RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2915
(883 letters)
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 498 bits (1284), Expect = e-167
Identities = 368/563 (65%), Positives = 402/563 (71%), Gaps = 109/563 (19%)
Query: 1 MTDSKYFTTTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQT 60
MTDSKYFTT KKGEIFELK ELN++KKEK++EAVKKVIA+MTVGKDVS+LFPDVVNCMQT
Sbjct: 1 MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQT 60
Query: 61 DNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGV 120
DNLELKKLVYLYLMNYAKS PDMAIMA ++
Sbjct: 61 DNLELKKLVYLYLMNYAKSQPDMAIMAVNS------------------------------ 90
Query: 121 FVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD 180
FVKDCED NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL+D
Sbjct: 91 FVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD 150
Query: 181 INAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKS---YWQRNLSSRKKQIC-- 235
INAQ+VEDQGFLD L+DL++DSNPMVVANAVAA+ + ++
Sbjct: 151 INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTA 210
Query: 236 ------WNLPYLMNLSVIY----PAWPLSTINPHTPLL------------KVLMKLMEML 273
W ++++ Y S TP L KVLMK +E+L
Sbjct: 211 LNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL 270
Query: 274 PGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYND 333
P + D+ + L KKLAPPLVTLLS EPEVQYVALRNINLIVQKRP+ILK E+KVFFVKYND
Sbjct: 271 PKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYND 330
Query: 334 PIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER 393
PIYVKLEKLDIMIRLASQANIAQVL+ELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER
Sbjct: 331 PIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER 390
Query: 394 CVSTLLDLIQTK------------------------------------------------ 405
CVSTLLDLIQTK
Sbjct: 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIW 450
Query: 406 ----YAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLA 461
YAERIDNADELLESFLEGFHDE+TQVQL LLTAIVKLFLK+P++TQELVQQVLSLA
Sbjct: 451 IVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLA 510
Query: 462 TQDSDNPDLRDRGFIYWRLLSTG 484
TQDSDNPDLRDRG+IYWRLLST
Sbjct: 511 TQDSDNPDLRDRGYIYWRLLSTD 533
Score = 463 bits (1194), Expect = e-154
Identities = 316/436 (72%), Positives = 351/436 (80%), Gaps = 50/436 (11%)
Query: 497 VIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE 556
VIA+MTVGKDVS+LFPDVVNCMQTDNLELKKLVYLYLMNYAKS PDMAIMAVN+FVKDCE
Sbjct: 37 VIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCE 96
Query: 557 DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616
D NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL+DINAQ+V
Sbjct: 97 DPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156
Query: 617 EDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECT 676
EDQGFLD L+DL++DSNPMVVANAVAALSE++E+ + L+++N Q INKLLTALNECT
Sbjct: 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLNPQNINKLLTALNECT 215
Query: 677 EWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGD 736
EWGQ+FILD LSNY+PKDDREAQSICER+TPRL+HAN+AVVLSAVKVLMK +E+LP + D
Sbjct: 216 EWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 275
Query: 737 FVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVK 796
+ + L KKLAPPLVTLLS EPEVQYVALRNINLIVQKRP+ILK E+KVFFVKYNDPIYVK
Sbjct: 276 YYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVK 335
Query: 797 LEKLDIMIRLASQANIAQV------------NYVVQEAIVVIKDIFRKYPNKYETIISTL 844
LEKLDIMIRLASQANIAQV V++A+ I K E +STL
Sbjct: 336 LEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTL 395
Query: 845 -------------------------------------CENLDTLDEPEARASMIWIIGEY 867
CENLD+LDEP+ARA+MIWI+GEY
Sbjct: 396 LDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEY 455
Query: 868 AERIDNADELLESFLE 883
AERIDNADELLESFLE
Sbjct: 456 AERIDNADELLESFLE 471
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 334 bits (858), Expect = e-104
Identities = 76/457 (16%), Positives = 168/457 (36%), Gaps = 80/457 (17%)
Query: 497 VIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE 556
++ +G + + + + K++ YL M D+ ++ N D
Sbjct: 58 LLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLN 117
Query: 557 DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV 616
S ++ LA+ T+GC+ ++ L + K LK + Y+RK AA+C + +L+
Sbjct: 118 HSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM 177
Query: 617 EDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL---- 672
E FL K+LL++ N V+ +V L+EM E S +A + ++L L
Sbjct: 178 EM--FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSG 235
Query: 673 --------NECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVL 724
+ QV IL L DD ++++ + + + + + +
Sbjct: 236 YSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY 295
Query: 725 MKLMEMLPGEGDFVSTLTKKLAPPLVT--LLSSEPEVQYVALRNINLIVQKRPDIL-KHE 781
++ ++ + + + + LA ++ LL+++ ++YVAL ++ VQ + + +H
Sbjct: 296 ETVLTIMDIKSE---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR 352
Query: 782 MKVFFVKYNDPIYVKLEK------------------------------------------ 799
+ + + +K
Sbjct: 353 STIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLA 412
Query: 800 -----------LDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPNKYETIISTLCENL 848
+D ++R+ + A +YV +A+ + + + + L + +
Sbjct: 413 AEKYAPSKRWHIDTIMRVLTTAG----SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAI 468
Query: 849 --DTLDEPEARASMIWIIGEYAERIDNADELLESFLE 883
D +P + W IGEY + + + E ++
Sbjct: 469 LGDYSQQPLVQV-AAWCIGEYGDLLVSGQCEEEEPIQ 504
Score = 322 bits (827), Expect = 2e-99
Identities = 92/609 (15%), Positives = 193/609 (31%), Gaps = 153/609 (25%)
Query: 14 EIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYL 73
E ++ + + V K++ +G + + + + K++ YL
Sbjct: 35 ECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGA 94
Query: 74 MNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIR 133
M D+ ++ + D S ++
Sbjct: 95 MLLLDERQDVHLLMTNCI------------------------------KNDLNHSTQFVQ 124
Query: 134 ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD 193
LA+ T+GC+ ++ L + K LK + Y+RK AA+C + +L+E FL
Sbjct: 125 GLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEM--FLP 182
Query: 194 QLKDLLSDSNPMVVANAVAAILLL------PRKSYWQ--RNLSSRKKQIC---------- 235
K+LL++ N V+ +V + + + + L K +
Sbjct: 183 ATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDV 242
Query: 236 ------WNLPYLMNLSVIYPAW----------PLSTINPHTPLLKVL--------MKLME 271
+ ++ L I L+ + +T K + + +
Sbjct: 243 SGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIM 302
Query: 272 MLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDIL-KHEMKVFFVK 330
+ E L L L+++ ++YVAL ++ VQ + + +H +
Sbjct: 303 DIKSESGLRVLAINILGRFL---LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL 359
Query: 331 YNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS 390
+ + +K +++ L + NI ++ EL + + +F I A K S
Sbjct: 360 KDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS 419
Query: 391 AERCVSTLLDLIQTK--------------------------------------------- 405
+ T++ ++ T
Sbjct: 420 KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ 479
Query: 406 --------YAERIDNADELLESFLEGFHDE--------------NTQVQLQLLTAIVKLF 443
Y + + + E ++ DE + + LTAI+KL
Sbjct: 480 VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLS 539
Query: 444 LKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTV 503
R T T +++V+S+ S + +L+ R Y L + H+ ++ M V
Sbjct: 540 -TRFTCTVNRIKKVVSIYGS-SIDVELQQRAVEYNALFKKYD------HMRSALLERMPV 591
Query: 504 GKDVSALFP 512
+ V+ P
Sbjct: 592 MEKVTTNGP 600
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 319 bits (819), Expect = 2e-98
Identities = 86/588 (14%), Positives = 182/588 (30%), Gaps = 146/588 (24%)
Query: 14 EIFELKGELNSDKK---EKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVY 70
E+ ++ + DK K++ V K++ +G D+ + VN + ++ K++ Y
Sbjct: 36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGY 95
Query: 71 LYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNP 130
L++ S+ ++ + + D NP
Sbjct: 96 LFISVLVNSNSELIRLINNAI------------------------------KNDLASRNP 125
Query: 131 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDED--PYVRKTAAVCVAKLYDINAQLVED 188
LA+ + + ++ E + K L D V+++AA+C+ +LY + LV
Sbjct: 126 TFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM 185
Query: 189 QGFLDQLKDLLSDSNPMVVANAVAAIL-----------------------LLPRKSYWQR 225
+ ++ LL+D + VV A + I ++ S +
Sbjct: 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQ 245
Query: 226 NLSSRKKQICWNLPYLMNLSVIYPAW------------------------PLSTINPHTP 261
+ + W L+ L YP +
Sbjct: 246 DYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305
Query: 262 LLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPD--- 318
VL + + ++ + L + L E ++Y+AL ++ +
Sbjct: 306 KNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA 365
Query: 319 ILKH-EMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAV 377
+ H E + +K + V+ +D++ + ++N Q+++E+ Y D + V
Sbjct: 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIV 425
Query: 378 RAIGRCAIKVEQSAERCVSTLLDLIQTK-------------------------------- 405
+ A K V T+L+LI+
Sbjct: 426 LKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFE 485
Query: 406 ---------------------YAERIDNADE-----LLESFLEGFHDENTQVQLQLLTAI 439
+ I FH + + LL+
Sbjct: 486 ALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTY 545
Query: 440 VKLFLKRPTDTQELVQQVLSLATQ-DSDNPDLRDRGFIYWRLLSTGNT 486
+K + + +Q VL +Q + + +L+ R Y RL + +T
Sbjct: 546 IKFV-NLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST 592
Score = 305 bits (782), Expect = 5e-93
Identities = 71/476 (14%), Positives = 159/476 (33%), Gaps = 103/476 (21%)
Query: 497 VIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE 556
++ +G D+ + VN + ++ K++ YL++ S+ ++ + N D
Sbjct: 62 LLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLA 121
Query: 557 DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDED--PYVRKTAAVCVAKLYDINAQ 614
NP LA+ + + ++ E + K L D V+++AA+C+ +LY +
Sbjct: 122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD 181
Query: 615 LVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVA-LIEMNAQTINKLLTALN 673
LV + ++ LL+D + VV A + ++ + + + + + +++++T+ +
Sbjct: 182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSAS 241
Query: 674 E----------CTEWGQVFILDSLSNYSPKDDREAQSICERI-------------TPRLA 710
W V +L L Y P +D + + ++
Sbjct: 242 TDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301
Query: 711 HANA--AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNIN 768
H+NA AV+ A+ +++ + L + L E ++Y+AL ++
Sbjct: 302 HSNAKNAVLFEAISLIIHHDS-------EPNLLVRACNQLGQFLQHRETNLRYLALESMC 354
Query: 769 LIVQKRPD---ILKH-EMKVFFVKYNDPIYVKLEK------------------------- 799
+ + H E + +K + V+
Sbjct: 355 TLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLE 414
Query: 800 ----------------------------LDIMIRLASQANIAQVNYVVQEAIVVIKDIFR 831
+D ++ L A +YV +E + I
Sbjct: 415 TADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA----GDYVSEEVWYRVIQIVI 470
Query: 832 KYPNKYETIISTLCENLDTLDEPEARASMI----WIIGEYAERIDNADELLESFLE 883
+ T+ E L P +++ +I+GE+ I
Sbjct: 471 NRDDVQGYAAKTVFEA---LQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQF 523
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 213 bits (543), Expect = 3e-62
Identities = 45/291 (15%), Positives = 112/291 (38%), Gaps = 28/291 (9%)
Query: 497 VIASMTVGKD-----VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTF 551
++ + G+ + F + Q+++ L+++ YL + + + I+ ++
Sbjct: 51 ILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSL 109
Query: 552 VKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI 611
KD R AVR + I + + + +++ + D+ P V +A V L
Sbjct: 110 TKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC 169
Query: 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTA 671
+ +V+ ++++ ++ S N MV +A+ L + + + ++K+++
Sbjct: 170 SFDVVKR--WVNEAQEAASSDNIMVQYHALGLLYHVR----------KNDRLAVSKMISK 217
Query: 672 LNECT---EWGQVFILDSLSNYSPKDD-REAQSICERITPRLAHANAAVVLSAVKVLMKL 727
+ ++ S +D + + I L + + VV A ++ L
Sbjct: 218 FTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL 277
Query: 728 MEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDIL 778
E L ++ + S + ++Y A+R +N + K P +
Sbjct: 278 PGCSAKE------LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV 322
Score = 170 bits (432), Expect = 6e-47
Identities = 45/347 (12%), Positives = 107/347 (30%), Gaps = 64/347 (18%)
Query: 1 MTDSKYFTTTKKGEIFELKGELN--SDKKEKKREAVKKVIASMTVGKD-----VSALFPD 53
S F +K + + N K + K++ + G+ + F
Sbjct: 13 GGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFA 72
Query: 54 VVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFD 113
+ Q+++ L+++ YL + + D+ I+
Sbjct: 73 MTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIV--------------------------- 105
Query: 114 LCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAV 173
KD R AVR + I + + + +++ + D+ P V +A V
Sbjct: 106 ----TSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALV 161
Query: 174 CVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAIL---------------LLP 218
L + +V+ ++++ ++ S N MV +A+ +
Sbjct: 162 SSLHLLKCSFDVVKR--WVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219
Query: 219 RKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWP-----LSTINPHTPLLKVLMKLMEML 273
R ++ + S P + L + + + ++ +
Sbjct: 220 RHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMV-VYEAASAIVNLP 278
Query: 274 PGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDIL 320
++ L + S + ++Y A+R +N + K P +
Sbjct: 279 GCSAKELAPAVSVLQ---LFCSSPKAALRYAAVRTLNKVAMKHPSAV 322
Score = 33.1 bits (75), Expect = 0.36
Identities = 34/313 (10%), Positives = 89/313 (28%), Gaps = 16/313 (5%)
Query: 264 KVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQ----YVALRNINLIVQKRPDI 319
+L K++ ++ +T + + L S Y+ ++ ++ +
Sbjct: 46 HILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMS----CIAED 101
Query: 320 LKHEMKVFFVKYNDP-IYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRK-AV 377
+ + + + ++ + + +K+ + V A+
Sbjct: 102 VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKV-PSVSSSAL 160
Query: 378 RAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLT 437
+ +R V+ + + +A LL + + ++++
Sbjct: 161 VSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK----NDRLAVSKMIS 216
Query: 438 AIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLV 497
+ LK P +++ + + D FI L + +
Sbjct: 217 KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN 276
Query: 498 IASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCED 557
+ + + A+ + C L+ L A HP D
Sbjct: 277 LPGCSAKELAPAVSVLQLFCSSPKA-ALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335
Query: 558 SNPLIRALAVRTM 570
+N I LA+ T+
Sbjct: 336 ANRSIATLAITTL 348
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.7 bits (211), Expect = 4e-17
Identities = 75/521 (14%), Positives = 162/521 (31%), Gaps = 127/521 (24%)
Query: 4 SKYFTTTKKGEIFELKGELNSDKKEKKREAV---------KKVIASMTV-GKDVSALFPD 53
+KY + + +L+ L + K V K +A V
Sbjct: 127 AKYNVSRLQ-PYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 54 VV------NCMQTDNLELKKLVYLYLM---NYA---------KSHPDMAIMAFSTFFYQK 95
+ NC + L+ L L N+ K K
Sbjct: 183 KIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 96 SSSSFQCMIDIRSIPLFDLCSS--VGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLC 153
C++ + ++ ++ F C + L + T R ++T++L
Sbjct: 242 PYE--NCLLVLL-----NVQNAKAWNAFNLSC-------KIL-LTT----RFKQVTDFLS 282
Query: 154 EPLRKCLKDEDPYV----RKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 209
+ + + + ++ K D Q L + +NP ++
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQ---------DLPREVLTTNPRRLS- 331
Query: 210 AVAAIL--LLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPA------WPLSTINPHTP 261
+A + L W+ + I +L+V+ PA LS P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 262 L-LKVLMKL-MEMLPGE-GDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPD 318
+ +L + +++ + V+ L K +L+ +P+ +++ +I L ++ + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY------SLVEKQPKESTISIPSIYLELKVKLE 440
Query: 319 ILK--HEMKVFFVKYN-----DPIYVKLEKLD------IMIRLASQANIAQVLSELKE-Y 364
H + YN D + LD I L + ++ + +
Sbjct: 441 NEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRMVF 497
Query: 365 ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT--KYAERI---DNADELLES 419
+D F+ + +R +A ++L+ +Q Y I D E L +
Sbjct: 498 ---LDFRFLEQKIRHDS--------TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 420 FLEGF-HDENTQVQLQLLTAIVKLFLKRPTDT--QELVQQV 457
+ F + T ++++ L + +E +QV
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 70.7 bits (172), Expect = 2e-12
Identities = 79/504 (15%), Positives = 144/504 (28%), Gaps = 145/504 (28%)
Query: 427 ENTQVQLQ-------LLTAIVKLFLKRPTDTQELVQQVLSLATQD----SDNPDLRDRGF 475
E + Q Q A V F + D Q++ + +LS D S +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTL-R 66
Query: 476 IYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMN 535
++W LLS F V ++ + Y +LM+
Sbjct: 67 LFWTLLSKQEEMV--------------------QKF--VEEVLRIN--------YKFLMS 96
Query: 536 YAKSHPDMAIMAVNTFVKDCED----SNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 591
K+ M ++ + D N + V R+ + LR+ L
Sbjct: 97 PIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVS-----RLQPYLK-----LRQALL 145
Query: 592 --DEDPYVR--------KT---AAVC----VAKLYD-----IN-AQLVEDQGFLDQLKDL 628
V KT VC V D +N + L+ L+ L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 629 LSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTA--LNECTEWGQVFILDS 686
L +P + ++ S++ I + +LL + C + +L +
Sbjct: 206 LYQIDPN--------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLN 252
Query: 687 LSNYSPKDDREAQSI-CERI--TPRLAHANAAVVLSAVKVLMKLMEMLPG--EGDFVSTL 741
+ N A ++ C +I T R + +A + L + S L
Sbjct: 253 VQN---AKAWNAFNLSC-KILLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 742 TKKLAPPLVTLLSSEPEVQYVALRNINLI---VQKRPDILKHEMKVFFVKYNDPIYVKLE 798
K L L EV R +++I ++ + V K I L
Sbjct: 308 LKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 799 KLDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEARA 858
L+ + + + + +F I P
Sbjct: 365 VLE--------PAEYRKMF---DRLS----VFPP-----SAHI------------PTILL 392
Query: 859 SMIWIIGEYAERIDNADELLESFL 882
S+IW ++ + ++L + L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSL 416
Score = 63.7 bits (154), Expect = 2e-10
Identities = 67/419 (15%), Positives = 128/419 (30%), Gaps = 101/419 (24%)
Query: 147 KITEYLCEPLRKCL--KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNP 204
I + KD + + + ++ I G +L L
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSG-TLRLFWTLLSKQE 76
Query: 205 MVVANAVAAILLLPRKSY-WQRNLSSRKKQICWNLP------Y------LMNLSVIYPAW 251
+V V +L R +Y + L S K P Y L N + ++ +
Sbjct: 77 EMVQKFVEEVL---RINYKF---LMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 252 PLSTINPHTPLLKVLMKLMEMLPGEGDFV--------STLTKKLAPPLVTLLSSEPEVQY 303
+S + P+ L + L++L P + + + + + + ++ +
Sbjct: 130 NVSRLQPYLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 304 VALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSEL-- 361
+ L+N N P+ + ++ + DP + I+L +I L L
Sbjct: 187 LNLKNCN-----SPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIH-SIQAELRRLLK 239
Query: 362 -KEYATEVDV-DFVR--KAVRAIG-RCAIKVEQSAERCVSTLLDLIQTKYAERIDNADEL 416
K Y + V V+ KA A C I L+ T++ + D
