----IAQ-------------V------NY-VVQEAIVVIKD 828 (883)
Q Consensus 786 ~-~l~~-----d-d-----~~Ir~~~l~lL~~l~~~~N-----~~~-------------~------~~-~~~e~i~~i~~ 828 (883)
. ++.. | | ..+|..+++.+..++..-+ ... . +. +.+.++..+..
T Consensus 729 ~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~ 808 (861)
T 2bpt_A 729 VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGD 808 (861)
T ss_dssp HHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence 1 2221 1 1 5689999999998885543 211 0 11 23334557888
Q ss_pred HHhhC-CCc----hH-HHHHHHHhhcc--cCCcHHHHHHHHHHHhcCc
Q psy2915 829 IFRKY-PNK----YE-TIISTLCENLD--TLDEPEARASMIWIIGEYA 868 (883)
Q Consensus 829 l~~~~-p~~----~~-~~i~~L~~~l~--~i~~~~~~~~~~w~lgey~ 868 (883)
++..+ +.. .. .+++.|.+.++ .-.++..+..+.|.+|+-.
T Consensus 809 l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 809 IAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 88888 332 23 57778888777 3556788999999999854
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.84 E-value=9.4e-17 Score=206.97 Aligned_cols=776 Identities=12% Similarity=0.121 Sum_probs=449.4
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHHhCCC---C---cccchHHHHhhccCCChhHHHHHHHHHHHhhccCCc-chhh
Q psy2915 14 EIFELKGELNSDKKEKKREAVKKVIASMTVGK---D---VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD-MAIM 86 (883)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~l~kli~~~~~G~---~---~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~-~~~~ 86 (883)
.+..+-+.+.+++...|..++..+.-...... + .....+.+++.+.+++..+|+.+...+...+...++ ..--
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~ 86 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 86 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778888999999999988888766443221 1 224566677888899999999999999887654333 1112
Q ss_pred hcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCc---hh---------hhHHHHH
Q psy2915 87 AFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRV---DK---------ITEYLCE 154 (883)
Q Consensus 87 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~---~~---------~~~~l~~ 154 (883)
+++. +.+.+.|+++.+|..|..+++.+.. ++ ..+.+++
T Consensus 87 i~~~------------------------------Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp 136 (1230)
T 1u6g_C 87 IVDT------------------------------LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 136 (1230)
T ss_dssp HHHH------------------------------HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHH
T ss_pred HHHH------------------------------HHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHH
Confidence 2333 7788899999999998888887632 22 5678888
Q ss_pred HHHhhcC-CCChhHHHHHHHHHHHHhhhCcccccc--ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc--c---
Q psy2915 155 PLRKCLK-DEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR--N--- 226 (883)
Q Consensus 155 ~v~~~l~-d~~~~VRk~A~~al~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~--~--- 226 (883)
.+.+++. ++++.+|..|+.++..+....++.+.. +.+++.+.+.+.|+++.|+..|+.++..+....+... .
T Consensus 137 ~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~ 216 (1230)
T 1u6g_C 137 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE 216 (1230)
T ss_dssp HHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHH
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8999998 488999999999999998765554421 3355667777789999999999999999886543211 1
Q ss_pred -ccccccCCCC-----cHHHHHh-hccccccC--------------CCCCCCchH--HHHHHHHHHhhcCCCChhhHHHH
Q psy2915 227 -LSSRKKQICW-----NLPYLMN-LSVIYPAW--------------PLSTINPHT--PLLKVLMKLMEMLPGEGDFVSTL 283 (883)
Q Consensus 227 -l~~~~~~~~w-----~q~~~l~-l~~~~~~~--------------~l~~~n~~v--~~~~~l~~l~~~~~~~~~~~~~~ 283 (883)
++..+....| .-+..+. +....|.. .+.+.++.+ .+..++..+....+.. + ...
T Consensus 217 ~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~ 293 (1230)
T 1u6g_C 217 HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--V-YPH 293 (1230)
T ss_dssp HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC--C-HHH
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH--H-HHh
Confidence 1111100001 1122222 22111110 223455555 4445555554444432 1 113
Q ss_pred HHHHhHHHHHhhcCC--------------------------------------hhHHHHHHHHHHHHHhhCchhHHhccc
Q psy2915 284 TKKLAPPLVTLLSSE--------------------------------------PEVQYVALRNINLIVQKRPDILKHEMK 325 (883)
Q Consensus 284 ~~~~~~~L~~lL~~~--------------------------------------~~vr~~aL~~l~~l~~~~~~~~~~~~~ 325 (883)
+..+++.+...+..+ .++|..|+..+..++...|+.+.+++.
T Consensus 294 l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~ 373 (1230)
T 1u6g_C 294 VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373 (1230)
T ss_dssp HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 344445554444211 246888888888888877765555431
Q ss_pred -----ceeeccCCCHHHHHHHHHHHHHhcCh-------------------------hhHHHHHHHHHHhhhhcCHHHHHH
Q psy2915 326 -----VFFVKYNDPIYVKLEKLDIMIRLASQ-------------------------ANIAQVLSELKEYATEVDVDFVRK 375 (883)
Q Consensus 326 -----~~~~l~~~~~~Ir~~aL~iL~~l~~~-------------------------~nv~~Il~eL~~~~~~~d~~~r~~ 375 (883)
....+.+....+|..+++.+..++.. ..+..+++.+...+.+.++.+|..
T Consensus 374 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~ 453 (1230)
T 1u6g_C 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQC 453 (1230)
T ss_dssp TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHH
Confidence 12234666778888888877766532 122345555555577778888888
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCC--HHHHHHHHHHHHHHhhcCCch-H--
Q psy2915 376 AVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDEN--TQVQLQLLTAIVKLFLKRPTD-T-- 450 (883)
Q Consensus 376 ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~--~~vr~~~L~al~Kl~~~~~~~-~-- 450 (883)
++.+++.++...+.... +..+.++..+.+.+.+.. ..++..++.+++.+....+++ .
T Consensus 454 ~~~~L~~l~~~~~~~l~------------------~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 515 (1230)
T 1u6g_C 454 CFNMLTELVNVLPGALT------------------QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP 515 (1230)
T ss_dssp HHHHHHHHHHHSTTTTG------------------GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH
T ss_pred HHHHHHHHHHHchhhhH------------------HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh
Confidence 88888887765442211 112334444444444443 488888888888876533222 2
Q ss_pred --HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhcc-----CCCccc----chHHHHHhh-
Q psy2915 451 --QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTV-----GKDVSA----LFPDVVNCM- 518 (883)
Q Consensus 451 --~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~-----g~~~~~----~~~~vi~ll- 518 (883)
..+++.++... .| .++.+|..|...+. .++..+.. +.+..+ .+..++..+
T Consensus 516 ~l~~llp~L~~~l-~d-~~~~v~~~al~~l~----------------~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 577 (1230)
T 1u6g_C 516 HVQALVPPVVACV-GD-PFYKITSEALLVTQ----------------QLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577 (1230)
T ss_dssp HHTTTHHHHHHHH-TC-SSHHHHHHHHHHHH----------------HHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-cc-cchHHHHHHHHHHH----------------HHHHHhcCcccccccchHHHHHHHHHHHHHHHh
Confidence 23444455443 33 36777665543222 22211111 112222 233344555
Q ss_pred -cccchhHHHHHHHHHHhhccC----CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCC-------hhhhhHHHHHHH
Q psy2915 519 -QTDNLELKKLVYLYLMNYAKS----HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIR-------VDKITEYLCEPL 586 (883)
Q Consensus 519 -~s~~~~~kr~~yl~~~~~~~~----~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~-------~~~~~~~l~~~l 586 (883)
.+.+..+|..+..+++.+... -.....-+.+.+..-+.++ ..|..|+++++.+. ...+.+.+++.+
T Consensus 578 ~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L 655 (1230)
T 1u6g_C 578 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 655 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHH
Confidence 556677777766666666322 1122234555666666544 47888888887542 256778889999
Q ss_pred HhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHH---hhcCCChhHHHHHHHHHHHHHhcCCCch--hhHHhc
Q psy2915 587 RKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKD---LLSDSNPMVVANAVAALSEMNEASTSGV--ALIEMN 661 (883)
Q Consensus 587 ~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~---lL~D~d~~V~~~a~~~l~~i~~~~~~~~--~~~~l~ 661 (883)
.+.+.|.++.+|..|+.++.++.+..++.+....+.+.+.. +++|+|..+...++.++..+.+..|... ....++
T Consensus 656 ~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l 735 (1230)
T 1u6g_C 656 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735 (1230)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHH
Confidence 99999999999999999999999988866543344444433 4568899999999999999986544211 001111
Q ss_pred HHHHH----------------HHHHHcccCC-------------------------hh----hHHHHHHHH---------
Q psy2915 662 AQTIN----------------KLLTALNECT-------------------------EW----GQVFILDSL--------- 687 (883)
Q Consensus 662 ~~~~~----------------~L~~~l~~~~-------------------------~w----~qi~iL~lL--------- 687 (883)
+..+. .+.+.+...+ .+ .-.+.+..+
T Consensus 736 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~ 815 (1230)
T 1u6g_C 736 NELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 815 (1230)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH
T ss_pred HHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH
Confidence 11110 0111110000 00 000011111
Q ss_pred ---hccC-----CCChHHH--------------------HHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHH
Q psy2915 688 ---SNYS-----PKDDREA--------------------QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVS 739 (883)
Q Consensus 688 ---~~~~-----~~~~~~~--------------------~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~ 739 (883)
..+. +...... .++.+.+...+.+.+..|+..|+.+++.+..
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~---------- 885 (1230)
T 1u6g_C 816 AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV---------- 885 (1230)
T ss_dssp HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc----------
Confidence 0000 0000000 1244566667778888899888888887741
Q ss_pred HHHHHhhhHHHHhccCCcchHHHHHHHHHHHHhhCc-hhHhhcc----ceeE-EccCCCHHHHHHHHHHHHHhccccchh
Q psy2915 740 TLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRP-DILKHEM----KVFF-VKYNDPIYVKLEKLDIMIRLASQANIA 813 (883)
Q Consensus 740 ~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~~~~-~~~~~~~----~~~~-~l~~dd~~Ir~~~l~lL~~l~~~~N~~ 813 (883)
..+....+.+...+.+.++.||..+..+..+....+ +.+.++. +.++ .+.+++..+|..+-+.+..++....-.
T Consensus 886 ~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~ 965 (1230)
T 1u6g_C 886 GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET 965 (1230)
T ss_dssp HTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG
T ss_pred cCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChHH
Confidence 112234555555566668889999999988876542 2233322 2222 234457788888888888877543211
Q ss_pred h-----------hhHHHHHHHHHHHHHHhhCCCchHHHHHH----HHhhcccCCcHHHHHHHHHHHhcCcCcc
Q psy2915 814 Q-----------VNYVVQEAIVVIKDIFRKYPNKYETIIST----LCENLDTLDEPEARASMIWIIGEYAERI 871 (883)
Q Consensus 814 ~-----------~~~~~~e~i~~i~~l~~~~p~~~~~~i~~----L~~~l~~i~~~~~~~~~~w~lgey~~~~ 871 (883)
. ......-++..++.++...|......+.. +...++. .+++.|+++++.+|..++.-
T Consensus 966 l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d-~~~~vr~~a~~~l~~~~~~~ 1037 (1230)
T 1u6g_C 966 LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED-PDLNVRRVALVTFNSAAHNK 1037 (1230)
T ss_dssp THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSS-SSTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhcC
Confidence 1 12233333345555555455554433433 3333333 46789999998888766443
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.83 E-value=2.7e-17 Score=211.99 Aligned_cols=622 Identities=10% Similarity=0.107 Sum_probs=389.3
Q ss_pred hhhhchhcCCCCHHHHHHHHHHhccCC-------chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccccccc
Q psy2915 118 VGVFVKDCEDSNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQG 190 (883)
Q Consensus 118 ~~~l~kDL~~~n~~vr~lALr~L~~i~-------~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~ 190 (883)
++++...+.|+++.+|..|...|.+.- .+...+.+.+.+.+.+.|+++.||+.|+.+++.+....++... +.
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~-~~ 86 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-ET 86 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-HH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH-HH
Confidence 445778899999999999988776532 1234557778888999999999999999999999876654211 33
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHh
Q psy2915 191 FLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLM 270 (883)
Q Consensus 191 ~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~ 270 (883)
+++.+.+.+.|+++.|+.+|..++..+...-+... .+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~------------------------------~~------------- 123 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS------------------------------SG------------- 123 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc------------------------------cc-------------
Confidence 56777777789999999999999988875422110 00
Q ss_pred hcCCCChhhHHHHHHHHhHHHHHhhc--CChhHHHHHHHHHHHHHhhCchhHHhcc-----cceeeccCCCHHHHHHHHH
Q psy2915 271 EMLPGEGDFVSTLTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDILKHEM-----KVFFVKYNDPIYVKLEKLD 343 (883)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~vr~~aL~~l~~l~~~~~~~~~~~~-----~~~~~l~~~~~~Ir~~aL~ 343 (883)
..........+.+.|...+. .++++|..|+..+..++...+..+.+|. ..+.++.+++..+|..|+.
T Consensus 124 ------~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 124 ------SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 00112234566777777775 3568999999999999988776655542 2344678888999999999
Q ss_pred HHHHhcChhh---HHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHH
Q psy2915 344 IMIRLASQAN---IAQVLSELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLES 419 (883)
Q Consensus 344 iL~~l~~~~n---v~~Il~eL~~~~~~~-d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~ 419 (883)
.+..++.... ...+++.|..++.+. +..+|+.++.+++.++...+.. ..+..+.++..
T Consensus 198 al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~------------------~~~~l~~l~~~ 259 (1230)
T 1u6g_C 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR------------------IGEYLEKIIPL 259 (1230)
T ss_dssp HHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG------------------GTTSCTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHH
Confidence 9999886432 234566666665443 3467888899999888654431 11222334555
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCC-CChhhh--------hhhH------HHH---Hhh
Q psy2915 420 FLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDS-DNPDLR--------DRGF------IYW---RLL 481 (883)
Q Consensus 420 l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~-~~~evr--------drA~------~y~---~ll 481 (883)
+.+.+.++++.+|...+.++..+....+....+.+..++.....-. .++... ++.. +.. ...
T Consensus 260 ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 339 (1230)
T 1u6g_C 260 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEY 339 (1230)
T ss_dssp HHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccc
Confidence 5555556777788888888777766655554445555444332110 011100 0000 000 000
Q ss_pred c-CCchhhhhhhhhHHHHHhh--ccCCCcc----cchHHHHHhhcccchhHHHHHHHHHHhhccC---------------
Q psy2915 482 S-TGNTFYILLHLTRLVIASM--TVGKDVS----ALFPDVVNCMQTDNLELKKLVYLYLMNYAKS--------------- 539 (883)
Q Consensus 482 ~-~~~~~~~~~~~l~kli~~~--~~g~~~~----~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~--------------- 539 (883)
. .+.....++......+..+ ..|.... ...+.++..+.+.+..+|..++-++..+...
T Consensus 340 ~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 419 (1230)
T 1u6g_C 340 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 419 (1230)
T ss_dssp -----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----------
T ss_pred ccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccc
Confidence 0 0000111122222222211 1222112 2233344556666777777766655444221
Q ss_pred ---C-----chhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCCh--HHHhhHHH
Q psy2915 540 ---H-----PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDP--YVRKTAAV 603 (883)
Q Consensus 540 ---~-----~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l~d~~~--~VRk~A~~ 603 (883)
. ....-.+++.+.+-++++++.+|..++..++.+.. ....+.+++.+.+.+.|+++ .||..|+.
T Consensus 420 ~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~ 499 (1230)
T 1u6g_C 420 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALS 499 (1230)
T ss_dssp -CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHH
T ss_pred cccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 0 11223355666777999999999999998886522 24567889999999999876 99999999
Q ss_pred HHHHHHhh-cccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCC-----chhhHHhcHHHHHHHHHHc--c
Q psy2915 604 CVAKLYDI-NAQLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTS-----GVALIEMNAQTINKLLTAL--N 673 (883)
Q Consensus 604 al~~l~~~-~~~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~-----~~~~~~l~~~~~~~L~~~l--~ 673 (883)
++..+... .|+.+. -+.+++.+...+.|+++.|+..|+.++..+.+.-.. ...+.++.+..+..++..+ .
T Consensus 500 ~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 579 (1230)
T 1u6g_C 500 CLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA 579 (1230)
T ss_dssp HHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc
Confidence 99988763 344221 135778888888999999999999999888753111 1233344556666677766 4
Q ss_pred cCChhhHHHHHHHHhccCC----CChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHH
Q psy2915 674 ECTEWGQVFILDSLSNYSP----KDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPL 749 (883)
Q Consensus 674 ~~~~w~qi~iL~lL~~~~~----~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L 749 (883)
+.++-.+...++.++.+.. .-......+++.+...+.+. .++..+++++..+.....+. + ....+..+.+.+
T Consensus 580 d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~-~-~~~~~~~i~~~L 655 (1230)
T 1u6g_C 580 DIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKI-D-LRPVLGEGVPIL 655 (1230)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCC-C-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCcccc-c-hHHHHHHHHHHH
Confidence 5566566666666666431 11123345666666666543 46677888888875322111 1 244556677777
Q ss_pred HHhcc-CCcchHHHHHHHHHHHHhhCchh-----HhhccceeE-EccCCCHHHHHHHHHHHHHhccccc
Q psy2915 750 VTLLS-SEPEVQYVALRNINLIVQKRPDI-----LKHEMKVFF-VKYNDPIYVKLEKLDIMIRLASQAN 811 (883)
Q Consensus 750 ~~ll~-~~~niry~aL~~l~~l~~~~~~~-----~~~~~~~~~-~l~~dd~~Ir~~~l~lL~~l~~~~N 811 (883)
...+. .+.++|..++..+..++...+.. +.+.+..+. .+.++|+.++..+++.+..++....
T Consensus 656 ~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 656 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 77776 57789999999999999988643 223232222 2345689999999999999986543
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.82 E-value=3.7e-16 Score=193.87 Aligned_cols=687 Identities=12% Similarity=0.073 Sum_probs=419.9
Q ss_pred cHHHHHHHh-cCCChHHHHHHHHHHHHHHhCCCCcccchHHHHhhccC--CChhHHHHHHHHHHHhhccCCcchhhhccc
Q psy2915 14 EIFELKGEL-NSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQT--DNLELKKLVYLYLMNYAKSHPDMAIMAFST 90 (883)
Q Consensus 14 ~~~~~~~~l-~~~~~~~~~~~l~kli~~~~~G~~~~~~~~~v~~~~~~--~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~ 90 (883)
++.++-... .+++...|+.+-..+--.... +...++.....++.+ .+..+|.++-+++.+..+.+....--..+.
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND--NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHcccCcCHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 445555566 788888888887777554332 233455566676655 467899999988888643221000000000
Q ss_pred ccccc-cCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchh----hhHHHHHHHHhhcCCC-C
Q psy2915 91 FFYQK-SSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDK----ITEYLCEPLRKCLKDE-D 164 (883)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~----~~~~l~~~v~~~l~d~-~ 164 (883)
.+.+ +++.-...+.- .+..-+.++++.+|..+..+++.+...+ -.+.+++.+.+.+.++ +
T Consensus 83 -~~~~~l~~~~~~~ik~-------------~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~ 148 (861)
T 2bpt_A 83 -RWITQVSPEAKNQIKT-------------NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQP 148 (861)
T ss_dssp -HHHHHSCHHHHHHHHH-------------HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSC
T ss_pred -hHhhhCCHHHHHHHHH-------------HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCC
Confidence 0000 11111111111 1666788999999998888888765432 4567888889999988 9
Q ss_pred hhHHHHHHHHHHHHhhhCccc---cc--cccHHHHHHHHhcCC--ChhHHHHHHHHHHhccccCCccccccccccCCCCc
Q psy2915 165 PYVRKTAAVCVAKLYDINAQL---VE--DQGFLDQLKDLLSDS--NPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWN 237 (883)
Q Consensus 165 ~~VRk~A~~al~kl~~~~p~~---~~--~~~~~~~L~~lL~D~--d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~ 237 (883)
+.+|..|+.++..+.+..+.. +. -..+++.+...+.|+ ++.|+.+|+.++..+...-....
T Consensus 149 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~------------ 216 (861)
T 2bpt_A 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------------ 216 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHH------------
T ss_pred HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHc------------
Confidence 999999999999998744322 11 122445556667777 89999999998887653110000
Q ss_pred HHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhC
Q psy2915 238 LPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKR 316 (883)
Q Consensus 238 q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~ 316 (883)
... . ....+.+.+..++. .++++|..++..+..++..+
T Consensus 217 ------------------------------------~~~-~----~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~ 255 (861)
T 2bpt_A 217 ------------------------------------ERE-G----ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp ------------------------------------TSH-H----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------cCh-h----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 000 0 00112333334443 56789999999999999998
Q ss_pred chhHHhccc-c-----eeeccCCCHHHHHHHHHHHHHhcChh-----------------------hHHHHHHHHHHhhhh
Q psy2915 317 PDILKHEMK-V-----FFVKYNDPIYVKLEKLDIMIRLASQA-----------------------NIAQVLSELKEYATE 367 (883)
Q Consensus 317 ~~~~~~~~~-~-----~~~l~~~~~~Ir~~aL~iL~~l~~~~-----------------------nv~~Il~eL~~~~~~ 367 (883)
|+.+.+|+. . +.++.+++..+|..+++.+..++... .+..+++.|...+++
T Consensus 256 ~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~ 335 (861)
T 2bpt_A 256 YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTR 335 (861)
T ss_dssp GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 887777653 2 22567888999999999998887642 225566777666543
Q ss_pred -------cCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Q psy2915 368 -------VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIV 440 (883)
Q Consensus 368 -------~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~ 440 (883)
.+..+|..+..+++.++..++.. +++ .++..+.+.+.+.++.+|.+++.+++
T Consensus 336 ~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~------------------~l~~~l~~~l~~~~~~~r~~a~~~l~ 394 (861)
T 2bpt_A 336 QNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILE------------------PVLEFVEQNITADNWRNREAAVMAFG 394 (861)
T ss_dssp CCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHH------------------HHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred cccccccccCcHHHHHHHHHHHHHHHccHh---HHH------------------HHHHHHHHHcCCCChhHHHHHHHHHH
Confidence 23578889999999888766532 122 23333444455678999999999999
Q ss_pred HHhhcCC-chH----HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHH
Q psy2915 441 KLFLKRP-TDT----QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVV 515 (883)
Q Consensus 441 Kl~~~~~-~~~----~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi 515 (883)
.+..... ... ..+++.++.... | .++.||..+.....-+..... . .+.........+..++
T Consensus 395 ~i~~~~~~~~~~~~l~~il~~l~~~l~-d-~~~~vr~~a~~~l~~l~~~~~---------~---~~~~~~~~~~~l~~l~ 460 (861)
T 2bpt_A 395 SIMDGPDKVQRTYYVHQALPSILNLMN-D-QSLQVKETTAWCIGRIADSVA---------E---SIDPQQHLPGVVQACL 460 (861)
T ss_dssp HTSSSSCHHHHHHHHHHHHHHHHHGGG-C-SCHHHHHHHHHHHHHHHHHHG---------G---GSCTTTTHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHHHHHhh---------h---hcCCHHHHHHHHHHHH
Confidence 8875432 222 334444555443 4 379999887643322211100 0 0000011223344445
Q ss_pred HhhcccchhHHHHHHHHHHhhccC-----Cc---hhhHhHHHHHHhhcCC--CCHHHHHHHHHHhcCCCh------hhhh
Q psy2915 516 NCMQTDNLELKKLVYLYLMNYAKS-----HP---DMAIMAVNTFVKDCED--SNPLIRALAVRTMGCIRV------DKIT 579 (883)
Q Consensus 516 ~ll~s~~~~~kr~~yl~~~~~~~~-----~~---~~~~l~~n~l~kdl~~--~n~~vr~~AL~~L~~i~~------~~~~ 579 (883)
+.+.++ ..++..+..++..+.+. .. ....-+++.+.+-+++ .++.+|..|+.+++.+.. ....
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~ 539 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS 539 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH
Confidence 556554 55666555555544321 11 1223456677777764 447899999999886622 2234
Q ss_pred HHHHHHHHhhcC---------------CCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhcCCCh-hHHHHHH
Q psy2915 580 EYLCEPLRKCLK---------------DEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLSDSNP-MVVANAV 641 (883)
Q Consensus 580 ~~l~~~l~~~l~---------------d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~D~d~-~V~~~a~ 641 (883)
+.++|.+.+.+. +..+.+|..++.++..+.+..+..+. -+.+++.+...+.+.++ .|+..++
T Consensus 540 ~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~ 619 (861)
T 2bpt_A 540 ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVF 619 (861)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHH
Confidence 445555555543 23567899999999999987655332 12456667777888777 8999999
Q ss_pred HHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCC----ChHHHHHHHHHHhHhhcCCC--hH
Q psy2915 642 AALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPK----DDREAQSICERITPRLAHAN--AA 715 (883)
Q Consensus 642 ~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~----~~~~~~~il~~l~~~l~~~~--~a 715 (883)
.++..+..... ..+....+..+..+.+.+.+.++-.+...+.++..+... -......+++.+...+++.+ ..
T Consensus 620 ~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 697 (861)
T 2bpt_A 620 YAISALAASLG--KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp HHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTT
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHh
Confidence 98888875421 234455566666777766554444555555555543211 11233466777777777765 78
Q ss_pred HHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCC------------cchHHHHHHHHHHHHhhCc---hhHhh
Q psy2915 716 VVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE------------PEVQYVALRNINLIVQKRP---DILKH 780 (883)
Q Consensus 716 V~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~------------~niry~aL~~l~~l~~~~~---~~~~~ 780 (883)
|+..++.++..+....+. .+ ...+..+.+++...+... .++|-.+++.+..++.... ..+.+
T Consensus 698 vr~~~~~~l~~l~~~~~~--~~-~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~ 774 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNIGA--DF-IPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFP 774 (861)
T ss_dssp HHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGG
T ss_pred hhHHHHHHHHHHHHHhhh--hH-HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 888888898888755543 22 334555666666655532 3578888999988887653 55666
Q ss_pred ccceeE-----EccCC----CHHHHHHHHHHHHHhcccc
Q psy2915 781 EMKVFF-----VKYND----PIYVKLEKLDIMIRLASQA 810 (883)
Q Consensus 781 ~~~~~~-----~l~~d----d~~Ir~~~l~lL~~l~~~~ 810 (883)
++..++ ++.+. ++.+|..+++++..++..-
T Consensus 775 ~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 775 YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp GHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 542221 22331 7899999999999999855
No 17
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.79 E-value=3.3e-15 Score=185.68 Aligned_cols=660 Identities=11% Similarity=0.064 Sum_probs=387.6
Q ss_pred CCHHHHHHHHHHhccC------------------CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhC-c-cccc
Q psy2915 128 SNPLIRALAVRTMGCI------------------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN-A-QLVE 187 (883)
Q Consensus 128 ~n~~vr~lALr~L~~i------------------~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~-p-~~~~ 187 (883)
.++.+|..|...|.+. -.++..+.+...+.+++.++++.+ +.++.++..+.+.. | +.+
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w- 126 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQW- 126 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCC-
T ss_pred CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccccc-
Confidence 4567777776665542 123344455566778888999999 99999999988753 4 445
Q ss_pred cccHHHHHHHHhcCC--ChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHH
Q psy2915 188 DQGFLDQLKDLLSDS--NPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKV 265 (883)
Q Consensus 188 ~~~~~~~L~~lL~D~--d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~ 265 (883)
+.+++.+.+.++++ ++.++..|+.++..+++......
T Consensus 127 -~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---------------------------------------- 165 (876)
T 1qgr_A 127 -PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---------------------------------------- 165 (876)
T ss_dssp -TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH----------------------------------------
T ss_pred -HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh----------------------------------------
Confidence 45889999999888 99999999999998876421000
Q ss_pred HHHHhhcCCCChhhHHHHHHHHhHHHHHhhcC---ChhHHHHHHHHHHHHHhhCchhHH-----hc-ccc-eeeccCCCH
Q psy2915 266 LMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS---EPEVQYVALRNINLIVQKRPDILK-----HE-MKV-FFVKYNDPI 335 (883)
Q Consensus 266 l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~vr~~aL~~l~~l~~~~~~~~~-----~~-~~~-~~~l~~~~~ 335 (883)
.......+.+.+...+.+ ++++|..|+.++..++...+..+. .+ +.. +..+.+++.
T Consensus 166 --------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 166 --------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp --------------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred --------------HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 000122334444444432 245666677666665543221111 11 111 113456666
Q ss_pred HHHHHHHHHHHHhcCh------hhHH-HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhH-hh
Q psy2915 336 YVKLEKLDIMIRLASQ------ANIA-QVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK-YA 407 (883)
Q Consensus 336 ~Ir~~aL~iL~~l~~~------~nv~-~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~-~~ 407 (883)
.+|..+++.|..++.. ..+. .+++-+.....+.++++|..++..+..++.........--+ ...+. .+
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~----~~~~~~~~ 307 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE----AAEQGRPP 307 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhcc----ccccCCCc
Confidence 6777777777666532 1222 44555555555667777777777776666432100000000 00000 00
Q ss_pred -----hhh-CCHHHHHHHHhhhhc-------CCCHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHhhcCCCChhhhhh
Q psy2915 408 -----ERI-DNADELLESFLEGFH-------DENTQVQLQLLTAIVKLFLKRPTD-TQELVQQVLSLATQDSDNPDLRDR 473 (883)
Q Consensus 408 -----~~i-~~~~~il~~l~~~~~-------~~~~~vr~~~L~al~Kl~~~~~~~-~~~~l~~ll~~~~~d~~~~evrdr 473 (883)
... +....++..+.+.+. ++++.+|..+..++..+....+.. ...+++.+.+.. .+ .++.+|+.
T Consensus 308 ~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l-~~-~~~~~r~~ 385 (876)
T 1qgr_A 308 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI-KN-PDWRYRDA 385 (876)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT-TC-SSHHHHHH
T ss_pred cchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHc-cC-CChHHHHH
Confidence 000 001122222222221 345678888877777765544333 334444444443 34 37999999
Q ss_pred hHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCC------chhhHhH
Q psy2915 474 GFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSH------PDMAIMA 547 (883)
Q Consensus 474 A~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~------~~~~~l~ 547 (883)
|...+..+..+..... +... ....+..+++.+.++++.+|..+..+++.+.... .....-+
T Consensus 386 a~~~l~~i~~~~~~~~----~~~~---------~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 386 AVMAFGCILEGPEPSQ----LKPL---------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (876)
T ss_dssp HHHHHHHTSSSSCHHH----HHHH---------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHH
T ss_pred HHHHHHHHHcCCCHHH----HHHH---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHH
Confidence 9877776654432111 1111 1123455667788888899999888888885442 2344567
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh--------------------hhhhHHHHHHHHhhcCCC---ChHHHhhHHHH
Q psy2915 548 VNTFVKDCEDSNPLIRALAVRTMGCIRV--------------------DKITEYLCEPLRKCLKDE---DPYVRKTAAVC 604 (883)
Q Consensus 548 ~n~l~kdl~~~n~~vr~~AL~~L~~i~~--------------------~~~~~~l~~~l~~~l~d~---~~~VRk~A~~a 604 (883)
++.+.+.+.++ +.+|..|+.+++.+.. ....+.+++.+.+.+.+. ++.+|..+..+
T Consensus 453 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~ 531 (876)
T 1qgr_A 453 LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531 (876)
T ss_dssp HHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHH
Confidence 78888888885 8899998888876532 135567888888888765 46899999999
Q ss_pred HHHHHhhccccccc--ccHHHHHHHhh-----------cCCC----hhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHH
Q psy2915 605 VAKLYDINAQLVED--QGFLDQLKDLL-----------SDSN----PMVVANAVAALSEMNEASTSGVALIEMNAQTINK 667 (883)
Q Consensus 605 l~~l~~~~~~~~~~--~~~~~~l~~lL-----------~D~d----~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~ 667 (883)
+..+.+..+..... ..+++.+.+.+ .|.| +.++..++.++..+....+ ...+.+..+..+..
T Consensus 532 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~l~~~ 610 (876)
T 1qgr_A 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ-HQDALQISDVVMAS 610 (876)
T ss_dssp HHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSC-HHHHHTTHHHHHHH
T ss_pred HHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhC-hhhhhHHHHHHHHH
Confidence 99999876643221 12233333322 2334 5678889999999886532 03344556677777
Q ss_pred HHHHcccCC--hhhHHHHHHHHhccCC----CChHHHHHHHHHHhHhhcCC-ChHHHHHHHHHHHHhhhhCCCChhhHHH
Q psy2915 668 LLTALNECT--EWGQVFILDSLSNYSP----KDDREAQSICERITPRLAHA-NAAVVLSAVKVLMKLMEMLPGEGDFVST 740 (883)
Q Consensus 668 L~~~l~~~~--~w~qi~iL~lL~~~~~----~~~~~~~~il~~l~~~l~~~-~~aV~~eai~~i~~~~~~~~~~~~l~~~ 740 (883)
+++.+...+ +..+..+++++..+.. .-......+++.+...+.+. +..|+..++.++..+....+. .+ ..
T Consensus 611 l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~-~~ 687 (876)
T 1qgr_A 611 LLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS--NI-IP 687 (876)
T ss_dssp HHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG--GG-HH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--hh-hh
Confidence 777776543 2456667776665432 11122346778888888876 789999999999888654442 22 23
Q ss_pred HHHHhhhHHHHhccC---CcchHHHHHHHHHHHHhhCchhHhhccc----eeE-EccCC----C-------HHHHHHHHH
Q psy2915 741 LTKKLAPPLVTLLSS---EPEVQYVALRNINLIVQKRPDILKHEMK----VFF-VKYND----P-------IYVKLEKLD 801 (883)
Q Consensus 741 ~~~~~~~~L~~ll~~---~~niry~aL~~l~~l~~~~~~~~~~~~~----~~~-~l~~d----d-------~~Ir~~~l~ 801 (883)
.+..+.+.+...+++ +.++|-.++..+..++...+.-+.++++ .+. .+..+ | ..+|..+++
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 345566666666654 4679999999999988765544444332 111 12211 1 278888887
Q ss_pred HHHHhcccc------------chhh---------------h--h-HHHHHHHHHHHHHHhhCCC-ch-----HHHHHHHH
Q psy2915 802 IMIRLASQA------------NIAQ---------------V--N-YVVQEAIVVIKDIFRKYPN-KY-----ETIISTLC 845 (883)
Q Consensus 802 lL~~l~~~~------------N~~~---------------~--~-~~~~e~i~~i~~l~~~~p~-~~-----~~~i~~L~ 845 (883)
.+..++..- .... . + .+.+-++..+..+++.++. .. ..++..+.
T Consensus 768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll 847 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL 847 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHH
Confidence 776554321 1111 0 1 2333345577778877765 32 24566666
Q ss_pred h-hcccCCcHHHHHHHHHHHhcCcC
Q psy2915 846 E-NLDTLDEPEARASMIWIIGEYAE 869 (883)
Q Consensus 846 ~-~l~~i~~~~~~~~~~w~lgey~~ 869 (883)
. .+.. .+++.|.+++|.+|..++
T Consensus 848 ~~~l~~-~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 848 TEGRRS-KTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHhhc-CCHhHHHHHHHHHHHHHH
Confidence 6 5543 578999999999998664
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.75 E-value=9.9e-14 Score=172.33 Aligned_cols=632 Identities=13% Similarity=0.078 Sum_probs=372.2
Q ss_pred CCcccchHHHHhhccCC--ChhHHHHHHHHHHHhhccC-CcchhhhcccccccccCccchhhhccccccccccccchhhh
Q psy2915 45 KDVSALFPDVVNCMQTD--NLELKKLVYLYLMNYAKSH-PDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVF 121 (883)
Q Consensus 45 ~~~~~~~~~v~~~~~~~--~~~~k~~~y~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 121 (883)
.....+++.+..++.++ +...|+.+...+..+.+.. ++... .-+..++ +.+
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~------------~~~~~ll--------------~~l 177 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ------------DKSNEIL--------------TAI 177 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG------------GGHHHHH--------------HHH
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHH------------hHHHHHH--------------HHH
Confidence 34566788888888888 8888887777666665432 22100 0011111 115
Q ss_pred chhcCCC--CHHHHHHHHHHhccCCc---hhh-----hHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccccc---
Q psy2915 122 VKDCEDS--NPLIRALAVRTMGCIRV---DKI-----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED--- 188 (883)
Q Consensus 122 ~kDL~~~--n~~vr~lALr~L~~i~~---~~~-----~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~--- 188 (883)
.+-++++ ++.+|..|+++++.+.. +.+ .+.+.+.+...+.+.++.||+.|+.++..+...+|+.+..
T Consensus 178 ~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 257 (876)
T 1qgr_A 178 IQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG 257 (876)
T ss_dssp HHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5566766 78999999999987532 111 1246667777888999999999999999999988876531
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHH
Q psy2915 189 QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMK 268 (883)
Q Consensus 189 ~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~ 268 (883)
..+++.+...+.|.++.|+..|+..+..+++..+... ..-....+. ...|
T Consensus 258 ~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~----------------~~~~~~~~~----~~~~---------- 307 (876)
T 1qgr_A 258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA----------------IEASEAAEQ----GRPP---------- 307 (876)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHH----SSCC----------
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh----------------hhhcccccc----CCCc----------
Confidence 1456666666778999999999998888765421000 000000000 0000
Q ss_pred HhhcCCCChhhHHHHHHHHhHHHHHhhc--------CChhHHHHHHHHHHHHHhhCchhHHhc-ccce-eeccCCCHHHH
Q psy2915 269 LMEMLPGEGDFVSTLTKKLAPPLVTLLS--------SEPEVQYVALRNINLIVQKRPDILKHE-MKVF-FVKYNDPIYVK 338 (883)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~~~L~~lL~--------~~~~vr~~aL~~l~~l~~~~~~~~~~~-~~~~-~~l~~~~~~Ir 338 (883)
......+....+..+++.++..+. ++.++|..|...+..++...++.+.+. +..+ ..+.+++..+|
T Consensus 308 ----~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 308 ----EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp ----SSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred ----cchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHH
Confidence 000001111123445556666653 234799999999999888766433222 2221 24578889999
Q ss_pred HHHHHHHHHhcChh-------hHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhC
Q psy2915 339 LEKLDIMIRLASQA-------NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERID 411 (883)
Q Consensus 339 ~~aL~iL~~l~~~~-------nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~ 411 (883)
..++..++.++..- ....+++.|...+.+.++.+|..++.+++.++...++.. ...+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----------------~~~~ 447 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA----------------INDV 447 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT----------------SSTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc----------------ccHH
Confidence 99999999998642 235577777788889999999999999999997665420 0012
Q ss_pred CHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhc------------------CCchHHHHHHHHHHHhhcCC-CChhhhh
Q psy2915 412 NADELLESFLEGFHDENTQVQLQLLTAIVKLFLK------------------RPTDTQELVQQVLSLATQDS-DNPDLRD 472 (883)
Q Consensus 412 ~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~------------------~~~~~~~~l~~ll~~~~~d~-~~~evrd 472 (883)
..+.++..+.+.+.+. +.||..+..+++.+... ..+....+++.+++...... ++..+|.
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence 2334455555555443 77888877777766532 11245666666666554321 1345665
Q ss_pred hhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCccc----chHHHHHhhc-----------ccc----hhHHHHHHHHH
Q psy2915 473 RGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSA----LFPDVVNCMQ-----------TDN----LELKKLVYLYL 533 (883)
Q Consensus 473 rA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~----~~~~vi~ll~-----------s~~----~~~kr~~yl~~ 533 (883)
.+.+....+ +... |.+... .+..+++.+. +++ ..++......+
T Consensus 527 ~~~~~l~~l----------------~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 588 (876)
T 1qgr_A 527 SAYESLMEI----------------VKNS--AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588 (876)
T ss_dssp HHHHHHHHH----------------HHTC--CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------HHHC--chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Confidence 555433322 2111 111111 1111122111 112 22233333444
Q ss_pred HhhccCCc-----hhhHhHHHHHHhhcCCCC--HHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCC-ChHHHh
Q psy2915 534 MNYAKSHP-----DMAIMAVNTFVKDCEDSN--PLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDE-DPYVRK 599 (883)
Q Consensus 534 ~~~~~~~~-----~~~~l~~n~l~kdl~~~n--~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l~d~-~~~VRk 599 (883)
+.+...-. .....+.+.+.+-+++++ +.+|..|+.+++.+.. ....+.+++.+...+.+. ++.||+
T Consensus 589 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 589 QNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 44432221 112335666777777764 4788889988886532 334566888888889887 899999
Q ss_pred hHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccC
Q psy2915 600 TAAVCVAKLYDINAQLVED--QGFLDQLKDLLSD--SNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC 675 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D--~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~ 675 (883)
.|+.+++.+.+..++.+.. +.+++.+.+.+.+ .+..++.+++.+++.++...+ ..+....+..+..+.+.+...
T Consensus 669 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g--~~~~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 669 AAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG--GEFKKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHhcc
Confidence 9999999998865443321 3466667777765 467899999999999986422 234445556666666655422
Q ss_pred C----h-------hhHHHHHHHHhc----cCCC----------ChHHHHHHHHHHhHhhcCC--ChHHHHHHHHHHHHhh
Q psy2915 676 T----E-------WGQVFILDSLSN----YSPK----------DDREAQSICERITPRLAHA--NAAVVLSAVKVLMKLM 728 (883)
Q Consensus 676 ~----~-------w~qi~iL~lL~~----~~~~----------~~~~~~~il~~l~~~l~~~--~~aV~~eai~~i~~~~ 728 (883)
. + -.+..+++.+.. +++. -......+++.+.....+. +..|+..|+.++..+.
T Consensus 747 ~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 747 VDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 1 1 223334444432 2221 0112234555555555666 6799999999999998
Q ss_pred hhCCCChhhHHHHHHHhhhHHHH-hc-cCCcchHHHHHHHHHHHHhhC
Q psy2915 729 EMLPGEGDFVSTLTKKLAPPLVT-LL-SSEPEVQYVALRNINLIVQKR 774 (883)
Q Consensus 729 ~~~~~~~~l~~~~~~~~~~~L~~-ll-~~~~niry~aL~~l~~l~~~~ 774 (883)
...+.+ .+.+...+.+.++++. .+ +.++++|-.|...+..+.+..
T Consensus 827 ~~~~~~-~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 827 TAFGKD-VLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHCTH-HHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcH-HHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 766541 2222212334555554 45 467889999988888777653
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.65 E-value=1.6e-13 Score=167.44 Aligned_cols=510 Identities=14% Similarity=0.117 Sum_probs=300.6
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccc---cccccHHH
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLD 193 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~---~~~~~~~~ 193 (883)
+++.+.+.|.++++.+|..|++.++......+....++.+.+++.++++.||..|+.+++.+....+.. ...++.++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~ 195 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence 677799999999999999999998877666677778888999999999999999999999987633211 11235678
Q ss_pred HHHHHhc-CCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhc
Q psy2915 194 QLKDLLS-DSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEM 272 (883)
Q Consensus 194 ~L~~lL~-D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~ 272 (883)
.|.++|. ++|+.++.+|+.+|..+..... ....+.