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKI---------------LLTTRFKQVTDFLSAA 284
Query: 417 ------LESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQ----VLSL-ATQDS 465
L+ + LL + RP D V LS+ A
Sbjct: 285 TTTHISLDHHSMTLTPDEV---KSLLLKYLDC---RPQDLPREVLTTNPRRLSIIAESIR 338
Query: 466 DNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVS--------ALFPDVVN 516
D D W+ ++ LT ++ +S+ V + ++FP +
Sbjct: 339 DGLATWD----NWKHVNCDK-------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 80.8 bits (198), Expect = 5e-16
Identities = 36/255 (14%), Positives = 89/255 (34%), Gaps = 25/255 (9%)
Query: 522 NLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEY 581
+ K+L ++ + K P++A A+N + CED + IR A++ + +
Sbjct: 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPR 100
Query: 582 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKD-----------LLS 630
+ + L + L+ +D + ++ ++A+ G Q+ LS
Sbjct: 101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTL-GGLFSQILQGEDIVRERAIKFLS 159
Query: 631 DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC----TEWGQVFILDS 686
+ + E + S L ++ + + L+ T G+ +++
Sbjct: 160 TKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVEL 219
Query: 687 LSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLA 746
++ + + S + + +L + + L FV+ +++
Sbjct: 220 VAEQADLEQTFNPSDPDCVD---------RLLQCTRQAVPLFSKNVHSTRFVTYFCEQVL 270
Query: 747 PPLVTLLSSEPEVQY 761
P L TL + +
Sbjct: 271 PNLGTLTTPVEGLDI 285
Score = 60.3 bits (145), Expect = 2e-09
Identities = 42/318 (13%), Positives = 102/318 (32%), Gaps = 64/318 (20%)
Query: 62 NLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVF 121
+ K+L ++ + K P++A A +
Sbjct: 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQL----------------------------- 71
Query: 122 VKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI 181
CED + IR A++ + + + + L + L+ +D + ++ +
Sbjct: 72 -DLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM 130
Query: 182 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYL 241
+A+ G Q+ +V A+ + S++ K + +
Sbjct: 131 DAKGTL-GGLFSQIL----QGEDIVRERAIKFL-------------STKLKTLPDEVLTK 172
Query: 242 MNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEV 301
+I + + MK++ L S T LV L++ + ++
Sbjct: 173 EVEELILTESKKVLEDVTGEEFVLFMKILSGLK------SLQTVSGRQQLVELVAEQADL 226
Query: 302 QYVALRNINLIVQKRPDILKHEMKVF--------FVKY-NDPIYVKLEKLDIMIR-LASQ 351
+ + V + + + +F FV Y + + L L + L Q
Sbjct: 227 EQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQ 286
Query: 352 ANIAQVLSELKEYATEVD 369
+ ++L+E+ + +++
Sbjct: 287 LEVLKLLAEMSSFCGDME 304
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 78.5 bits (193), Expect = 4e-15
Identities = 81/499 (16%), Positives = 159/499 (31%), Gaps = 66/499 (13%)
Query: 15 IFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLM 74
+ L + ++K E+++ + + D+ A F +V + + + L
Sbjct: 92 LESLATVEETVVRDKAVESLRAISHEHS-PSDLEAHFVPLVKRLAGGDWFTSRTSACGLF 150
Query: 75 NYAKSHPDMAIMA-FSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVG----------VFVK 123
+ A+ A +F S + + L + + +F
Sbjct: 151 SVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210
Query: 124 DCEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY 179
D +R LAV I + + + LR+ +D+ VR A +L
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270
Query: 180 DINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLP 239
+ + ++L+ D V A A + + QI LP
Sbjct: 271 KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQI---LP 327
Query: 240 YLMNLSVIYPAWPLSTINPHTP--LLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS 297
+ L +S N H L V+M L +L + + L P + L
Sbjct: 328 CIKEL--------VSDANQHVKSALASVIMGLSPILGKD-----NTIEHLLPLFLAQLKD 374
Query: 298 E-PEVQYVALRNINLIVQ--KRPDILKHEMKVFFVKYNDPIY-VKLEKLDIMIRLASQAN 353
E PEV+ + N++ + + + + + D + V+L ++ M LA Q
Sbjct: 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434
Query: 354 IAQVLSELKEYATEV---DVDFVRK-AVRAIGRCAIKVEQSAERCVSTLLDLI-----QT 404
+ +L V +R+ A + + K E +T++ +
Sbjct: 435 VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF--GKEWAHATIIPKVLAMSGDP 492
Query: 405 KYAERI----------------DNADELLESFLEGFHDENTQVQLQLLTAIVKLFLK-RP 447
Y R+ +L + L D V+ + ++ K+
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552
Query: 448 TDTQELVQQVLSLATQDSD 466
+ Q V+ +L TQD D
Sbjct: 553 STLQSEVKPILEKLTQDQD 571
Score = 75.1 bits (184), Expect = 4e-14
Identities = 66/444 (14%), Positives = 141/444 (31%), Gaps = 51/444 (11%)
Query: 358 LSELKEYATEVDVDFVRKAVRAIGRCAIK--VEQSAERCVSTLLDLIQTKYAERI----- 410
++ L + DV +++ + A+ VE++ + L D I + +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQ 71
Query: 411 -----------DNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLS 459
+ LL E T V+ + + ++ + + E L
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 460 LATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQ 519
D R + + V +++ + L N
Sbjct: 132 KRLAGGDWFTSR------------TSACGLFSVCYPRVSSAVK-----AELRQYFRNLCS 174
Query: 520 TDNLELKKLVYLYLMNYAKSHPDMAIMA--VNTFVKDCEDSNPLIRALAVRTMGCI---- 573
D +++ L +AK + + + F D +R LAV I
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 574 RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSN 633
+ + + LR+ +D+ VR A +L + + ++L+ D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 634 PMVVANAVAALSEMNE---ASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNY 690
V A A + E E A ++ I +L++ N+ + ++ LS
Sbjct: 295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354
Query: 691 SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLV 750
KD+ + +L V L+ + L + E++ + L++ L P +V
Sbjct: 355 LGKDNTIEH-LLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-----IRQLSQSLLPAIV 408
Query: 751 TLLSS-EPEVQYVALRNINLIVQK 773
L + V+ + + L+ +
Sbjct: 409 ELAEDAKWRVRLAIIEYMPLLAGQ 432
Score = 72.7 bits (178), Expect = 3e-13
Identities = 86/624 (13%), Positives = 175/624 (28%), Gaps = 95/624 (15%)
Query: 156 LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAIL 215
L L++ED +R + ++ + L L D + D + +++A
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLA------- 67
Query: 216 LLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPG 275
L + L ++ G
Sbjct: 68 ----------------------------------------------LAEQLGTFTTLVGG 81
Query: 276 EGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDP 334
L PPL +L + E V+ A+ ++ I + V VK
Sbjct: 82 P-----EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVK---- 132
Query: 335 IYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERC 394
+L D S + V ++ V + + V ++A
Sbjct: 133 ---RLAGGDWFTSRTSACGLFSVCYPR--VSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 395 VSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELV 454
+ +++ + E++ F DE V+L + A V + ++L
Sbjct: 188 LGEFAKVLELDNVK-----SEIIPMFSNLASDEQDSVRLLAVEACVNIAQL--LPQEDLE 240
Query: 455 QQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDV 514
V+ Q +++ R R + + + T LV A + KD A
Sbjct: 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA--EVR 298
Query: 515 VNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG--- 571
+ L N S + + D+N +++ +
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQ------ILPCIKELVSDANQHVKSALASVIMGLS 352
Query: 572 -CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS 630
+ D E+L LKDE P VR + + ++ Q L + +L
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 631 DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNY 690
D+ V + + + E L L L
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGV-EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 691 SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLV 750
K+ +I ++ N ++ + + L E+ + TK + P ++
Sbjct: 472 FGKEWAH-ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----ITTKHMLPTVL 525
Query: 751 TLLS-SEPEVQYVALRNINLIVQK 773
+ V++ +++ I
Sbjct: 526 RMAGDPVANVRFNVAKSLQKIGPI 549
Score = 71.6 bits (175), Expect = 6e-13
Identities = 71/550 (12%), Positives = 160/550 (29%), Gaps = 75/550 (13%)
Query: 121 FVKDCEDSNPLIRALAVRTMG----CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 176
F+ D + +G + + L PL E+ VR A +
Sbjct: 53 FLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLR 112
Query: 177 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICW 236
+ ++ + F+ +K L +A + + R S+ K ++
Sbjct: 113 AISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC-----YPRVSSAVKAEL-- 165
Query: 237 NLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS 296
Y NL T L + ++L + + ++ P L S
Sbjct: 166 -RQYFRNLCSD------DTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLAS 213
Query: 297 SE-PEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 355
E V+ +A+ ++I L + A
Sbjct: 214 DEQDSVRLLAVEAC--------------------------------VNIAQLLPQEDLEA 241
Query: 356 QVLSELKEYATEVDVDFVRKAVRAIGRCA--IKVEQSAERCVSTLLDLIQTKYAERIDNA 413
V+ L++ A + + E + V +L++ AE A
Sbjct: 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 414 DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELV-----QQVLSLATQDSDNP 468
++ F E + + +++ I+ + +D + V ++ L+ +
Sbjct: 302 SHKVKEFCENLSADCREN--VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359
Query: 469 DLRDRGFIYWRLLSTGNT---FYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLEL 525
+ ++ L I+ +L V + + + +L P +V + +
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDAKWRV 418
Query: 526 KKLVYLYLMNYAK--SHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI----RVDKIT 579
+ + Y+ A + + D IR A + + +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 580 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 639
+ + D + R T C+ L ++ Q + + L + + D V N
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 640 AVAALSEMNE 649
+L ++
Sbjct: 539 VAKSLQKIGP 548
Score = 69.7 bits (170), Expect = 2e-12
Identities = 77/544 (14%), Positives = 166/544 (30%), Gaps = 75/544 (13%)
Query: 125 CEDSNPLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD 180
++R AV ++ I + + +++ + R +A + Y
Sbjct: 96 ATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155
Query: 181 INAQLVEDQGFLDQLKDLLSDSNPMV---VANAVAAILLLPRKSYWQRNLSSRKKQICWN 237
+ V+ + ++L SD PMV A+ + + + +
Sbjct: 156 RVSSAVKAE-LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI---------- 204
Query: 238 LPYLMNLSVIYPAWPLSTINPHTPLL--KVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL 295
+P NL S LL + + + ++LP E L + P L
Sbjct: 205 IPMFSNL--------ASDEQDSVRLLAVEACVNIAQLLPQED-----LEALVMPTLRQAA 251
Query: 296 SSE-PEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKL-DIMIRLASQAN 353
+ V+Y+ + + + V P + L K + +R A+
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLV-------PAFQNLMKDCEAEVRAAASHK 304
Query: 354 IAQVLSELKEYATEVDVDFVRKAVRAIGRCA----IKVEQSAERCVSTLLDLIQTKYAER 409
+ + L E + + + I V+ + + L ++
Sbjct: 305 VKEFCENLSADCRENV--IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI- 361
Query: 410 IDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPD 469
+ LL FL DE +V+L +++ + + ++L Q +L + +++
Sbjct: 362 ----EHLLPLFLAQLKDECPEVRLNIISNLDCVN--EVIGIRQLSQSLLPAIVELAEDAK 415
Query: 470 LRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLV 529
R R ++ L+ + V L + + +++
Sbjct: 416 WRVR--------------LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAA 461
Query: 530 YLYLMNYAKSHPDMAIMA--VNTFVKDCEDSNPLIRALAVRTMG----CIRVDKITEYLC 583
L + A + + D N L R + + D T+++
Sbjct: 462 TSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML 521
Query: 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 643
+ + D VR A + K+ I L+ L D + V A A
Sbjct: 522 PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 581
Query: 644 LSEM 647
L+ +
Sbjct: 582 LTVL 585
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 78.7 bits (193), Expect = 5e-15
Identities = 76/537 (14%), Positives = 170/537 (31%), Gaps = 41/537 (7%)
Query: 372 FVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQV 431
+ K ++ + K+ A CV+ + ID+ +E+ DE +V
Sbjct: 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDS---FIENLFALAGDEEPEV 231
Query: 432 QLQLLTAIVKLFLKRPTDTQELVQQVL--SLATQDSDNPDLRDRGFIYWRLLSTGNTFYI 489
+ + A+V L R + ++ L + ++ +W L+
Sbjct: 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291
Query: 490 LL-----HLTRLVIASMTVGKDVSALFPDVVNCMQTDNLE-----LKKLVYLYLMNYAKS 539
+L L +++ M L V + L+K L A
Sbjct: 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV 351
Query: 540 HPDMAIMAVNTFVKDC-EDSNPLIR-----ALAVRTMGCIR-VDKITEYLCEPLRKCLKD 592
+ D + + +K+ +++ L GC++ + L L +CL D
Sbjct: 352 YRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD 411
Query: 593 EDPYVRKTAAVCVAKLYDINAQLVEDQ---GFLDQLKDLLSDSNPMVVANAVAALSEMNE 649
+ VR +++ D + +L + DSN V A +A + + E
Sbjct: 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
Query: 650 ASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLS--NYSPKDDREAQSICERITP 707
+ + L+ A ++ L+ A ++ + + D++ S + + P
Sbjct: 472 EACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 529
Query: 708 RLAHANAAVVLSAVKVLMKLME----MLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVA 763
L ++ K L L+E + + + V L+ +
Sbjct: 530 PLIQ-KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 588
Query: 764 LRNINLIVQKRPDILKHEMKVF--FVKYNDPIYVKLEKLDIMIRLASQANIAQVNYVVQE 821
+ D + + + + +L ++ L Q ++ V Q
Sbjct: 589 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 648
Query: 822 AIVVIKDIFRKYPNK----YETIISTLCENLDTLDEPEARASMIWIIGEYAERIDNA 874
+ ++ D+ + + L NL+ + + W IGE + ++
Sbjct: 649 SFALLGDLTKACFQHVKPCIADFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIE 704
Score = 59.4 bits (143), Expect = 4e-09
Identities = 98/627 (15%), Positives = 195/627 (31%), Gaps = 77/627 (12%)
Query: 79 SHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVR 138
+ AF S+ D+ PL + + F++ + S+P IR+ AV
Sbjct: 140 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM---IPKFLQFFKHSSPKIRSHAVA 196
Query: 139 TMGCIRVDK------ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ--G 190
+ + + + E L DE+P VRK + L ++ +
Sbjct: 197 CVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN 256
Query: 191 FLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPA 250
++ + D + V A L L + + L ++ L M S I
Sbjct: 257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDII 316
Query: 251 WPLSTI-------------NPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL-S 296
+ N L L + E L + P L LL
Sbjct: 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE------LLPHILPLLKELLFH 370
Query: 297 SEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 356
E V+ + + I + + + + L ++R + +++
Sbjct: 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELI----PHLIQCLSDKKALVRSITCWTLSR 426
Query: 357 VLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS-AERCVSTLLDLIQTKYAERIDNADE 415
+ + +++ + + + + + E S L + E +
Sbjct: 427 YAHWVVS---QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 483
Query: 416 LLESFLEGFHDENTQVQLQLLTAI------VKLFLKRPTDTQELVQQVLSLATQDSDNPD 469
+L++ + F + L L AI V L +P Q L+ ++ D
Sbjct: 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK 543
Query: 470 LRDRGFIYWRLLSTGNTFYILLHLTRLVIA-SMTVGKDVSALFPDVVNCMQTDNLELKKL 528
F +L L+ + A ++ VN +Q L L
Sbjct: 544 DL---------------FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK-TLAQAML 587
Query: 529 VYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRK 588
Y D I+A++ E I L R+ + + +
Sbjct: 588 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN-----------ILTLMYQ 636
Query: 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ--GFLDQLKDLLSDSNPMVVANAVAALSE 646
C++D+ P VR+++ + L Q V+ F+ L L+ V NA A+ E
Sbjct: 637 CMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE 696
Query: 647 MNEASTSGVALIEMNAQTINKLLTALN 673
+ + G+ + +++L+ +N
Sbjct: 697 I--SIQMGIEMQPYIPMVLHQLVEIIN 721
Score = 42.9 bits (100), Expect = 5e-04
Identities = 51/365 (13%), Positives = 111/365 (30%), Gaps = 41/365 (11%)
Query: 132 IRALAVRTMGCIR-VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ- 189
I L GC++ + L L +CL D+ VR +++ D
Sbjct: 380 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 439
Query: 190 --GFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVI 247
+ +L + DSN V A +A L ++ L Y+++ +
Sbjct: 440 LKPLMTELLKRILDSNKRVQEAACSAFATL---------EEEACTELVPYLAYILD--TL 488
Query: 248 YPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLV---TLLSSEPEVQYV 304
A+ L + L + + G + L PPL+ +L E + +
Sbjct: 489 VFAFSKYQHKNLLILYDAIGTLADSV-GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 547
Query: 305 ALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEY 364
L ++ + + + + + + L M+ A +
Sbjct: 548 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLA--QAMLNNAQPDQYEAPDKDFMIV 605
Query: 365 ATEV-----------------DVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYA 407
A ++ + + + + +V QS+ + L DL + +
Sbjct: 606 ALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS---FALLGDLTKACFQ 662
Query: 408 ERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDN 467
+ + + E V AI ++ ++ + Q + VL + +
Sbjct: 663 HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR 722
Query: 468 PDLRD 472
P+
Sbjct: 723 PNTPK 727
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 71.2 bits (175), Expect = 4e-14
Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 606
V ++K+ +D + +R A +G I ++ EPL K LKDED +VR+ AA +
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALG 75
Query: 607 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTIN 666
++ D A ++ L L D + V +A AL ++ + + +
Sbjct: 76 QIGDERA--------VEPLIKALKDEDGWVRQSAAVALGQIG------------DERAVE 115
Query: 667 KLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMK 726
L+ AL + + ++ +L D A E + L + V SA L +
Sbjct: 116 PLIKALKDEDWFVRIAAAFALGEI---GDERA---VEPLIKALKDEDGWVRQSAADALGE 169
Query: 727 LMEMLPGEGDFVSTLTKKLAPPLVTLL-SSEPEVQYVALR 765
+ G +++ + L + + VA+
Sbjct: 170 I-------GG------ERVRAAMEKLAETGTGFARKVAVN 196
Score = 63.9 bits (156), Expect = 1e-11
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 30/181 (16%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 606
AV +K +D + +R A +G I ++ E PL K LKDED +VR++AAV +
Sbjct: 51 AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIKALKDEDGWVRQSAAVALG 106
Query: 607 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTIN 666
++ D A ++ L L D + V A AL E+ + + +
Sbjct: 107 QIGDERA--------VEPLIKALKDEDWFVRIAAAFALGEIG------------DERAVE 146
Query: 667 KLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMK 726
L+ AL + W + D+L + + AV L
Sbjct: 147 PLIKALKDEDGWVRQSAADALGEI---GGERVR---AAMEKLAETGTGFARKVAVNYLET 200
Query: 727 L 727
Sbjct: 201 H 201
Score = 58.1 bits (141), Expect = 1e-09
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D + +R A +G I ++ E PL K LKDED +VR++AAV + ++ D A
Sbjct: 60 KDEDAWVRRAAADALGQIGDERAVE----PLIKALKDEDGWVRQSAAVALGQIGDERA-- 113
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
++ L L D + V A A+
Sbjct: 114 ------VEPLIKALKDEDWFVRIAAAFAL 136
Score = 56.2 bits (136), Expect = 5e-09
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D + +R A +G I ++ E PL K LKDED +VR AA + ++ D A
Sbjct: 91 KDEDGWVRQSAAVALGQIGDERAVE----PLIKALKDEDWFVRIAAAFALGEIGDERA-- 144
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
++ L L D + V +A A+
Sbjct: 145 ------VEPLIKALKDEDGWVRQSAADAL 167
Score = 56.2 bits (136), Expect = 6e-09
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 176