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~---------------------------------------~~~~i~----- 231 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHRE---------------------------------------GLLAIF----- 231 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHH---------------------------------------HHHHHH-----
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCch---------------------------------------hHHHHH-----
Confidence 8888776 4599999999999988764320 001111
Q ss_pred CCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcCh
Q psy2915 273 LPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQ 351 (883)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~ 351 (883)
-...++.|+.+|+ .++.+|+.|+.+|..++...+..-... .
T Consensus 232 -----------~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v-------------------------~-- 273 (780)
T 2z6g_A 232 -----------KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV-------------------------R-- 273 (780)
T ss_dssp -----------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH-------------------------H--
T ss_pred -----------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH-------------------------H--
Confidence 1135678888885 456899999999988887654221100 0
Q ss_pred hhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHH-----HHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcC
Q psy2915 352 ANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKYAERIDNADELLESFLEGFHD 426 (883)
Q Consensus 352 ~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~-----~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~ 426 (883)
-..+++.|...+.+.+..++..++.++..++...+.... ..+..|++++.+ .
T Consensus 274 --~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~---------------------~ 330 (780)
T 2z6g_A 274 --LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---------------------Y 330 (780)
T ss_dssp --HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT---------------------C
T ss_pred --HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc---------------------C
Confidence 001344455555555666666666666655532221111 122333333322 1
Q ss_pred CCHHHHHHHHHHHHHHhhcCCchHHH-----HHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhh
Q psy2915 427 ENTQVQLQLLTAIVKLFLKRPTDTQE-----LVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASM 501 (883)
Q Consensus 427 ~~~~vr~~~L~al~Kl~~~~~~~~~~-----~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~ 501 (883)
.....+.....++..+.. .+..... .+..++....+. +++++..|...+.-+......
T Consensus 331 ~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~-------------- 393 (780)
T 2z6g_A 331 TYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATK-------------- 393 (780)
T ss_dssp CCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTT--------------
T ss_pred CHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchh--------------
Confidence 122233333333333332 1211111 234455544433 677777775444433322110
Q ss_pred ccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcCC-C-CHHHHHHHHHHhcCCC
Q psy2915 502 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCED-S-NPLIRALAVRTMGCIR 574 (883)
Q Consensus 502 ~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~-~-n~~vr~~AL~~L~~i~ 574 (883)
..........+++++.+.+..+++.+..++..+....++... -.+..+.+.+.+ + .+.+|..|+++|+++.
T Consensus 394 --~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 394 --QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp --CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 011234556677888889999998888888888766543221 135566666654 2 3589999999999885
Q ss_pred h--hh-------h-hHHHHHHHHhhcCCCC-hHHHhhHHHHHHHHHhhcc--cccccccHHHHHHHhhcCCChhHHHHHH
Q psy2915 575 V--DK-------I-TEYLCEPLRKCLKDED-PYVRKTAAVCVAKLYDINA--QLVEDQGFLDQLKDLLSDSNPMVVANAV 641 (883)
Q Consensus 575 ~--~~-------~-~~~l~~~l~~~l~d~~-~~VRk~A~~al~~l~~~~~--~~~~~~~~~~~l~~lL~D~d~~V~~~a~ 641 (883)
. ++ + ....++.+.+++.+++ +.||+.|+.++.++....+ ..+.+...++.|.++|.+.++.++..|+
T Consensus 472 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 472 SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 3 22 1 1235678888898776 5999999999999975221 1222346778888888877776666544
Q ss_pred HHHHH--HHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHH-----HHHHHHHhHhhcCCCh
Q psy2915 642 AALSE--MNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREA-----QSICERITPRLAHANA 714 (883)
Q Consensus 642 ~~l~~--i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~-----~~il~~l~~~l~~~~~ 714 (883)
-++.. +... ... +-.+...+..|..++.. +... ...++.|..++.+.++
T Consensus 552 ~al~nq~~~~~-~~~----------------------~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 552 MGGTQQQFVEG-VRM----------------------EEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp ------CCSTT-CCH----------------------HHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred hccccchhhcc-cCh----------------------HHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 33322 1000 000 00111223333333221 1111 1347888999999999
Q ss_pred HHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhH
Q psy2915 715 AVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDIL 778 (883)
Q Consensus 715 aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~ 778 (883)
.|+..|+.++..+. .+++....+.+ ...+.|..++. .++++|..+...|..+....|..+
T Consensus 608 ~v~~~a~~aL~~L~----~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 608 NIQRVAAGVLCELA----QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp HHHHHHHHHHHHHH----TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence 99999999998885 33343333222 25667788876 578899999999999988665433
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.60 E-value=2.9e-12 Score=153.56 Aligned_cols=475 Identities=13% Similarity=0.094 Sum_probs=297.0
Q ss_pred Ccccc-hHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchh
Q psy2915 46 DVSAL-FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKD 124 (883)
Q Consensus 46 ~~~~~-~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kD 124 (883)
++..+ .+..+.++.+++..+|..+-..+..++...+....+.... .+++.+.+-
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~-------------------------~~i~~Lv~~ 64 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-------------------------QMVSAIVRT 64 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCH-------------------------HHHHHHHHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhcc-------------------------ChHHHHHHH
Confidence 33443 6777888889999999998888888876654321111111 124447777
Q ss_pred cCC-CCHHHHHHHHHHhccCCch-h----hh-HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccc---cccccHHHH
Q psy2915 125 CED-SNPLIRALAVRTMGCIRVD-K----IT-EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQ 194 (883)
Q Consensus 125 L~~-~n~~vr~lALr~L~~i~~~-~----~~-~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~---~~~~~~~~~ 194 (883)
|.+ +++.+|..|+++|.++... + +. ...++.+.+++.++++.||+.|+.++.++....++. +.+.+.++.
T Consensus 65 L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~ 144 (644)
T 2z6h_A 65 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 144 (644)
T ss_dssp HHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHH
Confidence 765 4899999998888876432 1 11 235677888899999999999999999998765432 224578899
Q ss_pred HHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCC
Q psy2915 195 LKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLP 274 (883)
Q Consensus 195 L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~ 274 (883)
|.++|.+.++.++..++.+|..++...+... ..+.
T Consensus 145 Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~--------------------------------------~~i~------- 179 (644)
T 2z6h_A 145 MVALLNKTNVKFLAITTDCLQILAYGNQESK--------------------------------------LIIL------- 179 (644)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH--------------------------------------HHHH-------
T ss_pred HHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH--------------------------------------HHHH-------
Confidence 9999999999888888888877764322111 0000
Q ss_pred CChhhHHHHHHHHhHHHHHhhcC--ChhHHHHHHHHHHHHHhhCc--hhHHhc--c-cceeeccCCCHHHHHHHHHHHHH
Q psy2915 275 GEGDFVSTLTKKLAPPLVTLLSS--EPEVQYVALRNINLIVQKRP--DILKHE--M-KVFFVKYNDPIYVKLEKLDIMIR 347 (883)
Q Consensus 275 ~~~~~~~~~~~~~~~~L~~lL~~--~~~vr~~aL~~l~~l~~~~~--~~~~~~--~-~~~~~l~~~~~~Ir~~aL~iL~~ 347 (883)
-...++.|+.+|.+ ...+++.++..+..++.... ..+... + ..+..+.+++..+++.++.+|..
T Consensus 180 ---------~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 180 ---------ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp ---------HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred ---------HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01123444444432 12445555555555443111 111111 1 12224455677788888888888
Q ss_pred hcCh----hhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHH-----HHHHHHHHHHhHhhhhhCCHHHHHH
Q psy2915 348 LASQ----ANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQTKYAERIDNADELLE 418 (883)
Q Consensus 348 l~~~----~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~-----~v~~Ll~lL~~~~~~~i~~~~~il~ 418 (883)
++.. ..+..+++.|...+.+.+++++..++.+++.++...+..... .++.|++++...
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~------------- 317 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA------------- 317 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH-------------
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc-------------
Confidence 8753 234567888888888889999999999999998754432221 233333333321
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhcCCch--H------HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhh
Q psy2915 419 SFLEGFHDENTQVQLQLLTAIVKLFLKRPTD--T------QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYIL 490 (883)
Q Consensus 419 ~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~--~------~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~ 490 (883)
.+.+.++..++.+++.+....+.. . ...++.+.+...++ .+++++..|.....-+..+++..
T Consensus 318 -------~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~~~~~~-- 387 (644)
T 2z6h_A 318 -------GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANH-- 387 (644)
T ss_dssp -------TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTSGGGH--
T ss_pred -------CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHccCHHHH--
Confidence 123678888888888886543321 1 13456666666655 35789998877666665553311
Q ss_pred hhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHh--hccCCchhhHhHHHHHHhhcCCCCHHHHHHHHH
Q psy2915 491 LHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMN--YAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVR 568 (883)
Q Consensus 491 ~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~--~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~ 568 (883)
..++. ..+...+++++.+.++.+|+-+..+++. +.. ...++.++..|+.
T Consensus 388 ----~~i~~--------~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~-----------------~~~~~~v~~~a~~ 438 (644)
T 2z6h_A 388 ----APLRE--------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE-----------------GVRMEEIVEGCTG 438 (644)
T ss_dssp ----HHHHH--------TTHHHHHHHHHHHHHHHHTTC----------CC-----------------SSCHHHHHHHHHH
T ss_pred ----HHHHH--------cCCHHHHHHHHhccchhhhhHhhhccccchhcc-----------------cccHHHHHHHHHH
Confidence 11111 2346677788877777777654443332 100 0123556666666
Q ss_pred HhcCCCh-hhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhh--cccccccccHHHHHHHhhcCCChhHHHHH
Q psy2915 569 TMGCIRV-DKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI--NAQLVEDQGFLDQLKDLLSDSNPMVVANA 640 (883)
Q Consensus 569 ~L~~i~~-~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~--~~~~~~~~~~~~~l~~lL~D~d~~V~~~a 640 (883)
+|+++.. ++... ..++.+.+++.++++.||+.|+.++.++... ....+.....++.|.+++.++|+.|+.+|
T Consensus 439 aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A 518 (644)
T 2z6h_A 439 ALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 518 (644)
T ss_dssp HHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHH
Confidence 6665532 22211 2467888999999999999999999988753 22334345577899999999999999999
Q ss_pred HHHHHHHHhcC
Q psy2915 641 VAALSEMNEAS 651 (883)
Q Consensus 641 ~~~l~~i~~~~ 651 (883)
..+|..+....
T Consensus 519 ~~aL~~l~~~~ 529 (644)
T 2z6h_A 519 AAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHhccC
Confidence 99999998753
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.60 E-value=7e-13 Score=154.74 Aligned_cols=446 Identities=12% Similarity=0.081 Sum_probs=277.0
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchh-----hh--HHHHHHHHhhcCC-CChhHHHHHHHHHHHHhhhC--cccc
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDK-----IT--EYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDIN--AQLV 186 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~-----~~--~~l~~~v~~~l~d-~~~~VRk~A~~al~kl~~~~--p~~~ 186 (883)
+++.+.+-|+++++.+|..|+.+|+++...+ +. +..++.+.+.+.+ +++.+|+.|+.++.++.... ...+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 3566888899999999999999999875421 11 2456677777754 58999999999999975421 1112
Q ss_pred ccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHH
Q psy2915 187 EDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVL 266 (883)
Q Consensus 187 ~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l 266 (883)
.+.+.++.|.++|.++|+.++..|+.+|..++...+... ..+
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--------------------------------------~~i 139 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--------------------------------------MAV 139 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH--------------------------------------HHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH--------------------------------------HHH
Confidence 245678899999999999999999999999876532211 000
Q ss_pred HHHhhcCCCChhhHHHHHHHHhHHHHHhhcC-ChhHHHHHHHHHHHHHhhCchh---HHhc--cc-ceeec-cCCCHHHH
Q psy2915 267 MKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDI---LKHE--MK-VFFVK-YNDPIYVK 338 (883)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~vr~~aL~~l~~l~~~~~~~---~~~~--~~-~~~~l-~~~~~~Ir 338 (883)
.-...+++|+.+|.+ +++++..+..++..++..+++. +... +. .+..+ ..++...+
T Consensus 140 ----------------~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~ 203 (529)
T 1jdh_A 140 ----------------RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203 (529)
T ss_dssp ----------------HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHH
T ss_pred ----------------HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHH
Confidence 012356677777753 4577777777777776544321 1111 11 11122 23455666
Q ss_pred HHHHHHHHHhcCh-hhHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCC
Q psy2915 339 LEKLDIMIRLASQ-ANIAQ-----VLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDN 412 (883)
Q Consensus 339 ~~aL~iL~~l~~~-~nv~~-----Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~ 412 (883)
..+..+|..++.. +|... .++.|...+.+.++++++.++.+++.++...++. ..
T Consensus 204 ~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------------------~~ 263 (529)
T 1jdh_A 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--------------------EG 263 (529)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--------------------SC
T ss_pred HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--------------------HH
Confidence 6777777777653 23222 4677778888889999999999999888543321 01
Q ss_pred HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHH-----HHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC-ch
Q psy2915 413 ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQ-----ELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG-NT 486 (883)
Q Consensus 413 ~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~-----~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~-~~ 486 (883)
...++..+.+.+..+++.++..+..+++.+....+.... ..++.+++.......+++++..|...+..+... ++
T Consensus 264 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence 123444455555567788888888888888654331111 234556666554333589999997666655443 22
Q ss_pred hhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccc-hhHHHHHHHHHHhhccCCchhhH----hHHHHHHhhcCCCCHH
Q psy2915 487 FYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDN-LELKKLVYLYLMNYAKSHPDMAI----MAVNTFVKDCEDSNPL 561 (883)
Q Consensus 487 ~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~-~~~kr~~yl~~~~~~~~~~~~~~----l~~n~l~kdl~~~n~~ 561 (883)
....+..+ + . ..+...+++++.+++ ..+++.+..++..+....+.... -+++.+.+-+.++++.
T Consensus 344 ~~~~~~~i---~-~-------~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 344 AEMAQNAV---R-L-------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHHHHH---H-H-------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---H-H-------cCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 11111111 1 0 123566777777765 46777777777766543222111 1345555555555566
Q ss_pred HHHHHHHHhc----------------------CCC-hhhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhh--
Q psy2915 562 IRALAVRTMG----------------------CIR-VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-- 611 (883)
Q Consensus 562 vr~~AL~~L~----------------------~i~-~~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-- 611 (883)
+|..|..+++ ++. .++... ..++.+.+++.|+++.||+.|+.++.++...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~ 492 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHH
Confidence 6554443333 321 122111 2447888899999999999999999987632
Q ss_pred cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy2915 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM 647 (883)
Q Consensus 612 ~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i 647 (883)
....+.+...++.|.+++.++|+.|+..|..+|..+
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 223333456779999999999999999999988765
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.58 E-value=1.2e-12 Score=159.84 Aligned_cols=451 Identities=12% Similarity=0.098 Sum_probs=281.2
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchh-----h--hHHHHHHHHhhcCC-CChhHHHHHHHHHHHHhhhC--cccc
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDK-----I--TEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDIN--AQLV 186 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~-----~--~~~l~~~v~~~l~d-~~~~VRk~A~~al~kl~~~~--p~~~ 186 (883)
+++.+.+-|.++++.+|..|+.+|+++...+ + .+..++.+.+.+.+ +++.+|+.|+.++.++.... ...+
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i 230 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAI 230 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 3555888888999999999999999875421 1 12456666677754 58999999999999975421 1122
Q ss_pred ccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHH
Q psy2915 187 EDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVL 266 (883)
Q Consensus 187 ~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l 266 (883)
.+.+.++.|.++|.+.++.|+..|+.+|..++...+... +.+
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~--------------------------------------~~v 272 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK--------------------------------------MAV 272 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH--------------------------------------HHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH--------------------------------------HHH
Confidence 345678999999999999999999999999986543221 000
Q ss_pred HHHhhcCCCChhhHHHHHHHHhHHHHHhhcC-ChhHHHHHHHHHHHHHhhCchh---HHhc--cc-ceeecc-CCCHHHH
Q psy2915 267 MKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDI---LKHE--MK-VFFVKY-NDPIYVK 338 (883)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~vr~~aL~~l~~l~~~~~~~---~~~~--~~-~~~~l~-~~~~~Ir 338 (883)
.-..+++.|+.+|.+ +..++..++.++..++..+++. +... +. .+.++. .++...+
T Consensus 273 ----------------~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 273 ----------------RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp ----------------HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHH
T ss_pred ----------------HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHH
Confidence 012345566666643 4466666666666665433221 1110 11 111223 3344455
Q ss_pred HHHHHHHHHhcCh-hhHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCC
Q psy2915 339 LEKLDIMIRLASQ-ANIAQ-----VLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDN 412 (883)
Q Consensus 339 ~~aL~iL~~l~~~-~nv~~-----Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~ 412 (883)
..+..+|..++.. .|... +++.|...+.+.+.++++.++.+++.++...++. ..
T Consensus 337 ~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--------------------~~ 396 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--------------------EG 396 (780)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--------------------SC
T ss_pred HHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--------------------hh
Confidence 5666777666643 34333 3577778888888999999999998887544321 01
Q ss_pred HHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchH-----HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC-ch
Q psy2915 413 ADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDT-----QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG-NT 486 (883)
Q Consensus 413 ~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~-----~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~-~~ 486 (883)
...++..+.+.+...++.+|..+..+++.+....+... ...+..+++....+...+++|..|......+... ++
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch
Confidence 12345555555566788889888888888865433211 1245566666655322348999987666655442 22
Q ss_pred hhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccch-hHHHHHHHHHHhhccCCchhhH----hHHHHHHhhcCCC---
Q psy2915 487 FYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNL-ELKKLVYLYLMNYAKSHPDMAI----MAVNTFVKDCEDS--- 558 (883)
Q Consensus 487 ~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~-~~kr~~yl~~~~~~~~~~~~~~----l~~n~l~kdl~~~--- 558 (883)
... .+..+.. ..++..+++++.+++. .+++.+..+++.+......... -+++.+.+-+.++
T Consensus 477 ~~~----~~~~v~~-------~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 477 AEM----AQNAVRL-------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHH----HHHHHHH-------TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHH-------cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 111 1111110 1235666777776654 6777766676666532211100 1233333333222
Q ss_pred -------------------CHHHHHHHHHHhcCCCh-hhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhh--
Q psy2915 559 -------------------NPLIRALAVRTMGCIRV-DKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-- 611 (883)
Q Consensus 559 -------------------n~~vr~~AL~~L~~i~~-~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-- 611 (883)
.+.++..|+.+|+++.. ++... ..++.+.+++.++++.||+.|+.++..+...
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 625 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 625 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 24566677777776532 22222 2467889999999999999999999988632
Q ss_pred cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 612 ~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
....+.+...++.|.+++.++|+.|+..|+.+|..+....|
T Consensus 626 ~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 626 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 22234445577899999999999999999999999997654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.55 E-value=6e-13 Score=151.85 Aligned_cols=380 Identities=14% Similarity=0.120 Sum_probs=245.0
Q ss_pred hhhhchhcCCCCHHHHHHHHHHhccC----Cchh---hhH--HHHHHHHhhcCCC-ChhHHHHHHHHHHHHhhhCcccc-
Q psy2915 118 VGVFVKDCEDSNPLIRALAVRTMGCI----RVDK---ITE--YLCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQLV- 186 (883)
Q Consensus 118 ~~~l~kDL~~~n~~vr~lALr~L~~i----~~~~---~~~--~l~~~v~~~l~d~-~~~VRk~A~~al~kl~~~~p~~~- 186 (883)
++.+.+.++++++.+|..|++.|.++ ..+. +.+ .+++.+.+.+.++ ++.||..|+.++.++....++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44478889999999999999998876 2222 222 5778888889888 89999999999999987554432
Q ss_pred --ccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHH
Q psy2915 187 --EDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLK 264 (883)
Q Consensus 187 --~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~ 264 (883)
.+.+.++.|.++|.++++.|+..|+.+|..+....+... .
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~--------------------------------------~ 143 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR--------------------------------------D 143 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH--------------------------------------H
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH--------------------------------------H
Confidence 235688999999999999999999999999876432211 1
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHhHHHHHhhcC--ChhHHHHHHHHHHHHHhhC-chhHHhcccceeeccCCCHHHHHHH
Q psy2915 265 VLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS--EPEVQYVALRNINLIVQKR-PDILKHEMKVFFVKYNDPIYVKLEK 341 (883)
Q Consensus 265 ~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~vr~~aL~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~Ir~~a 341 (883)
.+ .-..++++|+.++.+ ++.+|..|+.++..++... |..-..
T Consensus 144 ~~----------------~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~------------------- 188 (450)
T 2jdq_A 144 YV----------------LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA------------------- 188 (450)
T ss_dssp HH----------------HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGG-------------------
T ss_pred HH----------------HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHH-------------------
Confidence 11 012356778888763 4578888888888887643 221000
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHh
Q psy2915 342 LDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFL 421 (883)
Q Consensus 342 L~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~ 421 (883)
-+..+++.|...+.+.|++++..++.+++.++...++..... ... .++..+.
T Consensus 189 -----------~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~----------~~i~~L~ 240 (450)
T 2jdq_A 189 -----------KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-------IDA----------GVCRRLV 240 (450)
T ss_dssp -----------GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH-------HHT----------TTHHHHH
T ss_pred -----------HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH-------HHc----------CcHHHHH
Confidence 012235555556666778888888888888775433211100 000 1222333
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhh
Q psy2915 422 EGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASM 501 (883)
Q Consensus 422 ~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~ 501 (883)
+.+.+.++.+|..++.+++.+....+...+. ++.
T Consensus 241 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------------------------------~~~-- 274 (450)
T 2jdq_A 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQV--------------------------------------------ILN-- 274 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH--------------------------------------------HHT--
T ss_pred HHHCCCchhHHHHHHHHHHHHhhCChHHHHH--------------------------------------------HHH--
Confidence 3334556666666666666654322111000 000
Q ss_pred ccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHHhcCCC--
Q psy2915 502 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRTMGCIR-- 574 (883)
Q Consensus 502 ~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~L~~i~-- 574 (883)
..+...+++++.+++..+|+.+..+++.+....++... -+++.+.+-++++++.+|..|+.+|+++.
T Consensus 275 ------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 275 ------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp ------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred ------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 01234445555555556666666666655543332211 24556666777889999999999999873
Q ss_pred -hhhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc--------------cccccHHHHHHHhhcCCCh
Q psy2915 575 -VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL--------------VEDQGFLDQLKDLLSDSNP 634 (883)
Q Consensus 575 -~~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~--------------~~~~~~~~~l~~lL~D~d~ 634 (883)
+++... .+++.+.+++.++++.||+.|+.++..+....+.. +.....++.+..++.++++
T Consensus 349 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 428 (450)
T 2jdq_A 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQ 428 (450)
T ss_dssp CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 344333 36788999999999999999999999998765432 1112234667778888899
Q ss_pred hHHHHHHHHHHHHHhc
Q psy2915 635 MVVANAVAALSEMNEA 650 (883)
Q Consensus 635 ~V~~~a~~~l~~i~~~ 650 (883)
.|+..|+.++..+...
T Consensus 429 ~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 429 EIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCc
Confidence 9999999998888743
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.54 E-value=7.7e-11 Score=140.87 Aligned_cols=616 Identities=11% Similarity=0.096 Sum_probs=373.4
Q ss_pred hchhcCC-CCHHHHHHHHHHhccCCchh------hh-HHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCc------ccc
Q psy2915 121 FVKDCED-SNPLIRALAVRTMGCIRVDK------IT-EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA------QLV 186 (883)
Q Consensus 121 l~kDL~~-~n~~vr~lALr~L~~i~~~~------~~-~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p------~~~ 186 (883)
+.+-+.+ .|+.+.-.|+|+++.++... +. +.-.+.+.+.+..+++.+-.+|+.++..++.-.. +..
T Consensus 54 ~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (810)
T 3now_A 54 VASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSK 133 (810)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCC
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 5555666 88999999999999885432 11 2224557777888888899999999999887222 111
Q ss_pred cccc-----------HHHHHHHHhcCC--ChhHHHHHHHHHHhccccCCccc--cccccccCCCCcHHHHHhhccccccC
Q psy2915 187 EDQG-----------FLDQLKDLLSDS--NPMVVANAVAAILLLPRKSYWQR--NLSSRKKQICWNLPYLMNLSVIYPAW 251 (883)
Q Consensus 187 ~~~~-----------~~~~L~~lL~D~--d~~V~~~a~~~L~ei~~~~~~~~--~l~~~~~~~~w~q~~~l~l~~~~~~~ 251 (883)
+++. ++..|..++.|. ....|-+|+.+|..-.++..... .+.. .-+..++|....-.|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~l~v~~~~~~~ 208 (810)
T 3now_A 134 PDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVE-----IRGLCRLLDVCSELEDY 208 (810)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHH-----TTHHHHHHHHHTCCSSS
T ss_pred CcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhh-----HhhHHHHHHHHhcCccc
Confidence 1111 223344444454 56678889998888875442110 0000 01334445432222221
Q ss_pred CCCC---CCchH--HHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCchhHH----
Q psy2915 252 PLST---INPHT--PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILK---- 321 (883)
Q Consensus 252 ~l~~---~n~~v--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~~~~---- 321 (883)
...+ ..+.+ .+.-++-++.+.+..+.. .+.....+-..+...+. .+.+-+..|..++..+.+..++.-.
T Consensus 209 ~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~ 287 (810)
T 3now_A 209 KYESAMDITGSSSTIASVCLARIYENMYYDEA-KARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVA 287 (810)
T ss_dssp CCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH-HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred cccccCCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 0011 11122 444455567776665432 23444455555555554 4556677788888888887765422
Q ss_pred hc--cc-ceeeccCCCHHHHHHHHHHHHHhcChhhHHHH-----HHHHHHhhhhcCHHHHHHHHHHHHHHHhhc------
Q psy2915 322 HE--MK-VFFVKYNDPIYVKLEKLDIMIRLASQANIAQV-----LSELKEYATEVDVDFVRKAVRAIGRCAIKV------ 387 (883)
Q Consensus 322 ~~--~~-~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~I-----l~eL~~~~~~~d~~~r~~ai~aI~~la~k~------ 387 (883)
.. +. .+..+.+++..+++.|++.+...++....... ++.|...+.+.++.+|..++.+++.++.-+
T Consensus 288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~ 367 (810)
T 3now_A 288 REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAI 367 (810)
T ss_dssp TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSC
T ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccc
Confidence 21 23 33356788999999999999999976444331 256666677778889999999999988422
Q ss_pred hhh----HHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCc-----hHHHHHHHHH
Q psy2915 388 EQS----AERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPT-----DTQELVQQVL 458 (883)
Q Consensus 388 ~~~----~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~-----~~~~~l~~ll 458 (883)
+.. .+..++.+.++|.++ ..+.+++...+.+++.+....+. .....++.++
T Consensus 368 ~~~~~g~i~~Lv~~l~~lL~~~--------------------~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV 427 (810)
T 3now_A 368 RPFGDGAALKLAEACRRFLIKP--------------------GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALM 427 (810)
T ss_dssp CSSTTTHHHHHHHHHHHHHHCS--------------------SCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHhcCC--------------------CCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHH
Confidence 111 234555666666542 00223333333333333221110 0122344444
Q ss_pred HHhhcCCCChhhhhhhHHHHHhhcCCchhh-----------------------hhhhhhHHHHHhhccCCCcccchHHHH
Q psy2915 459 SLATQDSDNPDLRDRGFIYWRLLSTGNTFY-----------------------ILLHLTRLVIASMTVGKDVSALFPDVV 515 (883)
Q Consensus 459 ~~~~~d~~~~evrdrA~~y~~ll~~~~~~~-----------------------~~~~~l~kli~~~~~g~~~~~~~~~vi 515 (883)
+.+.++ ++.++..|...+.-+..+.+.. ...+..++-+..+.. ..+.+..+
T Consensus 428 ~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve----aGaVp~LV 501 (810)
T 3now_A 428 DLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN----EGITTALC 501 (810)
T ss_dssp HHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH----TTHHHHHH
T ss_pred HHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH----CcCHHHHH
Confidence 444332 4555555444333333221100 000112211111111 13567778
Q ss_pred HhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhh------hHH
Q psy2915 516 NCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCEDSNPLIRALAVRTMGCI---RVDKI------TEY 581 (883)
Q Consensus 516 ~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~~------~~~ 581 (883)
.++.+++...+..+..++..+... ++.... +++.|...++++++..|..|..+|+++ .+++. ...
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~ 580 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhc
Confidence 999999999999988888888643 332222 467788888899999999999999986 33443 123
Q ss_pred HHHHHHhhcCCC-ChHHHhhHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhh
Q psy2915 582 LCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQ---LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVAL 657 (883)
Q Consensus 582 l~~~l~~~l~d~-~~~VRk~A~~al~~l~~~~~~---~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~ 657 (883)
.+|++..+|.+. +...+..|+.|+..+....++ .+.+...++.|..+|.++++.|+.+|+.+++.+...++ ....
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~ 659 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKM 659 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHH
Confidence 678888888754 556677899999998765432 22334578999999999999999999999999986422 1111
Q ss_pred HHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH------HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhC
Q psy2915 658 IEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ------SICERITPRLAHANAAVVLSAVKVLMKLMEML 731 (883)
Q Consensus 658 ~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~------~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~ 731 (883)
+.-....+..|+..+...++-.|.....+|..+...++.... ..++.|..++++.+..+..+|+.++.++..
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-- 737 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-- 737 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT--
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh--
Confidence 111123556677777677777777777888777653333322 366788999999999999999999999852
Q ss_pred CCChhhHHHHHH-HhhhHHHHhcc-C---CcchHHHHHHHHHHHHhh
Q psy2915 732 PGEGDFVSTLTK-KLAPPLVTLLS-S---EPEVQYVALRNINLIVQK 773 (883)
Q Consensus 732 ~~~~~l~~~~~~-~~~~~L~~ll~-~---~~niry~aL~~l~~l~~~ 773 (883)
++++....+.. .+.++|..++. + ++++.-++++.|..+...
T Consensus 738 -~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 -AGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp -TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 33333333333 55678888875 2 467888999998888764
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.53 E-value=2.8e-12 Score=149.97 Aligned_cols=376 Identities=16% Similarity=0.178 Sum_probs=251.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhhC--cc--ccccccHHHHHHHHhcCC-ChhHHHHHHHHHHhccccCCcccc
Q psy2915 152 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQ--LVEDQGFLDQLKDLLSDS-NPMVVANAVAAILLLPRKSYWQRN 226 (883)
Q Consensus 152 l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~--p~--~~~~~~~~~~L~~lL~D~-d~~V~~~a~~~L~ei~~~~~~~~~ 226 (883)
.++.+.+.+.++++.+|..|+.++.++.... |. .+.+.+.++.|.++|.++ ++.|+..|+.+|..++...+...
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~- 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT- 166 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH-
Confidence 3556677788899999999999999997643 21 122346789999999987 89999999999999876432111
Q ss_pred ccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHH
Q psy2915 227 LSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVA 305 (883)
Q Consensus 227 l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~a 305 (883)
..+. -..++++|+.+|. .++++|..|
T Consensus 167 -------------------------------------~~~~----------------~~g~i~~Lv~lL~~~~~~vr~~A 193 (530)
T 1wa5_B 167 -------------------------------------KVVV----------------DADAVPLFIQLLYTGSVEVKEQA 193 (530)
T ss_dssp -------------------------------------HHHH----------------HTTCHHHHHHHHHHCCHHHHHHH
T ss_pred -------------------------------------HHHH----------------HCCCHHHHHHHHcCCCHHHHHHH
Confidence 1110 1235677777775 567999999
Q ss_pred HHHHHHHHhhCchh---HHhc--c-cceeeccCCCHHHHHHHHHHHHHhcChh-------hHHHHHHHHHHhhhhcCHHH
Q psy2915 306 LRNINLIVQKRPDI---LKHE--M-KVFFVKYNDPIYVKLEKLDIMIRLASQA-------NIAQVLSELKEYATEVDVDF 372 (883)
Q Consensus 306 L~~l~~l~~~~~~~---~~~~--~-~~~~~l~~~~~~Ir~~aL~iL~~l~~~~-------nv~~Il~eL~~~~~~~d~~~ 372 (883)
+.+|..++...+.. +... + ..+.++.+++..+++.++..|..++... ....+++.|...+.+.++++
T Consensus 194 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v 273 (530)
T 1wa5_B 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET 273 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHH
Confidence 99999998765432 2111 2 2333566788999999999999999543 23457788888888889999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHH
Q psy2915 373 VRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQE 452 (883)
Q Consensus 373 r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~ 452 (883)
+..++.+++.++...+..... ++.. .++..+.+.+.+.++.++..++.+++.+....+...+.
T Consensus 274 ~~~a~~~L~~L~~~~~~~~~~-------~~~~----------~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 336 (530)
T 1wa5_B 274 LVDACWAISYLSDGPQEAIQA-------VIDV----------RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV 336 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHH-------HHHT----------TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-------HHhc----------CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988653322111 1111 12333333344556666766666666654322111000
Q ss_pred HHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHH
Q psy2915 453 LVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLY 532 (883)
Q Consensus 453 ~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~ 532 (883)
++. ..+...++.++.++++.+++.+..+
T Consensus 337 --------------------------------------------~~~--------~~~l~~L~~lL~~~~~~vr~~A~~a 364 (530)
T 1wa5_B 337 --------------------------------------------VIN--------AGVLPALRLLLSSPKENIKKEACWT 364 (530)
T ss_dssp --------------------------------------------HHH--------TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred --------------------------------------------HHH--------cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 000 0123344555555556666666666
Q ss_pred HHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHHhcCCC---hh--hhhHH-----HHHHHHhhcCCCChHH
Q psy2915 533 LMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRTMGCIR---VD--KITEY-----LCEPLRKCLKDEDPYV 597 (883)
Q Consensus 533 ~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~L~~i~---~~--~~~~~-----l~~~l~~~l~d~~~~V 597 (883)
++.+....++... -+++.+.+-++++++.+|..|+.+|+++. .+ +.... +++.+..++.++++.|
T Consensus 365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 6665543333211 24556666677889999999999999873 23 33332 5688889999999999
Q ss_pred HhhHHHHHHHHHhhcccc--------------cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 598 RKTAAVCVAKLYDINAQL--------------VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 598 Rk~A~~al~~l~~~~~~~--------------~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
|..|+.++..+....+.. +.+...++.+..++.++++.|+..|..++..+...
T Consensus 445 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 999999999998865431 22344678888999999999999999999988754
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.51 E-value=3.7e-11 Score=143.56 Aligned_cols=438 Identities=13% Similarity=0.127 Sum_probs=285.4
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCchh-----hhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhh---Ccc--cc
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDK-----ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI---NAQ--LV 186 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~-----~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~---~p~--~~ 186 (883)
.++.+.+-++|+++.++..|+.+++...+.. +.+.-.+.+..++.++++.+|..|+.+++|+... +|. .+
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 3445788889999999999999998876532 2233347788888888899999999999999742 222 12
Q ss_pred cc---ccHHHHHHHHhcCC--ChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHH
Q psy2915 187 ED---QGFLDQLKDLLSDS--NPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTP 261 (883)
Q Consensus 187 ~~---~~~~~~L~~lL~D~--d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~ 261 (883)
.+ ..+++.+.++|.++ |+.++..|+.+|..+........
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~------------------------------------ 414 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE------------------------------------ 414 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH------------------------------------
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH------------------------------------
Confidence 11 23567788888877 99999999999999975431111
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHHHHHHHHHhhCch------h------HHhccccee
Q psy2915 262 LLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD------I------LKHEMKVFF 328 (883)
Q Consensus 262 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL~~l~~l~~~~~~------~------~~~~~~~~~ 328 (883)
.+. .-..++++|+.+|+ .++.++|.|+..+..++..++. + ...|.....
T Consensus 415 ---~lv---------------~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~ 476 (810)
T 3now_A 415 ---KLI---------------EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEH 476 (810)
T ss_dssp ---HHH---------------HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSS
T ss_pred ---HHH---------------HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccc
Confidence 000 01357788888885 5678999999999999985421 1 111111112
Q ss_pred eccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhh
Q psy2915 329 VKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAE 408 (883)
Q Consensus 329 ~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~ 408 (883)
++.+ +..++.+.-.+ ++. ..++.|...+++.+++++..++.+|+.++.. ++.... +++ .+
T Consensus 477 ~ld~-~~~v~~r~~~V----vea----GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~----Vv~---~G--- 536 (810)
T 3now_A 477 ELDD-VDFINKRITVL----ANE----GITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK----VVQ---EG--- 536 (810)
T ss_dssp CHHH-HHHHHHHHHHH----HHT----THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH----HHH---TT---
T ss_pred cccc-HHHHHHHHHHH----HHC----cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH----HHH---CC---
Confidence 2322 23444332111 111 2566777777788999999999999999853 322211 111 10
Q ss_pred hhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCch-------HHHHHHHHHHHhhcCCCChhhhhhhHHHHHhh
Q psy2915 409 RIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTD-------TQELVQQVLSLATQDSDNPDLRDRGFIYWRLL 481 (883)
Q Consensus 409 ~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~-------~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll 481 (883)
.+..++.-+...+..+|..+..|++++.....++ ..+.++++.+++..+. +...+..|...+.-+
T Consensus 537 -------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~NL 608 (810)
T 3now_A 537 -------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALTNL 608 (810)
T ss_dssp -------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence 2222222233445678888899999886543221 2456778888776442 333333454444433
Q ss_pred cCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcC
Q psy2915 482 STGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCE 556 (883)
Q Consensus 482 ~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~ 556 (883)
....+ +.-..++. ..++..+++++.+++..+++.+..+++.+....+.... -+++.+.+.+.
T Consensus 609 a~~~d-----~~~~~Ii~--------aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~ 675 (810)
T 3now_A 609 ASMNE-----SVRQRIIK--------EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675 (810)
T ss_dssp TTSCH-----HHHHHHHH--------TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG
T ss_pred hcCCH-----HHHHHHHH--------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc
Confidence 33321 11112221 13467778888888888888888887777543222111 14567778889
Q ss_pred CCCHHHHHHHHHHhcCCCh--hhhhH------HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc---cccccccHHHHH
Q psy2915 557 DSNPLIRALAVRTMGCIRV--DKITE------YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA---QLVEDQGFLDQL 625 (883)
Q Consensus 557 ~~n~~vr~~AL~~L~~i~~--~~~~~------~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~---~~~~~~~~~~~l 625 (883)
++++.+|..|..+|+++.. ++..+ ..++.+.+++.++++.+|+.|+.++.++...++ ..+.+...++.|
T Consensus 676 s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L 755 (810)
T 3now_A 676 DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 9999999999999999854 44333 355788899999999999999999999987544 233356788999
Q ss_pred HHhhcCC---ChhHHHHHHHHHHHHHh
Q psy2915 626 KDLLSDS---NPMVVANAVAALSEMNE 649 (883)
Q Consensus 626 ~~lL~D~---d~~V~~~a~~~l~~i~~ 649 (883)
..++.+. ++.++..|+.+|..+.+
T Consensus 756 ~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 756 SGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 9999754 78999999999888875
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=7.7e-11 Score=137.36 Aligned_cols=475 Identities=14% Similarity=0.113 Sum_probs=277.4
Q ss_pred chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccc---cccccHHHHHHHHhc-CCChhHHHHHHHHHHhcccc
Q psy2915 145 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLS-DSNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 145 ~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~---~~~~~~~~~L~~lL~-D~d~~V~~~a~~~L~ei~~~ 220 (883)
.+++....++.+.+++.++++.||..|+.++.++....+.. +..++.++.|.++|. ++|+.++..|+.+|..+...
T Consensus 11 ~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 34455556778888899999999999999999997644321 222356788888876 45899999999999887653
Q ss_pred CCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CCh
Q psy2915 221 SYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEP 299 (883)
Q Consensus 221 ~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~ 299 (883)
.. . ...+. -...+++|+.+|+ +++
T Consensus 91 ~~-~--------------------------------------~~~i~----------------~~g~i~~L~~lL~~~~~ 115 (529)
T 1jdh_A 91 RE-G--------------------------------------LLAIF----------------KSGGIPALVKMLGSPVD 115 (529)
T ss_dssp HH-H--------------------------------------HHHHH----------------HTTHHHHHHHHTTCSCH
T ss_pred ch-h--------------------------------------HHHHH----------------HcCCHHHHHHHHcCCCH
Confidence 21 0 01111 1135678888885 456
Q ss_pred hHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHH
Q psy2915 300 EVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRA 379 (883)
Q Consensus 300 ~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~a 379 (883)
.++..|+..+..++...+..-.. ++ -...++.|.+.+.+.+++++..+..+
T Consensus 116 ~v~~~a~~~L~~l~~~~~~~~~~-------------------------i~----~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 116 SVLFYAITTLHNLLLHQEGAKMA-------------------------VR----LAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHH-------------------------HH----HHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHH-------------------------HH----HcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 88888988888888764321100 00 01245556666666677777777777
Q ss_pred HHHHHhhchhhHH-----HHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchH----
Q psy2915 380 IGRCAIKVEQSAE-----RCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDT---- 450 (883)
Q Consensus 380 I~~la~k~~~~~~-----~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~---- 450 (883)
++.++...+.... ..++.+++++.+. .+...+..+..++..+... +...
T Consensus 167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~---------------------~~~~~~~~a~~~L~~l~~~-~~~~~~~~ 224 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGGPQALVNIMRTY---------------------TYEKLLWTTSRVLKVLSVC-SSNKPAIV 224 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHTTS-TTHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC---------------------ChHHHHHHHHHHHHHHhcC-cccHHHHH
Confidence 7777653332211 2334444444431 2223333333444433321 1111
Q ss_pred -HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHH
Q psy2915 451 -QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLV 529 (883)
Q Consensus 451 -~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~ 529 (883)
...++.+++...++ +++++..+...+.-+....... .......+.+++++.+++..++..+
T Consensus 225 ~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~i~~L~~ll~~~~~~v~~~a 286 (529)
T 1jdh_A 225 EAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQ----------------EGMEGLLGTLVQLLGSDDINVVTCA 286 (529)
T ss_dssp HTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTC----------------SCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCChhh----------------HHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 12345555555443 6888887765554444332100 1123456667788888888888888
Q ss_pred HHHHHhhccCCchhhH-----hHHHHHHhhcCC--CCHHHHHHHHHHhcCCChh--h-------hhH-HHHHHHHhhcCC
Q psy2915 530 YLYLMNYAKSHPDMAI-----MAVNTFVKDCED--SNPLIRALAVRTMGCIRVD--K-------ITE-YLCEPLRKCLKD 592 (883)
Q Consensus 530 yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~--~n~~vr~~AL~~L~~i~~~--~-------~~~-~l~~~l~~~l~d 592 (883)
..++..+...+++... -+++.+.+-+.+ +++.+|..|+++|+++... + +.+ ..++.+.+++.+
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~ 366 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc
Confidence 8888888665543221 134555555543 4589999999999987431 1 111 256788889988
Q ss_pred CC-hHHHhhHHHHHHHHHhhcc--cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC-CCchhhHHhcHHHHHHH
Q psy2915 593 ED-PYVRKTAAVCVAKLYDINA--QLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS-TSGVALIEMNAQTINKL 668 (883)
Q Consensus 593 ~~-~~VRk~A~~al~~l~~~~~--~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~-~~~~~~~~l~~~~~~~L 668 (883)
++ +.||+.|+.++.++....+ ..+.+...++.|.++|.++++.|+..|+-++...+-.. ..++. +
T Consensus 367 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~---i-------- 435 (529)
T 1jdh_A 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE---I-------- 435 (529)
T ss_dssp TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHH---H--------
T ss_pred ccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHH---H--------
Confidence 76 6999999999998875221 12224567889999999889999988877666521110 00000 0
Q ss_pred HHHcccCChhhHHHHHHHHhccCCCChHHH-----HHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH
Q psy2915 669 LTALNECTEWGQVFILDSLSNYSPKDDREA-----QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK 743 (883)
Q Consensus 669 ~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~-----~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~ 743 (883)
....+..|..+... ++.. ...++.+..++.+.++.|+..++.++.++. .+++......+
T Consensus 436 -----------~~~~~~al~~L~~~-~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~----~~~~~~~~i~~ 499 (529)
T 1jdh_A 436 -----------VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA----QDKEAAEAIEA 499 (529)
T ss_dssp -----------HHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT----TSHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhcC-chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 01122233332221 1111 134678889999999999999999999884 33333333222
Q ss_pred -HhhhHHHHhcc-CCcchHHHHHHHHHHH
Q psy2915 744 -KLAPPLVTLLS-SEPEVQYVALRNINLI 770 (883)
Q Consensus 744 -~~~~~L~~ll~-~~~niry~aL~~l~~l 770 (883)
...+.|..++. .++++++.+...+..+
T Consensus 500 ~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 500 EGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 34466777776 4778888888877654
No 28
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.48 E-value=1.2e-11 Score=141.40 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=150.4
Q ss_pred hhchhcCCCCHHHHHHHHHHhccCCc---hhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcc-----------c
Q psy2915 120 VFVKDCEDSNPLIRALAVRTMGCIRV---DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ-----------L 185 (883)
Q Consensus 120 ~l~kDL~~~n~~vr~lALr~L~~i~~---~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~-----------~ 185 (883)
++...+.++|+.+|..|-..|..+.. |+....+...+.. .+.++.||..|+..+.++...+.. .
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 36667889999999999999988654 4444444433221 224789999999999998654310 0
Q ss_pred ccc---ccHHHHHHHHhcCCChhHHHHHHHHHHhccccC-CccccccccccCCCCcHHHHHhhccccccCCCCCCCchHH
Q psy2915 186 VED---QGFLDQLKDLLSDSNPMVVANAVAAILLLPRKS-YWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTP 261 (883)
Q Consensus 186 ~~~---~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~-~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~ 261 (883)
+.+ ..+.+.+.+.|.++++.+ ..+..++.++.... |.
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-------------------------------------- 123 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-------------------------------------- 123 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--------------------------------------
Confidence 110 112233444445555555 55555555554321 10
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-C--ChhHHHHHHHHHHHHHhhC-chhHHhcc----c-ceeeccC
Q psy2915 262 LLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-S--EPEVQYVALRNINLIVQKR-PDILKHEM----K-VFFVKYN 332 (883)
Q Consensus 262 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~--~~~vr~~aL~~l~~l~~~~-~~~~~~~~----~-~~~~l~~ 332 (883)
..++ .+.+.|...++ + ++++|..|+..+..++... +..+.++. . .+.++.+
T Consensus 124 ---------~~w~-----------~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 124 ---------NQWP-----------ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK 183 (462)
T ss_dssp ---------TCCT-----------THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHST
T ss_pred ---------cccH-----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCC
Confidence 0011 23444455553 3 6689999999999998876 55555542 2 2235666
Q ss_pred C--CHHHHHHHHHHHHHhcC--hhh------HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q psy2915 333 D--PIYVKLEKLDIMIRLAS--QAN------IAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 402 (883)
Q Consensus 333 ~--~~~Ir~~aL~iL~~l~~--~~n------v~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL 402 (883)
+ +..||..|+..+..+.. +++ ...+++.|.....+.++++|..+++.++.++.+++.....++.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~------ 257 (462)
T 1ibr_B 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG------ 257 (462)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 6 68899999999987543 111 2346777777778889999999999999999877653111111
Q ss_pred HhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q psy2915 403 QTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKL 442 (883)
Q Consensus 403 ~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl 442 (883)
. .++..+...+.+.++.+|..++..+..+
T Consensus 258 ---------~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~ 286 (462)
T 1ibr_B 258 ---------P--ALFAITIEAMKSDIDEVALQGIEFWSNV 286 (462)
T ss_dssp ---------T--THHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred ---------H--HHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0 2333334444567788888877766655
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.48 E-value=9.4e-11 Score=140.35 Aligned_cols=472 Identities=11% Similarity=0.075 Sum_probs=280.6
Q ss_pred hhhhchhcCCCCHHHHHHHHHHhccCCchh-----hh--HHHHHHHHhhcCC-CChhHHHHHHHHHHHHhhhCc--cccc
Q psy2915 118 VGVFVKDCEDSNPLIRALAVRTMGCIRVDK-----IT--EYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDINA--QLVE 187 (883)
Q Consensus 118 ~~~l~kDL~~~n~~vr~lALr~L~~i~~~~-----~~--~~l~~~v~~~l~d-~~~~VRk~A~~al~kl~~~~p--~~~~ 187 (883)
++.+.+-|+++++.+|..|+.+|+++.... +. +..++.+.+.+.+ +++.+|+.|+.++..+..... ..+.
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 566888899999999999999999875422 11 2456677777765 489999999999997654211 1122
Q ss_pred cccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHH
Q psy2915 188 DQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLM 267 (883)
Q Consensus 188 ~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~ 267 (883)
+.+.++.|.++|.++++.++..|+.+|..++...+... ..+
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~--------------------------------------~~v- 136 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK--------------------------------------MAV- 136 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH--------------------------------------HHH-
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH--------------------------------------HHH-
Confidence 34678899999999999999999999999876532111 000
Q ss_pred HHhhcCCCChhhHHHHHHHHhHHHHHhhcC-ChhHHHHHHHHHHHHHhhCchh---HHhc--cc-ceeecc-CCCHHHHH
Q psy2915 268 KLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDI---LKHE--MK-VFFVKY-NDPIYVKL 339 (883)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~vr~~aL~~l~~l~~~~~~~---~~~~--~~-~~~~l~-~~~~~Ir~ 339 (883)
.-...++.|+.+|.+ ++.++..++.++..++...++. +... +. .+.++. .++..++.
T Consensus 137 ---------------~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 201 (644)
T 2z6h_A 137 ---------------RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201 (644)
T ss_dssp ---------------HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH
T ss_pred ---------------HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHH
Confidence 012356677777753 4567777777777777644321 1111 11 111223 33466788
Q ss_pred HHHHHHHHhcCh-hhHHH-----HHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCH
Q psy2915 340 EKLDIMIRLASQ-ANIAQ-----VLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNA 413 (883)
Q Consensus 340 ~aL~iL~~l~~~-~nv~~-----Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~ 413 (883)
.++.+|..++.. .|... .++.|..++.+.+.++++.++.+++.++...+.. ...
T Consensus 202 ~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--------------------~~~ 261 (644)
T 2z6h_A 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--------------------EGM 261 (644)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--------------------CSC
T ss_pred HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--------------------hhh
Confidence 889998888753 33333 4667778888888999999999998887533221 011
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHH-----HHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC-chh
Q psy2915 414 DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQ-----ELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG-NTF 487 (883)
Q Consensus 414 ~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~-----~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~-~~~ 487 (883)
..++..+...+..+++.++..+..++..+....+...+ ..+..+++...+..+.++++..|......+... ++.
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~ 341 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 341 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH
Confidence 13444444445566788888888888877654322111 135556666555322478888887655555432 211
Q ss_pred hhhhhhhHHHHHhhccCCCcccchHHHHHhhcccc-hhHHHHHHHHHHhhccCCchhhH----hHHHHHHhhcCCCCHHH
Q psy2915 488 YILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDN-LELKKLVYLYLMNYAKSHPDMAI----MAVNTFVKDCEDSNPLI 562 (883)
Q Consensus 488 ~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~-~~~kr~~yl~~~~~~~~~~~~~~----l~~n~l~kdl~~~n~~v 562 (883)
.. .+..+.. ..++..+++++.+++ ..+++.+..++..+......... -+++.+.+-+.++++.+
T Consensus 342 ~~----~q~~v~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 342 EM----AQNAVRL-------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HH----HHHHHHH-------TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHH-------ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhh
Confidence 11 0110000 123455566666553 45666665555555433221111 13334444444445555
Q ss_pred HHHHHHHhcC--CChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhc--ccccccccHHHHHHHhhcCCChhHHH
Q psy2915 563 RALAVRTMGC--IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN--AQLVEDQGFLDQLKDLLSDSNPMVVA 638 (883)
Q Consensus 563 r~~AL~~L~~--i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~--~~~~~~~~~~~~l~~lL~D~d~~V~~ 638 (883)
|..|..++++ +.+ ...+..|+..|+.++..+.+.. ...+.+...++.|.++|.+.++.|+.
T Consensus 411 r~~a~~al~n~~~~~---------------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 475 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVE---------------GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475 (644)
T ss_dssp TTC----------CC---------------SSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred hhHhhhccccchhcc---------------cccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHH
Confidence 5554444443 100 0123445666666666554321 11222345678889999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHH
Q psy2915 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVL 718 (883)
Q Consensus 639 ~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~ 718 (883)
.|+.+|..+... + . ....+. + ...++.|..++.+.|+.|+.
T Consensus 476 ~a~~aL~~l~~~-~----------~-~~~~i~--------------~-------------~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 476 VAAGVLCELAQD-K----------E-AAEAIE--------------A-------------EGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp HHHHHHHHHHTS-H----------H-HHHHHH--------------H-------------TTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcC-H----------H-HHHHHH--------------H-------------cCChhHHHHHHcCCCHHHHH
Confidence 999999888743 1 1 111111 0 12367788888999999999
Q ss_pred HHHHHHHHhh
Q psy2915 719 SAVKVLMKLM 728 (883)
Q Consensus 719 eai~~i~~~~ 728 (883)
.|+.++..+.
T Consensus 517 ~A~~aL~~l~ 526 (644)
T 2z6h_A 517 YAAAVLFRMS 526 (644)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.48 E-value=1.7e-11 Score=139.73 Aligned_cols=332 Identities=15% Similarity=0.170 Sum_probs=235.1
Q ss_pred HhHHHHHhhc-CChhHHHHHHHHHHHHHh--hCch---hHHh-c-cc-ceeeccCC-CHHHHHHHHHHHHHhcC--hhhH
Q psy2915 287 LAPPLVTLLS-SEPEVQYVALRNINLIVQ--KRPD---ILKH-E-MK-VFFVKYND-PIYVKLEKLDIMIRLAS--QANI 354 (883)
Q Consensus 287 ~~~~L~~lL~-~~~~vr~~aL~~l~~l~~--~~~~---~~~~-~-~~-~~~~l~~~-~~~Ir~~aL~iL~~l~~--~~nv 354 (883)
.++.|+..|+ +++.+|..|+..+.+++. ..|. .+.. . +. .+.++.++ +..+|..|+.+|..++. +++.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3677777774 567899999999999875 2332 1222 1 22 23356666 89999999999999986 3443
Q ss_pred H-----HHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhc-CCC
Q psy2915 355 A-----QVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFH-DEN 428 (883)
Q Consensus 355 ~-----~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~-~~~ 428 (883)
. .+++.|...+.+.++++|..++.+++.++...+......+ .. .++..+.+.+. +.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~-------~~----------~~i~~L~~~l~~~~~ 163 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL-------DC----------NILPPLLQLFSKQNR 163 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-------HT----------TCHHHHHHHTTSCCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH-------HC----------CCHHHHHHHhcCCCC
Confidence 3 3678888888889999999999999999975543221111 11 12233333333 367
Q ss_pred HHHHHHHHHHHHHHhhcC-Cc----hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhcc
Q psy2915 429 TQVQLQLLTAIVKLFLKR-PT----DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTV 503 (883)
Q Consensus 429 ~~vr~~~L~al~Kl~~~~-~~----~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~ 503 (883)
..+|..++.+++.+.... |. .....++.+++...+ .|++++..|...+..+...... ....++.
T Consensus 164 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~---- 232 (450)
T 2jdq_A 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV--SDTDVLADACWALSYLSDGPND-----KIQAVID---- 232 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHTSSSHH-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHCCCcH-----HHHHHHH----
Confidence 899999999999987543 21 134566777776654 3789999887766666554221 1111110
Q ss_pred CCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hh
Q psy2915 504 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRTMGCIR--VD 576 (883)
Q Consensus 504 g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~ 576 (883)
..++..+++++.++++.++..+..+++.+....++... -+++.+.+-++++++.+|..|+.+|+++. .+
T Consensus 233 ----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~ 308 (450)
T 2jdq_A 233 ----AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR 308 (450)
T ss_dssp ----TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred ----cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 23567778888888888888888888888766554321 26778888999999999999999999885 33
Q ss_pred hhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhh-cccccc---cccHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy2915 577 KITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-NAQLVE---DQGFLDQLKDLLSDSNPMVVANAVAALSEM 647 (883)
Q Consensus 577 ~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-~~~~~~---~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i 647 (883)
+..+ .++|.+.+++.|+++.||+.|+.+++++... .|+... +...++.|.+++.++++.|+..|+.++..+
T Consensus 309 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3322 4678888999999999999999999999875 333221 345789999999999999999999999999
Q ss_pred Hhc
Q psy2915 648 NEA 650 (883)
Q Consensus 648 ~~~ 650 (883)
...
T Consensus 389 ~~~ 391 (450)
T 2jdq_A 389 LRL 391 (450)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.47 E-value=1.6e-11 Score=143.44 Aligned_cols=375 Identities=14% Similarity=0.168 Sum_probs=246.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhhCc-c---ccccccHHHHHHHHhcCCC-hhHHHHHHHHHHhccccCCccccc
Q psy2915 153 CEPLRKCLKDEDPYVRKTAAVCVAKLYDINA-Q---LVEDQGFLDQLKDLLSDSN-PMVVANAVAAILLLPRKSYWQRNL 227 (883)
Q Consensus 153 ~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p-~---~~~~~~~~~~L~~lL~D~d-~~V~~~a~~~L~ei~~~~~~~~~l 227 (883)
++.+.+.+.++++.+|..|+.++.++....+ + .+.+.+.++.|.++|.+++ +.++..|+.+|..++...+...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~-- 153 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT-- 153 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--
Confidence 4566677888899999999999999976543 1 1223467899999998876 9999999999999886432211
Q ss_pred cccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhhc-CChhHHHHHH
Q psy2915 228 SSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVAL 306 (883)
Q Consensus 228 ~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~vr~~aL 306 (883)
..+ .-..++++|+.+|. .++++|..|+
T Consensus 154 ------------------------------------~~~----------------~~~g~i~~L~~lL~~~~~~v~~~a~ 181 (528)
T 4b8j_A 154 ------------------------------------KVV----------------IDHGAVPIFVKLLGSSSDDVREQAV 181 (528)
T ss_dssp ------------------------------------HHH----------------HHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred ------------------------------------HHH----------------HhCCcHHHHHHHhcCCCHHHHHHHH
Confidence 111 11246778888886 4678999999
Q ss_pred HHHHHHHhhCchh---HHhc--c-cceeec-cCCCHHHHHHHHHHHHHhcChh------hHHHHHHHHHHhhhhcCHHHH
Q psy2915 307 RNINLIVQKRPDI---LKHE--M-KVFFVK-YNDPIYVKLEKLDIMIRLASQA------NIAQVLSELKEYATEVDVDFV 373 (883)
Q Consensus 307 ~~l~~l~~~~~~~---~~~~--~-~~~~~l-~~~~~~Ir~~aL~iL~~l~~~~------nv~~Il~eL~~~~~~~d~~~r 373 (883)
.++..++...+.. +..+ + ..+.++ .+++..+++.++.+|..++... -+..+++.|...+.+.+++++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 261 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVL 261 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999998766542 2221 2 233345 5778999999999999998752 234477888888888899999
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHH
Q psy2915 374 RKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQEL 453 (883)
Q Consensus 374 ~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~ 453 (883)
..++.+++.++...+..... + +.. .++..+.+.+...++.++..++.+++.+....+...+.+
T Consensus 262 ~~a~~aL~~l~~~~~~~~~~----~---~~~----------g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDKIQA----V---IEA----------GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHHHHHHTSSCHHHHHH----H---HHT----------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH----H---HHc----------CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988543221111 1 110 123333344445566777777777776644322111110
Q ss_pred HHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhccc-chhHHHHHHHH
Q psy2915 454 VQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTD-NLELKKLVYLY 532 (883)
Q Consensus 454 l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~-~~~~kr~~yl~ 532 (883)
+ . ..+...++.++.+. +..+++.+..+
T Consensus 325 ~--------------------------------------------~--------~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 325 I--------------------------------------------D--------HQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp H--------------------------------------------T--------TTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred H--------------------------------------------H--------hhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 0 0 01123333444444 44444444444
Q ss_pred HHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhHH-----HHHHHHhhcCCCChHHHh
Q psy2915 533 LMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRTMGCIRV---DKITEY-----LCEPLRKCLKDEDPYVRK 599 (883)
Q Consensus 533 ~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~---~~~~~~-----l~~~l~~~l~d~~~~VRk 599 (883)
++.+....++... -+++.+.+-++++++.+|..|+.+|+++.. ++.... +++.+..++.++++.|+.
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 4444333222111 134556666677789999999999988733 444443 567888999999999999
Q ss_pred hHHHHHHHHHhhccc--------------ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 600 TAAVCVAKLYDINAQ--------------LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 600 ~A~~al~~l~~~~~~--------------~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
.|+.++.++.+..+. .+.+...++.+..+..++++.|+..|...+..+...
T Consensus 433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 433 VCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 999999999876543 233344567788888899999999999999888754
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.43 E-value=3.4e-11 Score=140.70 Aligned_cols=376 Identities=16% Similarity=0.145 Sum_probs=260.9
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhcCC-chH-----HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhh
Q psy2915 421 LEGFHDENTQVQLQLLTAIVKLFLKRP-TDT-----QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLT 494 (883)
Q Consensus 421 ~~~~~~~~~~vr~~~L~al~Kl~~~~~-~~~-----~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l 494 (883)
.+.+..+++.+|..++.++.++..... ... ...++.+++...++ .++++|..|...+.-+..+.... .
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~-----~ 166 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQ-----T 166 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHH-----H
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHH-----H
Confidence 334455678899999999999876531 111 23466666666554 37999999987777665542111 1
Q ss_pred HHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHH
Q psy2915 495 RLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRT 569 (883)
Q Consensus 495 ~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~ 569 (883)
..++. ..+...+++++.+++..++..+..+++.+....++... -+++.+.+.++++++.+|..|+.+
T Consensus 167 ~~~~~--------~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 238 (530)
T 1wa5_B 167 KVVVD--------ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238 (530)
T ss_dssp HHHHH--------TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHH
T ss_pred HHHHH--------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHH
Confidence 11110 23567778888888999999999999888766544322 256788888889999999999999
Q ss_pred hcCCCh-------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHH
Q psy2915 570 MGCIRV-------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVAN 639 (883)
Q Consensus 570 L~~i~~-------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~ 639 (883)
|+++.. ......+++.+.+++.++++.||..|+.++..+....++. +.+...++.|..+|.++++.|+..
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~ 318 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence 887632 2234557888999999999999999999999998654432 222357799999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcCCCh
Q psy2915 640 AVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAHANA 714 (883)
Q Consensus 640 a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~~~~ 714 (883)
|+.++..++...+..... -+....+..|+..+.+.++..+...+.+|..++...++... .+++.+..++++.+.
T Consensus 319 a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 319 ALRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp HHHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 999999998643211110 11124556777777777777888899999998876554433 356788888888899
Q ss_pred HHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchh--------------H
Q psy2915 715 AVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDI--------------L 778 (883)
Q Consensus 715 aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~--------------~ 778 (883)
.|+.+|+.++.+++...+..++.....+. .+.++|+.++. .+++++..++..+..++...+.. +
T Consensus 398 ~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l 477 (530)
T 1wa5_B 398 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHH
Confidence 99999999999996432221123233322 47778888886 57889999999999888754331 1
Q ss_pred hhc--cceeE-EccCCCHHHHHHHHHHHHHhccccc
Q psy2915 779 KHE--MKVFF-VKYNDPIYVKLEKLDIMIRLASQAN 811 (883)
Q Consensus 779 ~~~--~~~~~-~l~~dd~~Ir~~~l~lL~~l~~~~N 811 (883)
.+. ++.+. ...+++..|+.++..+|-.+...+.
T Consensus 478 ~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 478 EKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 111 22222 3445588888888888887776544
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.38 E-value=2.4e-11 Score=129.52 Aligned_cols=253 Identities=16% Similarity=0.104 Sum_probs=186.6
Q ss_pred chHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh-hhhhHHHHHHHH-
Q psy2915 510 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV-DKITEYLCEPLR- 587 (883)
Q Consensus 510 ~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~-~~~~~~l~~~l~- 587 (883)
....+++.+.++++.+|..+..+++.++.. -+++.+.+.++|+++.+|..|+.+|+.++. ++..+.+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQ------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCc------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 356678888899999998888888887632 256788888999999999999999999974 445555666665
Q ss_pred hhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHH
Q psy2915 588 KCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINK 667 (883)
Q Consensus 588 ~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~ 667 (883)
.+++|+++.||..|+.+++++....|... +..++.+..++.|+++.||.+|+.++..+... ..+..
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~--~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------------~~~~~ 163 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNPIYS--PKIVEQSQITAFDKSTNVRRATAFAISVINDK------------ATIPL 163 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCccc--HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------------HHHHH
Confidence 46789999999999999999976554332 35678889999999999999999999988742 23446
Q ss_pred HHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhh
Q psy2915 668 LLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAP 747 (883)
Q Consensus 668 L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~ 747 (883)
|.+.+.+.+++.+...+..|..++..++ ..++.+...+++.++.|+.+|+.++..+. . +. ..+
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~-~~--------~~~ 226 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D-KR--------VLS 226 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C-GG--------GHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C-Hh--------hHH
Confidence 6667778899999999999998876554 66788888899999999999999999883 2 22 444
Q ss_pred HHHHhccCCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHH
Q psy2915 748 PLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMI 804 (883)
Q Consensus 748 ~L~~ll~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~ 804 (883)
.|+.++.+ +++|..+...+..+.. +.. .+.+..+. ..+++..++..+++.|.
T Consensus 227 ~L~~~l~d-~~vr~~a~~aL~~i~~--~~~-~~~L~~~l-~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 227 VLCDELKK-NTVYDDIIEAAGELGD--KTL-LPVLDTML-YKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTS-SSCCHHHHHHHHHHCC--GGG-HHHHHHHH-TTSSCCHHHHHHHHHHT
T ss_pred HHHHHhcC-ccHHHHHHHHHHhcCc--hhh-hHHHHHHH-hcCCCcHHHHHHHHHhh
Confidence 55555543 6699998888887754 222 22221110 12346667777777654
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.38 E-value=3.9e-11 Score=127.83 Aligned_cols=249 Identities=16% Similarity=0.137 Sum_probs=176.2
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHH
Q psy2915 418 ESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLV 497 (883)
Q Consensus 418 ~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kl 497 (883)
..+.+.+.++++.+|..++.+++++. ....+..++..+.++ ++.+|..|...+.-++...+. +..
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~------~~~- 90 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC------EDN- 90 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT------HHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc------chH-
Confidence 34455567789999999999999883 234566666665543 799999988666555432210 000
Q ss_pred HHhhccCCCcccchHHHH--HhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh
Q psy2915 498 IASMTVGKDVSALFPDVV--NCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV 575 (883)
Q Consensus 498 i~~~~~g~~~~~~~~~vi--~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~ 575 (883)
..+.+ .++.+++..+|..+..+++.++...+....-+++.+.+.++|+++.+|..|+.+|+.+++
T Consensus 91 -------------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 91 -------------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp -------------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred -------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 11112 235677888999988898888754443334567888899999999999999999999998
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCch
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV 655 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~ 655 (883)
++. ++.+.+++.|+++.||..|+.+++++.... +..++.+..++.|+++.||..|+.+|..+...
T Consensus 158 ~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~----- 222 (280)
T 1oyz_A 158 KAT----IPLLINLLKDPNGDVRNWAAFAININKYDN------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK----- 222 (280)
T ss_dssp -CC----HHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG-----
T ss_pred HHH----HHHHHHHHcCCCHHHHHHHHHHHHhhccCc------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH-----
Confidence 764 446677889999999999999999873222 34568899999999999999999999998732
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcC-CChHHHHHHHHHH
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAH-ANAAVVLSAVKVL 724 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~-~~~aV~~eai~~i 724 (883)
..+..|.+.+.+.+ .+...++.|+.++.. ..++.+...+++ .++.++-+++..+
T Consensus 223 -------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 223 -------RVLSVLCDELKKNT--VYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp -------GGHHHHHHHHTSSS--CCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -------hhHHHHHHHhcCcc--HHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 33445666665533 667788888888763 446777777754 4556666666554
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.38 E-value=1.2e-10 Score=135.83 Aligned_cols=374 Identities=17% Similarity=0.181 Sum_probs=257.1
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhcCC-chH-----HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhh
Q psy2915 420 FLEGFHDENTQVQLQLLTAIVKLFLKRP-TDT-----QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHL 493 (883)
Q Consensus 420 l~~~~~~~~~~vr~~~L~al~Kl~~~~~-~~~-----~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~ 493 (883)
+.+.+..+++.+|..++.++.++....+ +.. ...++.+++...++ +++++|..|...+.-+..+....
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~----- 152 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSEN----- 152 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHH-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHH-----
Confidence 3344455678899999999999876543 211 13456666666654 35999999987777666542211
Q ss_pred hHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhc-CCCCHHHHHHHH
Q psy2915 494 TRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDC-EDSNPLIRALAV 567 (883)
Q Consensus 494 l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl-~~~n~~vr~~AL 567 (883)
...++. ..+...+++++.+++..++..+..+++.+....++.... +++.+.+.+ .++++.++..|+
T Consensus 153 ~~~~~~--------~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 153 TKVVID--------HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp HHHHHH--------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHHHh--------CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHH
Confidence 111111 134667788888888899988888888887655542222 466788888 678899999999
Q ss_pred HHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHH
Q psy2915 568 RTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVA 638 (883)
Q Consensus 568 ~~L~~i~~------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~ 638 (883)
.+|+++.. ......+++.+.+++.++++.||..|+.++..+....++. +.+...++.|..+|.++++.|+.
T Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~ 304 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304 (528)
T ss_dssp HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHH
Confidence 99987632 2344557888999999999999999999999987654432 22345789999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccC-ChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcCC
Q psy2915 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC-TEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAHA 712 (883)
Q Consensus 639 ~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~-~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~~ 712 (883)
.|+.+|..++...+.... ..+....+..|.+.+... ++..+.....+|..++..+++... .+++.+..++.+.
T Consensus 305 ~a~~~L~nl~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~ 383 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQ-CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA 383 (528)
T ss_dssp HHHHHHHHHTTSCHHHHH-HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 999999999864321111 111123455667777677 788888899999888765554333 3467888888888
Q ss_pred ChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch--------------
Q psy2915 713 NAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD-------------- 776 (883)
Q Consensus 713 ~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~-------------- 776 (883)
+..|+.+|+.++.+++.. ++++....+++ .+.++|+.++. .+++++..++..+..++...+.
T Consensus 384 ~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 461 (528)
T 4b8j_A 384 EFDIKKEAAWAISNATSG--GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQ 461 (528)
T ss_dssp CHHHHHHHHHHHHHHHHH--SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHH
Confidence 999999999999998642 12333333322 56778888887 5788999999999998875433
Q ss_pred hHhhc--ccee-EEccCCCHHHHHHHHHHHHHhcccc
Q psy2915 777 ILKHE--MKVF-FVKYNDPIYVKLEKLDIMIRLASQA 810 (883)
Q Consensus 777 ~~~~~--~~~~-~~l~~dd~~Ir~~~l~lL~~l~~~~ 810 (883)
.+.+. ++.+ ....+++..|+.++..++-.+.+.+
T Consensus 462 ~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 462 MIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 12211 2222 2344557778888888887776543
No 36
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.37 E-value=4.5e-11 Score=136.54 Aligned_cols=370 Identities=11% Similarity=0.060 Sum_probs=229.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHhh-CchhHHhcccceeeccCCCHHHHHHHHHHHHHhcCh-----------------
Q psy2915 290 PLVTLLSSEPEVQYVALRNINLIVQK-RPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQ----------------- 351 (883)
Q Consensus 290 ~L~~lL~~~~~vr~~aL~~l~~l~~~-~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~----------------- 351 (883)
.|..+++.++++|..|-+.+.++... .|+++..-..++. -.+.+..+|..|.-+|-.+.+.
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~-~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~ 84 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA-NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID 84 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCC
Confidence 34445566778888888888876653 3443322122221 1334778888888888777542
Q ss_pred -hhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCC--C
Q psy2915 352 -ANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDE--N 428 (883)
Q Consensus 352 -~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~--~ 428 (883)
+..+.|-+.|...+.+.++.+ ..+..+|+.++....+.. .-++++..+.+.+.+. +
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--------------------~w~~ll~~L~~~l~~~~~~ 143 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--------------------QWPELIPQLVANVTNPNST 143 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--------------------CCTTHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--------------------ccHHHHHHHHHHhccCCCC
Confidence 233445555555555556666 667777777765431110 1123444444444455 7
Q ss_pred HHHHHHHHHHHHHHhhcC-C----chHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhcc
Q psy2915 429 TQVQLQLLTAIVKLFLKR-P----TDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTV 503 (883)
Q Consensus 429 ~~vr~~~L~al~Kl~~~~-~----~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~ 503 (883)
+.+|..++.++.++.... + .....++..+++...++..+++||..|...+.-+-...+ +...
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-----~~~~-------- 210 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-----ANFD-------- 210 (462)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-----HHHT--------
T ss_pred HHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-----Hhhh--------
Confidence 788888888888877543 2 234556666666554441268999888644432111000 0000
Q ss_pred CCCccc-chHHHHHhhcccchhHHHHHHHHHHhhccCCch----hhH-hHHHHHHhhcCCCCHHHHHHHHHHhcCCChhh
Q psy2915 504 GKDVSA-LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD----MAI-MAVNTFVKDCEDSNPLIRALAVRTMGCIRVDK 577 (883)
Q Consensus 504 g~~~~~-~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~----~~~-l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~ 577 (883)
...... ....+.+.+.+.+..+|+.++..+..+....++ ... -+++.+...+++.++.+|..|+..++.+....
T Consensus 211 ~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 000001 122223456677788888777777666433322 112 34556666677899999999999887664332
Q ss_pred ---------------------------hhHHHHHHHHhhcC-------CCChHHHhhHHHHHHHHHhhcccccccccHHH
Q psy2915 578 ---------------------------ITEYLCEPLRKCLK-------DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD 623 (883)
Q Consensus 578 ---------------------------~~~~l~~~l~~~l~-------d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~ 623 (883)
..+.++|.+.+.+. |.+|.+|+.|+.++..+....++.+. +.+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-~~~~~ 369 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLP 369 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-HHHHH
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 12556777777674 34689999999999999988775443 45778
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHH
Q psy2915 624 QLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICE 703 (883)
Q Consensus 624 ~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~ 703 (883)
.+.+.+.|+++.+|.+|+.+++.++.... ++ .+.+. ...+++
T Consensus 370 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~---------------------------------~~~~~----l~~~~~ 411 (462)
T 1ibr_B 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPE-PS---------------------------------QLKPL----VIQAMP 411 (462)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSC-TT---------------------------------TTCTT----TTTHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCc-HH---------------------------------HHHHH----HHHHHH
Confidence 88899999999999999999999985311 00 00011 125788
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHhhhhCCC
Q psy2915 704 RITPRLAHANAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 704 ~l~~~l~~~~~aV~~eai~~i~~~~~~~~~ 733 (883)
.+.+.+++.++.|+..|+.++..++..+++
T Consensus 412 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 412 TLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 889999999999999999999999765543
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.35 E-value=1.2e-09 Score=126.77 Aligned_cols=330 Identities=15% Similarity=0.169 Sum_probs=220.1
Q ss_pred hHHHHHhh-cCChhHHHHHHHHHHHHHhhC--ch--hHHhc--cc-ceeecc-CCCHHHHHHHHHHHHHhc--ChhhHHH
Q psy2915 288 APPLVTLL-SSEPEVQYVALRNINLIVQKR--PD--ILKHE--MK-VFFVKY-NDPIYVKLEKLDIMIRLA--SQANIAQ 356 (883)
Q Consensus 288 ~~~L~~lL-~~~~~vr~~aL~~l~~l~~~~--~~--~~~~~--~~-~~~~l~-~~~~~Ir~~aL~iL~~l~--~~~nv~~ 356 (883)
++.++..+ +++++.++.|...+.++.... |. .+... ++ .+.+|. ++++.++..|..+|..++ ++++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44556656 456799999999999987654 31 12221 22 333565 566889999999999997 4556555
Q ss_pred H-----HHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHH-----HHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcC
Q psy2915 357 V-----LSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERC-----VSTLLDLIQTKYAERIDNADELLESFLEGFHD 426 (883)
Q Consensus 357 I-----l~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~-----v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~ 426 (883)
| ++.|...+.+.+++++..++.+++.++...+.....+ ++.++.++... ....
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~-----------------~~~~ 201 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP-----------------DLST 201 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS-----------------CGGG
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhc-----------------cchh
Confidence 4 5678888999999999999999999996544432221 22333333221 0011
Q ss_pred CCHHHHHHHHHHHHHHhhcCCc-----hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhh
Q psy2915 427 ENTQVQLQLLTAIVKLFLKRPT-----DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASM 501 (883)
Q Consensus 427 ~~~~vr~~~L~al~Kl~~~~~~-----~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~ 501 (883)
....++..+..++..+...... .....++.+.+...++ +++++..|+..+..+..+.... .+.+..
T Consensus 202 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~------~~~i~~- 272 (510)
T 3ul1_B 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNER------IEMVVK- 272 (510)
T ss_dssp SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHH------HHHHHT-
T ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhh------HHHHHh-
Confidence 2233444455555555433211 1345556666655543 7999998887666665543211 111111
Q ss_pred ccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcCCCCHHHHHHHHHHhcCCC--
Q psy2915 502 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCEDSNPLIRALAVRTMGCIR-- 574 (883)
Q Consensus 502 ~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~vr~~AL~~L~~i~-- 574 (883)
..+...+++++.+++..++.-+..+++.+...+++.... ++..+.+.++++++.+|..|..+|+++.
T Consensus 273 ------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 273 ------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp ------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred ------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 235677788999999988888888888876665544322 3345667788999999999999999874
Q ss_pred hhhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc-c---ccccccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy2915 575 VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA-Q---LVEDQGFLDQLKDLLSDSNPMVVANAVAALS 645 (883)
Q Consensus 575 ~~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~-~---~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~ 645 (883)
.++... .++|.+..++.+.++.||+.|+.++.++..... + .+.+...++.|.++|.++|+.++..++.+|.
T Consensus 347 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 347 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 333222 266888999999999999999999999876432 2 1223567899999999999999999999998
Q ss_pred HHHh
Q psy2915 646 EMNE 649 (883)
Q Consensus 646 ~i~~ 649 (883)
.+.+
T Consensus 427 nil~ 430 (510)
T 3ul1_B 427 NIFQ 430 (510)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.30 E-value=5.1e-10 Score=129.90 Aligned_cols=374 Identities=16% Similarity=0.173 Sum_probs=251.1
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCc-hHH-----HHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhh
Q psy2915 417 LESFLEGFHDENTQVQLQLLTAIVKLFLKRPT-DTQ-----ELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYIL 490 (883)
Q Consensus 417 l~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~-~~~-----~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~ 490 (883)
++.+.+.+...+.++|..+.+++-|+...... -+. ..++.+.+....+ +++++|..|...+.-+..+...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e--- 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSE--- 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHH---
Confidence 44556667778899999999999998765422 122 2466677766655 4799998887666555433211
Q ss_pred hhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhH-----HHHHHhhcCCCCH-----
Q psy2915 491 LHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMA-----VNTFVKDCEDSNP----- 560 (883)
Q Consensus 491 ~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~-----~n~l~kdl~~~n~----- 560 (883)
.-+.++. ..+.+.+++++.+++..++..+..+++.+....++....+ +..+...+++++.
T Consensus 135 --~~~~vv~--------~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~ 204 (510)
T 3ul1_B 135 --QTKAVVD--------GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 204 (510)
T ss_dssp --HHHHHHH--------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH
T ss_pred --HHHHHHH--------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhH
Confidence 1111111 2346777899999999999999999999887766644433 4567777776542
Q ss_pred HHHHHHHHHhcCC-------ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhc
Q psy2915 561 LIRALAVRTMGCI-------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLS 630 (883)
Q Consensus 561 ~vr~~AL~~L~~i-------~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~ 630 (883)
.+...|..+++++ ........++|.+.+++.++++.|+..|+.++..+....++. +.....++.|.++|.
T Consensus 205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 3444555555533 223345678899999999999999999999999987644332 234567899999999
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHH
Q psy2915 631 DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERI 705 (883)
Q Consensus 631 D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l 705 (883)
++++.|+..|+.++..+...++..... -.....+..|...+...++-.+......|..++..++.... .+++.+
T Consensus 285 ~~~~~v~~~al~aL~nl~~~~~~~~~~-i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 285 ATELPIVTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCChhhhhHHHHHHHHhhcCCHHHHHH-HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 999999999999999998653211100 00111222344445567788888888999888776654433 467788
Q ss_pred hHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHH-HHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch-------
Q psy2915 706 TPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLT-KKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD------- 776 (883)
Q Consensus 706 ~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~-~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~------- 776 (883)
..++++.+..|+.+|+.++.+++.. ++++.....+ ..+.++|+.++. .+++++..+|..|..|.+..++
T Consensus 364 v~lL~~~~~~v~~~Aa~aL~Nl~~~--~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~ 441 (510)
T 3ul1_B 364 VGVLSKADFKTQKEAAWAITNYTSG--GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 441 (510)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHH
Confidence 8999999999999999999988632 2222222222 256788999987 5889999999998888764221
Q ss_pred --hHhhc--cceeE-EccCCCHHHHHHHHHHHHHhc
Q psy2915 777 --ILKHE--MKVFF-VKYNDPIYVKLEKLDIMIRLA 807 (883)
Q Consensus 777 --~~~~~--~~~~~-~l~~dd~~Ir~~~l~lL~~l~ 807 (883)
.+.+. ++.+. +..+++..|+.+|.++|-+.-
T Consensus 442 ~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 442 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12221 22232 234567788888888876544
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.29 E-value=9.8e-10 Score=128.20 Aligned_cols=373 Identities=16% Similarity=0.173 Sum_probs=253.1
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCch-H-----HHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhh
Q psy2915 417 LESFLEGFHDENTQVQLQLLTAIVKLFLKRPTD-T-----QELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYIL 490 (883)
Q Consensus 417 l~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~-~-----~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~ 490 (883)
++.+.+.+...+.+.+..++.++-|+....... . ...++.+++....+ +++++|..|...+.-+..+....
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~-- 154 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQ-- 154 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHH--
Confidence 445556667788999999999999987654321 1 23456677776655 47999988876665554432211
Q ss_pred hhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhH-----HHHHHhhcCCCCH-----
Q psy2915 491 LHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMA-----VNTFVKDCEDSNP----- 560 (883)
Q Consensus 491 ~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~-----~n~l~kdl~~~n~----- 560 (883)
.+.+.. ..+.+.+++++.+++..++..+..+++.+...+++....+ +..+..-+.+++.
T Consensus 155 ----~~~vv~-------~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 155 ----TKAVVD-------GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp ----HHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred ----HHHHHH-------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 111111 2346777899999999999999999999887766654443 4567777766542
Q ss_pred HHHHHHHHHhcCC-------ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhc
Q psy2915 561 LIRALAVRTMGCI-------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLS 630 (883)
Q Consensus 561 ~vr~~AL~~L~~i-------~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~ 630 (883)
.+...|..+++++ ........++|.+.+++.++++.|+..|+.++..+....++. +.....++.|..+|.
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 3344455555432 223345668899999999999999999999999887654332 334567899999999
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHH
Q psy2915 631 DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERI 705 (883)
Q Consensus 631 D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l 705 (883)
++++.|+..|+.++..+...++.... .-.....+..|...+...++..+......|..++..++.... .+++.+
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~-~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQ-KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHH-HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 99999999999999999865322111 111122344566667778888888888899888766554333 467788
Q ss_pred hHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch-------
Q psy2915 706 TPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD------- 776 (883)
Q Consensus 706 ~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~------- 776 (883)
..++.+.+..|+.+|+.++.+++. .++++.....++ .+.++|+.++. .+++++..+|..|..|.+..+.
T Consensus 383 v~lL~~~~~~v~~~A~~aL~nl~~--~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~ 460 (529)
T 3tpo_A 383 VGVLSKADFKTQKAAAWAITNYTS--GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 460 (529)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHH--HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence 899999999999999999998863 223332233333 56788999997 5888999999998887753211
Q ss_pred --hHhhc--cceeE-EccCCCHHHHHHHHHHHHHh
Q psy2915 777 --ILKHE--MKVFF-VKYNDPIYVKLEKLDIMIRL 806 (883)
Q Consensus 777 --~~~~~--~~~~~-~l~~dd~~Ir~~~l~lL~~l 806 (883)
.+.+. ++.+. ...+++..|+.+|.++|-+.