V +++K+ +D + +R A +G I ++ E PL K LKDED +VR+ AA +
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALG 75
Query: 177 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
++ D A ++ L L D + V +A A+
Sbjct: 76 QIGDERA--------VEPLIKALKDEDGWVRQSAAVAL 105
Score = 53.1 bits (128), Expect = 6e-08
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D + +R A +G I ++ E PL K LKDED +VR++AA + ++
Sbjct: 122 KDEDWFVRIAAAFALGEIGDERAVE----PLIKALKDEDGWVRQSAADALGEI------- 170
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
+ ++ L AV +
Sbjct: 171 -GGERVRAAMEKLAETGTGFARKVAVNYL 198
Score = 36.6 bits (85), Expect = 0.017
Identities = 32/174 (18%), Positives = 53/174 (30%), Gaps = 43/174 (24%)
Query: 593 EDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAST 652
P K AA L D ++ L D + V A AL ++
Sbjct: 3 SHPQFEKAAA-----------PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---- 47
Query: 653 SGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHA 712
+ + + L+ AL + W + D+L + E + L
Sbjct: 48 --------DERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP------LIKALKDE 93
Query: 713 NAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALR 765
+ V SA L ++ GD ++ PL+ L E V+ A
Sbjct: 94 DGWVRQSAAVALGQI-------GD------ERAVEPLIKALKDEDWFVRIAAAF 134
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 71.7 bits (175), Expect = 7e-14
Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 26/237 (10%)
Query: 414 DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDR 473
+ +L+ +E D+ V ++ I+ + R + +++++ SL S+ L
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK-KSEAIPLTQE 89
Query: 474 GFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYL 533
I ++ + V ++ P + + + + K V L
Sbjct: 90 ---------------IAKAFGQMAKEK---PELVKSMIPVLFANYRIGDEKTKINVSYAL 131
Query: 534 MNYAKSHPDMAIMAVNTFVKDCEDSNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCL 590
AK++P + V F+ N + + MG + +L + L
Sbjct: 132 EEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-PRIINLL 190
Query: 591 KDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM 647
D D VR +A + L +N +L + + + + L+D++ +V +S +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRK---VVIKRLEELNDTSSLVNKTVKEGISRL 244
Score = 63.6 bits (154), Expect = 3e-11
Identities = 36/262 (13%), Positives = 94/262 (35%), Gaps = 26/262 (9%)
Query: 590 LKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649
+++E+ +R+ A L I D+ L +L +LL D VV NA++ + + +
Sbjct: 3 MEEEEFDIREALAN-GEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 650 ASTSGVALIEMNAQTINKLLTALNECT-EWGQVFILDSLSNYSPKDDREAQSICERITPR 708
+ KL + L + I + + + +S+ +
Sbjct: 62 TREDLY------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFAN 115
Query: 709 LAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNIN 768
+ ++ L ++ + P ++++ + L S E + AL I
Sbjct: 116 YRIGDEKTKINVSYALEEIAKANP---MLMASIVRDFMSMLS---SKNREDKLTALNFIE 169
Query: 769 LIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRL-ASQA--NIAQVNYVVQEAIV- 824
+ + + + +D D ++R A +A ++A +N +++ ++
Sbjct: 170 AMGENSFKYVNPFLPRIINLLHDG--------DEIVRASAVEALVHLATLNDKLRKVVIK 221
Query: 825 VIKDIFRKYPNKYETIISTLCE 846
++++ +T+ +
Sbjct: 222 RLEELNDTSSLVNKTVKEGISR 243
Score = 50.9 bits (121), Expect = 6e-07
Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 26/254 (10%)
Query: 160 LKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPR 219
+++E+ +R+ A L I D+ L +L +LL D VV NA++ I+++ +
Sbjct: 3 MEEEEFDIREALAN-GEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 220 KS--YWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHT--PLLKVLMKLM----- 270
++ L + + + + ++ P ++ VL
Sbjct: 62 TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDE 121
Query: 271 -----------EMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDI 319
E+ ++++ + L S E + AL I + +
Sbjct: 122 KTKINVSYALEEIAKANPMLMASIVRDFMSMLS---SKNREDKLTALNFIEAMGENSFKY 178
Query: 320 LKHEMKVFFVKYNDP-IYVKLEKLDIMIRLASQA-NIAQVLSELKEYATEVDVDFVRKAV 377
+ + +D V+ ++ ++ LA+ + +V+ + E + +
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVK 238
Query: 378 RAIGRCAIKVEQSA 391
I R + S+
Sbjct: 239 EGISRLLLLEGHSS 252
Score = 44.3 bits (104), Expect = 8e-05
Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 36/212 (16%)
Query: 15 IFELKGELNSDKKEKKREAVKKVIASMTVG--KDVSALFPDVVNCMQTDNLELKKLVYLY 72
+ +L L + + + K M + V ++ P + + + + K V
Sbjct: 71 LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYA 130
Query: 73 LMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLI 132
L AK++P + F + + L
Sbjct: 131 LEEIAKANPMLMASIVRDFMS---------------------------MLSSKNREDKLT 163
Query: 133 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFL 192
+ MG + +L + L D D VR +A + L +N +L + +
Sbjct: 164 ALNFIEAMGENSFKYVNPFL-PRIINLLHDGDEIVRASAVEALVHLATLNDKLRK---VV 219
Query: 193 DQLKDLLSDSNPMV---VANAVAAILLLPRKS 221
+ + L+D++ +V V ++ +LLL S
Sbjct: 220 IKRLEELNDTSSLVNKTVKEGISRLLLLEGHS 251
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 70.0 bits (172), Expect = 8e-14
Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 606
V ++K+ +D + +R A +G I ++ EPL K LKDED +VR+ AA +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALG 70
Query: 607 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTIN 666
++ D A ++ L L D + V +A AL ++ + + +
Sbjct: 71 QIGDERA--------VEPLIKALKDEDGWVRQSAAVALGQIG------------DERAVE 110
Query: 667 KLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMK 726
L+ AL + + ++ +L D A E + L + V SA L +
Sbjct: 111 PLIKALKDEDWFVRIAAAFALGEI---GDERA---VEPLIKALKDEDGWVRQSAADALGE 164
Query: 727 LMEMLPGEGDFVSTLTKKLAPPLVTLL-SSEPEVQYVALR 765
+ G +++ + L + + VA+
Sbjct: 165 I-------GG------ERVRAAMEKLAETGTGFARKVAVN 191
Score = 57.3 bits (139), Expect = 2e-09
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D + +R A +G I ++ E PL K LKDED +VR++AAV + ++ D A
Sbjct: 55 KDEDAWVRRAAADALGQIGDERAVE----PLIKALKDEDGWVRQSAAVALGQIGDERA-- 108
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAA 213
++ L L D + V A A
Sbjct: 109 ------VEPLIKALKDEDWFVRIAAAFA 130
Score = 56.2 bits (136), Expect = 5e-09
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 176
V +++K+ +D + +R A +G I ++ E PL K LKDED +VR+ AA +
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALG 70
Query: 177 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
++ D A ++ L L D + V +A A+
Sbjct: 71 QIGDERA--------VEPLIKALKDEDGWVRQSAAVAL 100
Score = 56.2 bits (136), Expect = 5e-09
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 606
AV +K +D + +R A +G I ++ E PL K LKDED +VR++AA +
Sbjct: 108 AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVE----PLIKALKDEDGWVRQSAADALG 163
Query: 607 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS 651
++ + ++ L AV L
Sbjct: 164 EI--------GGERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
Score = 55.4 bits (134), Expect = 1e-08
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D + +R A +G I ++ E PL K LKDED +VR AA + ++ D A
Sbjct: 86 KDEDGWVRQSAAVALGQIGDERAVE----PLIKALKDEDWFVRIAAAFALGEIGDERA-- 139
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
++ L L D + V +A A+
Sbjct: 140 ------VEPLIKALKDEDGWVRQSAADAL 162
Score = 53.1 bits (128), Expect = 6e-08
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D + +R A +G I ++ E PL K LKDED +VR++AA + ++
Sbjct: 117 KDEDWFVRIAAAFALGEIGDERAVE----PLIKALKDEDGWVRQSAADALGEI------- 165
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
+ ++ L AV +
Sbjct: 166 -GGERVRAAMEKLAETGTGFARKVAVNYL 193
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 74.3 bits (182), Expect = 1e-13
Identities = 93/616 (15%), Positives = 204/616 (33%), Gaps = 107/616 (17%)
Query: 95 KSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCE 154
+++ + + + IP S+ V+ + + +++ V + ++
Sbjct: 94 RAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIP 153
Query: 155 PLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAV 211
L K L DED V AAV V +L ++ + + + ++N + A
Sbjct: 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213
Query: 212 AAILLLPRKSYWQRNLSSR---KKQI--CWNLPYLMNL------SVIYPA-WPLSTINPH 259
+ L NLS I +P L+N+ SV++ A L + H
Sbjct: 214 SGTL---------HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264
Query: 260 TPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVA---LRNINLIVQK 315
K+ ++L L +V LL+ + + L+ + Q+
Sbjct: 265 QEGAKMAVRLAGGL---------------QKMVALLNKTNVKFLAITTDCLQILAYGNQE 309
Query: 316 RPD-ILKHEMKVFFVK--YNDPIYVKLEKLDIMIRLAS----------QANIAQVLSELK 362
IL V L ++++ S +A Q L
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH- 368
Query: 363 EYATEVDVDFVRKAVRAIGRCAIKVEQSA--ERCVSTLLDLIQTKYAERIDNADELLESF 420
T+ V+ + + + + E + TL+ L+ + + A +L +
Sbjct: 369 --LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426
Query: 421 LEGFHDENTQ--VQLQLLTAIVKLFLKRPTDTQELVQQVLS----LATQDSDNPDLRDRG 474
+ +N Q+ + A+V+ + R D +++ + + L ++ D ++
Sbjct: 427 TCN-NYKNKMMVCQVGGIEALVRT-VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484
Query: 475 F------IYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALF------PDVVNCMQTDN 522
+ +LL + + L+ T +I ++ + A P +V + +
Sbjct: 485 RLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 543
Query: 523 LELKKLVYLYLMNYAKSHP-------DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV 575
+ ++ + + A++ +D + + +R + I
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN------RIVIRGLNTI-- 595
Query: 576 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL--YDINAQLVEDQGFLDQLKDLLSDSN 633
+ L +++ AA + +L A+ +E +G L +LL N
Sbjct: 596 --------PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 647
Query: 634 PMVVANAVAALSEMNE 649
V A A L M+E
Sbjct: 648 EGVATYAAAVLFRMSE 663
Score = 49.3 bits (117), Expect = 5e-06
Identities = 52/374 (13%), Positives = 112/374 (29%), Gaps = 39/374 (10%)
Query: 431 VQLQLLTAIVKLFLKRPTDT--QELVQQVLSLATQDSDNPD-LRDRGFIY--WRLLSTGN 485
Q+++AIV+ ++ D L + + + G I +L +
Sbjct: 189 RSPQMVSAIVRT-MQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV 247
Query: 486 T---FYILLHLTRLVIASMTVGKDVSAL--FPDVVNCMQTDNLELKKLVYLYLMNYAKSH 540
F+ + L L++ V +V + N++ + L A +
Sbjct: 248 DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307
Query: 541 PDMAIMAVNT--------FVKDCEDSNPLIRALAVRTMGCIRVD---KITEY-LCEPLRK 588
+ ++ + + ++ L V + + I E + L
Sbjct: 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367
Query: 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648
L D + + + L D + +G L L LL + VV A LS +
Sbjct: 368 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427
Query: 649 EASTSGVALIEMNAQTINKLLTALNECTEWGQV-----FILDSLSNYSPKDDREAQSICE 703
+ ++ I L+ + + + L L++ + ++
Sbjct: 428 CNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486
Query: 704 -----RITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLA-PPLVTLLSS-E 756
+ L + ++ A L++ L + L ++ A P LV LL
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRN---LALCPANHAPLREQGAIPRLVQLLVRAH 543
Query: 757 PEVQYVALRNINLI 770
+ Q
Sbjct: 544 QDTQRRTSMGGTQQ 557
Score = 48.5 bits (115), Expect = 1e-05
Identities = 80/541 (14%), Positives = 160/541 (29%), Gaps = 76/541 (14%)
Query: 296 SSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKL--------DIMIR 347
++ + QY R + P+ L M++ +++ +++L ++
Sbjct: 78 VADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVN 137
Query: 348 LASQANIAQV----LSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-----CVSTL 398
L + + A++ + EL + + D V KA + + + K VS +
Sbjct: 138 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 197
Query: 399 LDLIQ-TKYAERIDNADELLESFLEGFHDENTQ--VQLQLLTAIVKLFLKRPTDTQELVQ 455
+ +Q T E L + H E + + A+V +
Sbjct: 198 VRTMQNTNDVETARCTSGTLHNLSH--HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255
Query: 456 QVLS-LATQDSDNPDL-RDRGFI--YWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALF 511
L L R G + LL+ N L +T + + G S L
Sbjct: 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--KFLAITTDCLQILAYGNQESKLI 313
Query: 512 -------PDVVNCMQTDNLELKKLVYLYLMNYAKSHPD--MAIM---AVNTFVKDCEDSN 559
+VN M+T E ++ AI+ + D +
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 560 PLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL---YDIN 612
+ + T+ + + E L L + L +D V AA ++ L N
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433
Query: 613 AQLVEDQGFLDQLKDLL--SDSNPMVVANAVAALSEM--NEASTSGVALIEMNAQTINKL 668
+V G ++ L + + + A+ AL + + +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 669 LTALNECTEWGQVFILDSLSNYSPKDDREAQSICER-ITPRL------------AHANAA 715
+ L+ + W + L + E+ PRL +
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 716 VVLSAVKVLMKLMEMLPGEGDFVSTLTKKLA-----------PPLVTLL-SSEPEVQYVA 763
+++ E++ + L + + P V LL S +Q VA
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 613
Query: 764 L 764
Sbjct: 614 A 614
Score = 44.6 bits (105), Expect = 1e-04
Identities = 59/361 (16%), Positives = 103/361 (28%), Gaps = 52/361 (14%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 213
+ L L D + + + L D + +G L L LL + VV A
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422
Query: 214 IL------------------------LLPRKSYWQ----------RNLSSRKKQICWNLP 239
+ + R + R+L+SR +
Sbjct: 423 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482
Query: 240 YLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLA-PPLVTLLSS- 297
+ + L H PL+K + L+ L + L ++ A P LV LL
Sbjct: 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 542
Query: 298 EPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 357
+ Q Q+ + ++ E V I + I+IR N +
Sbjct: 543 HQDTQRRTSMGGT--QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR---GLNTIPL 597
Query: 358 LSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA----ERCVSTLLDLIQTKYAERIDNA 413
+L + R A + A E + E + L +L+ ++ A
Sbjct: 598 FVQL---LYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654
Query: 414 DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDR 473
+L E D+ + +L + L R L L P +
Sbjct: 655 AAVLFRMSE---DKPQDYKKRLSVELTSS-LFRTEPMTWNETGDLGLDIGAQGEPLGYRQ 710
Query: 474 G 474
Sbjct: 711 D 711
Score = 40.4 bits (94), Expect = 0.003
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 605 VAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQT 664
V L + + +L LL+D + +VV A + ++++ S A++ + Q
Sbjct: 135 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQM 193
Query: 665 INKLLTALNECTEWGQ----VFILDSLS-NYSPKDD-REAQSICERITPRLAHANAAVVL 718
++ ++ + + L +LS + ++ I + L +V+
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGI-PALVNMLGSPVDSVLF 252
Query: 719 SAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVA---LRNI 767
A+ L L+ G V +V LL+ + + L+ +
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLA--GGLQKMVALLNKTNVKFLAITTDCLQIL 303
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.8 bits (178), Expect = 4e-13
Identities = 83/557 (14%), Positives = 163/557 (29%), Gaps = 160/557 (28%)
Query: 278 DFVSTL---TKKLA---PPLVTLLSSEPE-----VQYVALRNINLIVQKRPDILKHEMKV 326
F L T+ A P ++ E + YV+ V + +L +
Sbjct: 36 QFNKILPEPTEGFAADDEP-----TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 327 F---FVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRC 383
F +++ ND I+ KL + + + +K Y A R
Sbjct: 91 FENCYLEGND-IHALAAKLLQ----ENDTTLVKTKELIKNYI---------TARIMAKRP 136
Query: 384 AIKVEQSA----------------------ERCVSTLLDLIQTKY----AERIDNADELL 417
K SA + L DL QT Y + I + E L
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETL 195
Query: 418 ESFLEGFHDENTQVQ--LQLLTAIVKLFLKRPT---DTQELVQQVLSLATQDSDNPDLRD 472
+ D L +L +L+ P+ D L+ +S P
Sbjct: 196 SELIRTTLDAEKVFTQGLNILE-----WLENPSNTPDKDYLLSIPISC-------P---- 239
Query: 473 RGFIYWRLLSTGNTFYILLH--------LTRLVIASMTVGKD-VSALFPDVVNCMQT-DN 522
I ++ + + + L + + + V+A+ + ++
Sbjct: 240 --LIG--VIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 523 LELKKLVYLYLMNYA--KSHPDMAIMAVNTFVKDCEDSN-----PLIRALAVRTMGCIRV 575
K + L+ + +++P+ ++ + ++D ++N P+ L++ +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPP--SILEDSLENNEGVPSPM---LSIS--NLTQ- 346
Query: 576 DKITEYLCEPLRKCLKDEDP-YV-----RKTAAVC--VAKLYDINAQL--VEDQGFLDQL 625
+++ +Y+ L + K V LY +N L + LDQ
Sbjct: 347 EQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 626 KDLLSDSNPMVVAN--AVAA-----LSEMNEASTSGVALIEMNAQTINKLLTALNECTEW 678
+ S+ VA+ L + A LI + N A +
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHL--LVPA----SDLINKDLVKNNVSFNA----KDI 455
Query: 679 G-QVFILDSLSNYSPKDDREAQSICERITPRLAHA--------NAAVVLSAVKVLMKLME 729
V Y D + + + I+ R+ A +L +
Sbjct: 456 QIPV--------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL----D 503
Query: 730 MLPGEGDFVSTLTKKLA 746
PG + LT +
Sbjct: 504 FGPGGASGLGVLTHRNK 520
Score = 60.1 bits (145), Expect = 3e-09
Identities = 75/441 (17%), Positives = 140/441 (31%), Gaps = 129/441 (29%)
Query: 382 RCAIKV--------EQSAERCVSTLLDLIQTKYAERIDNAD----ELLESFLEGF----H 425
+ V Q E+ L + +A D+ EL+ FL G+
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPE-PTEGFAA--DDEPTTPAELVGKFL-GYVSSLV 72
Query: 426 DENTQVQL-QLLTAIVKLF----LKRPTDTQELVQQVLSLATQDSDNPDLRDRGFI--YW 478
+ + Q Q+L + F L D L ++L Q++D ++ + I Y
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYL-EGNDIHALAAKLL----QENDTTLVKTKELIKNYI 127
Query: 479 RLLSTGNTFYILLHLTRLVIASMTVGKDVSALFP---DVVNCMQTDNLELKKLVYLYLMN 535
+ + L A + A+F + + + EL+ L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE----ELRDL------- 176
Query: 536 YAKSHP------DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKC 589
Y H + ++ ++ D+ + T G + I E+L P
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF------TQGL---N-ILEWLENPSNT- 225
Query: 590 LKDEDPYVRKTAAV-----CVAKL--YDINAQL--VEDQGFLDQLKDLLSDSNPMVVANA 640
D+D Y+ + + V +L Y + A+L LK S +V A A
Sbjct: 226 -PDKD-YLL-SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 641 VAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQS 700
+A + S + + + K +T L F + R
Sbjct: 283 IA-------ETDSWESFFV-SVR---KAITVL---------FFIGV---------R---- 309
Query: 701 ICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGD-----FVSTLTKKLAPPLVTLLSS 755
C P + +++ +++ EG +S LT++ V +S
Sbjct: 310 -CYEAYPNTS-LPPSILEDSLEN---------NEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 756 E-PEVQ--YVALRN--INLIV 771
P + ++L N NL+V
Sbjct: 359 HLPAGKQVEISLVNGAKNLVV 379
Score = 48.5 bits (115), Expect = 1e-05
Identities = 93/570 (16%), Positives = 168/570 (29%), Gaps = 192/570 (33%)
Query: 91 FFYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSNPLIRALAVRTMG----CIRVD 146
F + F + +P F D E + P L + +G +
Sbjct: 28 FIASQLQEQFN-----KILP-----EPTEGFAADDEPTTPA--ELVGKFLGYVSSLVEPS 75
Query: 147 KITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPM 205
K+ ++ + L CL + E+ Y+ DI+A + L Q D
Sbjct: 76 KVGQF-DQVLNLCLTEFENCYLEGN---------DIHALAAK----LLQENDTTLVKTKE 121
Query: 206 VVANAVAAILLLPR------KSYWQRNLSSRKKQIC-------WNLPYLMNLSVIYPAWP 252
++ N + A ++ R S R + Q+ Y L +Y
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY---- 177
Query: 253 LSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLI 312
+ L+ D + + L+ L+ + + + V + +N++
Sbjct: 178 ----QTYHVLVG-------------DLIKFSAETLSE----LIRTTLDAEKVFTQGLNIL 216
Query: 313 -----VQKRPDILKHEMKVFFVKYNDPIYVKLEKLDI-MIRLASQANIAQVL----SELK 362
PD + + PI L I +I+LA A++L EL+
Sbjct: 217 EWLENPSNTPDKD------YLLSI--PISCPL----IGVIQLAHYVVTAKLLGFTPGELR 264