T Consensus 461 ~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 461 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 12221 22222 24566888888888888654
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=8.8e-11 Score=119.35 Aligned_cols=149 Identities=25% Similarity=0.364 Sum_probs=69.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHh
Q psy2915 549 NTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDL 628 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~l 628 (883)
+.+.+.++++++.+|..|+..|+.++.++..+ .+.+++.|+++.||..|+.+++++. ++..++.+.++
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~ 89 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIG--------DERAVEPLIKA 89 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHH----HHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHH
Confidence 34444445555555555555555554433322 2334444555555555555554441 11223444455
Q ss_pred hcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHh
Q psy2915 629 LSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPR 708 (883)
Q Consensus 629 L~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~ 708 (883)
|.|+|+.||..|+.+|..+... ..+..|.+.+.+.+++.+...++.|+.++.. ..++.+..+
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 151 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 151 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHH
Confidence 5555555555555555554321 1222333444444555555555555544332 124444445
Q ss_pred hcCCChHHHHHHHHHHHHh
Q psy2915 709 LAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 709 l~~~~~aV~~eai~~i~~~ 727 (883)
+++.++.|+.+++.++..+
T Consensus 152 l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHh
Confidence 5555555555555555555
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.27 E-value=5e-09 Score=122.21 Aligned_cols=330 Identities=15% Similarity=0.171 Sum_probs=218.2
Q ss_pred hHHHHHhh-cCChhHHHHHHHHHHHHHhhCch-----hHHhc-cc-ceeec-cCCCHHHHHHHHHHHHHhcC--hhhHHH
Q psy2915 288 APPLVTLL-SSEPEVQYVALRNINLIVQKRPD-----ILKHE-MK-VFFVK-YNDPIYVKLEKLDIMIRLAS--QANIAQ 356 (883)
Q Consensus 288 ~~~L~~lL-~~~~~vr~~aL~~l~~l~~~~~~-----~~~~~-~~-~~~~l-~~~~~~Ir~~aL~iL~~l~~--~~nv~~ 356 (883)
++.++..+ +++++.++.|+..+.++....+. ++..- ++ .+.++ .+++..++..|..+|..++. +.+...
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555 45678999999999888765432 12111 22 23345 46678899999999999985 444443
Q ss_pred -----HHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHH-----HHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcC
Q psy2915 357 -----VLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERC-----VSTLLDLIQTKYAERIDNADELLESFLEGFHD 426 (883)
Q Consensus 357 -----Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~-----v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~ 426 (883)
.++.|...+.+.+++++..++.+++.++...|.....+ ++.++.++... ....
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~-----------------~~~~ 220 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVP-----------------DLST 220 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSS-----------------CGGG
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhcc-----------------chhH
Confidence 56778888899999999999999999986544432222 22233333221 0011
Q ss_pred CCHHHHHHHHHHHHHHhhcCCc-----hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhh
Q psy2915 427 ENTQVQLQLLTAIVKLFLKRPT-----DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASM 501 (883)
Q Consensus 427 ~~~~vr~~~L~al~Kl~~~~~~-----~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~ 501 (883)
....+...+..++..+.....+ .....++.+.....++ +++++..|+..+..+..+... ....+..
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~------~~~~v~~- 291 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNE------RIEMVVK- 291 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHH------HHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhhhhh------hHHHHHh-
Confidence 1233444444455554432211 2345566666655543 789998887665555444321 1111111
Q ss_pred ccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcCCCCHHHHHHHHHHhcCC--C
Q psy2915 502 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCEDSNPLIRALAVRTMGCI--R 574 (883)
Q Consensus 502 ~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~vr~~AL~~L~~i--~ 574 (883)
..+...+++++.+++..++..+..+++.+...+++.... ++..+.+.++++++.+|..|..+|+++ +
T Consensus 292 ------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 292 ------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp ------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred ------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 235677888999999888888888888776655543322 445678888999999999999999987 3
Q ss_pred hhhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhc-cc---ccccccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy2915 575 VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN-AQ---LVEDQGFLDQLKDLLSDSNPMVVANAVAALS 645 (883)
Q Consensus 575 ~~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~-~~---~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~ 645 (883)
.++... .++|.+..++.++++.||+.|+.++.++.... ++ .+.+...++.|.++|..+|+.++..++.+|.
T Consensus 366 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 445 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 344322 26788889999999999999999999987643 22 1234567899999999999999999999998
Q ss_pred HHHh
Q psy2915 646 EMNE 649 (883)
Q Consensus 646 ~i~~ 649 (883)
.+.+
T Consensus 446 nil~ 449 (529)
T 3tpo_A 446 NIFQ 449 (529)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=1.1e-10 Score=117.63 Aligned_cols=184 Identities=23% Similarity=0.319 Sum_probs=153.9
Q ss_pred ccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHH
Q psy2915 508 SALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLR 587 (883)
Q Consensus 508 ~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~ 587 (883)
......+++.+.++++.+|..+..+++.++.. -.+..+.+.++++++.+|..|+.+|+.++.++..+ .+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~----~L~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLI 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHH
Confidence 34567789999999999999999999888753 24677888889999999999999999999876655 566
Q ss_pred hhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHH
Q psy2915 588 KCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINK 667 (883)
Q Consensus 588 ~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~ 667 (883)
+++.|++|.||..|+.+++++. ++..++.+..++.|+++.||..|+.++..+... ..+..
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~ 142 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------RAVEP 142 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------------GGHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------------HHHHH
Confidence 7889999999999999999872 233568889999999999999999999999742 34456
Q ss_pred HHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHh
Q psy2915 668 LLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 668 L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~ 727 (883)
|.+.+.+.+++.+..+++.|..++.. ..++.+...+++.++.|+.+|+.++..+
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEIGGE------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCSH------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCch------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 77778889999999999999999642 5678888888889999999999998876
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.26 E-value=1.2e-10 Score=118.34 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=153.4
Q ss_pred ccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHH
Q psy2915 508 SALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLR 587 (883)
Q Consensus 508 ~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~ 587 (883)
......+++.+.++++.+|..+...++.++.. -+++.+.+.++|+++.+|..|+.+|+.+++++..+ .+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~----~L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLI 87 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHH
Confidence 44567778889999999999988888887652 25677888899999999999999999999876655 566
Q ss_pred hhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHH
Q psy2915 588 KCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINK 667 (883)
Q Consensus 588 ~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~ 667 (883)
+++.|+++.||..|+.+++++. ++..++.|..++.|+++.|+..|+.+|..+... ..+..
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~ 147 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE------------RAVEP 147 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------------HHHHH
Confidence 7789999999999999999873 234568899999999999999999999999642 34456
Q ss_pred HHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 668 LLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 668 L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
|.+.+.+.+++.+..+++.|..++. ...++.+..++++.++.|+.+|+.++..+.
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 7777788999999999999999975 256788888889999999999999998874
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.24 E-value=1.8e-10 Score=116.15 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=146.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHH
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK 626 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~ 626 (883)
..+.+.+.++++++.+|..|+..|+.++.++..+ .+.+++.|+++.||..|+.+++++. . +..++.+.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~--~------~~~~~~L~ 82 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIG--D------ERAVEPLI 82 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHC--C------GGGHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhC--C------HHHHHHHH
Confidence 5677888999999999999999999998866554 5667789999999999999998772 2 24568889
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHh
Q psy2915 627 DLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERIT 706 (883)
Q Consensus 627 ~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~ 706 (883)
.+|.|+++.||..|+.+|..+... ..+..+.+.+.+.+++.+..+++.|+.++.. ..++.+.
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~ 144 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLI 144 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHH
Confidence 999999999999999999998742 2445677777889999999999999998753 3477888
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHH
Q psy2915 707 PRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIV 771 (883)
Q Consensus 707 ~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~ 771 (883)
.++.+.++.|+.+|+.++..+ +. +. ..+.|..++. .++.+|..+...|..+-
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~----~~-----~~----~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEI----GG-----ER----VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH----CS-----HH----HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHh----Cc-----hh----HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 888999999999999999998 22 22 3344445554 67889999988887653
No 45
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.10 E-value=4.8e-05 Score=91.31 Aligned_cols=287 Identities=11% Similarity=0.111 Sum_probs=167.5
Q ss_pred HHHHHhhcC---CCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCC--------hHHHhhHHHHHHHHHhhccccc
Q psy2915 548 VNTFVKDCE---DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDED--------PYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 548 ~n~l~kdl~---~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~--------~~VRk~A~~al~~l~~~~~~~~ 616 (883)
...+.+-+- ++++.+|+.|+-+||-+....-.+ ....+...+.+++ +.||..|+++|+-++--..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--- 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--- 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC---
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC---
Confidence 455566665 678999999999999664322111 2344455555444 8899999999997754221
Q ss_pred ccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcc--cCChhhHHHHHHHHhccCCCC
Q psy2915 617 EDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALN--ECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 617 ~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~--~~~~w~qi~iL~lL~~~~~~~ 694 (883)
+++..+.|..++.|.+..++..|.-+++.+--...+ ...+..|+..+. +.+.|.+. +.-.|+.+...+
T Consensus 470 -~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--------~~ai~~LL~~~~e~~~e~vrR~-aalgLGll~~g~ 539 (963)
T 4ady_A 470 -NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--------PEAIHDMFTYSQETQHGNITRG-LAVGLALINYGR 539 (963)
T ss_dssp -CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHHHCSCHHHHHH-HHHHHHHHTTTC
T ss_pred -CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--------HHHHHHHHHHHhccCcHHHHHH-HHHHHHhhhCCC
Confidence 124568888888888877777787788877332111 244555555442 23444443 444455555555
Q ss_pred hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhh
Q psy2915 695 DREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQK 773 (883)
Q Consensus 695 ~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~ 773 (883)
++....+++.+. .+.++.|++.++-++.--+- -.++ ..+++.+.. .+.+ .+.++|-.|.-.|..+...
T Consensus 540 ~e~~~~li~~L~---~~~dp~vRygaa~alglAya-GTGn----~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 540 QELADDLITKML---ASDESLLRYGGAFTIALAYA-GTGN----NSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp GGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTT-TSCC----HHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhc-CCCC----HHHHHHHHH---HhccCCcHHHHHHHHHHHHhhccC
Confidence 544544444443 35788899888777653221 1222 233333322 2222 4567898888888888776
Q ss_pred CchhHhhccceeEEccCCCHHHHHHHHHHHHHhccccchhh------------hhHHHHHHHHHHHHHHhhCCC----ch
Q psy2915 774 RPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ------------VNYVVQEAIVVIKDIFRKYPN----KY 837 (883)
Q Consensus 774 ~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~~------------~~~~~~e~i~~i~~l~~~~p~----~~ 837 (883)
.|+.+.+.+..+ ..+.|+.||+.+.--|-.++...+-.. .+++.+.++.++..+.....+ ..
T Consensus 609 ~~e~v~rlv~~L--~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv 686 (963)
T 4ady_A 609 DYTTVPRIVQLL--SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV 686 (963)
T ss_dssp SCSSHHHHTTTG--GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH
T ss_pred CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH
Confidence 676544433322 123478999888777766654333211 345666677777777655443 34
Q ss_pred HHHHHHHHhhccc-CCcHHHHHHHH
Q psy2915 838 ETIISTLCENLDT-LDEPEARASMI 861 (883)
Q Consensus 838 ~~~i~~L~~~l~~-i~~~~~~~~~~ 861 (883)
..++.+|...+.+ -.++.++-++.
T Consensus 687 a~~l~~L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 687 ADINKNFLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp HHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccHHHHHHHH
Confidence 5556666655532 34565655443
No 46
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.05 E-value=4e-06 Score=104.86 Aligned_cols=246 Identities=9% Similarity=0.143 Sum_probs=136.9
Q ss_pred cchhHHHHHHHHHHhhccCCch-hhHhHHHHHHhhcC------CCCHHHHHHHHHHhcCCCh---------h------hh
Q psy2915 521 DNLELKKLVYLYLMNYAKSHPD-MAIMAVNTFVKDCE------DSNPLIRALAVRTMGCIRV---------D------KI 578 (883)
Q Consensus 521 ~~~~~kr~~yl~~~~~~~~~~~-~~~l~~n~l~kdl~------~~n~~vr~~AL~~L~~i~~---------~------~~ 578 (883)
+.+..|+.+.-++..+....++ +...+.+.+..-++ +++...|-+|+.++|.+.. . ++
T Consensus 373 d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 3345666666666666544432 22233344444343 5677889899998776521 1 33
Q ss_pred hHHHHHHHHhhcCCC---ChHHHhhHHHHHHHHHhhcc-cccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC---
Q psy2915 579 TEYLCEPLRKCLKDE---DPYVRKTAAVCVAKLYDINA-QLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS--- 651 (883)
Q Consensus 579 ~~~l~~~l~~~l~d~---~~~VRk~A~~al~~l~~~~~-~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~--- 651 (883)
.+.+...+...+.|+ +|.||.+|+.+++++....+ +.. ...++.+.+.|.|+++.|+.+|+.++..++...
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESN 530 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence 343444455556777 99999999999999877543 222 345566777788999999999999999988631
Q ss_pred ----C--CchhhHHhcHHHHHHHHHHcccC---------ChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhh----cC-
Q psy2915 652 ----T--SGVALIEMNAQTINKLLTALNEC---------TEWGQVFILDSLSNYSPKDDREAQSICERITPRL----AH- 711 (883)
Q Consensus 652 ----~--~~~~~~~l~~~~~~~L~~~l~~~---------~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l----~~- 711 (883)
+ ..+...+..+..+..|++.+... ++..---+-+++..+...-..-...+++.+...+ ++
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~ 610 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP 610 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 1 12334556677788888777653 2222222223333333222222334444444333 22
Q ss_pred CChHH---HHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCC-cchHHHHHHHHHHHHhh
Q psy2915 712 ANAAV---VLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALRNINLIVQK 773 (883)
Q Consensus 712 ~~~aV---~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~niry~aL~~l~~l~~~ 773 (883)
.+... .+||+.+++.. ..++........+.+++...+..+ .+..=-++..+..+...
T Consensus 611 ~~~~~~~~~~e~l~~l~~~-----~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 611 SNPRFTHYTFESIGAILNY-----TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHT-----SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 23333 45666555543 122344556667777777776542 33222255555555544
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.05 E-value=2e-05 Score=98.56 Aligned_cols=314 Identities=11% Similarity=0.090 Sum_probs=172.1
Q ss_pred hhHhHHHHHHhhc----CCCCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh-
Q psy2915 543 MAIMAVNTFVKDC----EDSNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI- 611 (883)
Q Consensus 543 ~~~l~~n~l~kdl----~~~n~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~- 611 (883)
....+.+.+..-+ .+++...|-+|+.++|.+.. ....+.+++.+. .+.+++|.||.+++.+++++.+.
T Consensus 442 ~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l 520 (963)
T 2x19_B 442 LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWL 520 (963)
T ss_dssp HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344555555555 56788888888888886632 234445555433 33556899999999999998774
Q ss_pred --cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc--CChhhHHHHHHHH
Q psy2915 612 --NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE--CTEWGQVFILDSL 687 (883)
Q Consensus 612 --~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~--~~~w~qi~iL~lL 687 (883)
+|+.+ +.+++.+.+.|.| +.|+..|+.++..++...+ +.+.+..+..+..+.+.+.. .++-.+..+++.+
T Consensus 521 ~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai 594 (963)
T 2x19_B 521 ADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQAL 594 (963)
T ss_dssp HHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34444 3566777777765 8999999999999997532 33445566677777766653 3455677777777
Q ss_pred hccCCCC-hHHHH----HHHHHHhHhh----cCC-Ch------HHHHHHHHHHHHhhhhCCC------------------
Q psy2915 688 SNYSPKD-DREAQ----SICERITPRL----AHA-NA------AVVLSAVKVLMKLMEMLPG------------------ 733 (883)
Q Consensus 688 ~~~~~~~-~~~~~----~il~~l~~~l----~~~-~~------aV~~eai~~i~~~~~~~~~------------------ 733 (883)
+.....- ++... .+++.+...+ ++. ++ ...++++..+... ++.
T Consensus 595 ~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~---~~~~~~~~~~~~~~~~~~~~~ 671 (963)
T 2x19_B 595 GFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT---LDISHHEDDHEGPELRKLPVP 671 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH---CCSSCCC--------------
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccccccccCCCC
Confidence 7754222 22222 3333333332 221 22 1233444444333 221
Q ss_pred -ChhhHHHHHHHhhhHHHHhcc---CCcchHHHHHHHHHHHHhhCchhHhhccceeE-----Ecc-CCCHHHHHHHHHHH
Q psy2915 734 -EGDFVSTLTKKLAPPLVTLLS---SEPEVQYVALRNINLIVQKRPDILKHEMKVFF-----VKY-NDPIYVKLEKLDIM 803 (883)
Q Consensus 734 -~~~l~~~~~~~~~~~L~~ll~---~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~-----~l~-~dd~~Ir~~~l~lL 803 (883)
.++-.......+.+.+..++. .++++.-.++..+..++...++.+.++++.+. ... .+.. ..+.++
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----~~l~l~ 747 (963)
T 2x19_B 672 QGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQA----SALDLT 747 (963)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCH----HHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCcc----HHHHHH
Confidence 011123345556665555553 35566666666666666544333222221100 000 0111 123333
Q ss_pred HHhcc----ccchhh-----------------------hhHHHHHHHHHHHHHHhhCCCc-------hHHHHHHHHhhcc
Q psy2915 804 IRLAS----QANIAQ-----------------------VNYVVQEAIVVIKDIFRKYPNK-------YETIISTLCENLD 849 (883)
Q Consensus 804 ~~l~~----~~N~~~-----------------------~~~~~~e~i~~i~~l~~~~p~~-------~~~~i~~L~~~l~ 849 (883)
..++. ...+.. ...+.++....+..+++.+|.. ...++..+...++
T Consensus 748 ~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 827 (963)
T 2x19_B 748 RQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALK 827 (963)
T ss_dssp HHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcC
Confidence 33332 111110 1234445555666666666542 4556666666665
Q ss_pred cCCcHHHHHHHHHHHhcCcCcc
Q psy2915 850 TLDEPEARASMIWIIGEYAERI 871 (883)
Q Consensus 850 ~i~~~~~~~~~~w~lgey~~~~ 871 (883)
..++++..++++.+.+..+..
T Consensus 828 -~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 828 -FPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp -CSCHHHHHHHHHHHHHHGGGT
T ss_pred -CCCHHHHHHHHHHHHHHHhcC
Confidence 567888888888888766543
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.02 E-value=2.1e-08 Score=104.13 Aligned_cols=225 Identities=21% Similarity=0.204 Sum_probs=169.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cc
Q psy2915 548 VNTFVKDCEDSNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VE 617 (883)
Q Consensus 548 ~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~ 617 (883)
++.+.+.++++++.+|..|+.+|+++. .++... ..++.+.+++.++++.||..|+.++..+....++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 566778888889999999999998772 232222 36788889999999999999999999997653332 22
Q ss_pred cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHH
Q psy2915 618 DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDRE 697 (883)
Q Consensus 618 ~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~ 697 (883)
....++.+..+|.++++.++..|+.+|..++...++..... .....+..+++.+.+.++..+...+.+|..+...++..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI-VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 34578999999999999999999999999996433221111 11235667888888889999999999999998766543
Q ss_pred HH-----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHH
Q psy2915 698 AQ-----SICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLI 770 (883)
Q Consensus 698 ~~-----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l 770 (883)
.. ..++.+..++.+.++.|+..|+.++..++ ...++....+.+ .+.+.|+.++. .++++|..++..+..+
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~---~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA---SGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT---TSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHH---cCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 32 36788899999999999999999999996 233333333322 45677777776 5778999999999998
Q ss_pred HhhCch
Q psy2915 771 VQKRPD 776 (883)
Q Consensus 771 ~~~~~~ 776 (883)
....+.
T Consensus 240 ~~~~~~ 245 (252)
T 4hxt_A 240 KSGGWL 245 (252)
T ss_dssp HHTCBC
T ss_pred HcCCCc
Confidence 886654
No 49
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.94 E-value=1.5e-07 Score=112.78 Aligned_cols=293 Identities=16% Similarity=0.138 Sum_probs=196.0
Q ss_pred CChhHHHHHHHHHHHHHhhCchh----HHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcC---
Q psy2915 297 SEPEVQYVALRNINLIVQKRPDI----LKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVD--- 369 (883)
Q Consensus 297 ~~~~vr~~aL~~l~~l~~~~~~~----~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d--- 369 (883)
+.+..++.|+.+++.|...+.+- +.+|+.. -.+++.++|--|+--|+.+..... ..++..|..++.+.+
T Consensus 370 ~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaLGli~ag~~-~~~~~lL~~~L~~~~~~~ 445 (963)
T 4ady_A 370 AQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGLGLIYAGFG-RDTTDYLKNIIVENSGTS 445 (963)
T ss_dssp CCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHHHHHTTTTT-HHHHHHHHHHHHHHSSCC
T ss_pred cchHHHHHHHHHhhhhccCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHcCccccc
Confidence 44567899999999988876532 3333221 026788999999999988765443 257788888887655
Q ss_pred -----HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q psy2915 370 -----VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFL 444 (883)
Q Consensus 370 -----~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~ 444 (883)
+.+|..++.++|.+..- ...+.+++.|..++ .+++..++..+.-+++.++.
T Consensus 446 ~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L----------------------~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 446 GDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVL----------------------YNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHH----------------------HTCCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH----------------------hcCCHHHHHHHHHHHhhhhc
Confidence 67888888899876421 11233444444443 34445666677778888877
Q ss_pred cCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhc-ccch
Q psy2915 445 KRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQ-TDNL 523 (883)
Q Consensus 445 ~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~-s~~~ 523 (883)
... ..+++..+++.+.++. +.++|.-++.-++++..+.+ .....+++.+. +.++
T Consensus 502 GTg--n~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~----------------------e~~~~li~~L~~~~dp 556 (963)
T 4ady_A 502 GTG--KPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ----------------------ELADDLITKMLASDES 556 (963)
T ss_dssp TCC--CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG----------------------GGGHHHHHHHHHCSCH
T ss_pred ccC--CHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh----------------------HHHHHHHHHHHhCCCH
Confidence 654 4567788888777663 67777666666665544332 23445555544 4667
Q ss_pred hHHHHHHHHHHh-hccCCchhhHhHHHHHHh-hcCCCCHHHHHHHHHHhcC--CChhhhhHHHHHHHHhhcCCCChHHHh
Q psy2915 524 ELKKLVYLYLMN-YAKSHPDMAIMAVNTFVK-DCEDSNPLIRALAVRTMGC--IRVDKITEYLCEPLRKCLKDEDPYVRK 599 (883)
Q Consensus 524 ~~kr~~yl~~~~-~~~~~~~~~~l~~n~l~k-dl~~~n~~vr~~AL~~L~~--i~~~~~~~~l~~~l~~~l~d~~~~VRk 599 (883)
.+|..+-++++. |....... +++.+.. ...++++.||+.|+-+||. ++.+++++.+ +..+..+.+|.||+
T Consensus 557 ~vRygaa~alglAyaGTGn~~---aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl---v~~L~~~~d~~VR~ 630 (963)
T 4ady_A 557 LLRYGGAFTIALAYAGTGNNS---AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI---VQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHHHHHHHHHHTTTSCCHH---HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH---TTTGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHH---HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH---HHHHHhcCCHHHHH
Confidence 777665555442 33333222 4443333 3356788999999999996 4777665542 23345689999999
Q ss_pred hHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 600 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
.|++|++.++.-.|. .+.++.|..++.|.|..||.+|+.+|+.+.....
T Consensus 631 gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 631 GTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 999999988754443 2466899999999999999999999999997543
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.92 E-value=8.1e-08 Score=99.67 Aligned_cols=218 Identities=19% Similarity=0.183 Sum_probs=169.3
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhhH-----hHHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhhHH--
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI-----MAVNTFVKDCEDSNPLIRALAVRTMGCIRV--DKITEY-- 581 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~-----l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~--~~~~~~-- 581 (883)
...+++++.+++...+..+..++..+....++... -+++.+.+.++++++.+|..|+.+|+++.. ++..+.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45677888888888888888888888766653222 257888899999999999999999998854 343332
Q ss_pred ---HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCch
Q psy2915 582 ---LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV 655 (883)
Q Consensus 582 ---l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~ 655 (883)
.++.+.+++.++++.||..|+.++..+....++. +.+...++.+.+++.++++.++..|+.++..++...++..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 5788999999999999999999999998644432 2234578999999999999999999999999987533221
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcCCChHHHHHHHHHHHHhhh
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAHANAAVVLSAVKVLMKLME 729 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~~~~aV~~eai~~i~~~~~ 729 (883)
.. -.....+..|++.+.+.++..+...+.+|..+...++.... ..++.+..++++.++.|+.+|+.++.++..
T Consensus 164 ~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 164 KA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 11 11123566788888888999999999999999876554433 356888899999999999999999999864
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.89 E-value=3.4e-08 Score=102.92 Aligned_cols=222 Identities=18% Similarity=0.186 Sum_probs=168.6
Q ss_pred CcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhh-----HhHHHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhh
Q psy2915 506 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMA-----IMAVNTFVKDCEDSNPLIRALAVRTMGCIRV--DKI 578 (883)
Q Consensus 506 ~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~-----~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~--~~~ 578 (883)
+-.+.|...++.+.+++...+..+..++..+....++.. .-+++.+.+.++++++.+|..|+.+|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 345568889999999999998887777754432222211 1256788899999999999999999998854 443
Q ss_pred hHH-----HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 579 TEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 579 ~~~-----l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
... .++.+.+++.++++.||..|+.+++.+....+.. +.+...++.+.++|.++++.|+..|+.+|..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 333 6788999999999999999999999997654422 33456889999999999999999999999999965
Q ss_pred CCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcCCChHHHHHHHHHHH
Q psy2915 651 STSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAHANAAVVLSAVKVLM 725 (883)
Q Consensus 651 ~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~~~~aV~~eai~~i~ 725 (883)
.++....+ .....+..|++.+.+.++..+...+.+|..+...+++... ..++.+..++++.++.|..+|+.++.
T Consensus 169 ~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 169 GNEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp CHHHHHHH-HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred ChHHHHHH-HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33211110 1123466788888888999999999999999866654433 35677888899999999999999987
Q ss_pred Hhh
Q psy2915 726 KLM 728 (883)
Q Consensus 726 ~~~ 728 (883)
+++
T Consensus 248 ~l~ 250 (252)
T 4db8_A 248 KLQ 250 (252)
T ss_dssp TTC
T ss_pred HHh
Confidence 763
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.79 E-value=9.4e-08 Score=99.50 Aligned_cols=219 Identities=17% Similarity=0.173 Sum_probs=160.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhcCCCh--hhhh-----HHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cc
Q psy2915 548 VNTFVKDCEDSNPLIRALAVRTMGCIRV--DKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VE 617 (883)
Q Consensus 548 ~n~l~kdl~~~n~~vr~~AL~~L~~i~~--~~~~-----~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~ 617 (883)
.+.+.+.++++++.+|..|+.+|.++-. ++.. ...++.+.+++.++++.||..|+.++..+....++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4778888999999999999999976422 2222 225688999999999999999999999998644332 22
Q ss_pred cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHH
Q psy2915 618 DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDRE 697 (883)
Q Consensus 618 ~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~ 697 (883)
+...++.+..+|.++++.|+..|+.+|..++...+.... .-.....+..|++.+.+.++-.+...+..|..+...+++.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 345789999999999999999999999999865322101 1112235667888888888889999999999998766544
Q ss_pred HH-----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHH
Q psy2915 698 AQ-----SICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLI 770 (883)
Q Consensus 698 ~~-----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l 770 (883)
.. ..++.+..++.+.++.|+..|+.++..++ ...++....+.+ .+.+.|+.++. .++++|..+...|..+
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT---TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh---cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 33 34678889999999999999999999985 233333333333 35566666665 4677777777766554
No 53
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.75 E-value=3.3e-07 Score=92.46 Aligned_cols=187 Identities=18% Similarity=0.175 Sum_probs=138.2
Q ss_pred CCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcCCCCHHHHHHHHHHhcCCC--hh
Q psy2915 504 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCEDSNPLIRALAVRTMGCIR--VD 576 (883)
Q Consensus 504 g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~ 576 (883)
|+.....++.+++++.+++..++..+..++..+...+++.... +++.+.+.++++++.+|..|+.+|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 3455666778889999999999999999998887665544322 5678888999999999999999999884 34
Q ss_pred hhhHH-----HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy2915 577 KITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 577 ~~~~~-----l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~ 648 (883)
+.... .++.+.+++.++++.||+.|+.++.++....++. +.+...++.|.+++.++++.|+..|+.+|..++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 43333 5688899999999999999999999998654432 224568899999999999999999999999998
Q ss_pred hcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 649 EASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 649 ~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
...+ .....+.+ ...++.+..++++.++.|..+|+.++..++
T Consensus 167 ~~~~----------~~~~~~~~----------------------------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 167 SGGN----------EQKQAVKE----------------------------AGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp TSCH----------HHHHHHHH----------------------------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cCCc----------HHHHHHHH----------------------------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 6422 11111111 145677777888888888888888887663
No 54
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.75 E-value=0.00018 Score=84.61 Aligned_cols=495 Identities=12% Similarity=0.099 Sum_probs=251.4
Q ss_pred HHHHHHHHHhccCC--chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHh----cCCCh
Q psy2915 131 LIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL----SDSNP 204 (883)
Q Consensus 131 ~vr~lALr~L~~i~--~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL----~D~d~ 204 (883)
+.-+.-+..+.++. .++ +..++..+ +.+...+.||.-+.....++...+|+... ..+.+.+..++ .|.+.
T Consensus 151 ~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~-~~~~~~~~~l~~e~~~~~~~ 226 (778)
T 3opb_A 151 YLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFD-KAVVDFMSSLIVEAEIDVGN 226 (778)
T ss_dssp HHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHhhccCCCC
Confidence 34445555566553 355 55555553 23667889999999999999998887654 34556666566 34334
Q ss_pred hHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHH
Q psy2915 205 MVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLT 284 (883)
Q Consensus 205 ~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~ 284 (883)
.-...++.++..+.+--|.... .+...++..-.+++... +..+..+ ...++++++..--+.....-..
T Consensus 227 ~~~~~~~~~l~~lfPi~p~~~s---~lfl~e~~~~~l~~~~~-------~~~~~~~--~~a~L~lLsaACi~~~cR~~I~ 294 (778)
T 3opb_A 227 DPLSIIVKTLSELYPSLTTLCS---EIFLTKGLSKLFKKRVF-------EEQDLQF--TKELLRLLSSACIDETMRTYIT 294 (778)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHH---HHHSTTTHHHHHHHHHH-------SSCCHHH--HHHHHHHHHHHCCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCHHHHH---HHHccccHHHHHHHHHh-------cccchHH--HHHHHHHHHHHhCCcHHHHHHH
Confidence 4455677777777665543320 00000011111111100 0111111 1112222222111222233334
Q ss_pred HHHhHHHHHhhcCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHh
Q psy2915 285 KKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEY 364 (883)
Q Consensus 285 ~~~~~~L~~lL~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~ 364 (883)
..+++.|...+++ ..+|..|+-.+.++....+. ....+..+.+.+.++
T Consensus 295 ~~~~~~L~~~l~~-~~ir~lAavvL~KL~~~~~~-------------------------------~~~si~~La~~~~~~ 342 (778)
T 3opb_A 295 ENYLQLLERSLNV-EDVQIYSALVLVKTWSFTKL-------------------------------TCINLKQLSEIFINA 342 (778)
T ss_dssp HHHHHHHHHHTTS-GGGHHHHHHHHHHHTGGGTC-------------------------------TTCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCC-------------------------------CcCcHHHHHHHHHHH
Confidence 4455555555543 45666666666665543210 122344555666666
Q ss_pred hhhcCHHHHHHHHHHHHHHHhhchhhH------HHHHHHHHHHHHhH-hhhhhCCHHHHHHHHhhhhc------------
Q psy2915 365 ATEVDVDFVRKAVRAIGRCAIKVEQSA------ERCVSTLLDLIQTK-YAERIDNADELLESFLEGFH------------ 425 (883)
Q Consensus 365 ~~~~d~~~r~~ai~aI~~la~k~~~~~------~~~v~~Ll~lL~~~-~~~~i~~~~~il~~l~~~~~------------ 425 (883)
+...+.+-++-++..++.+..+ |... ..++..|+++++.. .....-.+..++..+.+...
T Consensus 343 L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L 421 (778)
T 3opb_A 343 ISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXX 421 (778)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----
T ss_pred HhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhh
Confidence 6555544466666666666532 2211 34555666666541 00000001111111111110
Q ss_pred -------------CCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhh
Q psy2915 426 -------------DENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLH 492 (883)
Q Consensus 426 -------------~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~ 492 (883)
+..+.-..+-++..-+-..... ..++.+...+.++ ++.+|+.|...+.-++.+++..
T Consensus 422 k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea----GvIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R---- 491 (778)
T 3opb_A 422 XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT----ELISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFI---- 491 (778)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHTTTT----THHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGH----
T ss_pred hhhccccCcccCcccccccchHHHHHHHHHHHHHC----cCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHH----
Confidence 0011111112222211111211 2455555655554 6888988876666665553211
Q ss_pred hhHHHHHhhccCCCcccchHHHHHhhcccchh---HHHHHHHHHHhhc-cCCchhh------HhHHHHHHhhcCC-CC-H
Q psy2915 493 LTRLVIASMTVGKDVSALFPDVVNCMQTDNLE---LKKLVYLYLMNYA-KSHPDMA------IMAVNTFVKDCED-SN-P 560 (883)
Q Consensus 493 ~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~---~kr~~yl~~~~~~-~~~~~~~------~l~~n~l~kdl~~-~n-~ 560 (883)
..++. ..++..++.++.+.... .|..+..++..+. ..+|..+ .-++..|.+.|.. +. .
T Consensus 492 --~~lvq--------qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 492 --PQLAQ--------QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp --HHHHH--------TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred --HHHHH--------CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence 01110 12344455555554332 4556666665554 2233321 2466777777762 21 1
Q ss_pred ------------HHHH---HHHHHhcCCCh---hh----hhH--HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc-
Q psy2915 561 ------------LIRA---LAVRTMGCIRV---DK----ITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL- 615 (883)
Q Consensus 561 ------------~vr~---~AL~~L~~i~~---~~----~~~--~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~- 615 (883)
.-+. .||+.|+...+ ++ +.. ...+.+..++.+.++.||++|+.++..+.. .|+.
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i 640 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTI 640 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGT
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHH
Confidence 1133 45555555542 12 333 467889999999999999999999999986 4432
Q ss_pred ---ccc---cc---HHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHH
Q psy2915 616 ---VED---QG---FLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDS 686 (883)
Q Consensus 616 ---~~~---~~---~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~l 686 (883)
+-+ +. -++.|..+++.+|..++.+|..++..+....| .....+++.
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~----------~ia~~ll~~--------------- 695 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP----------LIAKELLTK--------------- 695 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH----------HHHHHHTTC---------------
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh----------HHHHHHHHc---------------
Confidence 111 11 15678889999999999999999999864321 222333321
Q ss_pred HhccCCCChHHHHHHHHHHhHhhcC--CChHHHHHHHHHHHHhhhhCC
Q psy2915 687 LSNYSPKDDREAQSICERITPRLAH--ANAAVVLSAVKVLMKLMEMLP 732 (883)
Q Consensus 687 L~~~~~~~~~~~~~il~~l~~~l~~--~~~aV~~eai~~i~~~~~~~~ 732 (883)
...++.+..++++ .+..++.-++.++.++.++.+
T Consensus 696 ------------~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 696 ------------KELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp ------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred ------------cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 1344555555555 677888888888888876543
No 55
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.73 E-value=2e-06 Score=81.07 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=159.8
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhh-hhhhHHHHHhhcCCchhhhhhhh
Q psy2915 415 ELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDL-RDRGFIYWRLLSTGNTFYILLHL 493 (883)
Q Consensus 415 ~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~ev-rdrA~~y~~ll~~~~~~~~~~~~ 493 (883)
+++..++..+.|.-|.||..+++-+..+...+|+-..+++..++.+...++ .-+. ++-|.-+-.+-...| +.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-aIpltqeIa~a~G~la~i~P------e~ 104 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMAKEKP------EL 104 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHCH------HH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHhHHHHhCH------HH
Confidence 467777777788899999999999999998999889999999999977774 4444 555544433333333 23
Q ss_pred hHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC
Q psy2915 494 TRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI 573 (883)
Q Consensus 494 l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i 573 (883)
+++++..+. ....-.+...|--...+++.....+|+++-.+..-+.--++|+|..-|..||.+++.+
T Consensus 105 v~~vVp~lf-------------anyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 105 VKSMIPVLF-------------ANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp HHHHHHHHH-------------HHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred HHhhHHHHH-------------HHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 333333221 1223345555544445678888889999999998899999999999999999999999
Q ss_pred Ch--hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 574 RV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 574 ~~--~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
|. ++.....+|-+..+|.|.+..||..|+.++.++....|..- ..+....+-++|....|+......+..+.-
T Consensus 172 Gen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklR---kii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 172 GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLR---KVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHH---HHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred hccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHH---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 76 55677788999999999999999999999999999888732 233333345678999999988888888763
No 56
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.72 E-value=0.00015 Score=90.65 Aligned_cols=121 Identities=10% Similarity=0.021 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhccCCc-hhhHhHHHHHHhhcCC-----CCHHHHHHHHHHhcCCCh------hhhhHHHHHHHHhhc-C
Q psy2915 525 LKKLVYLYLMNYAKSHP-DMAIMAVNTFVKDCED-----SNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCL-K 591 (883)
Q Consensus 525 ~kr~~yl~~~~~~~~~~-~~~~l~~n~l~kdl~~-----~n~~vr~~AL~~L~~i~~------~~~~~~l~~~l~~~l-~ 591 (883)
.|+-++-.+..+...-+ +....+.+.+..-+++ ++...|-+|+.+++.+.. ....+.+++.+..+. .
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~ 516 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYE 516 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCcc
Confidence 44445545444443333 3434444555444443 677889999999988743 123344555333333 2
Q ss_pred CCChHHHhhHHHHHHHHHhhc---ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 592 DEDPYVRKTAAVCVAKLYDIN---AQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 592 d~~~~VRk~A~~al~~l~~~~---~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
|++|.||.+|+.+++++.... |+.+ +.+++.+.+.| | +.|+.+|+.++..+++.
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRD 573 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence 679999999999999988743 3333 34556666666 4 89999999999999964
No 57
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.69 E-value=1.8e-05 Score=89.22 Aligned_cols=214 Identities=12% Similarity=0.134 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHhhccCCchhhH------hHHHHHHhhcCCCCHHHHHHHHHHhcCCCh---hhhhHH-----HHHHHH
Q psy2915 522 NLELKKLVYLYLMNYAKSHPDMAI------MAVNTFVKDCEDSNPLIRALAVRTMGCIRV---DKITEY-----LCEPLR 587 (883)
Q Consensus 522 ~~~~kr~~yl~~~~~~~~~~~~~~------l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~---~~~~~~-----l~~~l~ 587 (883)
+..+++-+..++..+...+++... -+++.|.+.|.++++.++..|..+|+++.. ++.... .+|.+.
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV 292 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHH
Confidence 345667777777776655442221 137888889999999999888888876632 332222 456777
Q ss_pred hh-cCCCChHHHhhHHHHHHHHHhhc----ccccccccHHHHHHHhhcCCCh----hHHHHHHHHHHHHHh---cCCCch
Q psy2915 588 KC-LKDEDPYVRKTAAVCVAKLYDIN----AQLVEDQGFLDQLKDLLSDSNP----MVVANAVAALSEMNE---ASTSGV 655 (883)
Q Consensus 588 ~~-l~d~~~~VRk~A~~al~~l~~~~----~~~~~~~~~~~~l~~lL~D~d~----~V~~~a~~~l~~i~~---~~~~~~ 655 (883)
++ +.+.++.+++.|+.++..+.... +........++.|.++|.+.+. .++..|+.+|..++. ..+
T Consensus 293 ~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~--- 369 (458)
T 3nmz_A 293 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE--- 369 (458)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH---
Confidence 75 45678899999999998887633 2222235678888888886554 388888888887763 111
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCCh
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEG 735 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~ 735 (883)
.....+. + ...++.+..++++.+..++-+|+.++..++ .+++
T Consensus 370 -------~~~~~i~---------------~-------------~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa---~~~~ 411 (458)
T 3nmz_A 370 -------DHRQILR---------------E-------------NNCLQTLLQHLKSHSLTIVSNACGTLWNLS---ARNP 411 (458)
T ss_dssp -------HHHHHHH---------------H-------------TTHHHHHHHHSSCSCHHHHHHHHHHHHHHH---SSCH
T ss_pred -------HHHHHHH---------------H-------------cccHHHHHHHHcCCChHHHHHHHHHHHHHH---cCCH
Confidence 1111111 1 145788888999999999999999999986 2334
Q ss_pred hhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch
Q psy2915 736 DFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD 776 (883)
Q Consensus 736 ~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~ 776 (883)
+....+++ .+.++|+.++. .++.++-.+...|..|+..+|.
T Consensus 412 ~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 412 KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 43343333 56788999886 5788999999999999887764
No 58
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.67 E-value=0.00029 Score=87.40 Aligned_cols=590 Identities=9% Similarity=0.084 Sum_probs=284.2
Q ss_pred cCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHH
Q psy2915 59 QTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVR 138 (883)
Q Consensus 59 ~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr 138 (883)
++.+...|+-+.-++..+- .+|+.-..+..- +.+ -...++.+|--|+.
T Consensus 18 p~sd~~~r~~A~~~L~~~q-~sp~aw~~~~~i------------------------------L~~-~~~~~~~vr~fa~~ 65 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLR-SSSTGWKICHEI------------------------------FSE-KTKYKPSTRLICLQ 65 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHH-HSTTHHHHHHHH------------------------------TTC-TTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH-cChhHHHHHHHH------------------------------HhC-CCCCCHHHHHHHHH
Confidence 3458899999999998864 457753333322 211 11127888888877
Q ss_pred HhccCC---chh----hhHHHHHHHHhhcC-----CCChhHHHHHHHHHHHHhhh-CccccccccHHHHHHHHhcCCCh-
Q psy2915 139 TMGCIR---VDK----ITEYLCEPLRKCLK-----DEDPYVRKTAAVCVAKLYDI-NAQLVEDQGFLDQLKDLLSDSNP- 204 (883)
Q Consensus 139 ~L~~i~---~~~----~~~~l~~~v~~~l~-----d~~~~VRk~A~~al~kl~~~-~p~~~~~~~~~~~L~~lL~D~d~- 204 (883)
+|-+.- .++ -...+...+...+. +..++||.+.+.++..++.. .|+.++ ++++.+..+++.+++
T Consensus 66 ~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~ 143 (980)
T 3ibv_A 66 TLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQS 143 (980)
T ss_dssp HHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc--hHHHHHHHHhcCCChh
Confidence 766421 122 22233333333332 35789999999999998874 688885 488888888875444
Q ss_pred hHHHHHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHH-HHHHHhhcCCCChhhHHHH
Q psy2915 205 MVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLK-VLMKLMEMLPGEGDFVSTL 283 (883)
Q Consensus 205 ~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~-~l~~l~~~~~~~~~~~~~~ 283 (883)
.+....+..|..+.++-.... + .........+ .+-+.+. .+-
T Consensus 144 ~~~~~~LriL~~i~EEv~~~~---------------------------~-~~~~~~~~r~~~lkd~m~---------~~~ 186 (980)
T 3ibv_A 144 EFSNFYLKVLLSIGDEIADSL---------------------------V-LKTDVQIQKDNLVKDAIR---------AND 186 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC---------------------------S-CCCHHHHHHHHHHHHHHH---------HHT
T ss_pred HHHHHHHHHHHHhHHHHHhcc---------------------------c-ccCHHHHhhhHHHHHHHH---------hcc
Confidence 333444444443332211000 0 0000000000 0000000 000
Q ss_pred HHHHhHHHHHhhcCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHH-----HHH
Q psy2915 284 TKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIA-----QVL 358 (883)
Q Consensus 284 ~~~~~~~L~~lL~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~-----~Il 358 (883)
+..+.+....+|. . |....+..++..+|+.+.....+-.+. .++
T Consensus 187 ~~~i~~~~~~iL~--------------~-----------------~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll 235 (980)
T 3ibv_A 187 MSDIVSFVYEMML--------------A-----------------YSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCM 235 (980)
T ss_dssp HHHHHHHHHHHHH--------------H-----------------HHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHH
T ss_pred HHHHHHHHHHHHH--------------H-----------------HhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHH
Confidence 1111111111110 0 001123445566666666666654443 345
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--hHhhhhhCCHHHHHHHHhhhhcCCCHHHHH---
Q psy2915 359 SELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ--TKYAERIDNADELLESFLEGFHDENTQVQL--- 433 (883)
Q Consensus 359 ~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~--~~~~~~i~~~~~il~~l~~~~~~~~~~vr~--- 433 (883)
+-+..++.+ +++|..++.++..+..+-.+ .+.-...+ ..+. ..|..... ..++.+...