Query: 363 EY---ATEV--DV-------------DFVRKAVRA------IG-RCAIKVEQSAERCVST 397
Y AT + F +A IG RC A S
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-----YEAYPNTSL 319
Query: 398 LLDLIQTKYAERIDN--------------ADELLESFLEGF--H-DENTQVQLQLL---T 437
+++ + ++N E ++ ++ H QV++ L+
Sbjct: 320 PPSILE----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 438 AIVKLFLKRPTDTQELVQQVLSL----ATQDSDN---PDLRDRGF-IYWRLLSTGNTFYI 489
+V + P Q L L+L A D P +R R L + F
Sbjct: 376 NLV---VSGP--PQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASPF-- 427
Query: 490 LLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAV- 548
H S L + + D L + + + D+ I V
Sbjct: 428 --H---------------SHLLVPASDLINKD-LVKNNVSF--------NAKDIQI-PVY 460
Query: 549 NTFV-KD-CEDSNPLIRALAVRTMGCIRVD 576
+TF D S + + V + + V
Sbjct: 461 DTFDGSDLRVLSGSISERI-VDCIIRLPVK 489
Score = 40.0 bits (93), Expect = 0.004
Identities = 40/214 (18%), Positives = 73/214 (34%), Gaps = 53/214 (24%)
Query: 606 AKLYDINA-QLVEDQGFLDQL----KDLLSDSNPMVVANAVAA----LSEMNEASTSG-- 654
+ A QL E F L + +D P A V +S + E S G
Sbjct: 24 TASF-FIASQLQEQ--FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 655 -----VALIE-----MNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICER 704
+ L E + I+ L L + + V + + NY A+ + +R
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-----ITARIMAKR 135
Query: 705 ITPRLAHANAAVVLSAVKVLMKLMEMLPGEGD-----------------FVSTLTKKLAP 747
P +N+A+ + + +L+ + G+G+ V L K A
Sbjct: 136 --PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 748 PLVTLLSSEPEVQYVALRNINLI-----VQKRPD 776
L L+ + + + V + +N++ PD
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Score = 38.1 bits (88), Expect = 0.014
Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 77/205 (37%)
Query: 736 DFVSTL---TKKLA---PPLVTLLSSEPE-----VQYVALRNINLIVQKRPDILKHEMKV 784
F L T+ A P ++ E + YV+ V + +L +
Sbjct: 36 QFNKILPEPTEGFAADDEP-----TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 785 F---FVKYND----------PIYVKLEKLDIMIR--------------------L--ASQ 809
F +++ ND L K +I+ L A
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 810 ANIAQVNYVV---Q--------EAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEARA 858
AQ+ + Q E ++D+++ Y +I E L L A
Sbjct: 151 EGNAQL-VAIFGGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 859 SMIWIIGEYAERIDNADELLESFLE 883
+ + + ++ + +LE
Sbjct: 206 EKV-----FTQGLN-----ILEWLE 220
Score = 32.3 bits (73), Expect = 0.94
Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 76/234 (32%)
Query: 289 PPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVF--------FVKYNDPIYVKLE 340
P +T+ + + + +I + D K+F +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK----G 1724
Query: 341 KLD--------IMIRLASQANIAQVLSE--------------LKEYA----------TE- 367
L + L +A + L L EYA E
Sbjct: 1725 LLSATQFTQPALT--LMEKA-AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 368 -VDVDFVR-----KAV--RAIGR-----CAIKVEQSAERCVSTLLDLIQTKYAERIDNAD 414
V+V F R AV +GR AI + A L + + +R
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR---TG 1838
Query: 415 ELLESFLEGFHDENTQV-------QLQLLTAIVKLFLK-RPTDTQELVQQVLSL 460
L+E + ++ EN Q L +T ++ F+K + D EL Q+ LSL
Sbjct: 1839 WLVE--IVNYNVENQQYVAAGDLRALDTVTNVLN-FIKLQKIDIIEL-QKSLSL 1888
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 63.9 bits (156), Expect = 2e-12
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 556 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 615
D N +R + + + EPL + L +ED +R AA + D A
Sbjct: 22 ADENKWVRRDVSTALSRMGDEAF-----EPLLESLSNEDWRIRGAAAWIIGNFQDERA-- 74
Query: 616 VEDQGFLDQLKDLLSDSNPMVVANAVAALSEM 647
++ L LL D + V + A +L ++
Sbjct: 75 ------VEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 59.2 bits (144), Expect = 1e-10
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
D N +R + + + EPL + L +ED +R AA + D A
Sbjct: 22 ADENKWVRRDVSTALSRMGDEAF-----EPLLESLSNEDWRIRGAAAWIIGNFQDERA-- 74
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAA 213
++ L LL D + V + A +
Sbjct: 75 ------VEPLIKLLEDDSGFVRSGAARS 96
Score = 57.7 bits (140), Expect = 4e-10
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 556 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 615
+ + IR A +G + ++ E PL K L+D+ +VR AA + ++
Sbjct: 52 SNEDWRIRGAAAWIIGNFQDERAVE----PLIKLLEDDSGFVRSGAARSLEQIGGERV-- 105
Query: 616 VEDQGFLDQLKDLLSDSNPMVVANAVAAL 644
++ L AV L
Sbjct: 106 ------RAAMEKLAETGTGFARKVAVNYL 128
Score = 55.4 bits (134), Expect = 2e-09
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+ + IR A +G + ++ E PL K L+D+ +VR AA + ++
Sbjct: 52 SNEDWRIRGAAAWIIGNFQDERAVE----PLIKLLEDDSGFVRSGAARSLEQIGGERV-- 105
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
++ L AV +
Sbjct: 106 ------RAAMEKLAETGTGFARKVAVNYL 128
Score = 48.1 bits (115), Expect = 9e-07
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 27/141 (19%)
Query: 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 643
P + DE+ +VR+ + L + + E L + LS+ + + A
Sbjct: 15 VPRGSHMADENKWVRRDVSTA---LSRMGDEAFEP------LLESLSNEDWRIRGAAAWI 65
Query: 644 LSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICE 703
+ + + + L+ L + + + + SL +
Sbjct: 66 IGNFQ------------DERAVEPLIKLLEDDSGFVRSGAARSLEQI---GGERVR---A 107
Query: 704 RITPRLAHANAAVVLSAVKVL 724
+ AV L
Sbjct: 108 AMEKLAETGTGFARKVAVNYL 128
Score = 40.4 bits (95), Expect = 4e-04
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 213
P + DE+ +VR+ + L + + E L + LS+ + + A
Sbjct: 15 VPRGSHMADENKWVRRDVSTA---LSRMGDEAFEP------LLESLSNEDWRIRGAAAWI 65
Score = 39.6 bits (93), Expect = 6e-04
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAA 602
AV +K ED + +R+ A R++ I +++ + K + + RK A
Sbjct: 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGGERVR----AAMEKLAETGTGFARKVAV 125
Score = 36.9 bits (86), Expect = 0.006
Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 33/145 (22%)
Query: 622 LDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQV 681
L ++D N V + ALS M + + LL +L+ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-------------FEPLLESLSNEDWRIRG 60
Query: 682 FILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTL 741
+ N+ D A E + L + V A + L ++ G
Sbjct: 61 AAAWIIGNFQ---DERA---VEPLIKLLEDDSGFVRSGAARSLEQI-------GG----- 102
Query: 742 TKKLAPPLVTLL-SSEPEVQYVALR 765
+++ + L + + VA+
Sbjct: 103 -ERVRAAMEKLAETGTGFARKVAVN 126
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 68.3 bits (167), Expect = 5e-12
Identities = 82/550 (14%), Positives = 178/550 (32%), Gaps = 97/550 (17%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 210
L K L DED V AAV V +L ++ + + + ++N + A
Sbjct: 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 211 VAAILLLPRKSYWQRNLSSRKKQICW-----NLPYLMNL------SVIYPA-WPLSTINP 258
A L NLS ++ + +P L+ + SV++ A L +
Sbjct: 80 TAGTL---------HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 259 HTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVA---LRNINLIVQ 314
H K+ ++L L +V LL+ + + L+ + Q
Sbjct: 131 HQEGAKMAVRLAGGLQ---------------KMVALLNKTNVKFLAITTDCLQILAYGNQ 175
Query: 315 KRPDILKHE--MK--VFFVKYNDPIYVKLEKLDIMIRLAS---------QANIAQVLSEL 361
+ I+ + V ++ + ++ L+ +A Q L
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235
Query: 362 KEYATEVDVDFVRKAVRAIGRCAIKVEQSAER--CVSTLLDLIQTKYAERIDNADELLES 419
T+ V+ + + + + + TL+ L+ + + A +L +
Sbjct: 236 ---LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 420 FLEGFHDENTQ--VQLQLLTAIVKLFLKRPTDTQELVQQVLS----LATQDSDNPDLRDR 473
+ +N Q+ + A+V+ + R D +++ + + L ++ + ++
Sbjct: 293 LTCN-NYKNKMMVCQVGGIEALVRT-VLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 350
Query: 474 GF------IYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALF------PDVVNCMQTD 521
+ +LL + + L+ T +I ++ + A P +V +
Sbjct: 351 VRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409
Query: 522 NLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCED--SNPLIRALAVRTMGCIRVDKIT 579
+ + ++ + V + R +R + I
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI-VIRGLNTI------ 462
Query: 580 EYLCEPLRKCLKDEDPYVRKTAAVCVAKL--YDINAQLVEDQGFLDQLKDLLSDSNPMVV 637
+ L +++ AA + +L A+ +E +G L +LL N V
Sbjct: 463 ----PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 518
Query: 638 ANAVAALSEM 647
A A L M
Sbjct: 519 TYAAAVLFRM 528
Score = 50.9 bits (122), Expect = 1e-06
Identities = 67/534 (12%), Positives = 157/534 (29%), Gaps = 80/534 (14%)
Query: 289 PPLVTLLSSE-PEVQYVA---LRNINLIVQKRPDILKH----EMKVFFVKYNDPIYVKLE 340
P L LL+ E V A + ++ R I++ V ++ + +
Sbjct: 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 341 KLDIMIRLA-SQANIAQV-----LSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS---- 390
+ L+ + + + + L + + A+ + + E +
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 391 -AERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQ--VQLQLLTAIVKLFLKRP 447
+ ++ L+ + + + L+ G + E+ + A+V + ++
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLIILASGGPQALVNI-MRTY 197
Query: 448 TDT--QELVQQVLSLATQDSDN-PDLRDRGFI--YWRLLSTGNTFYILLHLTRLVIASMT 502
T +VL + + S N P + + G + L+ + L+ + +++
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNLS 255
Query: 503 VGKD----VSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD--MAIM---AVNTFVK 553
+ L +V + +D++ + L N ++ M + + V+
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Query: 554 DCEDSNP--LIRALAVRTMGCI----------RVDKITEYLCEPLRKCLKDEDPYVRKTA 601
+ I A+ + + + Y + K L + A
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
Query: 602 AVCV---AKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALI 658
V + L N + +QG + +L LL ++ ++ + I
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 659 EMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVL 718
AL+ + + L +
Sbjct: 436 VEGC------TGALHILARDVHN-----------RIVIRGLNTIPLFVQLLYSPIENIQR 478
Query: 719 SAVKVLMKLMEMLPGEGDFVSTLTKKLA-PPLVTLLSSE-PEVQYVA---LRNI 767
A VL +L + + + + + A PL LL S V A L +
Sbjct: 479 VAAGVLCELAQ----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 47.5 bits (113), Expect = 2e-05
Identities = 53/374 (14%), Positives = 112/374 (29%), Gaps = 39/374 (10%)
Query: 431 VQLQLLTAIVKLFLKRPTD--TQELVQQVLSLATQDSDNPD-LRDRGFIY--WRLLSTGN 485
Q+++AIV+ ++ D T L + + + G I ++L +
Sbjct: 56 RSPQMVSAIVRT-MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV 114
Query: 486 T---FYILLHLTRLVIASMTVGKDVSAL--FPDVVNCMQTDNLELKKLVYLYLMNYAKSH 540
FY + L L++ V +V + N++ + L A +
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174
Query: 541 PDMAIM-----AVNTFVKDCEDSNPL-IRALAVRTMGCIRVDK------ITEYLCEPLRK 588
+ ++ V + R + + V + + L
Sbjct: 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234
Query: 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMN 648
L D + + + L D + +G L L LL + VV A LS +
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 649 EASTSGVALIEMNAQTINKLLTALNECTEWGQV-----FILDSLSNYSPKDDREAQSICE 703
+ ++ I L+ + + + L L++ + + ++
Sbjct: 295 CNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353
Query: 704 -----RITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLA-PPLVTLLSSE- 756
+ L + ++ A + L+ L + L ++ A P LV LL
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKAT---VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410
Query: 757 PEVQYVALRNINLI 770
+ Q
Sbjct: 411 QDTQRRTSMGGTQQ 424
Score = 44.8 bits (106), Expect = 1e-04
Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 15/198 (7%)
Query: 584 EPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVA-N 639
L K L DED V AAV V +L ++ + + + ++N + A
Sbjct: 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 640 AVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ 699
L ++ +A+ + I L+ L + + + +L N +
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGG--IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137
Query: 700 SICE-----RITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS 754
++ ++ L N + L L + L LV ++
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII--LASGGPQALVNIMR 195
Query: 755 S--EPEVQYVALRNINLI 770
+ ++ + R + ++
Sbjct: 196 TYTYEKLLWTTSRVLKVL 213
Score = 38.2 bits (89), Expect = 0.013
Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 13/103 (12%)
Query: 128 SNPLIRALAVRTMGCI----------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCV-- 175
I A+ + + + Y + K L + A V +
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 381
Query: 176 -AKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217
L N + +QG + +L LL ++
Sbjct: 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 424
Score = 37.8 bits (88), Expect = 0.014
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 605 VAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQT 664
V L + + +L LL+D + +VV A + ++++ S A++ + Q
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQM 60
Query: 665 INKLLTALNECTEWGQ----VFILDSLS-NYSPKDD-REAQSICERITPRLAHANAAVVL 718
++ ++ + + L +LS + ++ I + L +V+
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI-PALVKMLGSPVDSVLF 119
Query: 719 SAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVA---LRNI 767
A+ L L+ G V +V LL+ + + L+ +
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLA--GGLQKMVALLNKTNVKFLAITTDCLQIL 170
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 67.7 bits (165), Expect = 9e-12
Identities = 85/601 (14%), Positives = 190/601 (31%), Gaps = 80/601 (13%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 210
L K L DED V AAV V +L ++ + + + ++N + A
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76
Query: 211 VAAILLLPRKSYWQRNLSSR---KKQI--CWNLPYLMNLSVIYPAWPLSTINPHTPLLKV 265
A L NLS I +P L+ + L + L
Sbjct: 77 TAGTL---------HNLSHHREGLLAIFKSGGIPALVKM--------LGSPVDSV-LFYA 118
Query: 266 LMKLMEMLPGEGDFVSTLTKKLA-PPLVTLLSSE-PEVQYVA---LRNINLIVQKRPDIL 320
+ L +L + + +V LL+ + + L+ + Q+ I+
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 321 KHE--MK--VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSE------LKEYATEVDV 370
+ V ++ + ++ L+ ++ + E L + T+
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 371 DFVRKAVRAIGRCA--IKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDEN 428
V+ + + + ++ E + TL+ L+ + + A +L + + +N
Sbjct: 239 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKN 297
Query: 429 TQVQLQL--LTAIVKLFLKRPTDTQELVQQVLS----LATQDSDNPDLRDRGFIY----- 477
+ Q+ + A+V+ + R D +++ + + L ++ + ++ ++
Sbjct: 298 KMMVCQVGGIEALVRT-VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 478 -WRLLSTGNTFYILLHLTRLVIASMTVGKDVSALF------PDVVNCMQTDNLELKKLVY 530
+LL + + L+ T +I ++ + A P +V + + + ++
Sbjct: 357 VVKLLHPPS-HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 415
Query: 531 LYLMNYAKSHPDMAIMAVNTFVKDCED--SNPLIRALAVRTMGCIRVDKITEYLCEPLRK 588
+ V + R +R + I +
Sbjct: 416 MGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI-VIRGLNTI----------PLFVQ 464
Query: 589 CLKDEDPYVRKTAAVCVAKL--YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSE 646
L +++ AA + +L A+ +E +G L +LL N V A A L
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 524
Query: 647 MNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERIT 706
M+E ++ + + L LD + P R+
Sbjct: 525 MSEDKPQDYK-KRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFH 583
Query: 707 P 707
Sbjct: 584 S 584
Score = 48.0 bits (114), Expect = 1e-05
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 13/181 (7%)
Query: 584 EPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVA-N 639
L K L DED V AAV V +L ++ + + + ++N + A
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76
Query: 640 AVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQ 699
L ++ +A+ + I L+ L + + + +L N +
Sbjct: 77 TAGTLHNLSHHREGLLAIFKSGG--IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 700 SICE-----RITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS 754
++ ++ L N + L L + L LV ++
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII--LASGGPQALVNIMR 192
Query: 755 S 755
+
Sbjct: 193 T 193
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/376 (12%), Positives = 110/376 (29%), Gaps = 43/376 (11%)
Query: 431 VQLQLLTAIVKLFLKRPTDT--QELVQQVLSLATQDSDNPDL-RDRGFIY--WRLLSTGN 485
Q+++AIV+ ++ D L + + G I ++L +
Sbjct: 53 RSPQMVSAIVRT-MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV 111
Query: 486 TFYILLHLTRLVIASMTVGKDVSALF-------PDVVNCMQTDNLELKKLVYLYLMNYAK 538
+L + ++ + ++ + + +V + N++ + L A
Sbjct: 112 DS--VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169
Query: 539 SHPDMAIM-----AVNTFVKDCEDSNPL-IRALAVRTMG-CIRVDKITEYLCE-----PL 586
+ + ++ V + R + + E L
Sbjct: 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 229
Query: 587 RKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSE 646
L D + + + L D + +G L L LL + VV A LS
Sbjct: 230 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 647 MNEASTSGVALIEMNAQTINKLLTALNECTEWGQV-----FILDSLSNYSPKDDREAQSI 701
+ + ++ I L+ + + + L L++ + + ++
Sbjct: 290 LTCNNYKNKMMV-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348
Query: 702 CE-----RITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLA-PPLVTLLSS 755
+ L + ++ A + L+ L + L ++ A P LV LL
Sbjct: 349 RLHYGLPVVVKLLHPPSHWPLIKAT---VGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405
Query: 756 -EPEVQYVALRNINLI 770
+ Q
Sbjct: 406 AHQDTQRRTSMGGTQQ 421
Score = 39.5 bits (92), Expect = 0.005
Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 14/170 (8%)
Query: 608 LYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINK 667
L + + +L LL+D + +VV A + ++++ S A++ + Q ++
Sbjct: 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSA 60
Query: 668 LLTALNECTEWGQ----VFILDSLS-NYSPKDD-REAQSICERITPRLAHANAAVVLSAV 721
++ + + L +LS + ++ I + L +V+ A+
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAI 119
Query: 722 KVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVA---LRNI 767
L L+ G V +V LL+ + + L+ +
Sbjct: 120 TTLHNLLLHQEGAKMAVRLA--GGLQKMVALLNKTNVKFLAITTDCLQIL 167
Score = 36.5 bits (84), Expect = 0.038
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 13/103 (12%)
Query: 128 SNPLIRALAVRTMGCI----------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAK 177
I A+ + + + Y + K L + A V + +
Sbjct: 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 378
Query: 178 L---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217
N + +QG + +L LL ++
Sbjct: 379 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 421
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 65.6 bits (160), Expect = 1e-11
Identities = 30/244 (12%), Positives = 68/244 (27%), Gaps = 49/244 (20%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 606
+ + +D N L R + R + + D++ R A +
Sbjct: 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAVR----LAIEFCSDKNYIRRDIGAFILG 79
Query: 607 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGV----------- 655
++ L+ + L+D + V A A+ + ++ + +
Sbjct: 80 QIKICKKCEDNVFNILNNM--ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITA 137
Query: 656 -------------ALIEM-NAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSI 701
A+ + + TI L+ L + + + +++ + I
Sbjct: 138 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD----I 193
Query: 702 CERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQY 761
+ L N V + A+ L D K++ L L V
Sbjct: 194 RDCFVEMLQDKNEEVRIEAIIGLSYR-------KD------KRVLSVLCDELKKN-TVYD 239
Query: 762 VALR 765
+
Sbjct: 240 DIIE 243
Score = 55.2 bits (133), Expect = 2e-08
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D N L R + R + + D++ R A + ++
Sbjct: 33 DDHNSLKRISSARVLQLRGGQDAVR----LAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
L+ + L+D + V A A+ +
Sbjct: 89 DNVFNILNNM--ALNDKSACVRATAIEST 115
Score = 53.6 bits (129), Expect = 8e-08
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 125 CEDSNPLIRALAVRTMGCIRVDKITEYLCEP--LRKCLKDEDPYVRKTAAVCVAKLYDIN 182
C D N + R + +G I++ K E L D+ VR TA A+ N
Sbjct: 63 CSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN 122
Query: 183 AQLVEDQGFLDQLKDLLSDSNPMVVANAVAA 213
+ ++Q + D + V A
Sbjct: 123 P--IYSPKIVEQSQITAFDKSTNVRRATAFA 151
Score = 53.6 bits (129), Expect = 9e-08
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 126 EDSNPLIRALAVRTMGCIRVDK--ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINA 183
D + +RA A+ + + + E + D+ VR+ A ++ + D
Sbjct: 101 NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT 160
Query: 184 QLVEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
+ L +LL D N V A AI
Sbjct: 161 --------IPLLINLLKDPNGDVRNWAAFAI 183
Score = 52.1 bits (125), Expect = 2e-07
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
D + +R + I L LKD + VR AA + N+ +
Sbjct: 138 FDKSTNVRRATAFAISVINDKATIP----LLINLLKDPNGDVRNWAAFAININKYDNSDI 193
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
D ++L D N V A+ +
Sbjct: 194 R------DCFVEMLQDKNEEVRIEAIIGL 216
Score = 49.8 bits (119), Expect = 2e-06
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 128 SNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVE 187
SN + A + G K + + L + L D + R ++A + +A
Sbjct: 2 SNTYQKRKASKEYGLYNQCK--KLNDDELFRLLDDHNSLKRISSARVLQLRGGQDA---- 55
Query: 188 DQGFLDQLKDLLSDSNPMVVANAVAAI 214
+ + SD N + +
Sbjct: 56 ----VRLAIEFCSDKNYIRRDIGAFIL 78
Score = 49.0 bits (117), Expect = 2e-06
Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 26/173 (15%)
Query: 594 DPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTS 653
+ Y ++ A+ + D+L LL D N + ++ L
Sbjct: 3 NTYQKRKASKEYGLYNQ------CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----- 51
Query: 654 GVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHAN 713
+ + ++ + L E L +
Sbjct: 52 -------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKS 104
Query: 714 AAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALR 765
A V +A++ + + K+ + V+
Sbjct: 105 ACVRATAIESTAQR-------CKKNPIYSPKIVEQSQITAFDKSTNVRRATAF 150
Score = 47.1 bits (112), Expect = 1e-05
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
+D N +R A + + D + + + L+D++ VR A + ++ D
Sbjct: 169 KDPNGDVRNWAAFAININKYD--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV-- 224
Query: 186 VEDQGFLDQLKDLLSDSNP-MVVANAVAAI 214
L L D L + + A +
Sbjct: 225 ------LSVLCDELKKNTVYDDIIEAAGEL 248
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 60.6 bits (146), Expect = 2e-09
Identities = 77/491 (15%), Positives = 155/491 (31%), Gaps = 66/491 (13%)
Query: 416 LLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVL---SLATQDSDNPDLRD 472
+++ E +T+V++ L +VK+ + + L ++ SD ++
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL 277
Query: 473 RGFIYWRLLSTGNTFYILLHLTRLV------IASMTVGKDV-SALFPDVVNCMQTDN--- 522
+G +W + + S K L P + + +
Sbjct: 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND 337
Query: 523 ----LELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDC-EDSNPLIRALAVRTMGCI---- 573
K + LM A D + V F+K+ ++ + R AV GCI
Sbjct: 338 DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397
Query: 574 ---RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLS 630
++ + L + +KD VR TAA V ++ ++ + + +L L L
Sbjct: 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457
Query: 631 ---DSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSL 687
+ P V +N A S + EA+ + + + L
Sbjct: 458 EGLSAEPRVASNVCWAFSSLAEAAYEAADVADD------------------QEEPATYCL 499
Query: 688 SNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGD----FVSTLTK 743
S+ I +++ + LME++ V T
Sbjct: 500 SSSFEL-------IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552
Query: 744 KLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIM 803
+ L +L E +Q + R +Q +L ++ K +++ +M
Sbjct: 553 VIMERLQQVLQMESHIQSTSDRIQFNDLQ---SLLCATLQNVLRKVQHQDALQISD-VVM 608
Query: 804 IRLASQANIAQVNYVVQE----AIVVIKDIFRKYPNKY-ETIISTLCENLDTLDEPEARA 858
L + VQE A+ + ++ KY E L L E +
Sbjct: 609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668
Query: 859 SMIWIIGEYAE 869
+ + ++G+
Sbjct: 669 AAVGLVGDLCR 679
Score = 44.9 bits (105), Expect = 1e-04
Identities = 59/366 (16%), Positives = 127/366 (34%), Gaps = 36/366 (9%)
Query: 127 DSNPLIRALAVRTMGCI-------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY 179
+ + R AV GCI ++ + L + +KD VR TAA V ++
Sbjct: 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
Query: 180 DINAQLVEDQGFLDQLKDLLS---DSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICW 236
++ + + +L L L + P V +N A L +Y +++ +++
Sbjct: 437 ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 237 NL--PYLMNL-SVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGD----FVSTLTKKLAP 289
+ + + + LME++ V T +
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 290 PLVTLLSSEPEVQYVALRNINLIVQKR-----PDILKHEMKVFFVKYNDPIYVKLEKLDI 344
L +L E +Q + R +Q ++L+ ++ +D + L ++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 345 MIR---------LASQANIAQVL-SELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERC 394
L + + + +VL E +Y F+ ++ +V +A
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF-KPFLGIGLKN--YAEYQVCLAAVGL 673
Query: 395 VSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELV 454
V L +Q+ D +LL L + + V+ Q+L+ + L + ++ +
Sbjct: 674 VGDLCRALQSNIIPFCDEVMQLLLENLG-NENVHRSVKPQILSVFGDIALAIGGEFKKYL 732
Query: 455 QQVLSL 460
+ VL+
Sbjct: 733 EVVLNT 738
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 54.2 bits (131), Expect = 3e-08
Identities = 37/196 (18%), Positives = 76/196 (38%), Gaps = 16/196 (8%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCI------RVDKITEY-LCEPLRKCLKDEDPYVRK 599
+ V+ + A+R + I ++ + + L + L + + +
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 600 TAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVA 656
A ++ + + Q V D G L L LLS N ++ A+ ALS + +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 657 LIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICE-----RITPRLAH 711
+ ++A + L+ L+ E L +LSN + + + Q++ E ++ +H
Sbjct: 133 AV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 712 ANAAVVLSAVKVLMKL 727
N + A + L KL
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 47.6 bits (114), Expect = 5e-06
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 21/199 (10%)
Query: 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDI---NAQLVEDQGFLDQLKDLLSDSNPMVVANA 640
+ + L D ++A ++++ Q V D G L L LLS N ++ A
Sbjct: 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 641 VAALSEM---NEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDRE 697
+ ALS + V +A + L+ L+ E L +LSN + + +
Sbjct: 75 LWALSNIASGGNEQIQAVI----DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 698 AQSICER--ITP---RLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTL 752
Q++ + + L+ N ++ A+ L + + V L L
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA--GALEKLEQL 188
Query: 753 LSSE-PEVQYVA---LRNI 767
S E ++Q A L +
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 41.1 bits (97), Expect = 6e-04
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 153 CEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 209
L + L + + + A ++ + + Q V D G L L LLS N ++
Sbjct: 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115
Query: 210 AVAAILLL 217
A+ A+ +
Sbjct: 116 ALWALSNI 123
Score = 39.5 bits (93), Expect = 0.002
Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 45/176 (25%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKLYDI---NAQLVEDQGFLDQLKDLLSDSNPMVVANA 210
+ + L D ++A ++++ Q V D G L L LLS N ++ A
Sbjct: 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 211 VAAILLLPRKSYWQRNLSS---RKKQICWN---LPYLMNL-------SVIYPAWPLSTIN 257
+ A+ N++S + Q + LP L+ L + W LS I
Sbjct: 75 LWALS----------NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 258 PHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVA---LRNI 309
+ + P LV LLSS ++ A L NI
Sbjct: 125 SGGNEQIQAV---------------IDAGALPALVQLLSSPNEQILQEALWALSNI 165
Score = 37.2 bits (87), Expect = 0.012
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 126 EDSNPLIRALAVRTMGCIRV--DKITEYLCE-----PLRKCLKDEDPYVRKTAAVCV--- 175
N I A+ + I ++ + + + L + L + + + A +
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 176 AKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
A + Q V D G L L LLS N ++ A+ A+
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Score = 33.4 bits (77), Expect = 0.18
Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTA 671
+ L Q+ L+ + + +A+ LS++ + + ++A + L+
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAV-IDAGALPALVQL 62
Query: 672 LNECTEWGQVFILDSLSNYSPKDDREAQSICE-----RITPRLAHANAAVVLSAVKVLMK 726
L+ E L +LSN + + + Q++ + + L+ N ++ A+ L
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 727 LMEMLPGEGDFVSTLTKK-LAPPLVTLLSS-EPEVQYVA---LRNI 767
+ G + + + P LV LLSS ++ A L NI
Sbjct: 123 IAS---GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 53.4 bits (128), Expect = 2e-07
Identities = 67/426 (15%), Positives = 138/426 (32%), Gaps = 55/426 (12%)
Query: 352 ANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS-------AERCVSTLLDLIQ- 403
A + S++ E + A + + K V+ ++ ++
Sbjct: 16 APGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR 75
Query: 404 TKYAERIDNADELLESFLEGFHDENTQV-QLQLLTAIVKLFLKRPTDTQELVQQVLSLAT 462
+ + +L + G + V Q + ++L D QE Q V +L
Sbjct: 76 KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE--QAVWALGN 133
Query: 463 QDSDNPDLRDR----GFI--YWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVN 516
D+ RD + +L S N + + ++++ GK F V
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW-ALSNLCRGKSPPPEFAKVSP 192
Query: 517 CMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVD 576
C+ L L++ S D+ A + N I+A+
Sbjct: 193 CLNV----LSWLLF-------VSDTDVLADACWALSYLSDGPNDKIQAV----------- 230
Query: 577 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSN 633
I +C L + L D V A V + DI Q++ + L L LLS
Sbjct: 231 -IDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK 289
Query: 634 PMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPK 693
+ A +S + + + + + ++A L++ L + +++N +
Sbjct: 290 ESIKKEACWTISNITAGNRAQIQTV-IDANIFPALISILQTAEFRTRKEAAWAITNATSG 348
Query: 694 DDRE-AQSICER-----ITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAP 747
E + + E + L ++ +V A+ L ++ + G+ +
Sbjct: 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL----GEQEAKRNGTGIN 404
Query: 748 PLVTLL 753
P L+
Sbjct: 405 PYCALI 410
Score = 47.2 bits (112), Expect = 2e-05
Identities = 70/524 (13%), Positives = 143/524 (27%), Gaps = 137/524 (26%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKLYDIN-----AQLVEDQGFLDQLKDLLSDSNPMVVA 208
+ + + + P + +A KL +++ G + + + L +
Sbjct: 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 82
Query: 209 NAVAAILLLPRKSYWQRNLSSRKKQICWN------LPYLMNL------SVIYPA-WPLST 255
A +L N++S +P + L V A W L
Sbjct: 83 FESAWVL---------TNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGN 133
Query: 256 INPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYV-----ALRNIN 310
I + + + + L + PPL+ L S + + AL N+
Sbjct: 134 IAGDSTMCRDYV---------------LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178
Query: 311 LIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDV 370
P+ A ++ L+ L D
Sbjct: 179 RGKSPPPEF--------------------------------AKVSPCLNVLSWLLFVSDT 206
Query: 371 DFVRKAVRAIGRCAIKVEQSAER-----CVSTLLDLIQTKYAERIDNADELLESFLEGFH 425
D + A A+ + + L++L+ + + A + + + G
Sbjct: 207 DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG-D 265
Query: 426 DENTQ--VQLQLLTAIVKLFLKRPTDTQELVQQVLS-LATQDSDNPDLRDRGFIYWRLLS 482
D TQ + L +++ L ++ +S + +
Sbjct: 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ------------- 312
Query: 483 TGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPD 542
VI + +FP +++ +QT +K + N
Sbjct: 313 -------------TVIDAN--------IFPALISILQTAEFRTRKEAAWAITNATSGGSA 351
Query: 543 MAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAA 602
I + + PL L V KI + L L+ + A
Sbjct: 352 EQIKY----LVELGCIKPLCDLLTVMD------SKIVQVALNGLENILRLGE-----QEA 396
Query: 603 VCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSE 646
+ L+E+ LD+++ L S N + A +
Sbjct: 397 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Score = 41.4 bits (97), Expect = 0.001
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 152 LCEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVA 208
+C L + L D V A V + DI Q++ + L L LLS +
Sbjct: 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 209 NAVAAI 214
A I
Sbjct: 295 EACWTI 300
Score = 35.2 bits (81), Expect = 0.080
Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 16/179 (8%)
Query: 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM--NEASTSGVALIEMNAQTINKLL 669
N ++ + +++ +P +A ++ E + +I + + +
Sbjct: 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS-TPGVVARFV 70
Query: 670 TALNECTEWG-QVFILDSLSNYSPKDDREAQSICE-----RITPRLAHANAAVVLSAVKV 723
L Q L+N + + + + + + L+ V AV
Sbjct: 71 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130
Query: 724 LMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYV-----ALRNINLIVQKRPDI 777
L + D+V L + PPL+ L S + + AL N+ P+
Sbjct: 131 LGNIAGDSTMCRDYV--LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 51.9 bits (124), Expect = 6e-07
Identities = 60/450 (13%), Positives = 144/450 (32%), Gaps = 55/450 (12%)
Query: 349 ASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA------ERCVSTLLDLI 402
++Q + + ++ + +++ +A +A + + +Q + + +
Sbjct: 50 SNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL 109
Query: 403 Q-TKYAERIDNADELLESFLEGFHDENTQ--VQLQLLTAIVKLFLKRPTDTQELVQQVLS 459
T + + L + G E T+ V + A + L E L
Sbjct: 110 GKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168
Query: 460 LATQDSDNP--DLRDRGFI--YWRLLSTGNTFYILLHLTRLV---IASMTVGKDVSALFP 512
D + G I LL+ + + R + ++++ K+ +
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 513 DVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGC 572
V + T L +L++ + P++ + + N I +
Sbjct: 229 AVEQILPT----LVRLLH-------HNDPEVLADSCWAISYLTDGPNERIEMV------- 270
Query: 573 IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLL 629
+ + + L K L + + A + + D Q V D G L LL
Sbjct: 271 -----VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 630 SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSN 689
++ + A +S + + + +N + L+ L++ Q +++N
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQV-VNHGLVPFLVGVLSKADFKTQKEAAWAITN 384
Query: 690 YSPKDDREA------QSICERITPRLAHANAAVVLSAVKVLMKLMEMLP--GEGDFVSTL 741
Y+ E I E + L+ + ++ + + + + GE + +S +
Sbjct: 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 444
Query: 742 TKKLA--PPLVTLLSSE-PEVQYVALRNIN 768
++ + L E V +L I
Sbjct: 445 IEECGGLDKIEALQRHENESVYKASLNLIE 474
Score = 46.5 bits (110), Expect = 3e-05
Identities = 68/518 (13%), Positives = 137/518 (26%), Gaps = 129/518 (24%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKL----YDINAQLVEDQGFLDQLKDLLSDS-NPMVVA 208
E + K + + + A KL + G + + L + +
Sbjct: 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQF 119
Query: 209 NAVAAILLLPRKSYWQRNLSSRKKQICWNLPYL--MNLSVIYPA-WPLSTINPHTPLLKV 265
+ A+ + + Q I + L + + A W L I +
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 266 LMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS--EPEVQYVALRNINLIVQKRPDILKHE 323
L+ + PL+ LL+ + LRN+ +
Sbjct: 180 LV---------------IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN-------- 216
Query: 324 MKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRC 383
+ +P + Q+L L D + + + AI
Sbjct: 217 ----LCRNKNPA-------------PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259
Query: 384 AIKVEQSAER-----CVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQ--LL 436
+ E V L+ L+ + A + + + G DE TQ + L
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGAL 318
Query: 437 TAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRL 496
L T+ Q+ +S I
Sbjct: 319 AVFPSLLTNPKTNIQKEATWTMS----------------------------NITAGRQDQ 350
Query: 497 VIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCE 556
+ + G L P +V + + + +K + NY I+
Sbjct: 351 IQQVVNHG-----LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV---------- 395
Query: 557 DSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL-------- 608
+ G I EPL L +D + + ++ +
Sbjct: 396 ---------YLVHCGII----------EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 436
Query: 609 -YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALS 645
+ + ++E+ G LD+++ L N V ++ +
Sbjct: 437 ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 50.8 bits (122), Expect = 6e-07
Identities = 41/240 (17%), Positives = 83/240 (34%), Gaps = 22/240 (9%)
Query: 547 AVNTFVKDCEDSNPLIRALAVRTMGCI------RVDKITEY-LCEPLRKCLKDEDPYVRK 599
+ + + + A R I ++ + + L + L + + +
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 600 TAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVA 656
A ++ + + Q V D G L L LLS N ++ A+ ALS + +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 657 LIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICER--ITP---RLAH 711
+ ++A + L+ L+ E L +LSN + + + Q++ + + L+
Sbjct: 133 AV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 712 ANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYV----ALRNI 767
N ++ A+ L + + V L L S E E AL +
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEA--GALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 46.5 bits (111), Expect = 2e-05
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 33/140 (23%)
Query: 510 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRT 569
P +V + + N ++ + L N A + + AV
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNE--------------------QIQAVID 178
Query: 570 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI---NAQLVEDQGFLDQLK 626
G + L + L + + + A ++ + Q V++ G L++L+
Sbjct: 179 AGAL----------PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228
Query: 627 DLLSDSNPMVVANAVAALSE 646
L S N + A AL +
Sbjct: 229 QLQSHENEKIQKEAQEALEK 248
Score = 41.9 bits (99), Expect = 4e-04
Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 42/179 (23%)
Query: 153 CEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 209
L + L + + + A ++ + + Q V D G L L LLS N ++
Sbjct: 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115
Query: 210 AVAAILLLPRKSYWQRNLSS---RKKQICWN---LPYLMNL------SVIYPA-WPLSTI 256
A+ A+ N++S + Q + LP L+ L ++ A W LS I
Sbjct: 116 ALWAL----------SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 257 NPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQ 314
+ L P LV LLSS ++ AL ++ I
Sbjct: 166 ASGGNEQIQAVIDAGAL---------------PALVQLLSSPNEQILQEALWALSNIAS 209
Score = 40.4 bits (95), Expect = 0.001
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 126 EDSNPLIRALAVRTMGCI------RVDKITEY-LCEPLRKCLKDEDPYVRKTAAVCVAKL 178