T Consensus 236 ~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~-~~~k~~li-~~l~L~~~~~~l~~-------------~~~D~d~~~~la 298 (980)
T 3ibv_A 236 NLLYSFLQI--EELRCAACETMTEIVNKKMK-PLEKLNLL-NILNLNLFFSKSQE-------------QSTDPNFDEHVA 298 (980)
T ss_dssp HHHHHHTTS--HHHHHHHHHHHHHHHHSCCC-HHHHHHHH-HHHHHHHHHCC------------------CCHHHHHHHH
T ss_pred HHHHHHcCC--hHHHHHHHHHHHHHHHcCCC-hhhHHHHH-HHHhHHHHHHHHhc-------------ccccHHHHHHHH
Confidence 555555543 78999999999988876433 22222222 1121 11111110 012222211
Q ss_pred HHHH----HHHHHhhcCC------------chHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCC----ch----hhh
Q psy2915 434 QLLT----AIVKLFLKRP------------TDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTG----NT----FYI 489 (883)
Q Consensus 434 ~~L~----al~Kl~~~~~------------~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~----~~----~~~ 489 (883)
.+++ ++..+ ...+ +....+++.++.....+ ++||-..+..+|.-+-.. +. ...
T Consensus 299 ~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~ 375 (980)
T 3ibv_A 299 KLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESSSKELSAS 375 (980)
T ss_dssp HHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHH
T ss_pred HHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 1111 22222 2223 23445666666655554 678888886666533211 11 122
Q ss_pred hhhhhHHHHH----hhccCCCcccchH---HHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcC-
Q psy2915 490 LLHLTRLVIA----SMTVGKDVSALFP---DVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCE- 556 (883)
Q Consensus 490 ~~~~l~kli~----~~~~g~~~~~~~~---~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~- 556 (883)
.++.+.+++. .|.-..+..|.-. +--..+. ..-|+++ .....+....++.... +.+.+..-+.
T Consensus 376 ~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~---e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 376 LKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQ---EMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHH---HHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHccCCCccccccccchhHHHHHH---HHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 2233333333 3322222221100 0000000 1223444 5555555555655443 3334444443
Q ss_pred --CCCHHHHHHHHHHhcCCChh------------hhhHHHHHHHHhhcC-----CCChHHHhhHHHHHHHHHhhc---cc
Q psy2915 557 --DSNPLIRALAVRTMGCIRVD------------KITEYLCEPLRKCLK-----DEDPYVRKTAAVCVAKLYDIN---AQ 614 (883)
Q Consensus 557 --~~n~~vr~~AL~~L~~i~~~------------~~~~~l~~~l~~~l~-----d~~~~VRk~A~~al~~l~~~~---~~ 614 (883)
+.+...+-+||.+|+.+++. +..+.+.+.+.+++. +++|.||..++..++|.++.. |+
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~ 531 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA 531 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 34467788888887765331 223456666766654 899999999999999988854 43
Q ss_pred ccccccHHHHHHH--hhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc-CC---------------
Q psy2915 615 LVEDQGFLDQLKD--LLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE-CT--------------- 676 (883)
Q Consensus 615 ~~~~~~~~~~l~~--lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~-~~--------------- 676 (883)
.+ +...+.+.. .+.++++.|+.+|..++..+++..+. ...+..+..+..+...+.. ..
T Consensus 532 ~l--~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~ 607 (980)
T 3ibv_A 532 AI--PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSS 607 (980)
T ss_dssp TH--HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHH
T ss_pred hH--HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhh
Confidence 33 122333333 34478899999999999999976431 1222333444444443331 10
Q ss_pred -----hhhHHHHHHHHhccC---CCChHHHHH----HHHH----HhHhhcCC--C-hHHH--HHHHHHHHHhhhhCCCCh
Q psy2915 677 -----EWGQVFILDSLSNYS---PKDDREAQS----ICER----ITPRLAHA--N-AAVV--LSAVKVLMKLMEMLPGEG 735 (883)
Q Consensus 677 -----~w~qi~iL~lL~~~~---~~~~~~~~~----il~~----l~~~l~~~--~-~aV~--~eai~~i~~~~~~~~~~~ 735 (883)
.-.|..+.+.++.+. +.++++... ++++ +...++.. + ..+. -..+.++..++..++..+
T Consensus 608 ~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 608 IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 114677777777764 223333322 2333 23334322 1 1111 122333344433222110
Q ss_pred ---hhHHHHHHHhhhHHHHhcc---CCcchHHHHHHHHHHHHhhCchhH
Q psy2915 736 ---DFVSTLTKKLAPPLVTLLS---SEPEVQYVALRNINLIVQKRPDIL 778 (883)
Q Consensus 736 ---~l~~~~~~~~~~~L~~ll~---~~~niry~aL~~l~~l~~~~~~~~ 778 (883)
.-....+..+.+.+...++ ++..+|=.+...+.+++......+
T Consensus 688 ~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~ 736 (980)
T 3ibv_A 688 SEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM 736 (980)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH
Confidence 0022334444444443343 566788888888888777654433
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.66 E-value=1.3e-05 Score=91.29 Aligned_cols=338 Identities=12% Similarity=0.129 Sum_probs=221.5
Q ss_pred HHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHH
Q psy2915 455 QQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLM 534 (883)
Q Consensus 455 ~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~ 534 (883)
+.+.....++ ++++|..|.....-+..+.+. .+..+.. ..+.+.+++++.+++...++.+..++.
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~------~~~~i~~-------~g~i~~Lv~lL~s~~~~~~~~A~~aL~ 69 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDES------AKQQVYQ-------LGGICKLVDLLRSPNQNVQQAAAGALR 69 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSS------HHHHHHH-------TTHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChH------HHHHHHH-------cCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444443 688888887777766543221 1111111 235777889999999999988888888
Q ss_pred hhccCCchhhHhH-----HHHHHhhcC-CCCHHHHHHHHHHhcCCCh-----hhhhHHHHHHHHhhc--------CC---
Q psy2915 535 NYAKSHPDMAIMA-----VNTFVKDCE-DSNPLIRALAVRTMGCIRV-----DKITEYLCEPLRKCL--------KD--- 592 (883)
Q Consensus 535 ~~~~~~~~~~~l~-----~n~l~kdl~-~~n~~vr~~AL~~L~~i~~-----~~~~~~l~~~l~~~l--------~d--- 592 (883)
.+...+++....+ ++.|.+-|. ++++.++..|..+|+++.. ..+.+..+|.+.+++ .+
T Consensus 70 nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-----
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccc
Confidence 8876655544443 678888898 8899999999888886622 223446778888888 22
Q ss_pred -----CChHHHhhHHHHHHHHHhhccc---ccccc-cHHHHHHHhhcC------CChhHHHHHHHHHHHHHhc----CCC
Q psy2915 593 -----EDPYVRKTAAVCVAKLYDINAQ---LVEDQ-GFLDQLKDLLSD------SNPMVVANAVAALSEMNEA----STS 653 (883)
Q Consensus 593 -----~~~~VRk~A~~al~~l~~~~~~---~~~~~-~~~~~l~~lL~D------~d~~V~~~a~~~l~~i~~~----~~~ 653 (883)
.++.|.+.|+.++..+... |+ .+.+. ..++.|..+|.+ .+..++.+|+..+..+... .+.
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~ 228 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred hhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcc
Confidence 3567788999999999864 33 22232 677888888863 4666777777777665410 000
Q ss_pred --------------------------------------------c-hhhHHhcHHHHHHHHHHccc-CChhhHHHHHHHH
Q psy2915 654 --------------------------------------------G-VALIEMNAQTINKLLTALNE-CTEWGQVFILDSL 687 (883)
Q Consensus 654 --------------------------------------------~-~~~~~l~~~~~~~L~~~l~~-~~~w~qi~iL~lL 687 (883)
+ ..-+-+....+..++..+.. .++-.+......|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL 308 (457)
T 1xm9_A 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308 (457)
T ss_dssp HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 0 00011223445556665543 3566777778888
Q ss_pred hccCCCChH---HH-------HHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccC-C
Q psy2915 688 SNYSPKDDR---EA-------QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-E 756 (883)
Q Consensus 688 ~~~~~~~~~---~~-------~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-~ 756 (883)
..++..+.. .. ...++.+..++++.+..|+.+|+.++.+++. +++....+-....++|+.++.. +
T Consensus 309 ~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~----~~~~~~~i~~~~i~~Lv~lL~~~~ 384 (457)
T 1xm9_A 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR----HPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT----SGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc----CHHHHHHHHHhhhHHHHHhccCCC
Confidence 887653321 11 1356788999999999999999999999962 3344444445788999999874 3
Q ss_pred c------chHHHHHHHHHHHHhhCchhHh---hc--cc-eeEEccCC-CHHHHHHHHHHHHHhccccch
Q psy2915 757 P------EVQYVALRNINLIVQKRPDILK---HE--MK-VFFVKYND-PIYVKLEKLDIMIRLASQANI 812 (883)
Q Consensus 757 ~------niry~aL~~l~~l~~~~~~~~~---~~--~~-~~~~l~~d-d~~Ir~~~l~lL~~l~~~~N~ 812 (883)
+ ++...++..+..++...++... ++ ++ ....+.++ +..|+++|..+|..+...+..
T Consensus 385 ~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 385 GNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 3 4777888888888876665322 21 32 22345566 789999999999999876543
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.65 E-value=0.00097 Score=82.89 Aligned_cols=107 Identities=9% Similarity=0.097 Sum_probs=78.3
Q ss_pred hhhHhHHHHHHhhcCC--CCHHHHHHHHHHhcCCCh-------hhhhHHHHHHHHhhcC-----CCChHHHhhHHHHHHH
Q psy2915 542 DMAIMAVNTFVKDCED--SNPLIRALAVRTMGCIRV-------DKITEYLCEPLRKCLK-----DEDPYVRKTAAVCVAK 607 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~--~n~~vr~~AL~~L~~i~~-------~~~~~~l~~~l~~~l~-----d~~~~VRk~A~~al~~ 607 (883)
+....+.+.+.+.+.+ .+...|-+|+-++|.+.+ ....+.+++.+..++. |+.+.||..++.++++
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5555667777776665 567888888888887632 2245566777777765 4677899999999998
Q ss_pred HHhh---cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 608 LYDI---NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 608 l~~~---~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
..+. +|+.+ +..++.+-+.+.|++|+|..+|+.++..++..
T Consensus 527 y~~wl~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 7763 55555 24556666667788999999999999999964
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.64 E-value=1.4e-08 Score=94.63 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=63.4
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 590 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l 590 (883)
...+++++.++++.+|..+..+++.+++. .++.+.+.++|+++.+|..|+.+|+.+++++. ++.+.+++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE-------AFEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST-------THHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch-------HHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Confidence 44445566666666665555555544332 13556666666666666666666666665443 33344455
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALS 645 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~ 645 (883)
.|++|.||..|+.+++++. ++..++.|..+++|+|+.|+.+|+.+|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5666666666666666552 1233456666666666666666666554
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.63 E-value=3.8e-05 Score=90.31 Aligned_cols=459 Identities=15% Similarity=0.119 Sum_probs=238.2
Q ss_pred hHHHHHhh---cCChhHHHHHHHHHHHHHhhCchhHHhcc-cceee-c-------cCCCHHHHHHHHHHHHHhcC-----
Q psy2915 288 APPLVTLL---SSEPEVQYVALRNINLIVQKRPDILKHEM-KVFFV-K-------YNDPIYVKLEKLDIMIRLAS----- 350 (883)
Q Consensus 288 ~~~L~~lL---~~~~~vr~~aL~~l~~l~~~~~~~~~~~~-~~~~~-l-------~~~~~~Ir~~aL~iL~~l~~----- 350 (883)
+..|++.+ .+++++|-.+|-.+.++.+.+++-+...+ +.+.. + .+++.-+--.++..++-++.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~ 249 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSE 249 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHH
Confidence 34455555 36779999999999999998887666543 22221 1 45556566677776665542
Q ss_pred ----hhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcC
Q psy2915 351 ----QANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHD 426 (883)
Q Consensus 351 ----~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~ 426 (883)
+.-++.+.+.+. +..+..+...+.+.+...+.. ..-++|+..-.+++|.. .+.
T Consensus 250 lfl~e~~~~~l~~~~~---~~~~~~~~~a~L~lLsaACi~-~~cR~~I~~~~~~~L~~------------------~l~- 306 (778)
T 3opb_A 250 IFLTKGLSKLFKKRVF---EEQDLQFTKELLRLLSSACID-ETMRTYITENYLQLLER------------------SLN- 306 (778)
T ss_dssp HHSTTTHHHHHHHHHH---SSCCHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHH------------------HTT-
T ss_pred HHccccHHHHHHHHHh---cccchHHHHHHHHHHHHHhCC-cHHHHHHHHhHHHHHHH------------------Hhc-
Confidence 222222222221 234555666666666554432 22234433333333322 111
Q ss_pred CCHHHHHHHHHHHHHHhhcCC---chHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhh----hhhhhhHHHHH
Q psy2915 427 ENTQVQLQLLTAIVKLFLKRP---TDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFY----ILLHLTRLVIA 499 (883)
Q Consensus 427 ~~~~vr~~~L~al~Kl~~~~~---~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~----~~~~~l~kli~ 499 (883)
+..+|..++..++|++...+ ....++...+.++..++ +.+-|+.|.+-++.++.+++.- .-...+++++.
T Consensus 307 -~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ 383 (778)
T 3opb_A 307 -VEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRR--IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLT 383 (778)
T ss_dssp -SGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHH
Confidence 24678888999999886532 23566666677776664 3555899999888888776432 11233555555
Q ss_pred hhccCCCcc--cchHHH-HHhhcccch---hHHHHHHHHHHhhccC-------Cch----------------hhHhHHHH
Q psy2915 500 SMTVGKDVS--ALFPDV-VNCMQTDNL---ELKKLVYLYLMNYAKS-------HPD----------------MAIMAVNT 550 (883)
Q Consensus 500 ~~~~g~~~~--~~~~~v-i~ll~s~~~---~~kr~~yl~~~~~~~~-------~~~----------------~~~l~~n~ 550 (883)
......+.+ .+...+ .++..+.+. ..+.+.++. .|.+. +++ .-.=+++.
T Consensus 384 llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk--~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~ 461 (778)
T 3opb_A 384 MIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXX--XXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISF 461 (778)
T ss_dssp HHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------------------CCTHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhh--hhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHH
Confidence 554312211 111222 223332221 011211111 11100 000 00014555
Q ss_pred HHhhcCCCCHHHHHHHHHHhcCCCh-hh-----hhHHHHHHHHhhcCCCChH---HHhhHHHHHHHHHh-hcccccc---
Q psy2915 551 FVKDCEDSNPLIRALAVRTMGCIRV-DK-----ITEYLCEPLRKCLKDEDPY---VRKTAAVCVAKLYD-INAQLVE--- 617 (883)
Q Consensus 551 l~kdl~~~n~~vr~~AL~~L~~i~~-~~-----~~~~l~~~l~~~l~d~~~~---VRk~A~~al~~l~~-~~~~~~~--- 617 (883)
|...+.++++.+|..|+++|.++.. ++ ..+..++.+...+.+..+. +|..|+.|+.++.- .+|..+-
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~ 541 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY 541 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC
Confidence 6666666677777777776666522 22 1122345555566554433 67777777776653 2222211
Q ss_pred -cccHHHHHHHhhcC-CCh-------------hHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHH
Q psy2915 618 -DQGFLDQLKDLLSD-SNP-------------MVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVF 682 (883)
Q Consensus 618 -~~~~~~~l~~lL~D-~d~-------------~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~ 682 (883)
....++.|.++|.. .+. .-+..|+.+|+.++.. |+++. +-.+.+
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~-~~n~~--------------------E~~r~~ 600 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS-ETSDG--------------------EEVCKH 600 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC-CSHHH--------------------HHHHHH
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC-Ccccc--------------------hHHHHH
Confidence 01355666666651 111 0145666666666543 11000 000111
Q ss_pred HHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCC-hhhH----HHHHHHhhhHHHHhcc-CC
Q psy2915 683 ILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGE-GDFV----STLTKKLAPPLVTLLS-SE 756 (883)
Q Consensus 683 iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~-~~l~----~~~~~~~~~~L~~ll~-~~ 756 (883)
+++ ....++.+..++.+.|..|..+|+.+++++...-..- .++. +...+ -.++|+.|++ .+
T Consensus 601 Ii~------------~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~-rL~lLV~Ll~s~D 667 (778)
T 3opb_A 601 IVS------------TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR-NFNILVKLLQLSD 667 (778)
T ss_dssp HHH------------SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH-HHHHHHHGGGCSC
T ss_pred HHH------------hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc-cHHHHHHHHcCCC
Confidence 111 0145788888999999999999999999996211100 0111 11111 1456778887 57
Q ss_pred cchHHHHHHHHHHHHhhCchhHh----hc--cce-eEEccC--CCHHHHHHHHHHHHHhcc
Q psy2915 757 PEVQYVALRNINLIVQKRPDILK----HE--MKV-FFVKYN--DPIYVKLEKLDIMIRLAS 808 (883)
Q Consensus 757 ~niry~aL~~l~~l~~~~~~~~~----~~--~~~-~~~l~~--dd~~Ir~~~l~lL~~l~~ 808 (883)
.++|-.|.-.+.-+...+|.... .. ++. +..+.+ ++..+|.+++-+++.|+.
T Consensus 668 ~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 668 VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 78999998888887665654322 21 111 223333 688888888888888886
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.63 E-value=2.6e-05 Score=90.19 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=79.7
Q ss_pred chhhhchhcCCCCHHHHHHHHHHhccCCc--hh----hhH-HHHHHHHhhcCCCChhHHHHHHHHHHHHhhh-Cc---cc
Q psy2915 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRV--DK----ITE-YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-NA---QL 185 (883)
Q Consensus 117 ~~~~l~kDL~~~n~~vr~lALr~L~~i~~--~~----~~~-~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~-~p---~~ 185 (883)
+++.+.+-|.++++.++..|..+|.++.. ++ +.+ -.++.++++|.++++.|+..|+.|+..+-.. ++ ..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 46678889999999999988888877642 22 222 2568889999999999999999999998752 23 23
Q ss_pred cccccHHHHHHHHhcC-CChhHHHHHHHHHHhccc
Q psy2915 186 VEDQGFLDQLKDLLSD-SNPMVVANAVAAILLLPR 219 (883)
Q Consensus 186 ~~~~~~~~~L~~lL~D-~d~~V~~~a~~~L~ei~~ 219 (883)
+.+.+.++.|.++|.. .+..++..|..+|..+..
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 4456778999999986 688888898888887764
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.63 E-value=3.1e-07 Score=92.62 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=118.2
Q ss_pred CCCcccchHHHHhhccCCChhHHHHHHHHHHHhhccCCcchhhhcccccccccCccchhhhccccccccccccchhhhch
Q psy2915 44 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVK 123 (883)
Q Consensus 44 G~~~~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k 123 (883)
|++....++.++.++.++|..++.-+-..+.++...+++..-.+... -+++.+.+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-------------------------g~i~~L~~ 61 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-------------------------GALPALVQ 61 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-------------------------THHHHHHH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-------------------------CCHHHHHH
Confidence 45566778888899999999999999999988876666543333332 35666888
Q ss_pred hcCCCCHHHHHHHHHHhccCC--chhhhH-----HHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCcccc---ccccHHH
Q psy2915 124 DCEDSNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV---EDQGFLD 193 (883)
Q Consensus 124 DL~~~n~~vr~lALr~L~~i~--~~~~~~-----~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~---~~~~~~~ 193 (883)
-|+++++.+|..|+.+|+++. .++..+ ..++.+.+++.++++.||+.|+.++..+....++.. .+.+.++
T Consensus 62 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 141 (210)
T 4db6_A 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHH
Confidence 999999999999999999985 333322 256788899999999999999999999987555432 2466889
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhccccC
Q psy2915 194 QLKDLLSDSNPMVVANAVAAILLLPRKS 221 (883)
Q Consensus 194 ~L~~lL~D~d~~V~~~a~~~L~ei~~~~ 221 (883)
.|.+++.++++.++..|+.+|..++...
T Consensus 142 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 142 ALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987643
No 65
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.62 E-value=1.2e-08 Score=95.09 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=63.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHH
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLK 626 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~ 626 (883)
..+.+.+.++|+++.+|..|+.+|+.++++. ++.+.+++.|++|.||..|+.+++++. ++..++.|.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~--------~~~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcC--------CHHHHHHHH
Confidence 3456677788888888888888888887764 256777788888888888888887652 123457777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHh
Q psy2915 627 DLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 627 ~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
.+|.|+|+.||..|+.+|..+..
T Consensus 80 ~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 80 KLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888888863
No 66
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.61 E-value=0.00045 Score=86.42 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHHHhhccCCc----hhhHhHHHHHHhhcC--CCCHHHHHHHHHHhcCC-----ChhhhhHHHHHHHHhh
Q psy2915 521 DNLELKKLVYLYLMNYAKSHP----DMAIMAVNTFVKDCE--DSNPLIRALAVRTMGCI-----RVDKITEYLCEPLRKC 589 (883)
Q Consensus 521 ~~~~~kr~~yl~~~~~~~~~~----~~~~l~~n~l~kdl~--~~n~~vr~~AL~~L~~i-----~~~~~~~~l~~~l~~~ 589 (883)
.+|..+..+..+++.+++.-+ +....+++ +.-.+. |++|.+|..|+.++|.+ ..++..+.+++.+.+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678888888888888765422 12222334 333444 46899999999999976 3356788888888888
Q ss_pred cCCCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcC--CChhHHHHHHHHHHHHHhcCC
Q psy2915 590 LKDEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSD--SNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 590 l~d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D--~d~~V~~~a~~~l~~i~~~~~ 652 (883)
+ | |.|+..|+.++.++.+..+..+.. +.+++.+.+++.. -+..++..++.++..+...-|
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 8 4 889999999999999865544321 1344445556665 467899999999999986543
No 67
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.60 E-value=0.00018 Score=89.98 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=131.7
Q ss_pred hHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc------CCChhHHHHHHHHHHHHHhcC--CC--ch---hhHHhc
Q psy2915 595 PYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS------DSNPMVVANAVAALSEMNEAS--TS--GV---ALIEMN 661 (883)
Q Consensus 595 ~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~------D~d~~V~~~a~~~l~~i~~~~--~~--~~---~~~~l~ 661 (883)
+.+|++|..++..+....++.+. +.+.+.+.+.+. +.+...+.+|+.+++.++... ++ .. ....+.
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 46899999999999988875543 346677777776 677889999999999997431 10 01 111233
Q ss_pred HHHHHHHHHHcccC---ChhhHHHHHHHHhccCCC-ChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCC-----
Q psy2915 662 AQTINKLLTALNEC---TEWGQVFILDSLSNYSPK-DDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLP----- 732 (883)
Q Consensus 662 ~~~~~~L~~~l~~~---~~w~qi~iL~lL~~~~~~-~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~----- 732 (883)
+.....++..+.+. .|..+...+.++++|... .++....+++.+.+.+.+.+..|...|+.++..+.....
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~ 533 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP 533 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence 33333455555566 899999999999998754 344566788888888888889999999999999865321
Q ss_pred --C-ChhhHHHHHHHhhhHHHHhccCC---c-c--hHHHHHHHHHHHHhhCchhHhhcc--------ceeEE--ccCCCH
Q psy2915 733 --G-EGDFVSTLTKKLAPPLVTLLSSE---P-E--VQYVALRNINLIVQKRPDILKHEM--------KVFFV--KYNDPI 793 (883)
Q Consensus 733 --~-~~~l~~~~~~~~~~~L~~ll~~~---~-n--iry~aL~~l~~l~~~~~~~~~~~~--------~~~~~--l~~dd~ 793 (883)
. .++.+...+..+...|..++.+. | . ..-.++..+..++...++-+.++. ..+.. -..+++
T Consensus 534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~ 613 (960)
T 1wa5_C 534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP 613 (960)
T ss_dssp CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH
T ss_pred cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCc
Confidence 0 01111112223333344455442 1 1 223456666666654433333321 11111 123478
Q ss_pred HHHHHHHHHHHHhccccc
Q psy2915 794 YVKLEKLDIMIRLASQAN 811 (883)
Q Consensus 794 ~Ir~~~l~lL~~l~~~~N 811 (883)
..+...++.+..++...+
T Consensus 614 ~~~~~~~e~l~~l~~~~~ 631 (960)
T 1wa5_C 614 RFTHYTFESIGAILNYTQ 631 (960)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 888888888888877633
No 68
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.58 E-value=0.00018 Score=90.63 Aligned_cols=145 Identities=8% Similarity=0.071 Sum_probs=94.0
Q ss_pred hhhHhHHHHHHhhcCC--CCHHHHHHHHHHhcCCCh----h---hhhHHHHHHHHhhcC-----CCChHHHhhHHHHHHH
Q psy2915 542 DMAIMAVNTFVKDCED--SNPLIRALAVRTMGCIRV----D---KITEYLCEPLRKCLK-----DEDPYVRKTAAVCVAK 607 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~--~n~~vr~~AL~~L~~i~~----~---~~~~~l~~~l~~~l~-----d~~~~VRk~A~~al~~ 607 (883)
+....+.+.+.+-+++ .+...|-+|+.++|.+.+ + .+.+.+++.+..+.. |++|.||..++.++++
T Consensus 447 ~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr 526 (1049)
T 3m1i_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ 526 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 3445556666666653 567889999999998743 1 234555666555433 4677788788899997
Q ss_pred HHhh---cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhH--------HhcHHHHHHHHHHcccCC
Q psy2915 608 LYDI---NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI--------EMNAQTINKLLTALNECT 676 (883)
Q Consensus 608 l~~~---~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~--------~l~~~~~~~L~~~l~~~~ 676 (883)
+.+. +|+.+ +..++.+.+.+.|+++.|+.+|+.++..++...+ ..+. +..+..+..+...+.+.+
T Consensus 527 y~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~~~~~~~ 602 (1049)
T 3m1i_C 527 YPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQ 602 (1049)
T ss_dssp CHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSC
T ss_pred HHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHHHHHhCC
Confidence 7653 34444 2455666667889999999999999999997532 1222 345566666666655555
Q ss_pred hhhHHHHHHHHhcc
Q psy2915 677 EWGQVFILDSLSNY 690 (883)
Q Consensus 677 ~w~qi~iL~lL~~~ 690 (883)
+-....+++.++..
T Consensus 603 ~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 603 PQQVHTFYKACGII 616 (1049)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455566665554
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.57 E-value=1.1e-06 Score=90.90 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=146.8
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc--cccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcCCCchhhHHh
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE--DQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEASTSGVALIEM 660 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~--~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l 660 (883)
+.+.+.+.|++|.+|+.|+.++..+....|.... -.++++.+..++. |.++.|+..|+.++..++..-. ..+...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 4466778999999999999999999887554321 1357888888995 9999999999999999996421 234455
Q ss_pred cHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHH
Q psy2915 661 NAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVST 740 (883)
Q Consensus 661 ~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~ 740 (883)
.+..+..+++.+.+.++-.+......|..+....+ ...+++.+...+++.|+.|+.+++..+..+....++. .....
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~-~~~~~ 172 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT-ALNKK 172 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG-GCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC-CccHH
Confidence 66777888888888888877777777776654322 3478899999999999999999999999975433211 12234
Q ss_pred HHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch-hHhhccc
Q psy2915 741 LTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD-ILKHEMK 783 (883)
Q Consensus 741 ~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~-~~~~~~~ 783 (883)
.+..+.+.+..+++ +++++|-.+...+..+....++ .+.+++.
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 45667788887776 6889999999999999876654 3566554
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.52 E-value=2.1e-05 Score=74.19 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=161.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCC--ChhhhhHHHHHHHHhhc-CCCChHHHhhHHHHHHHHHhhcccccccccHHHHH
Q psy2915 549 NTFVKDCEDSNPLIRALAVRTMGCI--RVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQL 625 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~~L~~i--~~~~~~~~l~~~l~~~l-~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l 625 (883)
..+.+-|.|+-..||..|++.+..+ .-|++.+.+..-+.-.+ .|..-..-..-+.++|.+.+..|+.+. ..+|.+
T Consensus 35 ~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~--~vVp~l 112 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK--SMIPVL 112 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH--HHHHHH
T ss_pred HHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH--hhHHHH
Confidence 3344556677788999999988876 33666666665555554 367777778889999999999999884 577777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHH
Q psy2915 626 KDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERI 705 (883)
Q Consensus 626 ~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l 705 (883)
..=+.=+|+..+.+...+|.+|...+| .+.+..++.+...+.+++.-.....|.++..++-...+....+++.+
T Consensus 113 fanyrigd~kikIn~~yaLeeIaranP------~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 113 FANYRIGDEKTKINVSYALEEIAKANP------MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHHSCCCSHHHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHH
T ss_pred HHHHhcCCccceecHHHHHHHHHHhCh------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHH
Confidence 776667799999999999999998765 56678888999999899988899999999999998888888889999
Q ss_pred hHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHHHHh
Q psy2915 706 TPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQ 772 (883)
Q Consensus 706 ~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~l~~ 772 (883)
..+|.+.|..|+..|+.++.+++ ...|.++.-+..+ +-.+-.++.-+.+-+-..+.++..
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA---~~npklRkii~~k----l~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLA---TLNDKLRKVVIKR----LEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHH---TSCHHHHHHHHHH----HHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHH---HcCHHHHHHHHHH----HHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997 3444444432222 224444555677777777777654
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.52 E-value=1.4e-06 Score=90.26 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=75.5
Q ss_pred HHHHHHhhcC-CCChHHHhhHHHHHHHHHhhccccccc--ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhH
Q psy2915 582 LCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQLVED--QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI 658 (883)
Q Consensus 582 l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~~~~~--~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~ 658 (883)
+.+.+.+.+. |+++.||..|+.+++.+.+.....+.. ..+++.+...+.|+++.||.+|..++..+....+
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------ 130 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------ 130 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------
Confidence 3444445552 555555555555555555432221110 1244444445555555555555555555553311
Q ss_pred HhcHHHHHHHHHHcccCChhhHHHHHHHHhcc-C---CC--ChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCC
Q psy2915 659 EMNAQTINKLLTALNECTEWGQVFILDSLSNY-S---PK--DDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLP 732 (883)
Q Consensus 659 ~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~-~---~~--~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~ 732 (883)
....+..+...+.+.++..+..++.++..+ . |. .......+++.+.+++.+.++.|+-.|+.++..+...++
T Consensus 131 --~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 131 --LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 112233344444444444444444444442 1 11 122334778899999999999999999999998864444
No 72
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.48 E-value=5.6e-05 Score=85.98 Aligned_cols=341 Identities=12% Similarity=0.161 Sum_probs=208.1
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhh-----HhHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHH-
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMA-----IMAVNTFVKDCEDSNPLIRALAVRTMGCIR--VDKITEYL- 582 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~-----~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~~~~~~l- 582 (883)
...+++++.+++...+..+..++..+...+++.. .-.++.+.+.++++++.++..|..+|.++. +++....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567888888888888888888888765555432 225678889999999999999999988873 35655554
Q ss_pred ----HHHHHhhcC-CCChHHHhhHHHHHHHHHhhcc--cccccccHHHHHHHhh--------cC--------CChhHHHH
Q psy2915 583 ----CEPLRKCLK-DEDPYVRKTAAVCVAKLYDINA--QLVEDQGFLDQLKDLL--------SD--------SNPMVVAN 639 (883)
Q Consensus 583 ----~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~--~~~~~~~~~~~l~~lL--------~D--------~d~~V~~~ 639 (883)
+|.+.++|. ++++.++..|+.+|..+..... ..+.. ..++.|.++| .+ .++.+...
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 688999998 8899999999999999987521 11223 6778888888 22 36778889
Q ss_pred HHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc------CChhhHHHHHHHHhccC----------------------
Q psy2915 640 AVAALSEMNEASTSGVALIEMNAQTINKLLTALNE------CTEWGQVFILDSLSNYS---------------------- 691 (883)
Q Consensus 640 a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~------~~~w~qi~iL~lL~~~~---------------------- 691 (883)
|+.+|..++.. |+....+.-.+..+..|+..+.. .+.-.+...+.+|..+.
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 99999999865 32211111001334444444432 22222212222221111
Q ss_pred ----------CC--------------------ChHH---HHHHHHHHhHhhcCC-ChHHHHHHHHHHHHhhhhCCCChhh
Q psy2915 692 ----------PK--------------------DDRE---AQSICERITPRLAHA-NAAVVLSAVKVLMKLMEMLPGEGDF 737 (883)
Q Consensus 692 ----------~~--------------------~~~~---~~~il~~l~~~l~~~-~~aV~~eai~~i~~~~~~~~~~~~l 737 (883)
.. ...+ ....++.+..++++. ++.++-.|+.++.+++ .++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~---~~~~~~ 318 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT---ASKGLM 318 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---TCSSSH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc---cCcCcc
Confidence 00 0000 024466666677654 5677777889988885 221111
Q ss_pred ---H-HHHH--HHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhHhhccceeEEccCCCHHHHHHHHHHHHHhcccc
Q psy2915 738 ---V-STLT--KKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQA 810 (883)
Q Consensus 738 ---~-~~~~--~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~~l~~dd~~Ir~~~l~lL~~l~~~~ 810 (883)
. +.++ ....++|+.++. .+.+++.-+...+..+... +..- .-|...++.-|..+....
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~--------------~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLH--------------RVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGH--------------HHHHHHTHHHHHHTTTSC
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHH--------------HHHHHhhhHHHHHhccCC
Confidence 1 2233 246678888887 4678999998888887652 2210 122333444444444433
Q ss_pred chhh--hhHHHHHHHHHHHHHHhhCCCch-----HHHHHHHHhhcccCCcHHHHHHHHHHHhcCcCcc
Q psy2915 811 NIAQ--VNYVVQEAIVVIKDIFRKYPNKY-----ETIISTLCENLDTLDEPEARASMIWIIGEYAERI 871 (883)
Q Consensus 811 N~~~--~~~~~~e~i~~i~~l~~~~p~~~-----~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~ 871 (883)
+-.. .+.++..++..+..+....++.. ...++.|.+.+..-.++++++.+.|+|..|...-
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 2211 23344455556677766666532 3556777766654436889999999999997543
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.6e-06 Score=87.42 Aligned_cols=183 Identities=10% Similarity=0.141 Sum_probs=137.8
Q ss_pred HhhcccchhHHHHHHHHHHh-hccCCchhh------HhHHHHHHhhc-CCCCHHHHHHHHHHhcCCCh----h----hhh
Q psy2915 516 NCMQTDNLELKKLVYLYLMN-YAKSHPDMA------IMAVNTFVKDC-EDSNPLIRALAVRTMGCIRV----D----KIT 579 (883)
Q Consensus 516 ~ll~s~~~~~kr~~yl~~~~-~~~~~~~~~------~l~~n~l~kdl-~~~n~~vr~~AL~~L~~i~~----~----~~~ 579 (883)
+.++|++|..|+-++..+.. +....+++. .-+++.+.+-+ +|+|+.+|..|+++++.+.. + ...
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45789999999999999988 753322211 23578888899 79999999999999987522 2 455
Q ss_pred HHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhc-ccccc--cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchh
Q psy2915 580 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDIN-AQLVE--DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVA 656 (883)
Q Consensus 580 ~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~-~~~~~--~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~ 656 (883)
..++|.+...+.|+.+.||.+|..|+-.++... |.... -+.+++.+...|+..++.|+..++..+..+....+.+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~-- 180 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG-- 180 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc--
Confidence 668899999999999999999999999998854 32211 1357788888888899999999999999998653321
Q ss_pred hHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCC
Q psy2915 657 LIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 657 ~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~ 733 (883)
|..+...+ ...+++.+.+++.++++.|+-.|+.++..++..+|.
T Consensus 181 -----~~~l~~~l----------------------------~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 181 -----YSTLQRYL----------------------------KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp -----SHHHHHHH----------------------------TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred -----chhHHHHH----------------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 01111111 016688888899999999999999999998766665
No 74
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.40 E-value=0.00013 Score=84.32 Aligned_cols=343 Identities=15% Similarity=0.125 Sum_probs=219.0
Q ss_pred HHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHH
Q psy2915 453 LVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLY 532 (883)
Q Consensus 453 ~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~ 532 (883)
.++.+++...++ +++++..|..++..+...... .+..+.. ..+.+.+++++.+++..++..+..+
T Consensus 49 ~i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~------~k~~V~~-------~G~Ip~LV~LL~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 49 ELPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDK------VKTDVRK-------LKGIPVLVGLLDHPKKEVHLGACGA 113 (584)
T ss_dssp CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHH------HHHHHHH-------TTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred cHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChH------HHHHHHH-------cCCcHHHHHHHCCCCHHHHHHHHHH
Confidence 356666666554 799999998777766643221 1222221 2346778899999999999998888
Q ss_pred HHhhccC-CchhhHh-----HHHHHHhhcCC-CCHHHHHHHHHHhcCCCh-----hhhhHHHHHHHHhhc----------
Q psy2915 533 LMNYAKS-HPDMAIM-----AVNTFVKDCED-SNPLIRALAVRTMGCIRV-----DKITEYLCEPLRKCL---------- 590 (883)
Q Consensus 533 ~~~~~~~-~~~~~~l-----~~n~l~kdl~~-~n~~vr~~AL~~L~~i~~-----~~~~~~l~~~l~~~l---------- 590 (883)
+..+... +++-... +++.|.+.|.+ +++.++..|..+|.++.. ..+.+.-+|.+.+++
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccc
Confidence 8888763 3332222 46777788876 567777765544444321 223344456666654
Q ss_pred --------CCCChHHHhhHHHHHHHHHhhccc---ccc-cccHHHHHHHhhc------CCChhHHHHHHHHHHHHHhc--
Q psy2915 591 --------KDEDPYVRKTAAVCVAKLYDINAQ---LVE-DQGFLDQLKDLLS------DSNPMVVANAVAALSEMNEA-- 650 (883)
Q Consensus 591 --------~d~~~~VRk~A~~al~~l~~~~~~---~~~-~~~~~~~l~~lL~------D~d~~V~~~a~~~l~~i~~~-- 650 (883)
..+++.|++.|+-||..+...+++ .+. ....++.|..++. +.+...+.+|+.+|..++..
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 123679999999999999764432 111 1234556666654 35667888888888776632
Q ss_pred --CCC-------------------chhh-HHhcHHHHHHHHHHccc-CChhhHHHHHHHHhccCCCCh---HHH------
Q psy2915 651 --STS-------------------GVAL-IEMNAQTINKLLTALNE-CTEWGQVFILDSLSNYSPKDD---REA------ 698 (883)
Q Consensus 651 --~~~-------------------~~~~-~~l~~~~~~~L~~~l~~-~~~w~qi~iL~lL~~~~~~~~---~~~------ 698 (883)
.|. ++.. +-.-+..+..++..+.. .++..+......|..++..+. ...
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 111 1111 01123456667777643 468888888888888754331 111
Q ss_pred HHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCC---------cchHHHHHHHHHH
Q psy2915 699 QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE---------PEVQYVALRNINL 769 (883)
Q Consensus 699 ~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~---------~niry~aL~~l~~ 769 (883)
...++.|..++.+.+..|+..|+.++.+++... .....+-....+.|+.+|.+. .++...++..+.-
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~----~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDA----RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 255889999999999999999999999997322 222333346788899888742 3567778888888
Q ss_pred HHhhCchh---Hhhc--ccee-EEccCC--CHHHHHHHHHHHHHhccccchhh
Q psy2915 770 IVQKRPDI---LKHE--MKVF-FVKYND--PIYVKLEKLDIMIRLASQANIAQ 814 (883)
Q Consensus 770 l~~~~~~~---~~~~--~~~~-~~l~~d--d~~Ir~~~l~lL~~l~~~~N~~~ 814 (883)
|+...++. +.++ ++.+ .++.+. ...+++.|--+|+.|++.+....
T Consensus 430 L~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~ 482 (584)
T 3l6x_A 430 VIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRK 482 (584)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHH
Confidence 87766543 2221 3333 234442 78999999999999998777654
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.36 E-value=1.8e-05 Score=78.17 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=147.6
Q ss_pred ChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcc
Q psy2915 594 DPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALN 673 (883)
Q Consensus 594 ~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~ 673 (883)
+|.+|++.=.+. .+. +-+..+..+|.|.|+.|+.+|+.++.++.+.-|+- -....+...+..+++.+.
T Consensus 18 sWkiK~a~ela~-----~~e------~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-l~~~~~e~~Ld~iI~llk 85 (265)
T 3b2a_A 18 SWQILDAVSLAL-----EDK------RALFLILELAGEDDETTRLRAFVALGEILKRADSD-LRMMVLERHLDVFINALS 85 (265)
T ss_dssp TTCHHHHHHHHH-----HCH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTCC
T ss_pred HhhHHHHHHHHH-----hch------hHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHh
Confidence 788887654443 222 24588899999999999999999999999874432 223344566777777778
Q ss_pred cCChhhHHHHHHHHhcc---CCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHH
Q psy2915 674 ECTEWGQVFILDSLSNY---SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLV 750 (883)
Q Consensus 674 ~~~~w~qi~iL~lL~~~---~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~ 750 (883)
+.++=..++.++++..+ .|-+++.-.++...+...+.+.+.....+++..+..+. .... .+.+ ...+.
T Consensus 86 ~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk-v~~~----~~~V----~~~l~ 156 (265)
T 3b2a_A 86 QENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ-PLED----SKLV----RTYIN 156 (265)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSCC----CHHH----HHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC-cccc----hHHH----HHHHH
Confidence 88998888888888886 46677777889999999999999999999999999983 1221 2333 33344
Q ss_pred Hhcc-CCcchHHHHHHHHHHHHhhC--chhHhhcc-ceeEEccCCCHHHHHHHHHHHHHhccccchh
Q psy2915 751 TLLS-SEPEVQYVALRNINLIVQKR--PDILKHEM-KVFFVKYNDPIYVKLEKLDIMIRLASQANIA 813 (883)
Q Consensus 751 ~ll~-~~~niry~aL~~l~~l~~~~--~~~~~~~~-~~~~~l~~dd~~Ir~~~l~lL~~l~~~~N~~ 813 (883)
.++. +++.++-+|++.+..++... |+.+..-+ .+=+.+.++|++++.++|+.+..+.+..=.+
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~ 223 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE 223 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH
Confidence 5554 58899999999999998864 44444433 2223467789999999999999998874443
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.4e-05 Score=82.98 Aligned_cols=210 Identities=11% Similarity=0.177 Sum_probs=145.4
Q ss_pred HHhhcCCCChHHHhhHHHHHHH-HHhhccccc--c-c-ccHHHHHHHhh-cCCChhHHHHHHHHHHHHHhcCCCchhhH-
Q psy2915 586 LRKCLKDEDPYVRKTAAVCVAK-LYDINAQLV--E-D-QGFLDQLKDLL-SDSNPMVVANAVAALSEMNEASTSGVALI- 658 (883)
Q Consensus 586 l~~~l~d~~~~VRk~A~~al~~-l~~~~~~~~--~-~-~~~~~~l~~lL-~D~d~~V~~~a~~~l~~i~~~~~~~~~~~- 658 (883)
..+.+.+++|.-|+.|+.++.. +....|+.. . + .++++.+...+ +|.|+.|+..|+.++..++..-.. ..+-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence 4456789999999999999999 876556554 1 1 35677888888 799999999999999999864310 1122
Q ss_pred HhcHHHHHHHHHHcccCChhhHHHH---HHHHhc-cCCCChH-HHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCC
Q psy2915 659 EMNAQTINKLLTALNECTEWGQVFI---LDSLSN-YSPKDDR-EAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 659 ~l~~~~~~~L~~~l~~~~~w~qi~i---L~lL~~-~~~~~~~-~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~ 733 (883)
......+..++..+.+..+-.+-.+ +..+.. ..|.... ....+++.+...+++.|+.|+.+++.++..+....+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 3444566678888877765554443 333332 3232211 1347889999999999999999999999999765554
Q ss_pred ChhhHHHHH-HHhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCch-hHhhccceeEEccCCCHHHHHHHHHHH
Q psy2915 734 EGDFVSTLT-KKLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPD-ILKHEMKVFFVKYNDPIYVKLEKLDIM 803 (883)
Q Consensus 734 ~~~l~~~~~-~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~-~~~~~~~~~~~l~~dd~~Ir~~~l~lL 803 (883)
.+.-+...+ ..+.+.+..+++ +++++|=.+...+..+.....+ .+.+|+..+ + .+|++++.-.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L----d---~~k~~ki~~~ 245 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL----D---NLKRKKIEET 245 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS----C---HHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH----h---HHHHHHHHHH
Confidence 222223455 667888888776 6889999999999998876543 467766432 2 2566666543
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.20 E-value=0.00018 Score=81.02 Aligned_cols=305 Identities=12% Similarity=0.116 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHhHhhhhhCCHHHHHHHHhhhh--cC--------CCHHHHHHHHH
Q psy2915 369 DVDFVRKAVRAIGRCAIKVEQSAERC-VSTLLDLIQTKYAERIDNADELLESFLEGF--HD--------ENTQVQLQLLT 437 (883)
Q Consensus 369 d~~~r~~ai~aI~~la~k~~~~~~~~-v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~--~~--------~~~~vr~~~L~ 437 (883)
+++++.++..++..++...|...... ...++.+|..- ....+.+++.+...- .+ +-...+++++.
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~ 170 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI----RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVC 170 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHh----hhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHH
Confidence 46888889999988888776544332 22233333321 001111222222111 11 01123448888
Q ss_pred HHHHHhhcCCchHHH------HHHHHHHHhhc---------CCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhc
Q psy2915 438 AIVKLFLKRPTDTQE------LVQQVLSLATQ---------DSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMT 502 (883)
Q Consensus 438 al~Kl~~~~~~~~~~------~l~~ll~~~~~---------d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~ 502 (883)
+++++... + +.++ .++.++..... +..+++++..|...+..+..+.+. -+..+...
T Consensus 171 aL~nls~~-~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~------~k~~i~~~- 241 (458)
T 3nmz_A 171 VLMKLSFD-E-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA------NKATLCSM- 241 (458)
T ss_dssp HHHHHTTS-H-HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHC-
T ss_pred HHHHhcCC-H-HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc------cHHHHHHc-
Confidence 88888543 2 2222 23334444321 112477888888777766655321 11212110
Q ss_pred cCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccC-CchhhH-----hHHHHHHhh-cCCCCHHHHHHHHHHhcCCCh
Q psy2915 503 VGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKS-HPDMAI-----MAVNTFVKD-CEDSNPLIRALAVRTMGCIRV 575 (883)
Q Consensus 503 ~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~-~~~~~~-----l~~n~l~kd-l~~~n~~vr~~AL~~L~~i~~ 575 (883)
....+.+++++.+++..++..+..++..+... +++... -+++.|.+- +.++++.++..|+++|.++..
T Consensus 242 -----~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 242 -----KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp -----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 12356778888888888888888888777653 333211 245677775 466788899988888877643
Q ss_pred --hh----hh--HHHHHHHHhhcCCCCh----HHHhhHHHHHHHHHh---hccc---ccccccHHHHHHHhhcCCChhHH
Q psy2915 576 --DK----IT--EYLCEPLRKCLKDEDP----YVRKTAAVCVAKLYD---INAQ---LVEDQGFLDQLKDLLSDSNPMVV 637 (883)
Q Consensus 576 --~~----~~--~~l~~~l~~~l~d~~~----~VRk~A~~al~~l~~---~~~~---~~~~~~~~~~l~~lL~D~d~~V~ 637 (883)
++ +. ...+|.+.+++.++++ .|++.|+-++..+.. ..++ .+.+...++.|..+|.+++..++
T Consensus 317 ~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~ 396 (458)
T 3nmz_A 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396 (458)
T ss_dssp HCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHH
T ss_pred CCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHH
Confidence 22 22 2356888888887655 499999999988875 2332 33345678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHH
Q psy2915 638 ANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVV 717 (883)
Q Consensus 638 ~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~ 717 (883)
..|+.+|..++..++ .....+.+ ...++.|..++++.+..+.
T Consensus 397 ~~A~~aL~nLa~~~~----------~~~~~i~~----------------------------~G~I~~Lv~LL~s~~~~v~ 438 (458)
T 3nmz_A 397 SNACGTLWNLSARNP----------KDQEALWD----------------------------MGAVSMLKNLIHSKHKMIA 438 (458)
T ss_dssp HHHHHHHHHHHSSCH----------HHHHHHHH----------------------------HTHHHHHHTTTTCSSHHHH
T ss_pred HHHHHHHHHHHcCCH----------HHHHHHHH----------------------------CCCHHHHHHHHhCCCHHHH
Confidence 999999999985322 11112221 2568888889988899999
Q ss_pred HHHHHHHHHhhh
Q psy2915 718 LSAVKVLMKLME 729 (883)
Q Consensus 718 ~eai~~i~~~~~ 729 (883)
.+|+.++.++..
T Consensus 439 ~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 439 MGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999888863
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.17 E-value=4.4e-05 Score=83.36 Aligned_cols=218 Identities=15% Similarity=0.087 Sum_probs=146.8
Q ss_pred CHHHHHHHHHHhcCCC--hhh----h--hHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh-cc---cccccccHHHHHH
Q psy2915 559 NPLIRALAVRTMGCIR--VDK----I--TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-NA---QLVEDQGFLDQLK 626 (883)
Q Consensus 559 n~~vr~~AL~~L~~i~--~~~----~--~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-~~---~~~~~~~~~~~l~ 626 (883)
++.++..|..+|.++. +++ + ....+|.+.++|.++++.||..|+.+|..+... ++ +.+.+...++.|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 4667777777776652 221 2 134588999999999999999999999998753 22 3333456788888
Q ss_pred Hhh-cCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCC--hh--hHHHHHHHHhccCC---CChHHH
Q psy2915 627 DLL-SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECT--EW--GQVFILDSLSNYSP---KDDREA 698 (883)
Q Consensus 627 ~lL-~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~--~w--~qi~iL~lL~~~~~---~~~~~~ 698 (883)
++| ...++.++..|+.++..+....++.+.-+......+..|.+.+...+ +| .+.....+|..++. .+++..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 864 57789999999999999986322222222112345666777665443 34 33334444444432 222222
Q ss_pred H-----HHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHH
Q psy2915 699 Q-----SICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIV 771 (883)
Q Consensus 699 ~-----~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~ 771 (883)
. ..++.+..++++.+..++-+|+.++.+++ .++++-...+.+ .+.++|+.++. .++.+|-.+...|..|.
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa---~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS---ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT---SSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh---CCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2 35788899999999999999999999985 233443344433 56788999987 57789999999999999
Q ss_pred hhCchhHh
Q psy2915 772 QKRPDILK 779 (883)
Q Consensus 772 ~~~~~~~~ 779 (883)
...|...+
T Consensus 334 ~~~~~~~~ 341 (354)
T 3nmw_A 334 ANRPAKYK 341 (354)
T ss_dssp TTCCGGGC
T ss_pred cCCHHHHh
Confidence 88776543
No 79
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.15 E-value=0.024 Score=70.31 Aligned_cols=107 Identities=8% Similarity=0.124 Sum_probs=68.7
Q ss_pred hhhHhHHHHHHhhcCCC--CHHHHHHHHHHhcCC----Ch---hhhhHHHHHHHHhhcCCC-----ChHHHhhHHHHHHH
Q psy2915 542 DMAIMAVNTFVKDCEDS--NPLIRALAVRTMGCI----RV---DKITEYLCEPLRKCLKDE-----DPYVRKTAAVCVAK 607 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~~~--n~~vr~~AL~~L~~i----~~---~~~~~~l~~~l~~~l~d~-----~~~VRk~A~~al~~ 607 (883)
+....+...+.+.+.++ +...+-+++-++|.+ .. ....+.+++.+..+..++ .+.||......+++
T Consensus 473 ~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgr 552 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQ 552 (1073)
T ss_dssp HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhh
Confidence 33444566676665543 355554444444433 32 135566666666666544 45566666678887
Q ss_pred HHh---hcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 608 LYD---INAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 608 l~~---~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
..+ .+|+.++ ..+..+-+.+.|.+++|+.+|+.++..++.+
T Consensus 553 Y~~wl~~h~~~L~--~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 553 YPRFLRAHWKFLK--TVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp CHHHHHHCHHHHH--HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHhCHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 655 3666663 4566666777899999999999999999965
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.13 E-value=5e-05 Score=80.67 Aligned_cols=177 Identities=17% Similarity=0.108 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCCCh-hhhhHH-----HHHHHHh-hcCCCChHHHhhHHHHHHHHHhhcccc---cccccHHHHHHHhhc
Q psy2915 561 LIRALAVRTMGCIRV-DKITEY-----LCEPLRK-CLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFLDQLKDLLS 630 (883)
Q Consensus 561 ~vr~~AL~~L~~i~~-~~~~~~-----l~~~l~~-~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~~~l~~lL~ 630 (883)
.-|..|+..|..+.. .+.+.. .+|.+.. +|.++++.||..|+.+++.+...+|.. +.+...++.|..+|.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 345666666665422 222222 3466667 999999999999999999998766532 334567889999998
Q ss_pred -CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhh
Q psy2915 631 -DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRL 709 (883)
Q Consensus 631 -D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l 709 (883)
+.++.|+..|+.+|..++...+ .....+.+ ...++.|..++
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~----------~~~~~~~~----------------------------~ggi~~L~~lL 176 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQE----------AGLLQFLR----------------------------LDGFSVLMRAM 176 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCH----------HHHHHHHH----------------------------TTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCc----------HHHHHHHH----------------------------CCCHHHHHHHH
Confidence 5689999999999999986532 11112221 13577888888
Q ss_pred cCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHH-HhhhHHHHhcc-CCcchHHHHHHHHHHHHhhCchhH
Q psy2915 710 AHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLAPPLVTLLS-SEPEVQYVALRNINLIVQKRPDIL 778 (883)
Q Consensus 710 ~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~-~~~~~L~~ll~-~~~niry~aL~~l~~l~~~~~~~~ 778 (883)
++.+..|..+|+.++.+++.. +++....+++ .+.++|+.++. .++.++-.++..+..|+...+...
T Consensus 177 ~~~d~~v~~~A~~aLs~L~~~---~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 177 QQQVQKLKVKSAFLLQNLLVG---HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhC---ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 888999999999999998632 3344444444 67788888887 578899999999999988755443
No 81
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.05 E-value=0.0068 Score=75.59 Aligned_cols=180 Identities=11% Similarity=0.072 Sum_probs=111.7
Q ss_pred HHHHhccCCchhhhHHHHHHHHhhc----CCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHh---cCCChhHHH
Q psy2915 136 AVRTMGCIRVDKITEYLCEPLRKCL----KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL---SDSNPMVVA 208 (883)
Q Consensus 136 ALr~L~~i~~~~~~~~l~~~v~~~l----~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL---~D~d~~V~~ 208 (883)
.++.++.+...++.+.+.+.+.+.+ .++++..|-+|+.|++.+....++.. ..+++.+.+.+ .++++.|+.
T Consensus 430 ~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l~~~l~~l~~~~~~vr~ 507 (963)
T 2x19_B 430 TLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY--SDVVPGLIGLIPRISISNVQLAD 507 (963)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHHHHHGGGSCCCSHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh--hHHHHHHHHHHHhCCCCcHHHHH
Confidence 3555555555566677777777776 67788899999999998876544322 23444444433 245677777
Q ss_pred HHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHh
Q psy2915 209 NAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLA 288 (883)
Q Consensus 209 ~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 288 (883)
+++.++....+.- ... .+.+..+.
T Consensus 508 ~~~~~l~~~~~~l----------------------------------------------------~~~----~~~l~~vl 531 (963)
T 2x19_B 508 TVMFTIGALSEWL----------------------------------------------------ADH----PVMINSVL 531 (963)
T ss_dssp HHHHHHHHTHHHH----------------------------------------------------HHC----HHHHTTTH
T ss_pred HHHHHHHHHHHHH----------------------------------------------------HhC----HHHHHHHH
Confidence 7777777765321 000 11344455
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhh-
Q psy2915 289 PPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATE- 367 (883)
Q Consensus 289 ~~L~~lL~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~- 367 (883)
+.+...|.+ +.|+..|..++..++...+..+.+|+ +.+++.|...+..
T Consensus 532 ~~l~~~l~~-~~V~~~A~~al~~l~~~~~~~l~p~~------------------------------~~il~~l~~~l~~~ 580 (963)
T 2x19_B 532 PLVLHALGN-PELSVSSVSTLKKICRECKYDLPPYA------------------------------ANIVAVSQDVLMKQ 580 (963)
T ss_dssp HHHHHHTTC-GGGHHHHHHHHHHHHHHTGGGCTTTH------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHhhH------------------------------HHHHHHHHHHhccC
Confidence 566666644 88999999999999987765555542 3345555544432
Q ss_pred -cCHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHh
Q psy2915 368 -VDVDFVRKAVRAIGRCAIKVE-QSAERCVSTLLDLIQT 404 (883)
Q Consensus 368 -~d~~~r~~ai~aI~~la~k~~-~~~~~~v~~Ll~lL~~ 404 (883)
.+.+.+..+..+||.++...+ .....+++.++..+..
T Consensus 581 ~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~ 619 (963)
T 2x19_B 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQ 619 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 356788888999999886654 3344555555554443
No 82
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.00 E-value=5.2e-05 Score=80.58 Aligned_cols=144 Identities=14% Similarity=0.104 Sum_probs=106.2
Q ss_pred HHHHHHh-hcCCCCHHHHHHHHHHhcCCC--hhhhhHH-----HHHHHHhhcC-CCChHHHhhHHHHHHHHHhhccc---
Q psy2915 547 AVNTFVK-DCEDSNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLK-DEDPYVRKTAAVCVAKLYDINAQ--- 614 (883)
Q Consensus 547 ~~n~l~k-dl~~~n~~vr~~AL~~L~~i~--~~~~~~~-----l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~~~~--- 614 (883)
.++.+.+ .|+++++.+|..|+.+||++. +++..+. .+|.+.+++. ++++.||++|+.++..+.+.++.
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4566677 899999999999999999873 3443332 5578888887 56899999999999999876543
Q ss_pred ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCC
Q psy2915 615 LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKD 694 (883)
Q Consensus 615 ~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~ 694 (883)
.+.+...++.|..+|.++++.|+..|+.++..++...++. ...+.+
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~----------~~~vv~------------------------ 207 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH----------KGTLCS------------------------ 207 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----------HHHHHH------------------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHH----------HHHHHH------------------------
Confidence 3444567899999999999999999999999998753321 111111
Q ss_pred hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhh
Q psy2915 695 DREAQSICERITPRLAHANAAVVLSAVKVLMKLM 728 (883)
Q Consensus 695 ~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~ 728 (883)
..+++.+..++.+.+..|+-.|+.++..+.
T Consensus 208 ----~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 208 ----MGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp ----TTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 144666666666666677777777776665
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.92 E-value=0.00029 Score=69.62 Aligned_cols=178 Identities=12% Similarity=0.190 Sum_probs=128.4
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCc-----hHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhh
Q psy2915 417 LESFLEGFHDENTQVQLQLLTAIVKLFLKRPT-----DTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILL 491 (883)
Q Consensus 417 l~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~-----~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~ 491 (883)
+..+.+-+++.++.++..++.++.++..+.|+ ..++.++.++....+. |..|--+|.
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~--dEkval~A~---------------- 96 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE--NEKVTIKAL---------------- 96 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST--THHHHHHHH----------------
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc--chhHHHHHH----------------
Confidence 33333444677888888888888888776543 3445555555544332 444443333
Q ss_pred hhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhc
Q psy2915 492 HLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG 571 (883)
Q Consensus 492 ~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~ 571 (883)
.+++.++... +..++-..-+.+++..-++++|+..+--|...+|
T Consensus 97 r~L~~LLe~v------------------------------------pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lg 140 (265)
T 3b2a_A 97 RALGYLVKDV------------------------------------PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLS 140 (265)
T ss_dssp HHHHHHHTTC------------------------------------CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC------------------------------------CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhC
Confidence 2222222111 1223333456777777788999999999999999
Q ss_pred CCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh--cccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q psy2915 572 CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI--NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649 (883)
Q Consensus 572 ~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~--~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~ 649 (883)
.+......+.+...+.+++.+++++|+-+|..++..+... +|+.+ .+.+..+..+|+.+||.++--|+.++.++..
T Consensus 141 klkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 141 KLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred cCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9988888899999999999999999999999999999875 45555 3577889999999999999999999999986
Q ss_pred c
Q psy2915 650 A 650 (883)
Q Consensus 650 ~ 650 (883)
.
T Consensus 219 ~ 219 (265)
T 3b2a_A 219 F 219 (265)
T ss_dssp S
T ss_pred C
Confidence 5
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00037 Score=73.42 Aligned_cols=181 Identities=11% Similarity=0.136 Sum_probs=125.1
Q ss_pred HHHhhcccchhHHHHHHHHHHhhccCCchh---------hHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch-----
Q psy2915 514 VVNCMQTDNLELKKLVYLYLMNYAKSHPDM---------AIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV----- 575 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~---------~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~----- 575 (883)
+-+.+.|++|..|.-||-.+.......+.. ..-....+.+-+.|.|..+...|+.++..+ +.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 447899999999999999987764432111 122345788899999999999988887643 11
Q ss_pred ---hhhhHHHHHHHH-hhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcC
Q psy2915 576 ---DKITEYLCEPLR-KCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS 651 (883)
Q Consensus 576 ---~~~~~~l~~~l~-~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~ 651 (883)
...+..++|.+. +++.|+.+.+|..|..++..+....... ..+.+.+...+...+|.|+..++..+..+....
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 123455666655 5689999999999999998887643221 235577778889999999999998888877431
Q ss_pred CCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhC
Q psy2915 652 TSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEML 731 (883)
Q Consensus 652 ~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~ 731 (883)
. . + ..++ ......+++.+.+++.++++.|+-+|+++++.++-.+
T Consensus 171 g-~---------------~---~~~~-----------------k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 171 G-L---------------T---NVNV-----------------QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp T-T---------------T---TCCH-----------------HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred C-C---------------C---cCCc-----------------hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 0 0 0 0000 0011245677788899999999999999999997555
Q ss_pred CC
Q psy2915 732 PG 733 (883)
Q Consensus 732 ~~ 733 (883)
|.
T Consensus 215 G~ 216 (278)
T 4ffb_C 215 GN 216 (278)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.75 E-value=0.0013 Score=71.58 Aligned_cols=207 Identities=11% Similarity=0.146 Sum_probs=145.8
Q ss_pred chhHHHHHHHHHHhhccCCchhhHh------HHHHHHhhcCCCCHHHHHHHHHHhcCCC---hhhhhHH-----HHHHHH
Q psy2915 522 NLELKKLVYLYLMNYAKSHPDMAIM------AVNTFVKDCEDSNPLIRALAVRTMGCIR---VDKITEY-----LCEPLR 587 (883)
Q Consensus 522 ~~~~kr~~yl~~~~~~~~~~~~~~l------~~n~l~kdl~~~n~~vr~~AL~~L~~i~---~~~~~~~-----l~~~l~ 587 (883)
+..+++.+..++..+...+++.... +++.|.+.|.++++.++..|..+|+++. +++.... .+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 3456777777777776554422221 3788899999999999988888877663 2333222 467777
Q ss_pred hh-cCCCChHHHhhHHHHHHHHHhhcc----cccccccHHHHHHHhhcCCCh----hHHHHHHHHHHHHHh---cCCCch
Q psy2915 588 KC-LKDEDPYVRKTAAVCVAKLYDINA----QLVEDQGFLDQLKDLLSDSNP----MVVANAVAALSEMNE---ASTSGV 655 (883)
Q Consensus 588 ~~-l~d~~~~VRk~A~~al~~l~~~~~----~~~~~~~~~~~l~~lL~D~d~----~V~~~a~~~l~~i~~---~~~~~~ 655 (883)
++ +.++++.+++.|+.++..+....+ ........++.|.++|.++++ .++..|+.+|..++. ..++..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 76 467889999999999998876332 222245678999999986654 489999999988875 222211
Q ss_pred hhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcCCChHHHHHHHHHHHHhhh
Q psy2915 656 ALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAHANAAVVLSAVKVLMKLME 729 (883)
Q Consensus 656 ~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~~~~aV~~eai~~i~~~~~ 729 (883)
..+ .....+..|++.+...++-.+......|..+...+++... ..++.|..++++.+..++.+|+.++.++..
T Consensus 257 ~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 257 QIL-RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHH-HTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-HHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 111 1123466777888778888888899999998865554443 346788899999999999999999999863
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.69 E-value=0.0088 Score=68.64 Aligned_cols=73 Identities=21% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHhhhCccc-----cccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccc
Q psy2915 153 CEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL-----VEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQR 225 (883)
Q Consensus 153 ~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~-----~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~ 225 (883)
++.+..++...+.|||..|+.++..+....|+. +..+.-++.|..+|+|+...+|..|+.+|.++.+.++...
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 456677889999999999999999999888873 2245677999999999999999999999999998876655
No 87
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.59 E-value=0.043 Score=69.00 Aligned_cols=223 Identities=9% Similarity=0.072 Sum_probs=128.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCCh------------hhhhHHHHHHHHhhcC---CCC-----------------
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRV------------DKITEYLCEPLRKCLK---DED----------------- 594 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i~~------------~~~~~~l~~~l~~~l~---d~~----------------- 594 (883)
+.+.+.+-...++..++..|+.....+.. ..+...+++.+...+. |..
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~ 424 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKES 424 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccc
Confidence 34444444456677788888766544322 1233444444444432 111
Q ss_pred --hHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc--CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHH
Q psy2915 595 --PYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS--DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLT 670 (883)
Q Consensus 595 --~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~--D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~ 670 (883)
+..|+.+..++..++...++.+. +.+.+.+.+.+. ..++..+.+|+-+++.+...-... ..-.+.+..+..+..
T Consensus 425 d~~~~~~~~~~~L~~l~~~~~~~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~-~e~~~l~~v~~~l~~ 502 (1049)
T 3m1i_C 425 DTIQLYKSEREVLVYLTHLNVIDTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED-TEKRFVVTVIKDLLD 502 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHH-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCch-hhHHHHHHHHHHHHH
Confidence 14577888888888887776543 335566666665 367788999999999886432211 011223444444444
Q ss_pred Hccc-----CChhhHHHHHHHHhccCC---CChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCC--------
Q psy2915 671 ALNE-----CTEWGQVFILDSLSNYSP---KDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGE-------- 734 (883)
Q Consensus 671 ~l~~-----~~~w~qi~iL~lL~~~~~---~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~-------- 734 (883)
.... ..+-.+..++.++++|+. .+++....+++.+...+.+.++.|...|+.++..++...+..
T Consensus 503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~ 582 (1049)
T 3m1i_C 503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1049)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 2211 122233347778887753 244455677788888888889999999999999987432210
Q ss_pred -hhhHHHHHHHhhhHHHHhccC-CcchHHHHHHHHHHHHhhCc
Q psy2915 735 -GDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRP 775 (883)
Q Consensus 735 -~~l~~~~~~~~~~~L~~ll~~-~~niry~aL~~l~~l~~~~~ 775 (883)
..+.+..++.+. .++.+ +++-....++++..++...|
T Consensus 583 ~~p~~~~il~~l~----~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 583 SEPFIQTIIRDIQ----KTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp SSCHHHHHHHTHH----HHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHH----HHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 012344333333 33332 33345566778777776655
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.51 E-value=0.069 Score=67.86 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHhccCC-------chhhhHHHHHHHHhhcC-------CCChhHHHHHHHHHHHHhhhC-cccccccc
Q psy2915 126 EDSNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKCLK-------DEDPYVRKTAAVCVAKLYDIN-AQLVEDQG 190 (883)
Q Consensus 126 ~~~n~~vr~lALr~L~~i~-------~~~~~~~l~~~v~~~l~-------d~~~~VRk~A~~al~kl~~~~-p~~~~~~~ 190 (883)
.+.++.+|..|+..|-+.- .++-.+.+...+..++. +..++||.+.+.++..+.+.. |+.++ +
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ 134 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--D 134 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--T
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--H
Confidence 4567888888876665421 22333333344444432 256999999999999988754 87784 5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcccc
Q psy2915 191 FLDQLKDLLSDSNPMVVANAVAAILLLPRK 220 (883)
Q Consensus 191 ~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~ 220 (883)
+++.+.++++. ++.....++..|..++++
T Consensus 135 ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 135 MLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 88888888865 566677778877777654
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0024 Score=65.83 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=77.2
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHH---
Q psy2915 546 MAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFL--- 622 (883)
Q Consensus 546 l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~--- 622 (883)
..++.+..-+.|+.+.+|..+-..+-.+..---...+.+.+..++.++||.+|-..+..+..+...++-. . ...+
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~-~~~l~~~ 209 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-P-LKSLSVE 209 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-G-GGGGCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-c-cccccch
Confidence 3446666666777777777666555443222222346777888999999999999999999999865433 2 3467
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 623 DQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 623 ~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
+.+..++.|+|..||.+|+.++.++-..
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998764
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0026 Score=66.90 Aligned_cols=187 Identities=16% Similarity=0.108 Sum_probs=120.7
Q ss_pred HHhhcCCCChHHHhhHHHHHHHHHhhccccccc-------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCc----
Q psy2915 586 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED-------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSG---- 654 (883)
Q Consensus 586 l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~-------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~---- 654 (883)
+...+.|++|-.|+.|+..+.+++...+..... ..+.+.+...+.|.|..|+..++.++..+...-...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 456799999999999999999988754433211 124467788889999999999999999987532111
Q ss_pred hhhHHhcHHHHHHHHHH-cccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCC
Q psy2915 655 VALIEMNAQTINKLLTA-LNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPG 733 (883)
Q Consensus 655 ~~~~~l~~~~~~~L~~~-l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~ 733 (883)
..........+..++.. +.+..+-.....++.+..+..... ....+++.+...+.+.|+-|+.+++..+..+...++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 11122333444455554 556666555555555544321100 0125678888899999999999999999888654443
Q ss_pred ChhhHHHHHHHhhhHHHHhcc-CCcchHHHHHHHHHHHHhh
Q psy2915 734 EGDFVSTLTKKLAPPLVTLLS-SEPEVQYVALRNINLIVQK 773 (883)
Q Consensus 734 ~~~l~~~~~~~~~~~L~~ll~-~~~niry~aL~~l~~l~~~ 773 (883)
..--....+..+.+.+..+++ ++++||=.|...+..+-..
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 211012334455666666665 6899999999888776543
No 91
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.38 E-value=0.1 Score=57.35 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=109.3
Q ss_pred hHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhc
Q psy2915 511 FPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL 590 (883)
Q Consensus 511 ~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l 590 (883)
+..++... ..+...|+++.-++..|++.-|++..-++|++...+.|++..||..|++.|..+...+....+...+.++|
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 33444433 45688999999999999999999999999999999999999999999999999977688999999999999
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
...++.-+...=.++..+++.+|... +-..+..+.. ++..||.-++..+..-...
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~-~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQ-GEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-SCHHHHHHHHHHHHHHGGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcc-cchHHHHHHHHHHHHHHhh
Confidence 98888888888888888888887654 3344444444 4688999988888766543
No 92
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.35 E-value=0.0017 Score=64.93 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=94.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHh-hcCCCChHHHhhHHHHHHHHHh-hcccccccccHHHH
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRK-CLKDEDPYVRKTAAVCVAKLYD-INAQLVEDQGFLDQ 624 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~-~l~d~~~~VRk~A~~al~~l~~-~~~~~~~~~~~~~~ 624 (883)
.........+++...+|..|...|+.. . . .+.+++.++. ...|++|.||..++.++..++. .+|+.. ++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~-----l~~ 143 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA-----LPI 143 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT-----HHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH-----HHH
Confidence 335556667788899999999999988 3 2 3678888887 7789999999999999999996 788743 377
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHc-ccCChhhHHHHHHHHhccCCCCh
Q psy2915 625 LKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL-NECTEWGQVFILDSLSNYSPKDD 695 (883)
Q Consensus 625 l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l-~~~~~w~qi~iL~lL~~~~~~~~ 695 (883)
+.....|+|+.||..|...+.--+.. |. ..-.|..+..++..+ .+.+.+.|-.+=..|..|...+|
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~-~~----~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNR-PY----FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGS-TT----TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhcc-ch----hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 88899999999999999865432211 11 112223333333332 35566666666555555555555
No 93
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.33 E-value=0.00036 Score=71.56 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=115.3
Q ss_pred ccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhh
Q psy2915 330 KYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAER 409 (883)
Q Consensus 330 l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~ 409 (883)
+.|++..+|+.+...|. ...|...+.+.++.+|..++..+ ++.
T Consensus 59 l~d~~~~VR~~AA~~l~-----------~~~l~~L~~D~~~~VR~~aA~~L-------~~~------------------- 101 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP-----------VEALTPLIRDSDEVVRRAVAYRL-------PRE------------------- 101 (244)
T ss_dssp TTCSSHHHHHHHHTTSC-----------GGGGGGGTTCSSHHHHHHHHTTS-------CSG-------------------
T ss_pred hcCCCHHHHHHHHHhCC-----------HHHHHHHccCcCHHHHHHHHHHC-------CHH-------------------
Confidence 46777788887777431 12244556777888888777542 210
Q ss_pred hCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhh
Q psy2915 410 IDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYI 489 (883)
Q Consensus 410 i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~ 489 (883)
.+.....++++.||..+...+ +.. ++....+| .+++||..+.. .
T Consensus 102 ---------~L~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D-~d~~VR~~aA~--~---------- 145 (244)
T 1lrv_A 102 ---------QLSALMFDEDREVRITVADRL-------PLE-------QLEQMAAD-RDYLVRAYVVQ--R---------- 145 (244)
T ss_dssp ---------GGGGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTC-SSHHHHHHHHH--H----------
T ss_pred ---------HHHHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcC-CCHHHHHHHHH--h----------
Confidence 122334677888887766532 111 22333445 37888876652 0
Q ss_pred hhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHH
Q psy2915 490 LLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRT 569 (883)
Q Consensus 490 ~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~ 569 (883)
.+. ..+..++.++++.+|+.+... . .+ +.+...++|+++.||..|+..
T Consensus 146 -------------l~~------~~l~~l~~D~d~~VR~~aa~~---l---~~-------~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 146 -------------IPP------GRLFRFMRDEDRQVRKLVAKR---L---PE-------ESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp -------------SCG------GGGGGTTTCSCHHHHHHHHHH---S---CG-------GGGGGSTTCSSHHHHHHHHHH
T ss_pred -------------cCH------HHHHHHHcCCCHHHHHHHHHc---C---CH-------HHHHHHHcCCCHHHHHHHHHh
Confidence 000 112345667778887765543 1 11 234456789999999999988
Q ss_pred hcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHH
Q psy2915 570 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAL 644 (883)
Q Consensus 570 L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l 644 (883)
++. +.+..++.|++|.||+.++.+++ .+.+..| .|+++.|+.+|...|
T Consensus 194 l~~-----------~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 194 LRG-----------DDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp CCG-----------GGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CCH-----------HHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 521 34677789999999999999863 1556667 999999999987654
No 94
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.30 E-value=0.00036 Score=71.54 Aligned_cols=65 Identities=26% Similarity=0.249 Sum_probs=42.0
Q ss_pred hhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCC
Q psy2915 123 KDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDS 202 (883)
Q Consensus 123 kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~ 202 (883)
.-++|+++.+|..|.+.++ +. .+.+++.|+++.||..|+..+. + +.+..+++|+
T Consensus 57 ~ll~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~L~------~---------~~L~~ll~D~ 110 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYRLP------R---------EQLSALMFDE 110 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTTSC------S---------GGGGGTTTCS
T ss_pred HHhcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHHCC------H---------HHHHHHHcCC
Confidence 3357788888887777652 11 2445567888888888775421 1 2355677788
Q ss_pred ChhHHHHHHHH
Q psy2915 203 NPMVVANAVAA 213 (883)
Q Consensus 203 d~~V~~~a~~~ 213 (883)
|+.|+..+...
T Consensus 111 d~~VR~~aA~~ 121 (244)
T 1lrv_A 111 DREVRITVADR 121 (244)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 88887777764
No 95
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.27 E-value=0.071 Score=58.57 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=117.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCC
Q psy2915 426 DENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGK 505 (883)
Q Consensus 426 ~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~ 505 (883)
..+..+|.-+-.-+.|+|..+|+-..+++...+.+|.++ |..||-.|.-.+..+..+ + .+.|+..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDe--d~~IR~qaik~Lp~~ck~-~------~i~kiaD------ 103 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDE--DVSIRRQAIKELPQFATG-E------NLPRVAD------ 103 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHGGGGCCT-T------CHHHHHH------
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc--cHHHHHHHHHhhHHHhhh-h------hhhhHHH------
Confidence 446888988899999999999999999999999999886 788998887666666654 1 2233222
Q ss_pred CcccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhc--------CCChhh
Q psy2915 506 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG--------CIRVDK 577 (883)
Q Consensus 506 ~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~--------~i~~~~ 577 (883)
-+++++++++..+..++-.++..+.+.+|.. +.+.+...+..+++.+|--+++.|+ .+-+.|
T Consensus 104 -------vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~---tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E 173 (507)
T 3u0r_A 104 -------ILTQLLQTDDSAEFNLVNNALLSIFKMDAKG---TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKE 173 (507)
T ss_dssp -------HHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHH
T ss_pred -------HHHHHHhccchHHHHHHHHHHHHHHhcChHH---HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHH
Confidence 2367888899999999888988888887655 3455555666678999999999986 345588
Q ss_pred hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh
Q psy2915 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI 611 (883)
Q Consensus 578 ~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~ 611 (883)
+-+.+...+++.|.|-+. ..-.-++.+.+-.+.
T Consensus 174 ~E~~i~~~ikK~L~DVT~-~EF~L~m~lL~~lkl 206 (507)
T 3u0r_A 174 VEELILTESKKVLEDVTG-EEFVLFMKILSGLKS 206 (507)
T ss_dssp HHHHHHHHHHHHTTSCCH-HHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHhccccH-HHHHHHHHHHHhccc
Confidence 888899999999976432 333444444443343
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.19 E-value=0.014 Score=67.05 Aligned_cols=333 Identities=12% Similarity=0.101 Sum_probs=181.1
Q ss_pred HHHhhc-ccchhHHHHHHHHHHhhccCCchh-----hHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHH
Q psy2915 514 VVNCMQ-TDNLELKKLVYLYLMNYAKSHPDM-----AIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLR 587 (883)
Q Consensus 514 vi~ll~-s~~~~~kr~~yl~~~~~~~~~~~~-----~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~ 587 (883)
....++ +.-...||-+-+.+..+.+.-++. +.-.++.+++|- ++..+...+|.+|.++-.++-.+.-.
T Consensus 26 L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~---- 99 (651)
T 3grl_A 26 LCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVE---- 99 (651)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCccccc----
Confidence 333343 455778888988988887765432 233556666663 34455566777776542211111000
Q ss_pred hhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCC-chhhHHhcHHHHH
Q psy2915 588 KCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTS-GVALIEMNAQTIN 666 (883)
Q Consensus 588 ~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~-~~~~~~l~~~~~~ 666 (883)
+.++.-......-+...+ ..+++-++.|..+|+.+|..||..++.+|..++..+|+ .+.++--.|..+.
T Consensus 100 ----~~~~~~~~~~~~~~~d~f------~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 100 ----ENSTRQSEDLGSQFTEIF------IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp ------------CHHHHHHHHH------HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred ----ccccccchHHHHHHHHHH------HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 000000000111111111 12345568899999999999999999999999988775 4555555778899
Q ss_pred HHHHHcccCChhhHHHHHHHHhccCCCChHHHH-----HHHHHHhHhhcCC----ChHHHHHHHHHHHHhhhhCCCChhh
Q psy2915 667 KLLTALNECTEWGQVFILDSLSNYSPKDDREAQ-----SICERITPRLAHA----NAAVVLSAVKVLMKLMEMLPGEGDF 737 (883)
Q Consensus 667 ~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~l~~~----~~aV~~eai~~i~~~~~~~~~~~~l 737 (883)
+|+..|.+..+-.+...+-+|..+.+.+++-.. ...+.+..+++.. +..|+--|..++..+..+-+..+.+
T Consensus 170 ~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~ 249 (651)
T 3grl_A 170 RLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNF 249 (651)
T ss_dssp HHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999887763221 2345666665543 3478888888888885321111122
Q ss_pred HHHHHHHhhhHHHHhccCCcch----------HHHHHHHHHHHHhhCchh--Hhhcccee----------EEccCC--CH
Q psy2915 738 VSTLTKKLAPPLVTLLSSEPEV----------QYVALRNINLIVQKRPDI--LKHEMKVF----------FVKYND--PI 793 (883)
Q Consensus 738 ~~~~~~~~~~~L~~ll~~~~ni----------ry~aL~~l~~l~~~~~~~--~~~~~~~~----------~~l~~d--d~ 793 (883)
+.+ +...+.|..++..+++. -+.++..+..++...... -..++..+ ..+..+ +.
T Consensus 250 FrE--t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~ 327 (651)
T 3grl_A 250 FKE--GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA 327 (651)
T ss_dssp HHH--TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred HHH--cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence 221 13555556666532221 233445555554432110 11111111 111112 45
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHhhcccCCcHHHHHHHHHHHhcCcCccCC
Q psy2915 794 YVKLEKLDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEARASMIWIIGEYAERIDN 873 (883)
Q Consensus 794 ~Ir~~~l~lL~~l~~~~N~~~~~~~~~e~i~~i~~l~~~~p~~~~~~i~~L~~~l~~i~~~~~~~~~~w~lgey~~~~~~ 873 (883)
.||..++..+..++... ...||.+..+. --++.....++.-|...+...+..+.|.+++.++.-|....++
T Consensus 328 ~i~~~Al~tla~~irgN------~~~Q~~fa~~~---vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 328 DILTETINTVSEVIRGC------QVNQDYFASVN---APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHHHHHHHHHHTTC------HHHHHHHHHCE---ESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCC------HHHHHHHhhcc---CCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 55555555555433221 11222211110 0011112234444555566677788999999999888766543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.18 E-value=0.87 Score=56.31 Aligned_cols=272 Identities=10% Similarity=0.021 Sum_probs=156.6
Q ss_pred HHHHHhcCCChhhhhH----HHHHHHHhhcC---CCChHHHhhHHHHHHHHHhhccccc--------ccccHHHHHHHhh
Q psy2915 565 LAVRTMGCIRVDKITE----YLCEPLRKCLK---DEDPYVRKTAAVCVAKLYDINAQLV--------EDQGFLDQLKDLL 629 (883)
Q Consensus 565 ~AL~~L~~i~~~~~~~----~l~~~l~~~l~---d~~~~VRk~A~~al~~l~~~~~~~~--------~~~~~~~~l~~lL 629 (883)
..+++++.++.....+ .+.+.+.+.+. +.+|..+.+|+.+++.+...-+... .-+.+++.+..++
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 3445566667666666 66666666663 5679999999999998877433210 1135777788887
Q ss_pred c-----CCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHH--HcccCChhhHHHHHHHHhccC----CCChHHH
Q psy2915 630 S-----DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLT--ALNECTEWGQVFILDSLSNYS----PKDDREA 698 (883)
Q Consensus 630 ~-----D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~--~l~~~~~w~qi~iL~lL~~~~----~~~~~~~ 698 (883)
+ ++.|.|+..++.+++.....-.... ...++.+..++. .+.+.++=.+...-.+|.+++ +.=....
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~ 576 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYES---AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYT 576 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 6 8899999999999999875432111 345666667776 555566667777666666653 2212234
Q ss_pred HHHHHHHhHhhcCC------------------------ChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHH---
Q psy2915 699 QSICERITPRLAHA------------------------NAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVT--- 751 (883)
Q Consensus 699 ~~il~~l~~~l~~~------------------------~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~--- 751 (883)
..+++.+..++... +.-.+|||+.+++... +.+++-....++.+.+++..