N I A+ + I ++ + + L + L + + + A ++ +
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 179 ---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217
+ Q V D G L L LLS N ++ A+ A+ +
Sbjct: 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207
Score = 40.0 bits (94), Expect = 0.002
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKLYDI---NAQLVEDQGFLDQLKDLLSDSNPMVVANA 210
+ + L +D + +A +++ Q V D G L L LLS N ++ A
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 211 VAAIL 215
+ A+
Sbjct: 75 LWALS 79
Score = 38.8 bits (91), Expect = 0.005
Identities = 44/219 (20%), Positives = 69/219 (31%), Gaps = 52/219 (23%)
Query: 118 VGVFVKDCEDSNPLIRALAVRTMGCI------RVDKITEY-LCEPLRKCLKDEDPYVRKT 170
+ V+ N I A+ + I ++ + + L + L + + +
Sbjct: 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115
Query: 171 AAVC---VAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNL 227
A +A + Q V D G L L LLS N ++ A+ A+ N+
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL----------SNI 165
Query: 228 SSRKK-QICWN-----LPYLMNL------SVIYPA-WPLSTINPHTPLLKVLMKLMEMLP 274
+S QI LP L+ L ++ A W LS I K +K L
Sbjct: 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL- 224
Query: 275 GEGDFVSTLTKKLAPPLVTLLSSEPEVQYV----ALRNI 309
L L S E E AL +
Sbjct: 225 --------------EKLEQLQSHENEKIQKEAQEALEKL 249
Score = 36.1 bits (84), Expect = 0.031
Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 12/165 (7%)
Query: 612 NAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTA 671
+ L Q+ L+ + +A S++ + + ++A + L+
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAV-IDAGALPALVQL 62
Query: 672 LNECTEWGQVFILDSLSNYSPKDDREAQSI-----CERITPRLAHANAAVVLSAVKVLMK 726
L+ E L +LSN + + + Q++ + L+ N ++ A+ L
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 727 LMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVA---LRNI 767
+ + V + P LV LLSS ++ A L NI
Sbjct: 123 IASGGNEQIQAV--IDAGALPALVQLLSSPNEQILQEALWALSNI 165
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 52.2 bits (124), Expect = 7e-07
Identities = 87/614 (14%), Positives = 182/614 (29%), Gaps = 70/614 (11%)
Query: 121 FVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD 180
++ + V G R+ + L + + D A+VC+A++Y+
Sbjct: 174 ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYE 233
Query: 181 INAQLVEDQGFLDQ----LKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICW 236
F DQ +KD L + AI L + +
Sbjct: 234 NMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAI----------TALLNGPLDVGN 283
Query: 237 NLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLS 296
+ + ++ ++T + L+ + D L ++ L L
Sbjct: 284 QV--VAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQGVDILKRLYH 340
Query: 297 SE-PEVQY---VALRNINLIVQKRPDI----------LKHEMKVFFVKYNDPIYVKLEKL 342
S+ ++ V L + + I L + F +K ++
Sbjct: 341 SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400
Query: 343 DIMIRLASQANIAQVLSE-------LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV 395
D + L A + L E L + A + + V E+ +
Sbjct: 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM--L 458
Query: 396 STLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQ 455
+++L K+A++ + L+ + TA+ L ++QEL+
Sbjct: 459 PEMIEL--AKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA 516
Query: 456 QVL-SLATQDSDNPDLRDRGFIY--WRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFP 512
+VL ++ + G + R+ G +A + + + F
Sbjct: 517 RVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKR--HATQALARIGITINPEVSFS 574
Query: 513 DVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGC 572
+ ++ L+ L + ++MA+ E I
Sbjct: 575 GQRSLDV-----IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRI---------- 619
Query: 573 IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY---DINAQLVEDQGFLDQLKDLL 629
I E + L ++ Y+ + AA C+ L D+ + + L L
Sbjct: 620 -----IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC 674
Query: 630 SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSN 689
D + AL+ + S I A ++ L T + + Q + + N
Sbjct: 675 EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734
Query: 690 YSPKDDREAQSICE 703
+ A+ + E
Sbjct: 735 MINAGEEIAKKLFE 748
Score = 44.1 bits (103), Expect = 2e-04
Identities = 70/532 (13%), Positives = 142/532 (26%), Gaps = 78/532 (14%)
Query: 134 ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD 193
L + + + E + L++ ++ +R A V + KL
Sbjct: 313 CLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYG----------- 361
Query: 194 QLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPL 253
+ AA+ L + K W L L++
Sbjct: 362 ------GQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA----- 410
Query: 254 STINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQYVALRNI-NL 311
+ E L + + L+ L Y + NL
Sbjct: 411 --------------ECKEKLIEDKASI--------HALMDLARGGNQSCLYGVVTTFVNL 448
Query: 312 IVQKRPDILKHEMK--VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVD 369
+ EM F K + P +L+ +D + + + + + L A
Sbjct: 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508
Query: 370 VDFVRKAVRAIGRCAIKVEQ----SAERCVSTLLDLIQTKYAERIDNADELLESFLEGFH 425
+ R + E E V LL + + +A + L +
Sbjct: 509 HNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN 568
Query: 426 DENTQVQLQLLTAIVKL--FLKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLST 483
E + + L I L L++ E + +++L S N +R R +
Sbjct: 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR---IIKEQGV 625
Query: 484 GNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDM 543
Y L+ + + + DV+ + +N +K L L +
Sbjct: 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL----CEDEDEET 681
Query: 544 AIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAV 603
A S + + + L + + P V+ V
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIA-SWL----------DILHTLIANPSPAVQHRGIV 730
Query: 604 CVAKLYDIN---AQLVEDQGFLDQLKDLL---SDSNPMVVANAVAALSEMNE 649
+ + + A+ + + ++ L L D+ A L+
Sbjct: 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782
Score = 31.4 bits (70), Expect = 1.5
Identities = 44/336 (13%), Positives = 103/336 (30%), Gaps = 23/336 (6%)
Query: 144 RVDKITEY-LCEPLRKCLKDEDPYVRKTAAVCVAKL--YDINAQLVEDQGFLDQLKDLLS 200
R+ + + L K E ++ A + + V +G + L +
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546
Query: 201 DSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHT 260
+ +A A+ + +S ++ + L+NL T +
Sbjct: 547 EGTEKGKRHATQALARIGITI--NPEVSFSGQRSLDVIRPLLNLLQ-----QDCTALENF 599
Query: 261 PLLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDI 319
L L L M + + ++ + L + A + + +V I
Sbjct: 600 ESLMALTNLASMNESVRQRI--IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657
Query: 320 LKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVD--FVRKAV 377
E VK + + E D A +A + S + ++ ++
Sbjct: 658 KMFEGNNDRVK---FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714
Query: 378 RAIGRCAIKVEQSAERCVSTLLDLIQTKYAERID-NADELLESFLEGFHDENTQVQ---L 433
I + V+ + +++ + + + + ELL + D + +
Sbjct: 715 TLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774
Query: 434 QLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPD 469
Q L A + + +D + V + ++ S+ D
Sbjct: 775 QCLAAAERYRIIERSD-NAEIPDVFAENSKISEIID 809
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 51.6 bits (123), Expect = 9e-07
Identities = 44/290 (15%), Positives = 97/290 (33%), Gaps = 34/290 (11%)
Query: 512 PDVVNCMQTDNLELKKLVYLYLMNYAKS---HPDMAIM--AVNTFVKDCEDSNPLIR--- 563
++ ++ L + L N + PD +++ A+ T K +
Sbjct: 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 277
Query: 564 ALAVRTMGCIRVDKITEY----LCEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLV 616
A+ + + I + + L + L E V+ A V + D+ Q+V
Sbjct: 278 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 337
Query: 617 EDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECT 676
+ G L L+ LLS + A +S + +T + + ++A I L+ L
Sbjct: 338 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV-IDANLIPPLVKLLEVAE 396
Query: 677 EWGQVFILDSLSNYSPKDDREAQSI--------CERITPRLAHANAAVVLSAVKVLMKLM 728
+ ++SN S + I + + L A+ ++ + L ++
Sbjct: 397 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456
Query: 729 EMLPGEGDFVSTLTKKLA---------PPLVTLLSSE-PEVQYVALRNIN 768
+M + + + A + +E ++ A + I
Sbjct: 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506
Score = 46.6 bits (110), Expect = 3e-05
Identities = 51/387 (13%), Positives = 123/387 (31%), Gaps = 66/387 (17%)
Query: 126 EDSNPLIRALAVRTMGCI------RVDKITEY-LCEPLRKCLKDEDPYVRKTAAVCVAKL 178
E+ +++ A + I + + + + L V++ A + +
Sbjct: 141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 200
Query: 179 ---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQIC 235
V ++ + L + + P ++ A + L R Q + S +
Sbjct: 201 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA-- 258
Query: 236 WNLPYLMNL-------SVIYPAWPLSTINPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLA 288
LP L L +++ W +S ++ + + ++
Sbjct: 259 --LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV---------------IDVRIP 301
Query: 289 PPLVTLLSS-EPEVQYVALRNINLIVQKRPDILKHEMKVFFVKY------NDPIYVKLEK 341
LV LLS VQ ALR + IV + + + + +K E
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
Query: 342 LDIMIRLA--SQANIAQVLSE-----LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER- 393
+ + + I V+ L + + ++A AI + Q +
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
Query: 394 -------CVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKR 446
C+ L DL++ I+ + LE+ L+ + + + + +
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK-MGEADKEARGLNINENADFI--- 477
Query: 447 PTDTQELVQQVLSLATQDSDNPDLRDR 473
+ ++++ + Q ++N + ++
Sbjct: 478 --EKAGGMEKIFNC--QQNENDKIYEK 500
Score = 43.5 bits (102), Expect = 3e-04
Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 26/224 (11%)
Query: 152 LCEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVA 208
+ + L + L E V+ A V + D+ Q+V + G L L+ LLS +
Sbjct: 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 359
Query: 209 NAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSV---IYPAWPLSTINPHTPLLKV 265
A I + + Q I + L W +S +
Sbjct: 360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 419
Query: 266 LMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS-EPEVQYVALRNINLIVQKRPDILKHEM 324
+++ + +++ PL LL + + V L + I++ E
Sbjct: 420 IIRYL------------VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD--KEA 465
Query: 325 KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEV 368
+ + N K ++ + N ++ E A ++
Sbjct: 466 RGLNINENADFIEKAGGMEKIFNCQQNEN-----DKIYEKAYKI 504
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 48.6 bits (114), Expect = 9e-06
Identities = 79/644 (12%), Positives = 194/644 (30%), Gaps = 52/644 (8%)
Query: 121 FVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD 180
V D I + A+ ++ + + + D PY++ + +L
Sbjct: 524 VVACVGDPFYKITSEALLVTQ-----QLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578
Query: 181 INAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICW---- 236
+ + + + ++ + + ++ + + + + + K +
Sbjct: 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS 638
Query: 237 -----NLPYLMNLSVIYPAWPLST-INPHTPLLKVLMKLMEMLPGEGDFVSTLTKKLAPP 290
P L I ++ L L L++ + + +
Sbjct: 639 PLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDS--LTAAMIDAVLDE 696
Query: 291 LVTLLS-SEPEVQYVALRNINLIVQKRPDILKHEMKVFF---VKYNDPIYVKLEKLDIMI 346
L L+S S+ V +A+ + + + P L + ++ L M+
Sbjct: 697 LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAML 756
Query: 347 RL--------ASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTL 398
+ +L L K + A
Sbjct: 757 DFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPA 816
Query: 399 LDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVL 458
+ + + + D + L + + L + + L+ + E V+
Sbjct: 817 VVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAA 876
Query: 459 SLATQDSDNPDLRDR-GFIYWRLLSTGNTFYILLHLTRLVIASMT---VGKDVSALFPDV 514
S A +L + F+ + S Y+LLH + +I+S + + V ++ +
Sbjct: 877 SYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 515 VNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI- 573
+ + + +V L P+ + + ++ + R+ V +
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS---GSSYARSSVVTAVKFTI 993
Query: 574 -----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQ-LKD 627
+D + + K L+D D VR+ A V L+ D LD L
Sbjct: 994 SDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD--LLDTVLPH 1051
Query: 628 LLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVF--ILD 685
L +++ + G+ + + + + LL + + + + + D
Sbjct: 1052 LYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVED 1111
Query: 686 SLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLME 729
L KD + + + + RL+ + VL + L++ +
Sbjct: 1112 GL-----KDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLR 1150
Score = 31.2 bits (69), Expect = 1.7
Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 19/213 (8%)
Query: 4 SKYFTTTKKGEIFELKGELNSDKKEKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNL 63
+ + + E+ + E S E+ + A + S++VG ++ P V+ + +
Sbjct: 846 GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVG-NLPEYLPFVLQEITSQP- 903
Query: 64 ELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMID---------IRSIPLFDL 114
+ + L+ L S + + + + +C + + + L D
Sbjct: 904 KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 963
Query: 115 CSSVGVFVKDCEDSNPLIRALAVRTMGCI------RVDKITEYLCEPLRKCLKDEDPYVR 168
+ + + R+ V + +D + + K L+D D VR
Sbjct: 964 ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVR 1023
Query: 169 KTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSD 201
+ A V L+ D LD + L +
Sbjct: 1024 RVALVTFNSAAHNKPSLIRD--LLDTVLPHLYN 1054
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 46.9 bits (111), Expect = 1e-05
Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 33/234 (14%)
Query: 407 AERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRP----TDTQELVQQVLSLAT 462
+ +D ++ + F + ++ ++ + L + KL P + LV + + T
Sbjct: 7 LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT 66
Query: 463 QDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDN 522
+DS N L LL+ G + SA P ++ +
Sbjct: 67 KDS-NVVLVAMAGKCLALLAKGLAKRFSNY--------------ASACVPSLLEKFKEKK 111
Query: 523 LELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI--------R 574
+ + + S A V+ + NP +++ +
Sbjct: 112 PNVVTALREAIDAIYASTSLEAQQES--IVESLSNKNPSVKSETALFIARALTRTQPTAL 169
Query: 575 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDL 628
K+ + L L K L + DP VR ++A + L +L+ D+ L D+
Sbjct: 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI----KLMGDKAVTPLLADV 219
Score = 45.8 bits (108), Expect = 3e-05
Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 18/179 (10%)
Query: 505 KDVSALFPDVVNCMQTD-NLELKKLVYLYLMNYAKSHPD----MAIMAVNTFVKDCEDSN 559
+ AL + + D N+ L + L AK A V + ++ ++
Sbjct: 52 GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK 111
Query: 560 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ 619
P + + I E E + + L +++P V+ A+ +A+ ++
Sbjct: 112 PNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171
Query: 620 GFLDQ----LKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE 674
L L L++ +P V ++ AL + + M + + LL ++
Sbjct: 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL---------MGDKAVTPLLADVDP 221
Score = 39.6 bits (92), Expect = 0.003
Identities = 27/212 (12%), Positives = 63/212 (29%), Gaps = 38/212 (17%)
Query: 17 ELKGELNSDKKEKKREAVKKVI-----ASMTVGKDVSALFPDVVNCMQTDNLELKKLVYL 71
+ +L K ++E+++ + + AL + + D
Sbjct: 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD---------- 68
Query: 72 YLMNYAKSHPDMAIMAFSTF--FYQKSSSSFQCMIDIRSIPLFDLCSSVGVFVKDCEDSN 129
S+ + MA + + F L + +
Sbjct: 69 -------SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK----------EKK 111
Query: 130 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ 189
P + + I E E + + L +++P V+ A+ +A+ ++
Sbjct: 112 PNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171
Query: 190 GFLDQ----LKDLLSDSNPMVVANAVAAILLL 217
L L L++ +P V ++ A+ L
Sbjct: 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTL 203
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 47.9 bits (113), Expect = 1e-05
Identities = 74/592 (12%), Positives = 156/592 (26%), Gaps = 93/592 (15%)
Query: 150 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVAN 209
+ L +P + AA +A + DI + + D P V
Sbjct: 94 NQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKR 153
Query: 210 AVAAIL--LLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLM 267
A L + + L S I + + A L+ L L
Sbjct: 154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAA-------LNALA 206
Query: 268 KLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVF 327
+ + + + + + EVQ A + I+ K +K M+
Sbjct: 207 DSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQA 266
Query: 328 FVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKV 387
+ +A+ + ++ E + + A
Sbjct: 267 L---------------YALTIATMKSPND---KVASMTVEFWSTICEEEIDIAYELAQFP 308
Query: 388 EQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRP 447
+ + + + + N LL E D++ V + +
Sbjct: 309 QS-----PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 448 TDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDV 507
E V + + +DN R+ + + + G + V
Sbjct: 364 NHILEPVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYY-------------V 409
Query: 508 SALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAV 567
P ++N M +L++K + + +S
Sbjct: 410 HQALPSILNLMNDQSLQVK---------------ETTAWCIGRIADSVAES--------- 445
Query: 568 RTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI---NAQLVEDQGFLDQ 624
I + + + L+D P V + + L + +
Sbjct: 446 -----IDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPAL 499
Query: 625 LKDLL-----SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWG 679
+ L+ D+ A+A +AL+ M + + E +A ++ L +
Sbjct: 500 VDGLIGAANRIDNEFNARASAFSALTTM--VEYATDTVAETSASISTFVMDKLGQT---- 553
Query: 680 QVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEML 731
+ + + +D + Q + I LA S V LM +
Sbjct: 554 ---MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLF 602
Score = 39.4 bits (91), Expect = 0.006
Identities = 36/297 (12%), Positives = 82/297 (27%), Gaps = 41/297 (13%)
Query: 592 DEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEAS 651
+ R AA+ + + Q + + ++ + NA+ AL +
Sbjct: 52 NTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRI 111
Query: 652 TSGVALIEMNAQTINKLLTALNECTEWGQV--FILDSLSNYSPKDDREA-----QSICER 704
+ AQ I + W ++ ++D+ P++ + A +CE
Sbjct: 112 ANAA------AQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES 165
Query: 705 ITPRL--------------------AHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKK 744
P+ + AV L+A+ L + + +
Sbjct: 166 ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL 225
Query: 745 LAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFF----VKYNDPIY--VKLE 798
+ + + EVQ A + I+ K +K M+ + V
Sbjct: 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASM 285
Query: 799 KLDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPNKYETIISTLCENLDTLDEPE 855
++ + + + F + ++ L L +E
Sbjct: 286 TVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI--KDVVPNLLNLLTRQNEDP 340
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 45.0 bits (106), Expect = 5e-05
Identities = 21/185 (11%), Positives = 62/185 (33%), Gaps = 16/185 (8%)