T Consensus 577 ~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~---~~~~e~~~~~l~~ll~pl~~~l~ 653 (980)
T 3ibv_A 577 ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG---NLTPEEQALYCDSLINALIGKAN 653 (980)
T ss_dssp HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 56777777666521 1256999999998763 22233344556666666553
Q ss_pred -hccC--Cc-chHHH---HHHHHHHHHhhCch-------h---Hhhcccee-EE--ccCCCHHHHHHHHHHHHHhccccc
Q psy2915 752 -LLSS--EP-EVQYV---ALRNINLIVQKRPD-------I---LKHEMKVF-FV--KYNDPIYVKLEKLDIMIRLASQAN 811 (883)
Q Consensus 752 -ll~~--~~-niry~---aL~~l~~l~~~~~~-------~---~~~~~~~~-~~--l~~dd~~Ir~~~l~lL~~l~~~~N 811 (883)
++.. .. +-+.- .+..+..++.-.++ . +.+-.+.+ .+ ....+..||-++-..+-+|+.--+
T Consensus 654 ~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg 733 (980)
T 3ibv_A 654 AALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG 733 (980)
T ss_dssp HHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred HHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 3321 11 21221 12333444433221 1 12212222 11 224567888888888888777555
Q ss_pred hhh-------hh--------HHHHHHHHHHHHHHhhCCCchHHHHH
Q psy2915 812 IAQ-------VN--------YVVQEAIVVIKDIFRKYPNKYETIIS 842 (883)
Q Consensus 812 ~~~-------~~--------~~~~e~i~~i~~l~~~~p~~~~~~i~ 842 (883)
... .. .-..+.+..+..++.+|.+....++.
T Consensus 734 ~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~ 779 (980)
T 3ibv_A 734 PDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMMEITN 779 (980)
T ss_dssp HHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred HhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 11 11233555667777777665444433
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.16 E-value=0.099 Score=63.68 Aligned_cols=290 Identities=18% Similarity=0.207 Sum_probs=170.8
Q ss_pred hcCCCChhHHHHHHHHHHHHhhhC--ccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCccccccccccCCCC
Q psy2915 159 CLKDEDPYVRKTAAVCVAKLYDIN--AQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICW 236 (883)
Q Consensus 159 ~l~d~~~~VRk~A~~al~kl~~~~--p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~~~l~~~~~~~~w 236 (883)
.+.-+++.=|+.|+.++..++... ...++ .++.+.+.+.+.|.... -+|+.++..++...+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~----------- 87 (986)
T 2iw3_A 22 KLSVATADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP----------- 87 (986)
T ss_dssp HHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT-----------
T ss_pred hccccchhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC-----------
Confidence 344444556788888888877633 12222 45778889988887666 888888888886542211
Q ss_pred cHHHHHhhccccccCCCCCCCchHHHHHHHHHHhhcCCCChhhHHHHHHHHhHHHHHhh-cCChhHHHHHHHHHHHHHhh
Q psy2915 237 NLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL-SSEPEVQYVALRNINLIVQK 315 (883)
Q Consensus 237 ~q~~~l~l~~~~~~~~l~~~n~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~vr~~aL~~l~~l~~~ 315 (883)
.++ + ++-.+.+.+.... ++.+.||-+|-.++
T Consensus 88 ----------------------~~e-------------------~-~~~~~~~~~~~~~~dk~~~v~~aa~~~~------ 119 (986)
T 2iw3_A 88 ----------------------SVE-------------------P-YIVQLVPAICTNAGNKDKEIQSVASETL------ 119 (986)
T ss_dssp ----------------------TTH-------------------H-HHHTTHHHHHHHTTCSSHHHHHHHHHHH------
T ss_pred ----------------------Ccc-------------------c-chHHHHHHHHHHhcCCchHHHHHHHHHH------
Confidence 110 0 1112334444443 34556766665544
Q ss_pred CchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhhhhc-CHHHHHHHHHHHHHHHhhchhhHHHH
Q psy2915 316 RPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAERC 394 (883)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~~~~-d~~~r~~ai~aI~~la~k~~~~~~~~ 394 (883)
+.+....++..+..+++.|.+|+... -+..+..+...++.++..-|.....+
T Consensus 120 ---------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 120 ---------------------------ISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp ---------------------------HHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ---------------------------HHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 34445566667788899999998655 48888889999988886544322111
Q ss_pred HHHHHHHHHhHhhhhhCCHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhh
Q psy2915 395 VSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRG 474 (883)
Q Consensus 395 v~~Ll~lL~~~~~~~i~~~~~il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA 474 (883)
.++++..+.+.+.|..++|+.++..++.|+...- .|.
T Consensus 173 ------------------~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-------------------~n~------ 209 (986)
T 2iw3_A 173 ------------------MPELIPVLSETMWDTKKEVKAAATAAMTKATETV-------------------DNK------ 209 (986)
T ss_dssp ------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC-------------------CCT------
T ss_pred ------------------ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC-------------------CCc------
Confidence 2345555556666666777666655555553221 122
Q ss_pred HHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcccchhHHHHHHHHHHhhccC-CchhhHhHHHHHHh
Q psy2915 475 FIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKS-HPDMAIMAVNTFVK 553 (883)
Q Consensus 475 ~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~-~~~~~~l~~n~l~k 553 (883)
|+.+..+.+++.++.++..-+.+--+...+|-.+ ....+.++++.|.+
T Consensus 210 -------------------------------d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r 258 (986)
T 2iw3_A 210 -------------------------------DIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSR 258 (986)
T ss_dssp -------------------------------TTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHH
T ss_pred -------------------------------chhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHh
Confidence 3334444455555544433333333333333222 33334667899999
Q ss_pred hcCCCCHHH-HHHHH--HHhcCC-Chhh----hhHHHHHHHHhhcC-CCChHHHhhHHHHHHHHHhh
Q psy2915 554 DCEDSNPLI-RALAV--RTMGCI-RVDK----ITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLYDI 611 (883)
Q Consensus 554 dl~~~n~~v-r~~AL--~~L~~i-~~~~----~~~~l~~~l~~~l~-d~~~~VRk~A~~al~~l~~~ 611 (883)
.|+...-.+ |..|. ..|+++ .+|. +.+.++|.+++... -.+|.+|..|-.|+..+.+.
T Consensus 259 ~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 259 GLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 998766444 44443 366776 3444 44446677777664 57999998888888777664
No 99
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.11 E-value=0.024 Score=69.03 Aligned_cols=219 Identities=14% Similarity=0.173 Sum_probs=161.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhc---CCChhhhhHHHHHHHHhhcCCC-ChHHHhhHHHHHHHHHhhcccccc--ccc
Q psy2915 547 AVNTFVKDCEDSNPLIRALAVRTMG---CIRVDKITEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLYDINAQLVE--DQG 620 (883)
Q Consensus 547 ~~n~l~kdl~~~n~~vr~~AL~~L~---~i~~~~~~~~l~~~l~~~l~d~-~~~VRk~A~~al~~l~~~~~~~~~--~~~ 620 (883)
..+.+...+.|....||.+|-.++. ....|+-...++|.+...+.+. .|-.+-.|+.++.++....|+.+. -++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 4577777788988999987665544 4466777788999999999755 699999999999999987776653 246
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC---CCChHH
Q psy2915 621 FLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS---PKDDRE 697 (883)
Q Consensus 621 ~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~~~~~~ 697 (883)
.+|.+.+.+.|..+.|..+|..++..+|.-- ++.+...++| .|++.+.++++ .-+.++.|..-+ ..+...
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~-~n~d~~~~~~----~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETV-DNKDIERFIP----SLIQCIADPTE--VPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC-CCTTTGGGHH----HHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcC-CCcchhhhHH----HHHHHhcChhh--hHHHHHHhhcCeeEeeecchh
Confidence 7888999999999999999999999999753 3344544555 56666655655 445677776643 223333
Q ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc--CCcchHHHHHHHHHHHHhh
Q psy2915 698 AQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS--SEPEVQYVALRNINLIVQK 773 (883)
Q Consensus 698 ~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~--~~~niry~aL~~l~~l~~~ 773 (883)
..-+.+.|..-|+....++...++-++-+++..+.. |......+.++.|-+..... ++||+|=++-+.+..|...
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~-~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED-PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC-HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC-HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 445567777788889999999999999999866655 33344556667776666555 6999999998887777554
No 100
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.92 E-value=0.069 Score=54.73 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=99.3
Q ss_pred HHHHHHHHhcC---CChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHH
Q psy2915 562 IRALAVRTMGC---IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVA 638 (883)
Q Consensus 562 vr~~AL~~L~~---i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~ 638 (883)
.+...|+..-. -.+|++.+.+++.+.....|++..|||-.+.=+...++..++.. ...++.|..+++|+|+.|..
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~--~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL--PHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCHHHHH
Confidence 55555554443 35788999999999998889999999999999999999888887 46788999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccC-----ChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCC
Q psy2915 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC-----TEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHAN 713 (883)
Q Consensus 639 ~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~-----~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~ 713 (883)
.++.+...+-+ ..++.+++. +.. .-|....-++ +.+....++.|
T Consensus 109 ~~I~~~~~iY~-------------~~l~~i~~~-~~~~~~~~~~W~~m~~lK-----------------~~Il~~~~s~n 157 (257)
T 3gs3_A 109 RVIQACGSIYK-------------NGLQYLCSL-MEPGDSAEQAWNILSLIK-----------------AQILDMIDNEN 157 (257)
T ss_dssp HHHHHHHHHHH-------------HHHHHHTTS-SSCCHHHHHHHHHHHHHH-----------------HHHHHGGGSSC
T ss_pred HHHHHHHHHHH-------------HHHHHHhcC-CCCcchHHHHHHHHHHHH-----------------HHHHHHHccCC
Confidence 99987777753 444444431 111 3455544444 45555677788
Q ss_pred hHHHHHHHHHHHHhh
Q psy2915 714 AAVVLSAVKVLMKLM 728 (883)
Q Consensus 714 ~aV~~eai~~i~~~~ 728 (883)
.+|+..|++.+-.+.
T Consensus 158 ~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 158 DGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH
Confidence 899999998877653
No 101
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.70 E-value=0.044 Score=68.43 Aligned_cols=122 Identities=10% Similarity=0.068 Sum_probs=85.6
Q ss_pred chhHHHHHHHHHHhhcc----C----CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhh---c
Q psy2915 522 NLELKKLVYLYLMNYAK----S----HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKC---L 590 (883)
Q Consensus 522 ~~~~kr~~yl~~~~~~~----~----~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~---l 590 (883)
+..++..++++++.+.+ . .++...-+.+.+.+.+...+...+..+|++|||++.++..+.+.+.+... -
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~ 487 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSL 487 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccc
Confidence 34556666666655521 1 23444556677777777888999999999999999998766554443211 1
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhh--cCCChhHHHHHHHHHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLL--SDSNPMVVANAVAALSEMN 648 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL--~D~d~~V~~~a~~~l~~i~ 648 (883)
.+....||.+|+.||.++....|+.+. +.+.++. .+.+++||.+|+..|.+..
T Consensus 488 ~~~~~rvr~aAi~ALr~~~~~~p~~v~-----~il~~i~~n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 488 DEYSTRVQAEAIMALRNIAKRDPRKVQ-----EIVLPIFLNVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp CCSCHHHHHHHHHTTTTGGGTCHHHHH-----HHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHHHHhhhhchHHHH-----HHHHHHhcCCCCChHHHHHHHHHHHHHC
Confidence 123467999999999988877776653 5666666 3689999999999887665
No 102
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.68 E-value=0.031 Score=56.66 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=85.8
Q ss_pred HHHHHhhcCCCCh--HHHhhHHHHHHHHHhhccc---ccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhh
Q psy2915 583 CEPLRKCLKDEDP--YVRKTAAVCVAKLYDINAQ---LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVAL 657 (883)
Q Consensus 583 ~~~l~~~l~d~~~--~VRk~A~~al~~l~~~~~~---~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~ 657 (883)
+|.+.+.|.++++ .++..|+.++..+...+++ .+.....++.|.++|..+++.++..|+.+|..+...+++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n--- 86 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN--- 86 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH---
Confidence 4567778887777 8888888888887765432 3334567899999999999999999999999998642211
Q ss_pred HHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhc-CCChHHHHHHHHHHHHhhhhCCCChh
Q psy2915 658 IEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLA-HANAAVVLSAVKVLMKLMEMLPGEGD 736 (883)
Q Consensus 658 ~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~-~~~~aV~~eai~~i~~~~~~~~~~~~ 736 (883)
+..+.+ ...++.+..+++ +.+..+.-+|+.++.+++. .++
T Consensus 87 ----------------------k~~I~~-------------~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~----~~~ 127 (233)
T 3tt9_A 87 ----------------------KLEVAE-------------LNGVPRLLQVLKQTRDLETKKQITGLLWNLSS----NDK 127 (233)
T ss_dssp ----------------------HHHHHH-------------TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT----SGG
T ss_pred ----------------------HHHHHH-------------cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc----Chh
Confidence 111111 144777777776 4567888888888888852 222
Q ss_pred hHHHHHHHhhhHHHHh
Q psy2915 737 FVSTLTKKLAPPLVTL 752 (883)
Q Consensus 737 l~~~~~~~~~~~L~~l 752 (883)
..........++|+.+
T Consensus 128 ~k~~i~~~~i~~Lv~l 143 (233)
T 3tt9_A 128 LKNLMITEALLTLTEN 143 (233)
T ss_dssp GHHHHHHHHHHHHCCC
T ss_pred hHHHHHhccHHHHHHH
Confidence 3334444445555543
No 103
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.64 E-value=0.032 Score=56.55 Aligned_cols=105 Identities=12% Similarity=0.014 Sum_probs=78.2
Q ss_pred hHHHHHHhhcCCCCH--HHHHHHHHHhcCCC--hhhhhH-----HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc---
Q psy2915 546 MAVNTFVKDCEDSNP--LIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA--- 613 (883)
Q Consensus 546 l~~n~l~kdl~~~n~--~vr~~AL~~L~~i~--~~~~~~-----~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~--- 613 (883)
+.++.+.+.|+++++ .++..|..++.++. +++... ..+|.+.++|.++++.|++.|+.++..+...++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 345666777777776 77776766666542 222221 256889999999999999999999999976433
Q ss_pred cccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhc
Q psy2915 614 QLVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 614 ~~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~ 650 (883)
..+.+..-++.|.++|. .+++.++..|+.+|..+...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 33444568899999998 57999999999999999854
No 104
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.61 E-value=0.15 Score=52.21 Aligned_cols=212 Identities=13% Similarity=0.115 Sum_probs=109.8
Q ss_pred ChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCC--cccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhh
Q psy2915 467 NPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKD--VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMA 544 (883)
Q Consensus 467 ~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~--~~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~ 544 (883)
...-|+|+++..+-...... +...+.++++-.....+.. ...++..++.+..+++..+||.+.-++...+..+++
T Consensus 10 ~~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-- 86 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-- 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred cccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH--
Confidence 45566666666665554333 3445666666665544432 123333444544456666677666666555544444
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhh-------ccc---
Q psy2915 545 IMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI-------NAQ--- 614 (883)
Q Consensus 545 ~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~-------~~~--- 614 (883)
++..+++.+..+++|+++.|-|+|+.|...+|+. .|.
T Consensus 87 ---------------------------------l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~ 133 (257)
T 3gs3_A 87 ---------------------------------LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGD 133 (257)
T ss_dssp ---------------------------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 4455555555555666666666666666666552 111
Q ss_pred ----ccc-cccHHHHHHHhhcCCChhHHHHHHHHHHHHHh--cCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHH
Q psy2915 615 ----LVE-DQGFLDQLKDLLSDSNPMVVANAVAALSEMNE--ASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSL 687 (883)
Q Consensus 615 ----~~~-~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~--~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL 687 (883)
.+. -..+...+.++.+..+.+|+.+++..+..+.. ..++..... -+. .-=+..++...|.....-|
T Consensus 134 ~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~--~~~--d~SL~~Vp~~Hp~l~~~~L--- 206 (257)
T 3gs3_A 134 SAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK--RDG--DFSLADVPDHCTLFRREKL--- 206 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC--CTT--CCCGGGSCSSCCSSCHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC--CCC--CCCHHHCCCCCCcCCHHHH---
Confidence 000 01133445556778899999999999988762 111110000 000 0000011111222222222
Q ss_pred hccCCCChHHHHHHHHHHhHhhcCC--ChHHHHHHHHHHHHhh
Q psy2915 688 SNYSPKDDREAQSICERITPRLAHA--NAAVVLSAVKVLMKLM 728 (883)
Q Consensus 688 ~~~~~~~~~~~~~il~~l~~~l~~~--~~aV~~eai~~i~~~~ 728 (883)
..|+..+++.+...+.+. ++..+..+++++..++
T Consensus 207 -------e~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Ia 242 (257)
T 3gs3_A 207 -------QEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIA 242 (257)
T ss_dssp -------HHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHH
Confidence 256678888888776654 4456667777777664
No 105
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.59 E-value=0.0063 Score=67.47 Aligned_cols=209 Identities=17% Similarity=0.185 Sum_probs=131.0
Q ss_pred chhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCC--hhhhhHHHHHHHHhhcCCCChHHHh
Q psy2915 522 NLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRK 599 (883)
Q Consensus 522 ~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~--~~~~~~~l~~~l~~~l~d~~~~VRk 599 (883)
|...|-++-+++-.+++--.|.. -..||-.|.++||.+. +++ .+ ++..+.+.+..+.|.||-
T Consensus 218 DLAvRLLCVLALDRFGDYVSDqV--------------VAPVRETaAQtLGaL~hLp~e-~~-IL~qLV~~l~~~~WEVRH 281 (800)
T 3oc3_A 218 KLFSKIYEILVTDKFNDFVDDRT--------------VAPVRDAAAYLLSRIYPLIGP-ND-IIEQLVGFLDSGDWQVQF 281 (800)
T ss_dssp THHHHHHHHHHHBCCBBCSSSSC--------------BCHHHHHHHHHHHHHTTTSCS-CC-HHHHHTTGGGCSCHHHHH
T ss_pred HHHHHHHHHHHhccccccccCee--------------eeehHHHHHHHHHHHHhCChh-HH-HHHHHHhhcCCCCeeehh
Confidence 67778888888888887654431 1358888888888651 122 22 222233455788999999
Q ss_pred hHHHHHHHHHhhcccccc-cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChh
Q psy2915 600 TAAVCVAKLYDINAQLVE-DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEW 678 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~-~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w 678 (883)
.+.+++-=+ .+.+. -+..++.+...|.|.|-+|+..|+.+|..+. .|+ . ++.+-..++..+..+++.+.
T Consensus 282 GGLLGLKYL----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~--~-l~~LL~iLWd~L~~LDDLSA- 351 (800)
T 3oc3_A 282 SGLIALGYL----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITD--S-LDLVLEKCWKNIESEELISV- 351 (800)
T ss_dssp HHHHHHHHT----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSS--T-HHHHHHHHHHHHHTCCSCCT-
T ss_pred hhHHHHHHH----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chh--h-HHHHHHHHHHHhhhhcccch-
Confidence 999998644 22221 1356777888889999999999999999998 232 2 22222344444444444322
Q ss_pred hHHHHHHHHhcc---CCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccC
Q psy2915 679 GQVFILDSLSNY---SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS 755 (883)
Q Consensus 679 ~qi~iL~lL~~~---~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 755 (883)
..-.++.+|+.+ .+. ......+++.+.+.+.|+-++|+.++.+++..+. . ..++..+..- -++..
T Consensus 352 STgSVMdLLAkL~s~p~~-a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-----~----~~~LRLIFQN--ILLE~ 419 (800)
T 3oc3_A 352 SKTSNLSLLTKIYRENPE-LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-----E----ESIDFLVAEV--VLIEE 419 (800)
T ss_dssp THHHHHHHHHHHHHHCTT-CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-----C----HHHHHHHHHH--HHHCS
T ss_pred hhHHHHHHHHHHHcCCcc-cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-----h----hhHHHHHHHH--HHhCC
Confidence 233466666664 221 1011177899999999999999999999997773 2 2222222220 13457
Q ss_pred CcchHHHHHHHHH
Q psy2915 756 EPEVQYVALRNIN 768 (883)
Q Consensus 756 ~~niry~aL~~l~ 768 (883)
+++++=.+++.-.
T Consensus 420 neeIl~lS~~VWk 432 (800)
T 3oc3_A 420 KDEIREMAIKLLK 432 (800)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 7788777766653
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.48 E-value=0.022 Score=58.65 Aligned_cols=176 Identities=9% Similarity=0.000 Sum_probs=112.0
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhCCCCc-----ccchHHHHhhccCCChhHHHHHHHHHHHhh----ccCCcchhhhccc
Q psy2915 20 GELNSDKKEKKREAVKKVIASMTVGKDV-----SALFPDVVNCMQTDNLELKKLVYLYLMNYA----KSHPDMAIMAFST 90 (883)
Q Consensus 20 ~~l~~~~~~~~~~~l~kli~~~~~G~~~-----~~~~~~v~~~~~~~~~~~k~~~y~~~~~~~----~~~~~~~~~~~n~ 90 (883)
..+-+++-+.+.+++..+.-......+- +-+|.-+.--+-++|+.+-.-+.-++..+. ..+..+.--
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~---- 128 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE---- 128 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH----
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH----
Confidence 3344557777888888887765543211 111222222223667776666655555542 222211100
Q ss_pred ccccccCccchhhhccccccccccccchhhhchhcCCCCHHHHHHHHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHH
Q psy2915 91 FFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKT 170 (883)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~kDL~~~n~~vr~lALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~ 170 (883)
..-.=+|.+..-+.|+.+.+|..+-..+-.+..---...+.+.+..++.+.|+.+|-.
T Consensus 129 ----------------------ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 129 ----------------------EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp ----------------------HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHH
Confidence 0111233488889999999998775555443221222335667778999999999999
Q ss_pred HHHHHHHHhhhCccccccccHH---HHHHHHhcCCChhHHHHHHHHHHhccccCCc
Q psy2915 171 AAVCVAKLYDINAQLVEDQGFL---DQLKDLLSDSNPMVVANAVAAILLLPRKSYW 223 (883)
Q Consensus 171 A~~al~kl~~~~p~~~~~~~~~---~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~ 223 (883)
.+..+..++..+.-. + ...+ +.+-++++|+|..||.+|+.++.++....+.
T Consensus 187 ~l~~l~~li~~~G~~-~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 187 CLLVIEYYITNAGIS-P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HHHHHHHHHHHHCSG-G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCC-c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 999999998865433 2 3467 8899999999999999999999999766543
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.32 E-value=0.014 Score=58.38 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=90.0
Q ss_pred HHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHh-hcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCC
Q psy2915 515 VNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVK-DCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 593 (883)
Q Consensus 515 i~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~k-dl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~ 593 (883)
-.+.+++..++|-.+...++.. ...+ -+.+.++. --.|++--||-.+..+++.+....-.+.+++.+.+...|+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~~----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~ 151 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKDK----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSS 151 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTSH----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCS
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCcH----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 3455666667776655555555 3222 24456665 5568899999888888876543111112456778889999
Q ss_pred ChHHHhhHHHHHHHHHhhccccccc-ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 594 DPYVRKTAAVCVAKLYDINAQLVED-QGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 594 ~~~VRk~A~~al~~l~~~~~~~~~~-~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
++.||+.|+.+..-..+. |....+ ....+.+..+..|++.-|+.+....|.++.+.+|
T Consensus 152 n~~VRR~Ase~~rpW~~~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 152 NLHTRRAATEGLRIWTNR-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp SHHHHHHHHHHTCSGGGS-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHhhHHHhcc-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 999999999997542222 222222 2366888888899999999999999999998765
No 108
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.25 E-value=0.31 Score=52.74 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=139.1
Q ss_pred HHHHHHHHhccC---CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHH
Q psy2915 132 IRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVA 208 (883)
Q Consensus 132 vr~lALr~L~~i---~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~ 208 (883)
.+...|+.+-.+ ..|++.+.+++.+.....|++..|||-.+.=+...+..+++.. ...++.|..+|+|+|+.|..
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCHHHHH
Confidence 566666666554 6799999999999999999999999999999999999999988 45788999999999999999
Q ss_pred HHHHHHHhccccCCccccccccccCCCCcHHHHHhhccccccCCCCCCCch--H-HHHHHHHHHhhcCCCChhhHHHHHH
Q psy2915 209 NAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPH--T-PLLKVLMKLMEMLPGEGDFVSTLTK 285 (883)
Q Consensus 209 ~a~~~L~ei~~~~~~~~~l~~~~~~~~w~q~~~l~l~~~~~~~~l~~~n~~--v-~~~~~l~~l~~~~~~~~~~~~~~~~ 285 (883)
.++.+...+.+. .+.++. .+.+.. + .+.. .+.
T Consensus 119 ~~I~~~tslYpl---~f~~i~------------------------~~~~~~~~~e~~W~------------------~m~ 153 (386)
T 3o2t_A 119 KAILTMTQLYKV---ALQWMV------------------------KSRVISELQEACWD------------------MVS 153 (386)
T ss_dssp HHHHHHHHHHHH---HHHHHH------------------------HC-CCCHHHHHHHH------------------HHH
T ss_pred HHHHHHHHHHHH---HHHHHh------------------------cCCCcchhHHHHHH------------------HHH
Confidence 999887766421 110000 011100 0 1111 233
Q ss_pred HHhHHHHHhhcC-ChhHHHHHHHHHHHHHhhCc-hhHH-------hcccceeeccCCCHHHHHHHHHHHHHhcChhhHHH
Q psy2915 286 KLAPPLVTLLSS-EPEVQYVALRNINLIVQKRP-DILK-------HEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 356 (883)
Q Consensus 286 ~~~~~L~~lL~~-~~~vr~~aL~~l~~l~~~~~-~~~~-------~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~ 356 (883)
.+...+..+..+ +..+|..++.-+..++.... ..-. ..-..+.....+-+.++...|+. -...
T Consensus 154 ~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~--------EA~~ 225 (386)
T 3o2t_A 154 AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWE--------EGKA 225 (386)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHH--------HHHH
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHH--------HHHH
Confidence 445555565654 55899999988887765331 1100 00001111112223344444432 1234
Q ss_pred HHHHHHHhhhh--cCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q psy2915 357 VLSELKEYATE--VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 402 (883)
Q Consensus 357 Il~eL~~~~~~--~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL 402 (883)
+++.|.+++.+ .++-....++.+++.++.+=|.....+++.+..+-
T Consensus 226 lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 226 ALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLH 273 (386)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhc
Confidence 66677777653 34445567899999999999999899998887654
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.09 E-value=0.11 Score=57.79 Aligned_cols=217 Identities=10% Similarity=0.066 Sum_probs=130.9
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcCCCChhhhhhhHHHHHhhcC--------Cchh
Q psy2915 416 LLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLST--------GNTF 487 (883)
Q Consensus 416 il~~l~~~~~~~~~~vr~~~L~al~Kl~~~~~~~~~~~l~~ll~~~~~d~~~~evrdrA~~y~~ll~~--------~~~~ 487 (883)
+.+.+...+.+..|++|-.+..++-.+...-+.... ..+..|. |-|......+.. +.-.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG----------R~~~~N~---DLAvRLLCVLALDRFGDYVSDqVV 241 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD----------IQIRVDS---KLFSKIYEILVTDKFNDFVDDRTV 241 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC--------------CCCCCCT---THHHHHHHHHHHBCCBBCSSSSCB
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc----------eeccccH---HHHHHHHHHHHhccccccccCeee
Confidence 455566677899999998876665544332111000 0011122 223222222221 1234
Q ss_pred hhhhhhhHHHHHhhccCCCc-ccchHHHHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHH
Q psy2915 488 YILLHLTRLVIASMTVGKDV-SALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALA 566 (883)
Q Consensus 488 ~~~~~~l~kli~~~~~g~~~-~~~~~~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~A 566 (883)
+.+||...+.+..+ .--+. -....++++.+..+.|.+|--|-+.+..+.+.-.+ .--+++.+...|+|+++.||+.|
T Consensus 242 APVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHH
Confidence 45566655555554 21111 22233334445777899998888888766332222 46678999999999999999999
Q ss_pred HHHhcCCChhhhhHHHHHHHHhhcC---CCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHH
Q psy2915 567 VRTMGCIRVDKITEYLCEPLRKCLK---DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 643 (883)
Q Consensus 567 L~~L~~i~~~~~~~~l~~~l~~~l~---d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~ 643 (883)
+.+|..+..++..+.++..+=.+|. |=++.. .....-+.+++...+....++..+|.|...+.-.=++||.+++.+
T Consensus 320 AetLiPIA~p~~l~~LL~iLWd~L~~LDDLSAST-gSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 320 AELLCHFPITDSLDLVLEKCWKNIESEELISVSK-TSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp HHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTH-HHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred HHHhhhhcchhhHHHHHHHHHHHhhhhcccchhh-HHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 9999998776666666665555554 333322 233444555666555545556778888888888899999999888
Q ss_pred HHHHH
Q psy2915 644 LSEMN 648 (883)
Q Consensus 644 l~~i~ 648 (883)
+..+.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 87665
No 110
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.08 E-value=0.081 Score=57.33 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=100.2
Q ss_pred HHHHHHHHhcCC---ChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHH
Q psy2915 562 IRALAVRTMGCI---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVA 638 (883)
Q Consensus 562 vr~~AL~~L~~i---~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~ 638 (883)
.+...|+.+-.+ .+|++.+.+++.|.....|++..|||-.+.-+...+...++.. ...++.|..+|.|+|+.|..
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCHHHHH
Confidence 344444444432 5677888899999999999999999999999999999888887 46788999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHccc----CChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCCh
Q psy2915 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE----CTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANA 714 (883)
Q Consensus 639 ~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~----~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~ 714 (883)
.++.+...+-+ ..++.+++.=.. ..-|.....++ +.+...+.+.|.
T Consensus 119 ~~I~~~tslYp-------------l~f~~i~~~~~~~~~~e~~W~~m~~lK-----------------~~Il~~~ds~n~ 168 (386)
T 3o2t_A 119 KAILTMTQLYK-------------VALQWMVKSRVISELQEACWDMVSAMA-----------------GDIILLLDSDND 168 (386)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHHC-CCCHHHHHHHHHHHHHH-----------------HHHHHGGGCSSH
T ss_pred HHHHHHHHHHH-------------HHHHHHhcCCCcchhHHHHHHHHHHHH-----------------HHHHHHhccCCc
Confidence 99988777752 455555542111 13466665555 445556778899
Q ss_pred HHHHHHHHHHHHhh
Q psy2915 715 AVVLSAVKVLMKLM 728 (883)
Q Consensus 715 aV~~eai~~i~~~~ 728 (883)
+|+..|++++-.+.
T Consensus 169 GVrl~aiKFle~VI 182 (386)
T 3o2t_A 169 GIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 99999999877653
No 111
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.64 E-value=5.4 Score=50.53 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc---------CCcchHHHHHHHHHHHHhhCchhHhhc
Q psy2915 711 HANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS---------SEPEVQYVALRNINLIVQKRPDILKHE 781 (883)
Q Consensus 711 ~~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~---------~~~niry~aL~~l~~l~~~~~~~~~~~ 781 (883)
..++.+++.++.++..+..++...|++++.+++.+...+..-.. ...++|..+...+..++...|+.+.+|
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~ 622 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPN 622 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35778888899998888877776677878777766653332100 123699999999999999998887776
Q ss_pred cc
Q psy2915 782 MK 783 (883)
Q Consensus 782 ~~ 783 (883)
++
T Consensus 623 ~~ 624 (1204)
T 3a6p_A 623 FD 624 (1204)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 112
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.29 E-value=8.4 Score=47.67 Aligned_cols=325 Identities=12% Similarity=0.111 Sum_probs=176.7
Q ss_pred CChhhhhhhHHHHHhhcCCchhhhhhhhhHHHHHhhccCCCcccchHHHHHhhcc-----cchhHHHHHHHHHHhh---c
Q psy2915 466 DNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQT-----DNLELKKLVYLYLMNY---A 537 (883)
Q Consensus 466 ~~~evrdrA~~y~~ll~~~~~~~~~~~~l~kli~~~~~g~~~~~~~~~vi~ll~s-----~~~~~kr~~yl~~~~~---~ 537 (883)
.++..++.+.+..+.+..+.........+..+ +..++.++.. ++..+|......++.| .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~v-------------i~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTV-------------IKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHH-------------HHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHH-------------HHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH
Confidence 57999999988888776554322111222222 2233344432 2233444444555555 3
Q ss_pred cCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCCChh--------------hhhHHHHHHHHhhcCCCChHHHhhHHH
Q psy2915 538 KSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVD--------------KITEYLCEPLRKCLKDEDPYVRKTAAV 603 (883)
Q Consensus 538 ~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~--------------~~~~~l~~~l~~~l~d~~~~VRk~A~~ 603 (883)
..+++...-+++.+.+-+.+++|.+..+|..++.++... ...+.++..+.+...+-.+.-+..+..
T Consensus 532 ~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lye 611 (1023)
T 4hat_C 532 KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYK 611 (1023)
T ss_dssp HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 346777788899999999999999988888888766331 134555566666667778888899999
Q ss_pred HHHHHHhhcccccccccHHH--------HHHHhhc----CC----Ch---hHHHHHHHHHHHHHhcCCCchhhHHhcHHH
Q psy2915 604 CVAKLYDINAQLVEDQGFLD--------QLKDLLS----DS----NP---MVVANAVAALSEMNEASTSGVALIEMNAQT 664 (883)
Q Consensus 604 al~~l~~~~~~~~~~~~~~~--------~l~~lL~----D~----d~---~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~ 664 (883)
|++.+....|.......+++ .+.++.. |. |+ ....+.+..+..++... ...+.+.....
T Consensus 612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~l--g~~f~~~~~~i 689 (1023)
T 4hat_C 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSM--GADFYPQLGHI 689 (1023)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHH--GGGGHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHh--cHHHHHHHHHH
Confidence 99999988774432122222 2222221 21 11 12233333333343321 12233333333
Q ss_pred HHHHHHHccc-----------------CCh---hhHHH---HHHHHhccC--CCChHH-HHHHHHHHhHh-h----cC--
Q psy2915 665 INKLLTALNE-----------------CTE---WGQVF---ILDSLSNYS--PKDDRE-AQSICERITPR-L----AH-- 711 (883)
Q Consensus 665 ~~~L~~~l~~-----------------~~~---w~qi~---iL~lL~~~~--~~~~~~-~~~il~~l~~~-l----~~-- 711 (883)
+..+++.... ..| +.++. +|+++.+|. ..+.+. ...+++++... + ++
T Consensus 690 ~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~ 769 (1023)
T 4hat_C 690 YYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVP 769 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCCh
Confidence 3333332110 011 22221 677777764 222222 23444444322 1 22
Q ss_pred --CChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhcc----CCcchHHHHHHHHHHHHhhCchhHhh----c
Q psy2915 712 --ANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS----SEPEVQYVALRNINLIVQKRPDILKH----E 781 (883)
Q Consensus 712 --~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~----~~~niry~aL~~l~~l~~~~~~~~~~----~ 781 (883)
..+.|++=...++-++.+.. ....+..++.+..+-..++. ..|+.|---.+.+..+.+..+..+-. .
T Consensus 770 ~~r~~~vL~l~s~iv~~~~~~~---~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~ 846 (1023)
T 4hat_C 770 DARDAEVLNCMTTVVEKVGHMI---PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA 846 (1023)
T ss_dssp GGCCHHHHHHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHH
T ss_pred hhccHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHH
Confidence 33555555555555553222 12245555655555555664 47888888888888888877654321 2
Q ss_pred ----cc-eeEEccCCCHHHHHHHHHHHHHhcc
Q psy2915 782 ----MK-VFFVKYNDPIYVKLEKLDIMIRLAS 808 (883)
Q Consensus 782 ----~~-~~~~l~~dd~~Ir~~~l~lL~~l~~ 808 (883)
++ ++....++.+.|-...++++..+.+
T Consensus 847 ~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~ 878 (1023)
T 4hat_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1023)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 22 2234677889999999998887764
No 113
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.03 E-value=2.5 Score=51.92 Aligned_cols=303 Identities=11% Similarity=0.064 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHH-hhCch----hHHhcccceeeccCCCHHHHHHHHHHHHHhcCh----------hhHHHHHHHHHHhh
Q psy2915 301 VQYVALRNINLIV-QKRPD----ILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQ----------ANIAQVLSELKEYA 365 (883)
Q Consensus 301 vr~~aL~~l~~l~-~~~~~----~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~----------~nv~~Il~eL~~~~ 365 (883)
-++.-+..+-++. ..+++ .+.+|+.. ...+++.+-.+.|.|++..+... +=.+.+.+-|...+
T Consensus 485 ~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~--L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l 562 (997)
T 1vsy_5 485 GNVSFFSLVILLISSGFCELNMSDLFELCES--YYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCL 562 (997)
T ss_dssp HHHHHHHHHHHHHTTTTCCCCGGGHHHHHHH--TCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544 33343 33444444 34567899999999999998742 11234555555555
Q ss_pred h-hcCHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHH----H----------------HHhHhhh---hhCCHHHHHHHH
Q psy2915 366 T-EVDVDFVRKAVRAIGRCAI-KVEQSAERCVSTLLD----L----------------IQTKYAE---RIDNADELLESF 420 (883)
Q Consensus 366 ~-~~d~~~r~~ai~aI~~la~-k~~~~~~~~v~~Ll~----l----------------L~~~~~~---~i~~~~~il~~l 420 (883)
. ...+|....=..++.-+.. +.|-...|.++.++. + ++....+ ..++...++..+
T Consensus 563 ~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~ 642 (997)
T 1vsy_5 563 DYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDEL 642 (997)
T ss_dssp SSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHC
T ss_pred hccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 5 4555555544444444333 445555777776622 1 1110111 123345666666
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhcC--Cc--hHHHHHHHHHHHhhcC--CC-------ChhhhhhhHHHHHhhc-----
Q psy2915 421 LEGFHDENTQVQLQLLTAIVKLFLKR--PT--DTQELVQQVLSLATQD--SD-------NPDLRDRGFIYWRLLS----- 482 (883)
Q Consensus 421 ~~~~~~~~~~vr~~~L~al~Kl~~~~--~~--~~~~~l~~ll~~~~~d--~~-------~~evrdrA~~y~~ll~----- 482 (883)
. +......||.++-..++-++... |+ .. ..+++.+... .. .+++.++....+.-+.
T Consensus 643 ~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~ 716 (997)
T 1vsy_5 643 V--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDP----TTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDS 716 (997)
T ss_dssp C--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCH----HHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGT
T ss_pred H--hCCChHHHHHHHHHHHHHHHHhhcccCCCCH----HHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhc
Confidence 6 66778899998877776655443 21 12 2333333321 00 1222222211111111
Q ss_pred ---CCchh---hhhhhhhHHHH----HhhccCCC--c----cc-chHHHHHhhcccch-hHHHH-HHHHHHhhccC--Cc
Q psy2915 483 ---TGNTF---YILLHLTRLVI----ASMTVGKD--V----SA-LFPDVVNCMQTDNL-ELKKL-VYLYLMNYAKS--HP 541 (883)
Q Consensus 483 ---~~~~~---~~~~~~l~kli----~~~~~g~~--~----~~-~~~~vi~ll~s~~~-~~kr~-~yl~~~~~~~~--~~ 541 (883)
..++. .......+.++ ..+..|.. . .. +++.+..+...++- .+.+. ++..+..++.. .+
T Consensus 717 ~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~ 796 (997)
T 1vsy_5 717 VVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRK 796 (997)
T ss_dssp TSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCH
T ss_pred ccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCH
Confidence 00100 00011122222 22222211 0 11 22223333343433 45555 55555555322 45
Q ss_pred hhhHhHHHHHHhhcC-CCCHHHHHHHHHHhcC-------CChhhhhHHHHHHHHhhcCCCC-hHHHhhHHHHHHHHHhhc
Q psy2915 542 DMAIMAVNTFVKDCE-DSNPLIRALAVRTMGC-------IRVDKITEYLCEPLRKCLKDED-PYVRKTAAVCVAKLYDIN 612 (883)
Q Consensus 542 ~~~~l~~n~l~kdl~-~~n~~vr~~AL~~L~~-------i~~~~~~~~l~~~l~~~l~d~~-~~VRk~A~~al~~l~~~~ 612 (883)
+....+++.+..-.+ +++. .|..+|..+-. +-+.+-...+...|.++|.|+. ..||..|+.+|.-+.+-.
T Consensus 797 ~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 797 NHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 555667777766666 5677 88888887542 1222333567788889999999 999999999998776655
No 114
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=93.63 E-value=16 Score=44.92 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=77.6
Q ss_pred CchhhHhHHHHHHhhcCCCC-HHHHHHHHHHhcCC--Ch-h-hhhHHHHHHHHhhc-C-----------CCChHHHhhHH
Q psy2915 540 HPDMAIMAVNTFVKDCEDSN-PLIRALAVRTMGCI--RV-D-KITEYLCEPLRKCL-K-----------DEDPYVRKTAA 602 (883)
Q Consensus 540 ~~~~~~l~~n~l~kdl~~~n-~~vr~~AL~~L~~i--~~-~-~~~~~l~~~l~~~l-~-----------d~~~~VRk~A~ 602 (883)
.++....+.+.+.+.|.|++ ..||..|..+|+.+ .. + ...+.++....+.+ + +++-..|-+|+
T Consensus 837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV 916 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV 916 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence 34444567888889999999 99999999999876 22 2 33334444444443 2 11115678999
Q ss_pred HHHHHHHhhcccccccccHHHHHHHhhc----CCChhHHHHHHHHHHHHHhc
Q psy2915 603 VCVAKLYDINAQLVEDQGFLDQLKDLLS----DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 603 ~al~~l~~~~~~~~~~~~~~~~l~~lL~----D~d~~V~~~a~~~l~~i~~~ 650 (883)
++|+.+...+|-.++.|+|+|.+...|. |+.| |...+=..+.+..+.
T Consensus 917 LgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 917 LGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 9999999999999876789988776664 5333 777777788887654
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.01 E-value=11 Score=47.03 Aligned_cols=123 Identities=10% Similarity=0.080 Sum_probs=78.0
Q ss_pred HHHhhcccchhHHHHHHHHHHhhccCCchhhHhHHHHHHhhcCC-------CCHHHHHHHHHHhcCCChhhhhHHHHHHH
Q psy2915 514 VVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCED-------SNPLIRALAVRTMGCIRVDKITEYLCEPL 586 (883)
Q Consensus 514 vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l~~n~l~kdl~~-------~n~~vr~~AL~~L~~i~~~~~~~~l~~~l 586 (883)
+.+.+.+.+...+.+.-.+++..+... +++.+.+-+.. ....+|..|+.+|..+.... ...+.+.+
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~p~------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il 517 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQPN------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIV 517 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCGG------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHhhccCChh------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHH
Confidence 344555666444444555566666532 45566665532 23578899999999885421 11222334
Q ss_pred Hhhc--CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhc
Q psy2915 587 RKCL--KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 587 ~~~l--~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~ 650 (883)
.+.. .+.++.||-+|+..+. +..|... ++..+...+. |++..|.....+.+..+...
T Consensus 518 ~~i~~n~~e~~EvRiaA~~~Lm---~t~P~~~----~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 518 LPIFLNVAIKSELRIRSCIVFF---ESKPSVA----LVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHH---HTCCCHH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCChHHHHHHHHHHH---HHCcCHH----HHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 4445 4678999999999985 3345432 4455555554 79999999999999999865
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.48 E-value=27 Score=43.28 Aligned_cols=162 Identities=12% Similarity=0.064 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCChhhhhHHHHHHHHhhcCC--CChHHHhhHHHHHHHHHhhccccccc---ccHHHHHHHhhcCC---C-
Q psy2915 563 RALAVRTMGCIRVDKITEYLCEPLRKCLKD--EDPYVRKTAAVCVAKLYDINAQLVED---QGFLDQLKDLLSDS---N- 633 (883)
Q Consensus 563 r~~AL~~L~~i~~~~~~~~l~~~l~~~l~d--~~~~VRk~A~~al~~l~~~~~~~~~~---~~~~~~l~~lL~D~---d- 633 (883)
.+.++-.+++++..++...+.+.+.+.++. .+|..+-+++.|++.+...-.+..+. +..++.|.++.+.+ |
T Consensus 459 mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 459 MRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccch
Confidence 344555666667777777777888777653 57999999999999986432211111 23444444444322 2
Q ss_pred -hhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCC------------ChHHHHH
Q psy2915 634 -PMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPK------------DDREAQS 700 (883)
Q Consensus 634 -~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~------------~~~~~~~ 700 (883)
+.++.+.+-+++...+.- ..-+.+.++.+.++++.+.+.++-.|......|.+++.. ...-...
T Consensus 539 k~~vas~i~~vlgrY~~wl---~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~ 615 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFL---RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDE 615 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHH---HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHH
T ss_pred hHHHHHHHHHHHhhhHHHH---HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHH
Confidence 334443334555544221 112566778888999888888888888777777664311 1112233
Q ss_pred HHHHHhH---hhcCCChHHHHHHHHHHHHh
Q psy2915 701 ICERITP---RLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 701 il~~l~~---~l~~~~~aV~~eai~~i~~~ 727 (883)
+++.+.. .++..+.-.+|+|+.+++.-
T Consensus 616 il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 616 ILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 4443333 33344457788888777654
No 117
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.99 E-value=1.1 Score=53.08 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=45.2
Q ss_pred HHhhcCCCCHHHHHHHHHHhcCCCh-hhhhH-----HHH-HHHHhhcCCCChHHHhhHHHHHHHHHhh
Q psy2915 551 FVKDCEDSNPLIRALAVRTMGCIRV-DKITE-----YLC-EPLRKCLKDEDPYVRKTAAVCVAKLYDI 611 (883)
Q Consensus 551 l~kdl~~~n~~vr~~AL~~L~~i~~-~~~~~-----~l~-~~l~~~l~d~~~~VRk~A~~al~~l~~~ 611 (883)
+.+.|+++++..|..|+.+|+++.. ++... .++ +.|.+++.|++..||..|+.+|..+...
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3445889999999999998888743 23222 233 4567788999999999999999888764
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.82 E-value=0.88 Score=53.97 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccc---cccccHH-HHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL---VEDQGFL-DQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 582 l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~---~~~~~~~-~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
+.|.+ +.|.++++.+|..|+.|+..+.. +++. +...+.+ +.+..+|.|++..||.+|+.+|..++..
T Consensus 36 i~Pll-~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 36 ILPVL-KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp THHHH-HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44545 45899999999999999999985 3332 1112344 4567889999999999999999999864
No 119
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=87.24 E-value=8.9 Score=40.30 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=63.6
Q ss_pred HhhcCCCCHHHHHHHHHHhcC-C-ChhhhhHHHH-----HHHHhhcCCCChHHHhhHHHHHHHHHhhc---ccccccccH
Q psy2915 552 VKDCEDSNPLIRALAVRTMGC-I-RVDKITEYLC-----EPLRKCLKDEDPYVRKTAAVCVAKLYDIN---AQLVEDQGF 621 (883)
Q Consensus 552 ~kdl~~~n~~vr~~AL~~L~~-i-~~~~~~~~l~-----~~l~~~l~d~~~~VRk~A~~al~~l~~~~---~~~~~~~~~ 621 (883)
.+-|.+++...++.||..|.. + .+.++++.++ ..+.+.+.+.+...-.-+..|+..+.... ...+..+.+
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 333444555556666666665 2 2344444433 34444555666666666677776665431 122334568
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q psy2915 622 LDQLKDLLSDSNPMVVANAVAALSEMNEAST 652 (883)
Q Consensus 622 ~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~ 652 (883)
+..+..++...++.|...|+..|.-++...+
T Consensus 204 I~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 204 IQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 8999999999999999999999999987643
No 120
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=81.10 E-value=2.7 Score=41.85 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=48.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc
Q psy2915 549 NTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
..+.+=.+|+|+.+|+.|+-++-......-.+.+.+.+...+.|++.+|||+..-+|..+++.+|+.+
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 34556667888888888877554333334445566667778888888888888888888888887766
No 121
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.35 E-value=12 Score=34.20 Aligned_cols=75 Identities=9% Similarity=0.134 Sum_probs=47.2
Q ss_pred ccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhhh-----hHHHHHHHHhhcCCCChHHHhhHHHHHHHH
Q psy2915 537 AKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDKI-----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKL 608 (883)
Q Consensus 537 ~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~~-----~~~l~~~l~~~l~d~~~~VRk~A~~al~~l 608 (883)
.+.+++-..-++..|+|-+++.||.+...||..|-.+ .++.+ ...++..+.+.++..++.||.+....+..-
T Consensus 33 I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 33 VGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW 112 (140)
T ss_dssp HTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3444555566888899999999999988888866532 11111 122333444455556788888887777654
Q ss_pred Hhh
Q psy2915 609 YDI 611 (883)
Q Consensus 609 ~~~ 611 (883)
...
T Consensus 113 ~~~ 115 (140)
T 3ldz_A 113 TDE 115 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 122
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.12 E-value=3.8 Score=40.78 Aligned_cols=69 Identities=7% Similarity=-0.098 Sum_probs=48.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcc
Q psy2915 152 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQ 224 (883)
Q Consensus 152 l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~ 224 (883)
+.+.+.+...|++.++||.|+.++..-.+ .. .. ....+.+..++.|++..|..++-.+|.++.+.+|..
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~l~~~~-~~-~~--~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQLMLKE-KT-NQ--DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTTTTCGG-GC-CH--HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHH-CC-CH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 34456777888888888888887653321 11 11 224566666888888888888888888888888763
No 123
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=75.05 E-value=68 Score=33.65 Aligned_cols=141 Identities=10% Similarity=0.101 Sum_probs=89.5
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhccCCchhhHh-----HHHHHHhhcCCCCHHHHHHHHHHhcCCChh-----hhh--H
Q psy2915 513 DVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCEDSNPLIRALAVRTMGCIRVD-----KIT--E 580 (883)
Q Consensus 513 ~vi~ll~s~~~~~kr~~yl~~~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~vr~~AL~~L~~i~~~-----~~~--~ 580 (883)
++++.+.+++...+|-.-.-+..+...+.+.+.- -.+.|.+-..+.+..+..-||++++++-.- .+. +
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 3455555655555555555555533333332211 123444555677888999999999987443 332 3
Q ss_pred HHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc----c----------ccHHHHHHHhhc---CCChhHHHHHHHH
Q psy2915 581 YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE----D----------QGFLDQLKDLLS---DSNPMVVANAVAA 643 (883)
Q Consensus 581 ~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~----~----------~~~~~~l~~lL~---D~d~~V~~~a~~~ 643 (883)
.++.-|...+.+..+.|-|.|..-|..+....+.-.. . +.| +.+..+|. ..|..++.+|..+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~-~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPW-ANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTT-HHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcH-HHHHHHHhccCCCCHHHHHHHHHH
Confidence 3666677777888899988888888887766542221 0 013 45556776 5799999999999
Q ss_pred HHHHHhcCCCc
Q psy2915 644 LSEMNEASTSG 654 (883)
Q Consensus 644 l~~i~~~~~~~ 654 (883)
+..+...-|+.
T Consensus 281 IN~lL~~apd~ 291 (339)
T 3dad_A 281 INKTLAALPDQ 291 (339)
T ss_dssp HHHHHHHCSSH
T ss_pred HHHHHhcCCCh
Confidence 99998776654
No 124
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=75.02 E-value=3.6 Score=41.29 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=51.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccc
Q psy2915 550 TFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE 617 (883)
Q Consensus 550 ~l~kdl~~~n~~vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~ 617 (883)
.+.+=..|+|+.+|+.|+-.+-......-.+.+.+.+...+.|++.+|||+..-+|..+.+.+|+.+.
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 34555678889888888876644433333345666777888999999999999999999998888763
No 125
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=73.66 E-value=1e+02 Score=33.95 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=36.1
Q ss_pred CchHHHHHHHHhhccc---------CCcHHHHHHHHHHHhcCcCccCCHHHHHHhh
Q psy2915 835 NKYETIISTLCENLDT---------LDEPEARASMIWIIGEYAERIDNADELLESF 881 (883)
Q Consensus 835 ~~~~~~i~~L~~~l~~---------i~~~~~~~~~~w~lgey~~~~~~~~~~~~~~ 881 (883)
+.-..++..|++.++. -++|...+.+..=||||+...++...+++.+
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l 446 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT 446 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc
Confidence 3344677788887763 2367788888899999999999988888764
No 126
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=73.11 E-value=8.8 Score=38.50 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=57.3
Q ss_pred HHHHhhcCCCCHHHHHHHHH----HhcCCC----hhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccccccc
Q psy2915 549 NTFVKDCEDSNPLIRALAVR----TMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQG 620 (883)
Q Consensus 549 n~l~kdl~~~n~~vr~~AL~----~L~~i~----~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~ 620 (883)
..+.+=..|+++.+|+.|+- .++... +..-.+.++..+...+.|+..+||++..-+|..+.+.+|+... .
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~--~ 188 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHE--K 188 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHH--H
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHH--H
Confidence 34555567888999988888 555543 3345666777888899999999999999999999888888763 3
Q ss_pred HHHHHHHh
Q psy2915 621 FLDQLKDL 628 (883)
Q Consensus 621 ~~~~l~~l 628 (883)
++....++
T Consensus 189 al~~~~~l 196 (235)
T 1t06_A 189 AVEIAKEV 196 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44433333
No 127
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=71.06 E-value=6.6 Score=39.44 Aligned_cols=75 Identities=9% Similarity=0.030 Sum_probs=54.2
Q ss_pred hchhcCCCCHHHHHHHHH----HhccCC----chhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHH
Q psy2915 121 FVKDCEDSNPLIRALAVR----TMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFL 192 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr----~L~~i~----~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~ 192 (883)
+.+=..|+|+..|..|+- .++... ...-.+.+...+...+.|+..+|||+...++..+...+|+.+. .++
T Consensus 113 ~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~--~al 190 (235)
T 1t06_A 113 ADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHE--KAV 190 (235)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHH--HHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHH--HHH
Confidence 444467899999998888 555533 2345566677777788999999999999999988888888763 244
Q ss_pred HHHHH
Q psy2915 193 DQLKD 197 (883)
Q Consensus 193 ~~L~~ 197 (883)
+.-.+
T Consensus 191 ~~~~~ 195 (235)
T 1t06_A 191 EIAKE 195 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.46 E-value=19 Score=33.76 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=44.1
Q ss_pred CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chh----hhh-HHHHHHHHhhcCC-CChHHHhhHHHHHHHHHh
Q psy2915 540 HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---RVD----KIT-EYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYD 610 (883)
Q Consensus 540 ~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~----~~~-~~l~~~l~~~l~d-~~~~VRk~A~~al~~l~~ 610 (883)
+++-..-++..|+|-+++.||.++..||..|-.+ ... +++ ..++..+.+++.. .++.||+++...+..-..
T Consensus 46 ~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 46 TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3445566788899999999999988888877532 111 111 2233334444433 567888888776654433
Q ss_pred h
Q psy2915 611 I 611 (883)
Q Consensus 611 ~ 611 (883)
.
T Consensus 126 ~ 126 (163)
T 1x5b_A 126 E 126 (163)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=69.28 E-value=5.4 Score=39.98 Aligned_cols=66 Identities=8% Similarity=0.016 Sum_probs=41.8
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHHhccccCCcc
Q psy2915 155 PLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQ 224 (883)
Q Consensus 155 ~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ei~~~~~~~ 224 (883)
.+.+...|+++++||.|+.++...+. ..+. ....+.+..++.|++..|..+.-.+|.++.+.+|..
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~-~~d~---~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQ-KMDE---ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGG-GCCH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHh-CCCH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 45566777777777777776543221 1111 124455666777777777777777777777777653
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.01 E-value=28 Score=34.46 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=49.1
Q ss_pred hhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC------------ChhhhhHHHHHHHHhhcC-CCChHHHhhH
Q psy2915 535 NYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI------------RVDKITEYLCEPLRKCLK-DEDPYVRKTA 601 (883)
Q Consensus 535 ~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i------------~~~~~~~~l~~~l~~~l~-d~~~~VRk~A 601 (883)
...+.+++-..-++..|+|-++++||.+...||..|-.+ .+.++.+. +.+++. ..++.||.++
T Consensus 34 D~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~----l~~l~~~~~~~~Vk~ki 109 (226)
T 3zyq_A 34 DLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE----LKDLLKRQVEVNVRNKI 109 (226)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH----HHHHHHHCCCHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH----HHHHhccCCCHHHHHHH
Confidence 333444555567889999999999999999999987633 34444444 333333 4678899988
Q ss_pred HHHHHHHHh
Q psy2915 602 AVCVAKLYD 610 (883)
Q Consensus 602 ~~al~~l~~ 610 (883)
+..+..-..
T Consensus 110 l~li~~W~~ 118 (226)
T 3zyq_A 110 LYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877754443
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.12 E-value=36 Score=31.80 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=40.7
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
..++| ...+.+..+.+..+.-. .+.+..|.+.|..++|.|+..|+.+|..+.++
T Consensus 29 ~~~Dw----~~~leicD~I~~~~~~~--keA~ral~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 29 TTEDW----SLIMDICDKVGSTPNGA--KDCLKAIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp SSCCH----HHHHHHHHHHHHSSSHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcCH----HHHHHHHHHHhCCCccH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34566 55666767766665433 35668888889999999999999999999876
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.48 E-value=73 Score=29.17 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=52.7
Q ss_pred HhHHHHHhh-cCChhHHHHHHHHHHHHHhhCchhHHhcccceeeccCCCHHHHHHHHHHHHHhcChhhHHHHHHHHHHhh
Q psy2915 287 LAPPLVTLL-SSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYA 365 (883)
Q Consensus 287 ~~~~L~~lL-~~~~~vr~~aL~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~Ir~~aL~iL~~l~~~~nv~~Il~eL~~~~ 365 (883)
++..+.+-+ +.+|++.+.||..+..++++.+..|..++ ++. ..+++|...+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei------------------------as~----~Fl~eL~kl~ 100 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV------------------------GKF----RFLNELIKVV 100 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH------------------------TSH----HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH------------------------hhH----HHHHHHHHHH
Confidence 344444444 56889999999999999999988876543 221 1233443332
Q ss_pred ------hhcCHHHHHHHHHHHHHHHhhchhhH
Q psy2915 366 ------TEVDVDFVRKAVRAIGRCAIKVEQSA 391 (883)
Q Consensus 366 ------~~~d~~~r~~ai~aI~~la~k~~~~~ 391 (883)
...++.++.+++..|...+..|+..+
T Consensus 101 ~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 101 SPKYLGSRTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp CTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 24678899999999998888887654
No 133
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=64.65 E-value=1.6e+02 Score=31.77 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=95.9
Q ss_pred cccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHH-cccC-ChhhHHHHHHHHhcc----C
Q psy2915 618 DQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTA-LNEC-TEWGQVFILDSLSNY----S 691 (883)
Q Consensus 618 ~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~-l~~~-~~w~qi~iL~lL~~~----~ 691 (883)
|..|+-.|..+++.+||.-|...-..+..+-..-. .....+...+...+-. +.+. ..-+...+|++++.+ .
T Consensus 127 d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~---~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 127 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL---GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 45688889999999999999999999988764321 1222233333222221 2222 334566788887774 3
Q ss_pred CCChHHHHHH-HHHHhHhhcCCChHHH-HHHHHHHHHhhhhCCCChhhHHHHHHHhhhHHHHhccCCcchHHHHHHHHHH
Q psy2915 692 PKDDREAQSI-CERITPRLAHANAAVV-LSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINL 769 (883)
Q Consensus 692 ~~~~~~~~~i-l~~l~~~l~~~~~aV~-~eai~~i~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~niry~aL~~l~~ 769 (883)
..-.++...+ .+.+.++-...+-++- -+-+.|+..+. .++|.+...++..+.. .+=.+++.=.-.-|.-+..
T Consensus 204 ~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~---eKDp~L~~~vi~~LLk---~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 204 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL---EKDSTLTEPVVMALLK---YWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp SSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHH---HHCGGGHHHHHHHHHH---TCCSSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH---HhCchhHHHHHHHHHH---hCCCCCcHHHHHHHHHHHH
Confidence 3333345444 4666777665544222 12333333332 3455555544443322 2222444444445566777
Q ss_pred HHhhC-chhHhhcc-ce----eEEccCCCHHHHHHHHHHH
Q psy2915 770 IVQKR-PDILKHEM-KV----FFVKYNDPIYVKLEKLDIM 803 (883)
Q Consensus 770 l~~~~-~~~~~~~~-~~----~~~l~~dd~~Ir~~~l~lL 803 (883)
++... |.-+++.. +. -.|+.++...|.-+||.+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 77654 34444332 22 2367777777877777653
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.63 E-value=50 Score=30.31 Aligned_cols=85 Identities=6% Similarity=-0.093 Sum_probs=56.7
Q ss_pred HHHHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhh-----hhHHHHHHHHhhcCC------CCh
Q psy2915 530 YLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDK-----ITEYLCEPLRKCLKD------EDP 595 (883)
Q Consensus 530 yl~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~-----~~~~l~~~l~~~l~d------~~~ 595 (883)
.+.+....+.+++-..-++..|+|-++++||.+...||..|-.. .++. ....++..+.+.+.+ .++
T Consensus 32 ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~ 111 (149)
T 3g2s_A 32 INGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSE 111 (149)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCH
T ss_pred HHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCH
Confidence 34444445555666677889999999999999999999877633 1111 122344456666653 578
Q ss_pred HHHhhHHHHHHHHHhhccc
Q psy2915 596 YVRKTAAVCVAKLYDINAQ 614 (883)
Q Consensus 596 ~VRk~A~~al~~l~~~~~~ 614 (883)
.||.+....+..-...+++
T Consensus 112 ~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 112 KVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 8999988888766555443
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.03 E-value=50 Score=29.90 Aligned_cols=104 Identities=9% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHH
Q psy2915 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLT 670 (883)
Q Consensus 591 ~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~ 670 (883)
..++| ...+.+..+.+..|+-. .+.+..+.+.|..++|.|+..|+.++..+.++.. ..+...+.
T Consensus 19 ~~~dw----~~ileicD~I~~~~~~~--k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG----------~~f~~eva 82 (140)
T 3ldz_A 19 TAEDW----GLILDICDKVGQSRTGP--KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG----------KIFHLEVC 82 (140)
T ss_dssp SSCCH----HHHHHHHHHHTTSTTHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----------HHHHHHHS
T ss_pred CCcCH----HHHHHHHHHHHCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC----------HHHHHHHh
Confidence 44566 56667777766665433 3566888888999999999999998888877532 11111110
Q ss_pred HcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHhhhhCCCChhh
Q psy2915 671 ALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDF 737 (883)
Q Consensus 671 ~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~~~~~~~~~~l 737 (883)
..++++.+..++...++.|.-.+..++..|+..+++.+++
T Consensus 83 ---------------------------s~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l 122 (140)
T 3ldz_A 83 ---------------------------SRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQL 122 (140)
T ss_dssp ---------------------------SHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred ---------------------------hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 0133333333333456677777777777777666665543
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.60 E-value=39 Score=33.24 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=44.8
Q ss_pred cCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC------------ChhhhhHHHHHHHHhhcC-CCChHHHhhHHHH
Q psy2915 538 KSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI------------RVDKITEYLCEPLRKCLK-DEDPYVRKTAAVC 604 (883)
Q Consensus 538 ~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i------------~~~~~~~~l~~~l~~~l~-d~~~~VRk~A~~a 604 (883)
+.+++...-++..|+|-++++||.+...||..|-.+ .+.++.+.+ .+++. ..++.||++++.-
T Consensus 34 ~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l----~~l~~~~~~~~Vk~kil~l 109 (220)
T 1dvp_A 34 NQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF----SSFLESTPHENVRQKMLEL 109 (220)
T ss_dssp HTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH----HHHHHHCSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH----HHHhcCCCcHHHHHHHHHH
Confidence 344445566888999999999999999999877642 333344433 33333 4578888887766
Q ss_pred HHHH
Q psy2915 605 VAKL 608 (883)
Q Consensus 605 l~~l 608 (883)
+..-
T Consensus 110 i~~W 113 (220)
T 1dvp_A 110 VQTW 113 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6433
No 137
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=58.60 E-value=3.6e+02 Score=33.88 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=103.4
Q ss_pred hHhHHHHHHhhcCCCCHH--HHHHHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccH
Q psy2915 544 AIMAVNTFVKDCEDSNPL--IRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGF 621 (883)
Q Consensus 544 ~~l~~n~l~kdl~~~n~~--vr~~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~ 621 (883)
..-+-+.++|-+.++--. .-...++.-+. .-.+..+.++.....++.++++.||.-+...-..+++.+.+... .+.
T Consensus 362 rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~-vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~q-qeV 439 (1323)
T 3s4w_B 362 KKGVEKLLRNKIQSDCIQEQLLDSAFSTHYL-VLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQ-QEV 439 (1323)
T ss_dssp HHHHHHHHHHHHTTTCSCHHHHHHHHHHHHH-HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhH-HHH
Confidence 344555666666665322 11222221111 12345566666777788999999999999888888887744333 455
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhhHHHHHHHHhccC---CCC-h-H
Q psy2915 622 LDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYS---PKD-D-R 696 (883)
Q Consensus 622 ~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~---~~~-~-~ 696 (883)
+..|..-..+++..-+.+|+.+|.+++...| +.. ...-..+..++..+.+.++--..++.++|..++ +.+ . .
T Consensus 440 l~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~--~~l-~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~ 516 (1323)
T 3s4w_B 440 VGALVTHVCSGTEAEVDTALDVLLELIVLNA--SAM-RLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNH 516 (1323)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH--HHH-HHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCH
T ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH--HHH-hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 6666665566666667889999999997643 222 222234555556666666655556777776653 111 1 1
Q ss_pred HHHHHHHHHhHhhcCCChHH----HHHHHHHHHHh
Q psy2915 697 EAQSICERITPRLAHANAAV----VLSAVKVLMKL 727 (883)
Q Consensus 697 ~~~~il~~l~~~l~~~~~aV----~~eai~~i~~~ 727 (883)
-..++.-.+.+.+.+++.-. +..|+..+..+
T Consensus 517 i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~ 551 (1323)
T 3s4w_B 517 IQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIM 551 (1323)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHH
Confidence 12344456667777777622 22444455554
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.01 E-value=25 Score=32.29 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=46.1
Q ss_pred CchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC----Ch---hhh-hHHHHHHHHhhcCC------CChHHHhhHHHHH
Q psy2915 540 HPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RV---DKI-TEYLCEPLRKCLKD------EDPYVRKTAAVCV 605 (883)
Q Consensus 540 ~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i----~~---~~~-~~~l~~~l~~~l~d------~~~~VRk~A~~al 605 (883)
+++-..-++..|+|-++++||.+...||..|-.+ |. .++ ...++..+.+.+.+ .++.||.+++..+
T Consensus 32 ~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 32 DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 3444566788899999999999999999877632 11 111 23344556666653 3677888777766
Q ss_pred HHHHhh
Q psy2915 606 AKLYDI 611 (883)
Q Consensus 606 ~~l~~~ 611 (883)
..-...
T Consensus 112 ~~W~~~ 117 (148)
T 1mhq_A 112 FSWTVW 117 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544333
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.47 E-value=52 Score=30.96 Aligned_cols=49 Identities=8% Similarity=-0.014 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q psy2915 600 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEA 650 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~ 650 (883)
...+.+..+.+..+.-. .+.+..|.+.+..+|+.|+..|+.+|..+.++
T Consensus 32 ~~ileicD~I~~~~~~~--k~A~ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 32 EYIIGFCDQINKELEGP--QIAVRLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHHHHHHHSTTHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66777777777666533 34668888889999999999999999999875
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=55.65 E-value=48 Score=31.23 Aligned_cols=82 Identities=7% Similarity=-0.050 Sum_probs=53.1
Q ss_pred HHHhhccCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHhcCC---Chhh-----hhHHHHHHHHhhcC------CCChHH
Q psy2915 532 YLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI---RVDK-----ITEYLCEPLRKCLK------DEDPYV 597 (883)
Q Consensus 532 ~~~~~~~~~~~~~~l~~n~l~kdl~~~n~~vr~~AL~~L~~i---~~~~-----~~~~l~~~l~~~l~------d~~~~V 597 (883)
.+....+.+++-..-++..|+|-++++|+.++..||..|-.+ .+.. ....++..+.+++. ..++.|
T Consensus 36 eicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~V 115 (171)
T 1juq_A 36 GFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKV 115 (171)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHH
Confidence 333333444555666888999999999999999999887643 1111 11223444555554 246899
Q ss_pred HhhHHHHHHHHHhhcc
Q psy2915 598 RKTAAVCVAKLYDINA 613 (883)
Q Consensus 598 Rk~A~~al~~l~~~~~ 613 (883)
|++++..+..-...++
T Consensus 116 k~kil~li~~W~~~f~ 131 (171)
T 1juq_A 116 KTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999888876555444
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=48.48 E-value=70 Score=29.57 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=47.7
Q ss_pred HHhhccCCchhhHhHHHHHHhhcC-CCCHHHHHHHHHHhcCC----Ch---hhh-hHHHHHH-HHhhcC---CCChHHHh
Q psy2915 533 LMNYAKSHPDMAIMAVNTFVKDCE-DSNPLIRALAVRTMGCI----RV---DKI-TEYLCEP-LRKCLK---DEDPYVRK 599 (883)
Q Consensus 533 ~~~~~~~~~~~~~l~~n~l~kdl~-~~n~~vr~~AL~~L~~i----~~---~~~-~~~l~~~-l~~~l~---d~~~~VRk 599 (883)
+....+.+++-..-++..|+|-++ ++|+.++..||..|-.+ |. .++ ...++.. +.+.+. +++..||+
T Consensus 40 icD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ 119 (157)
T 1elk_A 40 ICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHD 119 (157)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHH
Confidence 333334445566778899999998 58999999999877632 11 111 1223333 344442 34568999
Q ss_pred hHHHHHHHHHh
Q psy2915 600 TAAVCVAKLYD 610 (883)
Q Consensus 600 ~A~~al~~l~~ 610 (883)
+++..+..-..
T Consensus 120 kil~li~~W~~ 130 (157)
T 1elk_A 120 KVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877754433
No 142
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=47.87 E-value=2.5e+02 Score=28.92 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhcCCChhh--------hhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHh
Q psy2915 558 SNPLIRALAVRTMGCIRVDK--------ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD 610 (883)
Q Consensus 558 ~n~~vr~~AL~~L~~i~~~~--------~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~ 610 (883)
.+|..+.+++|+++|+-... ..+.++..+..++.+++..+|-+++-.++.+.-
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv 220 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSV 220 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 45777899999999873321 223455566666678899999888888776654
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.83 E-value=1.8e+02 Score=26.52 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHhcHHHHHHHHHHcccCChhh
Q psy2915 600 TAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWG 679 (883)
Q Consensus 600 ~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l~~~~~~~L~~~l~~~~~w~ 679 (883)
.+.+.+..+.+..+... ...+..+...|..+||.|+..|+.+|..+.++.. ..+..-+.
T Consensus 20 ~~~leicD~I~~~~~~~--k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG----------~~fh~eva--------- 78 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGP--THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG----------EKFHSEVA--------- 78 (148)
T ss_dssp HHHHHHHHHHHHSSHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----------HHHHHHHT---------
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC----------HHHHHHHh---------
Confidence 55666666666555332 3456777777888888888888888888776532 11111110
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHHhHhhcC------CChHHHHHHHHHHHHhhhhCCCChh
Q psy2915 680 QVFILDSLSNYSPKDDREAQSICERITPRLAH------ANAAVVLSAVKVLMKLMEMLPGEGD 736 (883)
Q Consensus 680 qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~------~~~aV~~eai~~i~~~~~~~~~~~~ 736 (883)
..++++.+.+++.. .+..|.-.+..++-.|+..+++.|.
T Consensus 79 ------------------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~ 123 (148)
T 1mhq_A 79 ------------------KFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIK 123 (148)
T ss_dssp ------------------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ------------------hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCch
Confidence 02455555555442 3557777777888888766666543
No 144
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=45.24 E-value=83 Score=28.18 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=50.3
Q ss_pred HHHHHhcCCChhhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhcCCChhHHHHHHHHH
Q psy2915 565 LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAL 644 (883)
Q Consensus 565 ~AL~~L~~i~~~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l 644 (883)
.|++.|..++.+++.+ ++|.+...+.|.||-|....+.-|.++ |+ .+++.+.+.|..+|..=....+..+
T Consensus 16 ~a~~~L~~~~~~~i~p-~lp~LL~WLQD~NWPvA~~i~~~L~~~----~~-----~l~p~I~~vl~s~D~~W~ywil~~l 85 (134)
T 3ut4_A 16 STIDQLCKLIDNEIEP-IIFDLLKWLQDYNWPIAKDILPVVVLH----QS-----IAMPHILTILQGNDIMWKYWVIKLM 85 (134)
T ss_dssp TTHHHHTTCCHHHHHH-HHHHHHGGGSCTTSTTHHHHHHHHHHT----HH-----HHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHc----cH-----hhHHHHHHHHHcCChHHHHHHHHHH
Confidence 3567778887666554 678899999999999988777666533 32 3568888888888877766665443
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=42.04 E-value=2.3e+02 Score=31.23 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=48.5
Q ss_pred HHHHHHHhHhhcC----------CChHHHHHHHHHHHHhhhhCCCChhhHHHHHHHhh--hHHHHhcc-CCcchHHHHHH
Q psy2915 699 QSICERITPRLAH----------ANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLA--PPLVTLLS-SEPEVQYVALR 765 (883)
Q Consensus 699 ~~il~~l~~~l~~----------~~~aV~~eai~~i~~~~~~~~~~~~l~~~~~~~~~--~~L~~ll~-~~~niry~aL~ 765 (883)
.+++..|.+++.+ .++.++.=|+.=++.+..+.|... ..++.++ ..++.|++ .++++||-||.
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr----~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESI----DVLDKTGGKADIMELLNHSDSRVKYEALK 469 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHH----HHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchh----HHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 3667777777763 345777777888888877777653 3333333 33446666 68999999999
Q ss_pred HHHHHHhh
Q psy2915 766 NINLIVQK 773 (883)
Q Consensus 766 ~l~~l~~~ 773 (883)
++.++...
T Consensus 470 avQklm~~ 477 (480)
T 1ho8_A 470 ATQAIIGY 477 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988754
No 146
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=40.21 E-value=3.4e+02 Score=28.31 Aligned_cols=106 Identities=12% Similarity=0.145 Sum_probs=69.9
Q ss_pred HhhcCCCChHHHhhHHHHHHHHHhhccccccc------ccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhhHHh
Q psy2915 587 RKCLKDEDPYVRKTAAVCVAKLYDINAQLVED------QGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEM 660 (883)
Q Consensus 587 ~~~l~d~~~~VRk~A~~al~~l~~~~~~~~~~------~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~~~l 660 (883)
.+-+..++-.|-.-|...+-.+...++..+.+ ..|...+..||..+|.-.+..++.+|+++.-..++
T Consensus 170 F~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N------- 242 (341)
T 1upk_A 170 FRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN------- 242 (341)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG-------
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH-------
Confidence 34556777777777777776665544433221 24677888999999999999999999999865322
Q ss_pred cHHHHHHHHHHcccCChhhHHHHHHHHhccCCCChHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHh
Q psy2915 661 NAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKL 727 (883)
Q Consensus 661 ~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~l~~~~~aV~~eai~~i~~~ 727 (883)
+.-+.+ |.. ++ +-+..+.++|++.+..|.+||.+++=-+
T Consensus 243 ----~~vM~~-------------------Yis-~~----~nLkl~M~LL~d~sk~Iq~EAFhVFKvF 281 (341)
T 1upk_A 243 ----FTIMTK-------------------YIS-KP----ENLKLMMNLLRDKSRNIQFEAFHVFKVF 281 (341)
T ss_dssp ----HHHHHH-------------------HTT-CH----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHH-------------------HhC-CH----HHHHHHHHHhcCchhchhhhhhhheeee
Confidence 111222 111 11 4466777778888888888887775443
No 147
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=37.00 E-value=3.9e+02 Score=27.94 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHhhcCCCChHHHhhHHHHHHHHHhhc------ccccccccHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCchhh
Q psy2915 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDIN------AQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVAL 657 (883)
Q Consensus 584 ~~l~~~l~d~~~~VRk~A~~al~~l~~~~------~~~~~~~~~~~~l~~lL~D~d~~V~~~a~~~l~~i~~~~~~~~~~ 657 (883)
....+++.+++--.|+.++.-|+.+.-.- ...+.+++-...+-.+|.|+...++..|..++--...+...+
T Consensus 212 ~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~--- 288 (341)
T 1upk_A 212 SEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT--- 288 (341)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC---
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC---
Confidence 34445556666666666666666554311 111233445677888999999999999999888777653233
Q ss_pred HHhcHHHHHHHHHHcccCChhhHHHHHHHHhccCCC
Q psy2915 658 IEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPK 693 (883)
Q Consensus 658 ~~l~~~~~~~L~~~l~~~~~w~qi~iL~lL~~~~~~ 693 (883)
+.+..++.. .+-+++++|..+.+.
T Consensus 289 -----~~I~~IL~~-------Nr~kLl~fl~~f~~d 312 (341)
T 1upk_A 289 -----QPILDILLK-------NQAKLIEFLSKFQND 312 (341)
T ss_dssp -----HHHHHHHHH-------THHHHHHHHHHTTTT
T ss_pred -----hHHHHHHHH-------HHHHHHHHHHhCCCC
Confidence 333344432 277889999998754
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.17 E-value=1.6e+02 Score=28.91 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=55.3
Q ss_pred hHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccc----ccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcC
Q psy2915 579 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQ----LVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEAS 651 (883)
Q Consensus 579 ~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~----~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~ 651 (883)
....+..|++.+.+++|.|-..|+.-+-.+.+.... .+...+|++.|..++. ..++.|+.-++.++..-....
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 455666788999999999999888888777765333 2334678888888886 467889999999888877543
No 149
>3qb2_A Immunity factor for SPN; glycohydrolase inhibitor, streptococcus pyogenes glycohydrol toxin, hydrolase inhibitor; 2.50A {Streptococcus pyogenes} PDB: 3pnt_B
Probab=34.34 E-value=50 Score=30.28 Aligned_cols=87 Identities=15% Similarity=0.317 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHhhCCC-----chHHHHHHHHhhcccCCcHHHHHHHH-HHHh
Q psy2915 792 PIYVKLEKLDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPN-----KYETIISTLCENLDTLDEPEARASMI-WIIG 865 (883)
Q Consensus 792 d~~Ir~~~l~lL~~l~~~~N~~~~~~~~~e~i~~i~~l~~~~p~-----~~~~~i~~L~~~l~~i~~~~~~~~~~-w~lg 865 (883)
|.-|++++-++|..+..+.++.....+++ .+..=..+...|.+ ....+++.+.+. +.+...+.++. |-+|
T Consensus 66 d~dI~~rTfeiLkefS~S~d~v~LyQVt~-yI~~Qn~lL~~Y~~LPF~Ietd~iv~nIieS---isd~~i~~~m~~y~~g 141 (187)
T 3qb2_A 66 YTQLKANIEEALLEMSNSGQALDIYQAVQ-TLNAENMLLNYYESLPFYLNRQSILANITKA---LKDAHIREAMAHYKLG 141 (187)
T ss_dssp CTTHHHHHHHHHHHHHTSCCHHHHHHHHH-HHHHHHHHHHHHSCCSCCCCCHHHHHHHHHH---HTSHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhccCCCeEEechHHHHHHHHh---cChHHHHHHHHHhccc
Confidence 67799999999999999999876433322 22222344555533 467778877765 44555666554 9999
Q ss_pred cCcCccCCHHHHHHhhh
Q psy2915 866 EYAERIDNADELLESFL 882 (883)
Q Consensus 866 ey~~~~~~~~~~~~~~~ 882 (883)
||++.-+...+++|.-+
T Consensus 142 efa~y~d~~~dm~er~~ 158 (187)
T 3qb2_A 142 EFAHYQDTMLDMVERTI 158 (187)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred hHHHhHhHHHHHHHHHH
Confidence 99998777666666543
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.53 E-value=2.2e+02 Score=26.11 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=39.6
Q ss_pred CCChHHHhhHHHHHHHHHhhcccccccccHHHHHHHhhc-CCChhHHHHHHHHHHHHHhcC
Q psy2915 592 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEMNEAS 651 (883)
Q Consensus 592 d~~~~VRk~A~~al~~l~~~~~~~~~~~~~~~~l~~lL~-D~d~~V~~~a~~~l~~i~~~~ 651 (883)
+++| ...+.+..+.+..+.-. .+.+..+.+.|. .+|+.|+..|+.+|..+.++.
T Consensus 31 ~~Dw----~~~leicD~I~~~~~~~--k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc 85 (157)
T 1elk_A 31 SEDW----ALNMEICDIINETEEGP--KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNC 85 (157)
T ss_dssp SCCH----HHHHHHHHHHHHSSSHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred CcCH----HHHHHHHHHHhCCCccH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4555 55666666666655433 356788888887 689999999999999998763
No 151
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=28.98 E-value=2.1e+02 Score=33.95 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=60.0
Q ss_pred hhhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhcc---cccccccHHHHHHHhhcC---CChhHHHHHHHHHHHHHh
Q psy2915 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA---QLVEDQGFLDQLKDLLSD---SNPMVVANAVAALSEMNE 649 (883)
Q Consensus 576 ~~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~---~~~~~~~~~~~l~~lL~D---~d~~V~~~a~~~l~~i~~ 649 (883)
.++++.+.|.+..++-+++..+...+..|+..+.-..| +.+- +..++.+...|+. ..+.=..+|+.++..++.
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 55777888999999999999999999999999999888 8876 4566777777776 677777788888887774
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.60 E-value=2.2e+02 Score=27.67 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=35.8
Q ss_pred hchhcCCCCHHHHHHHHHHhccC------------CchhhhHHHHHHHHhhcCCCChhHHHHHHHHHH
Q psy2915 121 FVKDCEDSNPLIRALAVRTMGCI------------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 176 (883)
Q Consensus 121 l~kDL~~~n~~vr~lALr~L~~i------------~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~ 176 (883)
|+|-++++||.++-+||..|-.+ .+.++.+.+...+.+ ..++.||+++..-+.
T Consensus 47 l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 47 IKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHH
Confidence 89999999999999999777653 333444444433322 456789888765444
No 153
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=26.69 E-value=1.7e+02 Score=26.08 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=51.3
Q ss_pred HHHHhccCCchhhhHHHHHHHHhhcCCCChhHHHHHHHHHHHHhhhCccccccccHHHHHHHHhcCCChhHHHHHHHHHH
Q psy2915 136 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAIL 215 (883)
Q Consensus 136 ALr~L~~i~~~~~~~~l~~~v~~~l~d~~~~VRk~A~~al~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V~~~a~~~L~ 215 (883)
|++.|+.++.+++.+ +.+.+...+.|.|+-|....+--+.+. | ..+++.+.+.|+.+|..=....+..+.
T Consensus 17 a~~~L~~~~~~~i~p-~lp~LL~WLQD~NWPvA~~i~~~L~~~----~-----~~l~p~I~~vl~s~D~~W~ywil~~lv 86 (134)
T 3ut4_A 17 TIDQLCKLIDNEIEP-IIFDLLKWLQDYNWPIAKDILPVVVLH----Q-----SIAMPHILTILQGNDIMWKYWVIKLMI 86 (134)
T ss_dssp THHHHTTCCHHHHHH-HHHHHHGGGSCTTSTTHHHHHHHHHHT----H-----HHHHHHHHHHHHSSCHHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHH-HHHHHHHHHhcCCCccHHHHHHHHHHc----c-----HhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 567777776666555 667889999999999988766666543 2 236688888888888887777665544
No 154
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=25.00 E-value=64 Score=29.20 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHhhcCCCChHHHhhHHHHHHHHHhhccccc
Q psy2915 577 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616 (883)
Q Consensus 577 ~~~~~l~~~l~~~l~d~~~~VRk~A~~al~~l~~~~~~~~ 616 (883)
+..+.++..|.+.|++++|+|+.||+..|-.+++.+++.+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 4456777888888999999999999999988887776554
No 155
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.88 E-value=1.6e+02 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHhHHHHHhhc--CChhHHHHHHHHHHHHHhhCchhHHhc
Q psy2915 285 KKLAPPLVTLLS--SEPEVQYVALRNINLIVQKRPDILKHE 323 (883)
Q Consensus 285 ~~~~~~L~~lL~--~~~~vr~~aL~~l~~l~~~~~~~~~~~ 323 (883)
+.++..+.+-|. .++++.+.||..+..++++.+..|...
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 334444555453 366788899999999999998877654
No 156
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=22.18 E-value=7.2e+02 Score=29.22 Aligned_cols=121 Identities=11% Similarity=0.180 Sum_probs=74.9
Q ss_pred HHHHHhcCh--hhHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhHhhhhhCC-HHHHHHH
Q psy2915 343 DIMIRLASQ--ANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDN-ADELLES 419 (883)
Q Consensus 343 ~iL~~l~~~--~nv~~Il~eL~~~~~~~d~~~r~~ai~aI~~la~k~~~~~~~~v~~Ll~lL~~~~~~~i~~-~~~il~~ 419 (883)
.++.++++. +|.+.-++.|.+.+.+..+..|...++.+-+++...|.. ..+..+++.++....++.... ...+...
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~K-t~vyAaLVgllN~k~pe~G~~lv~~l~~~ 92 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEK-LTIYTTLVGLLNARNYNFGGEFVEAMIRQ 92 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 345555542 455566666666665556778999999999999999876 455688888888753332221 1222333
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhc---CCchHHHHHHHHHHHhhcC
Q psy2915 420 FLEGFHDENTQVQLQLLTAIVKLFLK---RPTDTQELVQQVLSLATQD 464 (883)
Q Consensus 420 l~~~~~~~~~~vr~~~L~al~Kl~~~---~~~~~~~~l~~ll~~~~~d 464 (883)
+-+.+...+...-..++.-++-+... .+...-+++..++..+.++
T Consensus 93 f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~ 140 (771)
T 1h2v_C 93 LKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE 140 (771)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhc
Confidence 33445555555444556666666543 3445777777788877665
Done!