Query: 506 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIM-----AVNTFVKDCE-DSN 559
+S + V ++ L+ + +++ + A+ ++ + D+
Sbjct: 79 QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC 138
Query: 560 PLIRALAVRTMGCI------RVDKITEYLC-EPLRKCLKDEDPYVRKTAAVCVAKL---Y 609
+R A+ + C+ + + L + ++ + ++ +A + L +
Sbjct: 139 DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198
Query: 610 DINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLL 669
+ + G + QL L+ + + + AL + GV + +LL
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258
Query: 670 TALNE 674
+
Sbjct: 259 RHRCQ 263
Score = 40.8 bits (95), Expect = 0.001
Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 23/174 (13%)
Query: 156 LRKCLKDEDPYVRKTAAVCVAKLYDINA---QLVEDQGFLDQLKDLL-SDSNPMVVANAV 211
+ + L+ +R AA + A + V G L +L LL D+ V A+
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146
Query: 212 AAILLLPRKSYWQRNLSSRKKQICWN--LPYLMNLSVIYPAWPLSTINPHTPLLKVLMKL 269
AI S R + Q LM + +K L
Sbjct: 147 FAI------SCLVREQEAGLLQFLRLDGFSVLMRA--------MQQQVQKL-KVKSAFLL 191
Query: 270 MEMLPGEGDFVSTLTKKLA-PPLVTLLSSE-PEVQYVALRNINLIVQKRPDILK 321
+L G + TL LV L+ +E L + +V P ++
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245
Score = 38.1 bits (88), Expect = 0.008
Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 45/199 (22%)
Query: 586 LRKCLKDEDPYVRKTAAVCVAKLYDINA---QLVEDQGFLDQLKDLL-SDSNPMVVANAV 641
+ + L+ +R AA + A + V G L +L LL D+ V A+
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146
Query: 642 AALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSI 701
A+S + +G+ + + L+ A+ + + +V L N ++
Sbjct: 147 FAISCLVREQEAGLLQF-LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205
Query: 702 CERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSE-PEVQ 760
C + LV L+ +E
Sbjct: 206 CSM---------------------------------------GMVQQLVALVRTEHSPFH 226
Query: 761 YVALRNINLIVQKRPDILK 779
L + +V P ++
Sbjct: 227 EHVLGALCSLVTDFPQGVR 245
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 45.3 bits (106), Expect = 8e-05
Identities = 92/759 (12%), Positives = 224/759 (29%), Gaps = 71/759 (9%)
Query: 150 EYLCEPLRKCLKDEDPYVRKTAAVCVAKL--YDINAQLVEDQGFLDQLKDLLSDSNPMVV 207
E + + + + ++ ++ + D + L L LS+ + +
Sbjct: 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT---LLSDLASRLSNDDMVTN 140
Query: 208 ANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLM 267
+ + ++ +I L + I + L
Sbjct: 141 KGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN 200
Query: 268 KLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVF 327
L ++L + P NI + + I +
Sbjct: 201 ILFDVLLVLIKLYYDFNCQDIPEFFE-------------DNIQVGMG----IFHKYLSYS 243
Query: 328 FVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKV 387
DP + + I ++ + Q + + ++ + +F++ + + +
Sbjct: 244 NPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQP 303
Query: 388 EQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRP 447
+ + VS L + ES + ++ I+ R
Sbjct: 304 KY--DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQ----------IILPNVTLRE 351
Query: 448 TDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLST------GNTFYILLHLTRLVIASM 501
D + + +D + D R L I L + +
Sbjct: 352 EDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQY 411
Query: 502 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDC---EDS 558
+ F D+ + T L + + ++ + ++ D
Sbjct: 412 MSDPSKNWKFKDLYIYLFT-ALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIP 470
Query: 559 NPLIRALAVRTMGCIRVDKITEYLCE---PLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 615
+ ++R A++ + R L E L L+ ++ V AA+ + K+ + +
Sbjct: 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKI--LTIRE 528
Query: 616 VEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNEC 675
K+ +S+S +++ N +A + + S +A E ++I ++L +
Sbjct: 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGS-SPEKLAENEFLMRSIFRVLQTSEDS 587
Query: 676 TEWGQVFILDSLSNY------SPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLM- 728
+ +L +P + R E I L + + V +M
Sbjct: 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFL 647
Query: 729 --------EMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKH 780
E +P ++ + ++ A ++ + + + + +LK
Sbjct: 648 TVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKS 707
Query: 781 EMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVNYVVQEAIVVIKDIFRKYPNKYETI 840
+K + D + V L I RL + + + E I+++ D+ R P + I
Sbjct: 708 FIKTDSSIFPDLVPV----LGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPY-IKQI 762
Query: 841 ISTLCENLDTLDEPEARASMIWIIGEYAERIDNADELLE 879
L + L + G + ++ +D L+
Sbjct: 763 AVLLLQRLQNSKTERYVKKLTVFFGLISNKL-GSDFLIH 800
Score = 32.6 bits (73), Expect = 0.65
Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
Query: 82 DMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSS-VGVFVKDCEDSNPLIRALAVRTM 140
D+ I F+ + ++ + + D + + + + ++R A++ +
Sbjct: 423 DLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482
Query: 141 GCIRVDKITEYLCE---PLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKD 197
R L E L L+ ++ V AA+ + K+ + + K+
Sbjct: 483 YTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKI--LTIRESNTSPAFIFHKE 540
Query: 198 LLSDSNPMVVANAVAAIL 215
+S+S +++ N +A IL
Sbjct: 541 DISNSTEILLKNLIALIL 558
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 43.3 bits (101), Expect = 3e-04
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 529 VYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRK 588
+ + YA + + A+ + DSN +R AV +G + + + ++
Sbjct: 563 AFTIALAYAGTGNNSAVKRL--LHVAVSDSNDDVRRAAVIALGFVLLRDY-TTVPRIVQL 619
Query: 589 CLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM- 647
K + +VR A + Q +D L L D V A+ ALS +
Sbjct: 620 LSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675
Query: 648 ---NEASTSGVALI 658
E VA I
Sbjct: 676 IQQTEKLNPQVADI 689
Score = 39.0 bits (90), Expect = 0.007
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
DSN +R AV +G + + + ++ K + +VR A +
Sbjct: 588 SDSNDDVRRAAVIALGFVLLRDY-TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-- 644
Query: 186 VEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217
Q +D L L D V A+ A+ ++
Sbjct: 645 --LQSAIDVLDPLTKDPVDFVRQAAMIALSMI 674
Score = 33.6 bits (76), Expect = 0.37
Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 5/142 (3%)
Query: 506 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRAL 565
+ SA+ + + N ++++ + L V + N +R
Sbjct: 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ---LLSKSHNAHVRCG 631
Query: 566 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ--GFLD 623
+G K + + L KD +VR+ A + ++ + + + Q
Sbjct: 632 TAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691
Query: 624 QLKDLLSDSNPMVVANAVAALS 645
++++ + +A A ++
Sbjct: 692 NFLSVITNKHQEGLAKFGACVA 713
Score = 29.8 bits (66), Expect = 5.8
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 120 VFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY 179
+ + N +R +G K + + L KD +VR+ A + ++ +
Sbjct: 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675
Query: 180 DINAQLVEDQ--GFLDQLKDLLSDS 202
+ + Q ++++
Sbjct: 676 IQQTEKLNPQVADINKNFLSVITNK 700
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 42.1 bits (98), Expect = 6e-04
Identities = 68/505 (13%), Positives = 132/505 (26%), Gaps = 73/505 (14%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 210
+ L +D + A + + Q V G + +L DLL N V A
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64
Query: 211 VAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMKLM 270
A+ RNL R N + I A L + + K L L+
Sbjct: 65 AGAL----------RNLVFRSTT---NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLL 111
Query: 271 EMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVK 330
L + L P L + P + + P++ +
Sbjct: 112 WNLSSTDELKEELIADALPVLADRVII-PFSGWCDGNSNMSREVVDPEVFFNATGC---- 166
Query: 331 YNDPIYVKLEKL----DIMIRLASQANIAQVLSELKEYATEV---DVDFVRKAVRAIGRC 383
L L + + + + L + D V + +
Sbjct: 167 --------LRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218
Query: 384 AIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLF 443
+ +++ L + Y E+ +S N L
Sbjct: 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS----DKMMNNNYDCPLPEEETNPK 274
Query: 444 LKRPTDTQELVQQVLSLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTV 503
+ ++ L+L S + + L+ + + +
Sbjct: 275 GSGWLYHSDAIRTYLNLM-GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGL 333
Query: 504 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIR 563
P + +Q+ N ++ + L N ++ +M F + R
Sbjct: 334 --------PQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVF-------PEVTR 378
Query: 564 ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLD 623
L T + I C +R + + A+ L+
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQ----------------PQLAKQYFSSSMLN 422
Query: 624 QLKDLL-SDSNPMVVANAVAALSEM 647
+ +L S ++P A LS+M
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDM 447
Score = 34.0 bits (77), Expect = 0.23
Identities = 33/257 (12%), Positives = 74/257 (28%), Gaps = 20/257 (7%)
Query: 459 SLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNCM 518
+L++ D+ +R+ + L++ Y+ + +V + L
Sbjct: 169 NLSSADAGRQTMRNYSGLIDSLMA-----YVQNCVAASRCDDKSVENCMCVLHNLSYRLD 223
Query: 519 QTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLI-RALAVRTMGCIRVDK 577
++L Y Y + + + + PL + G +
Sbjct: 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283
Query: 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY--------DINAQLVEDQGFLDQLKDLL 629
+ K + + A + L ++ + + L Q+ LL
Sbjct: 284 AIRTYLNLMGKS---KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL 340
Query: 630 SDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECT---EWGQVFILDS 686
N VV + + LS M+ + + +LLT+ T E +
Sbjct: 341 QSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400
Query: 687 LSNYSPKDDREAQSICE 703
+ N + A+
Sbjct: 401 VRNLMASQPQLAKQYFS 417
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 41.0 bits (96), Expect = 0.001
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 18/110 (16%)
Query: 566 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFL 622
+R C+ + L + LK + A + L + + + D G +
Sbjct: 258 ILRENNCL----------QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307
Query: 623 DQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL 672
LK+L+ + M+ + AAL + + I ++L
Sbjct: 308 SMLKNLIHSKHKMIAMGSAAALRNL-----MANRPAKYKDANIMSPGSSL 352
Score = 41.0 bits (96), Expect = 0.001
Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 20/205 (9%)
Query: 583 CEPLRKCLKDEDPYVRKTAAVCVAKL----YDINAQLVEDQGFLDQLKDLLSDSNPMVVA 638
CE +R+ A + + L A L +G + L L + +
Sbjct: 86 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 145
Query: 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQ----VFILDSLSNYSPKD 694
+ L ++ + ++ L+ E + + L +LS + ++
Sbjct: 146 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205
Query: 695 DRE---AQSICERITPRLAHAN----AAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLA 746
+ + L + + A++ S +L + ++ D L +
Sbjct: 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 265
Query: 747 PPLVTLLSSE-PEVQYVA---LRNI 767
L+ L S + A L N+
Sbjct: 266 QTLLQHLKSHSLTIVSNACGTLWNL 290
Score = 40.6 bits (95), Expect = 0.002
Identities = 17/152 (11%), Positives = 47/152 (30%), Gaps = 16/152 (10%)
Query: 559 NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI------N 612
+A G + L L + + ++ + + + +
Sbjct: 202 CTENKADICAVDGALAF------LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255
Query: 613 AQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL 672
Q++ + L L L + +V+NA L ++ + + + ++ L +
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGAVSMLKNLI 314
Query: 673 NECTEWGQ---VFILDSLSNYSPKDDREAQSI 701
+ + L +L P ++A +
Sbjct: 315 HSKHKMIAMGSAAALRNLMANRPAKYKDANIM 346
Score = 34.8 bits (80), Expect = 0.11
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 129 NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI------N 182
+A G + L L + + ++ + + + +
Sbjct: 202 CTENKADICAVDGALAF------LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255
Query: 183 AQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217
Q++ + L L L + +V+NA + L
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290
Score = 31.0 bits (70), Expect = 1.6
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 23/143 (16%)
Query: 180 DINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSR---KKQICW 236
+ +DQ K+ + + AV + LS + +
Sbjct: 22 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL----------MKLSFDEEHRHAMNE 71
Query: 237 N--LPYLMNLSVIYPAWPLSTINPHTPLLK--VLMKLMEMLPGEGDFVSTLTKKLA--PP 290
L + L + T + ++ L+ M L + G+ +TL
Sbjct: 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131
Query: 291 LVTLLSSE-PEVQYVA---LRNI 309
LV L SE ++Q V LRN+
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNL 154
Score = 30.2 bits (68), Expect = 2.9
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 35/185 (18%)
Query: 153 CEPLRKCLKDEDPYVRKTAAVCVAKL----YDINAQLVEDQGFLDQLKDLLSDSNPMVVA 208
CE +R+ A + + L A L +G + L L + +
Sbjct: 86 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 145
Query: 209 NAVAAILLLPRKSYWQRNLSSRKKQICWN-------LPYLMNLSVIYPAWPLSTINPHTP 261
+ + RNLS R + LM ++
Sbjct: 146 VIASVL----------RNLSWRADVNSKKTLREVGSVKALMECALEVKKEST-----LKS 190
Query: 262 LLKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSSEPEVQYV--------ALRNINLIV 313
+L L L + + L LV L+ + + LRN++ ++
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGAL-AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 314 QKRPD 318
D
Sbjct: 250 ATNED 254
Score = 29.0 bits (65), Expect = 6.3
Identities = 20/178 (11%), Positives = 48/178 (26%), Gaps = 21/178 (11%)
Query: 610 DINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEM--NEASTSGVA-------LIEM 660
+ +DQ K+ + + AV L ++ +E + + E+
Sbjct: 22 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAEL 81
Query: 661 NAQTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICER---ITP---RLAHANA 714
+ + + + +L+N + D ++C + +L +
Sbjct: 82 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141
Query: 715 AVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLL--SSEPEVQYV---ALRNI 767
+ VL L + L+ + AL N+
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSV-KALMECALEVKKESTLKSVLSALWNL 198
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 41.0 bits (95), Expect = 0.002
Identities = 41/292 (14%), Positives = 93/292 (31%), Gaps = 31/292 (10%)
Query: 413 ADELLESFLEGFHDE--NTQVQLQLLTAIVKL--FLKRPTDTQELVQQVLSLATQDSDNP 468
++E+L + ++G E + V+L A++ F K D + ++ + + + P
Sbjct: 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229
Query: 469 DLRDRGFIYWRLLSTGNTFYILL--HLTRLVIASMTVGKDVS---------------ALF 511
D R R L+ + +Y + ++ + A
Sbjct: 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289
Query: 512 PDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAI------MAVNTFVKDCEDSNPLIRAL 565
+ ++ E + YAK + + D +D NP A
Sbjct: 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349
Query: 566 -AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLV---EDQGF 621
+ + D I ++ +++ +K+ D R A + + +
Sbjct: 350 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409
Query: 622 LDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALN 673
+ L +L+ D + +V A + + E A + L+ L+
Sbjct: 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
Score = 40.6 bits (94), Expect = 0.002
Identities = 41/266 (15%), Positives = 91/266 (34%), Gaps = 26/266 (9%)
Query: 385 IKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFL 444
V+ +A + L+ + ++ +++ E +T+V++ L +VK+
Sbjct: 188 NNVKLAATNALLNSLEFTKAN-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 445 KRPTDTQELVQQVL---SLATQDSDNPDLRDRGFIYWRLLSTGNTFYILLH-------LT 494
+ + L ++ SD ++ +G +W + +
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306
Query: 495 RLVIASMTVGKDVSALFPDVVNCMQTDNLE-------LKKLVYLYLMNYAKSHPDMAIMA 547
+ + L P + + + K + LM A D +
Sbjct: 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH 366
Query: 548 VNTFVKDC-EDSNPLIRALAVRTMGCI-------RVDKITEYLCEPLRKCLKDEDPYVRK 599
V F+K+ ++ + R AV GCI ++ + L + +KD VR
Sbjct: 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426
Query: 600 TAAVCVAKLYDINAQLVEDQGFLDQL 625
TAA V ++ ++ + + +L L
Sbjct: 427 TAAWTVGRICELLPEAAINDVYLAPL 452
Score = 33.3 bits (75), Expect = 0.42
Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 8/174 (4%)
Query: 49 ALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQKSSSSFQCMIDIRS 108
ALF + M++D E+ + N D+AI A + +
Sbjct: 259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318
Query: 109 IP-----LFDLCSSVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE 163
+ L + D + + + + + D I ++ +++ +K+
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 164 DPYVRKTAAVCVAKLYDINAQLV---EDQGFLDQLKDLLSDSNPMVVANAVAAI 214
D R A + + + + L +L+ D + +V A +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432
Score = 30.6 bits (68), Expect = 2.4
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 126 EDSNPLIRALAVRTMGCI-------RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL 178
++ + R AV GCI ++ + L + +KD VR TAA V ++
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 179 YDINAQLVEDQGFLDQL 195
++ + + +L L
Sbjct: 436 CELLPEAAINDVYLAPL 452
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 40.3 bits (93), Expect = 0.003
Identities = 61/437 (13%), Positives = 127/437 (29%), Gaps = 75/437 (17%)
Query: 289 PPLVTLLSSE-PEVQYVA---LRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDI 344
P LV LL EV A L+NI+ + + K+ + +
Sbjct: 93 PVLVGLLDHPKKEVHLGACGALKNISFGRDQ-------DNKIAIKNCDG--------VPA 137
Query: 345 MIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEQS---AERCVSTLLDL 401
++RL +A D+D + + + + L D
Sbjct: 138 LVRLLRKAR---------------DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDE 182
Query: 402 IQTKYA--ERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLS 459
+ ++ ER N D NT L+ +++ ++ + LV ++
Sbjct: 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242
Query: 460 LATQDSDNPDLRDRGFIY--WRLLSTGNTFYILLHLTRLVIASMTVGKDVSALFPDVVNC 517
+ + D + L + + + + + + P
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302
Query: 518 MQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDK 577
+ ++ + L + + + + A+ IR+ A+R +
Sbjct: 303 LLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS-ALRQEKAL---- 357
Query: 578 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKL-YDINAQLVEDQGFLDQLKDLLSDSNPM- 635
+ L +E V K A+ + L D + + + + L L
Sbjct: 358 ------SAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNS 411
Query: 636 -------VVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSLS 688
V + + ++E+ + + Q I KL V I S
Sbjct: 412 SWNFSEDTVISILNTINEVIAENLEAAKKLR-ETQGIEKL------------VLINKS-G 457
Query: 689 NYSPKDDREAQSICERI 705
N S K+ R A + + I
Sbjct: 458 NRSEKEVRAAALVLQTI 474
Score = 39.6 bits (91), Expect = 0.004
Identities = 60/493 (12%), Positives = 139/493 (28%), Gaps = 81/493 (16%)
Query: 289 PPLVTLLSSE-PEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIR 347
P ++ +L V+ A + + + + K D+
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV---------------------KTDVRKL 89
Query: 348 LASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAI------KVEQSAERCVSTLLDL 401
+ + + A A+ + K+ V L+ L
Sbjct: 90 KGIPVLVGLLDHP--------KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141
Query: 402 IQ-TKYAERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSL 460
++ + + + L + + V L ++ + +E +
Sbjct: 142 LRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201
Query: 461 ATQDSDNPDLRDRGFIYWRLLSTG-NTFYILLHLTRLVIASMTVGKDVSALFPDVVNCMQ 519
+ L + + S L LV A + + + + + +
Sbjct: 202 HIEWESV--LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ--AEIGQKDSDSKL 257
Query: 520 TDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKIT 579
+N + L L + + V + ++P + +R+
Sbjct: 258 VENC-VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRI---- 312
Query: 580 EYLCEPLRKCLKDEDPYVRKTAAVCVAKL-------YDINAQLVEDQGFLDQLKDLLSDS 632
L++ + P + + +A + L + + L + DLL++
Sbjct: 313 --YISLLKES---KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367
Query: 633 NPMVVANAVAAL-----SEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQVFILDSL 687
+ VV A AL N+ A+ + + +E + IL+++
Sbjct: 368 HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427
Query: 688 SNYSPKDDREAQSICER-ITPRL------------AHANAAVVLSAVKVLMKLMEMLPGE 734
+ ++ A+ + E +L AA+VL + +L + L E
Sbjct: 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE 487
Query: 735 G----DFVSTLTK 743
G DF L
Sbjct: 488 GWKKSDFQVNLNN 500
Score = 34.2 bits (77), Expect = 0.19
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 154 EPLRKCLKDEDPYVRKTAAVCVAKL---YDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 210
+ L V+ AA + L D V + L LL V A
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGA 110
Query: 211 VAAILLL 217
A+ +
Sbjct: 111 CGALKNI 117
Score = 31.1 bits (69), Expect = 1.7
Identities = 27/93 (29%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 679 GQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFV 738
G + LDSL P Q + L AV +A L L V
Sbjct: 27 GSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDV 86
Query: 739 STLTKKLAPPLVTLLSSE-PEVQYVA---LRNI 767
L K P LV LL EV A L+NI
Sbjct: 87 RKL--KGIPVLVGLLDHPKKEVHLGACGALKNI 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 38.7 bits (90), Expect = 0.005
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 536 YAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDP 595
+ +++P +A+ + D RA+AVR E L ++D D
Sbjct: 47 FFRNNPHLAVQYLA-------DPFWERRAIAVRYSPV-----------EALTPLIRDSDE 88
Query: 596 YVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSE 646
VR+ A + + +QL L+ D + V L
Sbjct: 89 VVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLPL 124
Score = 37.6 bits (87), Expect = 0.011
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 22/101 (21%)
Query: 556 EDSNPLIR-ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAK------L 608
D + +R +A R E L + D D VR + +
Sbjct: 108 FDEDREVRITVADRLPL------------EQLEQMAADRDYLVRAYVVQRIPPGRLFRFM 155
Query: 609 YDINAQ---LVEDQGFLDQLKDLLSDSNPMVVANAVAALSE 646
D + Q LV + + L + D P V + L
Sbjct: 156 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG 196
Score = 36.8 bits (85), Expect = 0.021
Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 126 EDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQL 185
D RA+AVR E L ++D D VR+ A + +
Sbjct: 60 ADPFWERRAIAVRYSPV-----------EALTPLIRDSDEVVRRAVAYRLPR-------- 100
Query: 186 VEDQGFLDQLKDLLSDSNPMV---VANAVAAILLLP 218
+QL L+ D + V VA+ + L
Sbjct: 101 -------EQLSALMFDEDREVRITVADRLPLEQLEQ 129
Score = 35.2 bits (81), Expect = 0.065
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 22/99 (22%)
Query: 126 EDSNPLIR-ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAK------L 178
D + +R +A R E L + D D VR + +
Sbjct: 108 FDEDREVRITVADRLPL------------EQLEQMAADRDYLVRAYVVQRIPPGRLFRFM 155
Query: 179 YDINAQ---LVEDQGFLDQLKDLLSDSNPMVVANAVAAI 214
D + Q LV + + L + D P V + +
Sbjct: 156 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL 194
Score = 34.9 bits (80), Expect = 0.088
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 126 EDSNPLIRALAVRTMGCIRVDK------------ITEYLCEPLRKCLKDEDPYVRKTAA 172
+D P +R + + + + E+ + L + DP VR A
Sbjct: 180 QDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIA 238
Score = 34.9 bits (80), Expect = 0.088
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 556 EDSNPLIRALAVRTMGCIRVDK------------ITEYLCEPLRKCLKDEDPYVRKTAA 602
+D P +R + + + + E+ + L + DP VR A
Sbjct: 180 QDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIA 238
Score = 32.9 bits (75), Expect = 0.30
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 584 EPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED----------QGFLDQLKDLLSDSN 633
E L +D +P VR+ A + D +L+ D + + L + +
Sbjct: 173 ESLGLMTQDPEPEVRRIVASRLRG--DDLLELLHDPDWTVRLAAVEHASLEALRELDEPD 230
Query: 634 PMVVANAVAALS 645
P V L
Sbjct: 231 PEVRLAIAGRLG 242
Score = 32.9 bits (75), Expect = 0.37
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 26/100 (26%)
Query: 117 SVGVFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 176
G + D + +R L + + E L +D +P VR+ A +
Sbjct: 147 PPGRLFRFMRDEDRQVRKLVAKRLPE-----------ESLGLMTQDPEPEVRRIVASRLR 195
Query: 177 KLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILL 216
D L +LL D + V AV L
Sbjct: 196 G---------------DDLLELLHDPDWTVRLAAVEHASL 220
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 39.2 bits (91), Expect = 0.006
Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 20/205 (9%)
Query: 583 CEPLRKCLKDEDPYVRKTAAVCVAKL----YDINAQLVEDQGFLDQLKDLLSDSNPMVVA 638
CE +R+ A + + L A L +G + L L + +
Sbjct: 202 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261
Query: 639 NAVAALSEMNEASTSGVALIEMNAQTINKLLTALNECTEWGQ----VFILDSLSNYSPKD 694
+ L ++ + ++ L+ E + + L +LS + ++
Sbjct: 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
Query: 695 DRE---AQSICERITPRLAHAN----AAVVLSAVKVLMKLMEMLPGEGDFVSTLTK-KLA 746
+ + L + + A++ S +L + ++ D L +
Sbjct: 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381
Query: 747 PPLVTLLSSE-PEVQYVA---LRNI 767
L+ L S + A L N+
Sbjct: 382 QTLLQHLKSHSLTIVSNACGTLWNL 406
Score = 38.4 bits (89), Expect = 0.010
Identities = 16/148 (10%), Positives = 45/148 (30%), Gaps = 16/148 (10%)
Query: 559 NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI------N 612
+A G + L L + + ++ + + + +
Sbjct: 318 CTENKADICAVDGALAF------LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371
Query: 613 AQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTAL 672
Q++ + L L L + +V+NA L ++ + + + ++ L +
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGAVSMLKNLI 430
Query: 673 NECTEWGQ---VFILDSLSNYSPKDDRE 697
+ + L +L P ++
Sbjct: 431 HSKHKMIAMGSAAALRNLMANRPAKYKD 458
Score = 33.0 bits (75), Expect = 0.46
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 129 NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDI------N 182
+A G + L L + + ++ + + + +
Sbjct: 318 CTENKADICAVDGALAF------LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371
Query: 183 AQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLL 217
Q++ + L L L + +V+NA + L
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406
Score = 28.8 bits (64), Expect = 8.9
Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 27/181 (14%)
Query: 153 CEPLRKCLKDEDPYVRKTAAVCVAKL----YDINAQLVEDQGFLDQLKDLLSDSNPMVVA 208
CE +R+ A + + L A L +G + L L + +
Sbjct: 202 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261
Query: 209 NAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMNLSVIYPAWPLSTINPHTPLLKVLMK 268
+ + RNLS R L + + + LK ++
Sbjct: 262 VIASVL----------RNLSWRADVNSKKT--LREVGSVKALMECALEVKKESTLKSVLS 309
Query: 269 LMEMLPGEGDFVSTLTKKLA---PPLVTLLSSEPEVQYV--------ALRNINLIVQKRP 317
+ L + LV L+ + + LRN++ ++
Sbjct: 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369
Query: 318 D 318
D
Sbjct: 370 D 370
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 35.8 bits (82), Expect = 0.039
Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 23/219 (10%)
Query: 407 AERIDNADELLESFLEGFHDENTQVQLQLLTAIVKLFLKR-------PTDTQELVQQVLS 459
D+L + F E + +++ L L + + L+
Sbjct: 8 LPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGH 67
Query: 460 LATQDSDNPDLRDRGFIYWRLLSTG--NTFYILLHLTRLVIASMTVGKDVSALFPDVVNC 517
+ +D+ N L+ + +++ + + K+ P V+
Sbjct: 68 IIQKDA-NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKK---PSVIEA 123
Query: 518 MQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKD------CEDSNPLIRALAVRTMG 571
++ L + Y + + + + +K E + ++ G
Sbjct: 124 IRK---ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180
Query: 572 CIRVDK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY 609
+ + + + + + + + D P +R A L
Sbjct: 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219
Score = 32.0 bits (72), Expect = 0.71
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 131 LIRALAVRTMGCIRVDK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLY 179
++ G + + + + + + + + D P +R A L
Sbjct: 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219
Score = 30.0 bits (67), Expect = 2.9
Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 7/141 (4%)
Query: 626 KDLLSDSNPMVVANAVAALSEMNEASTSGVALIEMNAQTINKLLTALNE----CTEWGQV 681
+ D+N VA A ++ + + + + + LL E E +
Sbjct: 67 HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 682 FILDSLSNYSPKDDREA-QSICERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVS- 739
+L Y P + + + I + H + + ++ M+ +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 740 TLTKKLAPPLVTLLS-SEPEV 759
L ++ P ++ +++ ++P +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAI 207
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma
apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Length = 1056
Score = 36.5 bits (83), Expect = 0.049
Identities = 46/332 (13%), Positives = 112/332 (33%), Gaps = 27/332 (8%)
Query: 306 LRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLSELKEYA 365
+ + + +LKH ++ + ++ K +L +R + + +L +
Sbjct: 280 VTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQK 339
Query: 366 T--EVDVDFV-----RKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYA--ERIDNADEL 416
+D V +A+ + R + ++ + + + A E + A EL
Sbjct: 340 DYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYAREL 399
Query: 417 LESFLEGFHDE-NTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGF 475
L + L + + + + EL+Q + L +Q SD +
Sbjct: 400 LNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAK-EEEIV 458
Query: 476 IYWRLLSTGNTFYILLHLTRLVIASMTVGKDVS---------ALFPDVVNCMQTDNLELK 526
+ + L + + R + + S AL D +++
Sbjct: 459 LALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR----DPRKVQ 514
Query: 527 KLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPL 586
++V +N A ++ I + F + + S L+ +A + ++ ++ +
Sbjct: 515 EIVLPIFLNVAI-KSELRIRSCIVFFE-SKPSVALVSMVA-VRLRREPNLQVASFVYSQM 571
Query: 587 RKCLKDEDPYVRKTAAVCVAKLYDINAQLVED 618
R + +P R AA C + + ++L
Sbjct: 572 RSLSRSSNPEFRDVAAACSVAIKMLGSKLDRL 603
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 34.9 bits (79), Expect = 0.069
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 20/115 (17%)
Query: 524 ELKKLVYLYLMNYAKSH---PDMAIMAVNTFVKD-------------CEDSNPLIRALAV 567
+ + L+++ ++ ++ A + F K + SN R A
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAAT 160
Query: 568 ---RTMGCIRVDKITEYLCEP-LRKCLKDEDPYVRKTAAVCVAKLYDINAQLVED 618
R K + +D YVRK+ + + LV+
Sbjct: 161 EGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215
Score = 33.0 bits (74), Expect = 0.35
Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 24/132 (18%)
Query: 64 ELKKLVYLYLMNYAKSH---PDMAIMAFSTFFYQKSSSSFQCMIDIRSIPLFDLCSSVGV 120
+ + L+++ ++ ++ AF F + ++ +
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEF-----------------CKKIEYKKALPI 143
Query: 121 FVKDCEDSNPLIRALAV---RTMGCIRVDKITEYLCEP-LRKCLKDEDPYVRKTAAVCVA 176
+ + SN R A R K + +D YVRK+ +
Sbjct: 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALR 203
Query: 177 KLYDINAQLVED 188
+ LV+
Sbjct: 204 DISKKFPDLVKI 215
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.071
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 524 ELKKL-VYLYLMNYA-KSHPDMAIMA 547
LKKL L L YA S P +AI A
Sbjct: 21 ALKKLQASLKL--YADDSAPALAIKA 44
Score = 33.0 bits (74), Expect = 0.18
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 35/61 (57%)
Query: 28 EKKREAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYA-KSHPDMAIM 86
EK+ A+KK+ AS+ KL YA S P +AI
Sbjct: 18 EKQ--ALKKLQASL-------------------------KL-------YADDSAPALAIK 43
Query: 87 A 87
A
Sbjct: 44 A 44
Score = 32.2 bits (72), Expect = 0.29
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 27/54 (50%)
Query: 663 QTINKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSICERITPRLAHANAAV 716
Q + KL + SL Y+ D P LA A +
Sbjct: 20 QALKKL-----Q----------ASLKLYAD-DS----------APALA-IKATM 46
Score = 29.5 bits (65), Expect = 2.3
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 11/31 (35%)
Query: 187 EDQGFLDQLKDLLS-------DSNPMVVANA 210
E Q LK L + DS P + A
Sbjct: 18 EKQ----ALKKLQASLKLYADDSAPALAIKA 44
Score = 29.5 bits (65), Expect = 2.3
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 11/31 (35%)
Query: 617 EDQGFLDQLKDLLS-------DSNPMVVANA 640
E Q LK L + DS P + A
Sbjct: 18 EKQ----ALKKLQASLKLYADDSAPALAIKA 44
Score = 28.4 bits (62), Expect = 6.3
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 23/51 (45%)
Query: 340 EKLDIMIRLASQANIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIK--VE 388
EK QA + ++ + LK YA + + A+ AIK +E
Sbjct: 18 EK---------QA-LKKLQASLKLYADD--------SAPAL---AIKATME 47
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 33.6 bits (76), Expect = 0.23
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 19/174 (10%)
Query: 597 VRKTAAVCVAKLYDINAQLVEDQG-------FLDQLKDLLSDSNPMVVANAVAALSEMNE 649
R A + +L+ + + ++DSN + A+ AL+ + +
Sbjct: 25 ARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLID 84
Query: 650 ASTSGVALIEMNAQT--------INKLLTALNECTEWGQVFILDSLSNYSPKDDREAQSI 701
A S N + K LT+ T+ + + SL D
Sbjct: 85 AFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL----DTSITQS 140
Query: 702 CERITPRLAHANAAVVLSAVKVLMKLMEMLPGEGDFVSTLTKKLAPPLVTLLSS 755
E + P ++ +A + +LM V T +L + L
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH 194
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
2i6a_A* 2i6b_A*
Length = 345
Score = 31.9 bits (73), Expect = 0.82
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 368 VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLL---------DLIQTKYAERIDNADELLE 418
VD + + + G CA + ++ L L K ++ A
Sbjct: 108 VDAHYYEQNEQPTGTCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVC-- 165
Query: 419 SFLEGFH 425
++ GF
Sbjct: 166 -YIAGFF 171
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 32.2 bits (72), Expect = 0.91
Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 10/163 (6%)
Query: 532 YLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 591
YL + + + V + I+ L+ + + + + E K ++
Sbjct: 289 YLKEFVEDKDGL----CRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIE 344
Query: 592 DEDPYVRKTAAVC--VAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAALSEMNE 649
E+ + + K+Y N +L L + + P V + + + ++E
Sbjct: 345 SEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE 404
Query: 650 ASTSGV----ALIEMNAQTINKLLTALNECTEWGQVFILDSLS 688
S + LIE + + L + + + IL ++
Sbjct: 405 ESIDFLVAEVVLIEEKDEIREMAIKLLKKRRDLPKNLILHFMN 447
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, unknown function; 1.90A {Bacillus cereus} SCOP:
a.118.1.17
Length = 235
Score = 30.7 bits (69), Expect = 1.9
Identities = 11/139 (7%), Positives = 29/139 (20%), Gaps = 19/139 (13%)
Query: 519 QTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKI 578
T N + + + + ++ +
Sbjct: 58 ATGNYDAM-YFAGIIADPKAMSESDF----DRWIDG-------AYFYMLSDYVVAVTLSE 105
Query: 579 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDINAQLVEDQ----GFLDQLKDLLSDSNP 634
+ + K + D C L + L+ +KD + S
Sbjct: 106 SNIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPE 165
Query: 635 MV---VANAVAALSEMNEA 650
+ N + ++
Sbjct: 166 RTKSAMNNFLNTVAISYVP 184
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium
bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Length = 899
Score = 31.1 bits (69), Expect = 1.9
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 9/108 (8%)
Query: 160 LKDEDPYVRKTAAVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANAVAAILLLPR 219
D D V T ++ D S P+ V ++ +
Sbjct: 597 KGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSLLKPIEVGDSGQ-----IK 651
Query: 220 KSYWQRNLSSRKKQICWNL----PYLMNLSVIYPAWPLSTINPHTPLL 263
+ Y++ L +K + ++S + +P I
Sbjct: 652 EWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITIDNSEY 699
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 30.6 bits (68), Expect = 2.8
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 505 KDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSHPDMAIMAVNTFVKDCEDSNPLIRA 564
++ P ++ ++ + LE + L + K P A+ D + +R
Sbjct: 589 ENFPQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREAL---ELL--DFNYPDQYVRE 643
Query: 565 LAVRTMGCIRVDKITEYL 582
AV + + +++++YL
Sbjct: 644 YAVGCLRQMSDEELSQYL 661
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 30.3 bits (69), Expect = 3.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 334 PIYVKLEKLDIMIRLASQANIAQVLSE-----LKEY----ATE-VDVDFVRKAVRAIGRC 383
PI V+L L S A+ ++L+E ++Y ATE V++ F AV+ I
Sbjct: 194 PIRVELTAL-------SAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEA 246
Query: 384 AIKVEQSAE 392
A +V + E
Sbjct: 247 AFRVNEKTE 255
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 30.7 bits (69), Expect = 3.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 64 ELKKLVYLYLMNYAKSHPDMAIMAFSTFFYQ 94
+K V+ + K P ++ F+TFFYQ
Sbjct: 187 ATRKFVFDTFEQWLKDSPQTDVVRFTTFFYQ 217
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 30.5 bits (68), Expect = 3.2
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 586 LRKCLKDEDPYVRKTA-----AVCVAKLYDINAQLVEDQGFLDQLKDLLSDSNPMVVANA 640
L L++ D +VR ++ + ++ + +L DLL+DS ++ +
Sbjct: 127 LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186
Query: 641 VAALSEMNEAST 652
V L + ++
Sbjct: 187 VLLLQALTRSNG 198
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein,
structural genomics, PSI- 2, protein structure
initiative; 3.00A {Corynebacterium diphtheriae}
Length = 583
Score = 30.3 bits (68), Expect = 3.2
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 18/169 (10%)
Query: 370 VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKYAERIDNADELLESFLEGFHDENT 429
VD + +A+ A+G +E+ A V T L + + E
Sbjct: 376 VDRMYQAMIALGHRPPTIEEIAGPFVETTL---------VGGRPVLPVLELVSSIVPEAR 426
Query: 430 QVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDN--PDLRDRGFIYWRLLSTGNTF 487
Q ++ ++ L +RP T ++V + L + + N R L+ +
Sbjct: 427 QDDYRIA-IVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGV 485
Query: 488 YILLHLTRLVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNY 536
++L + R ++ + V + TD EL L+L
Sbjct: 486 WLLGNACREILRKVEPSPF------SPVRYLSTDQAELTNAAMLWLSEV 528
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 30.0 bits (67), Expect = 3.8
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 822 AIVVIKDIFRKYPNKYETIISTLCENLDTLDEPEAR---------ASMIWIIGEYAERID 872
+V + R Y + + TL + L + ++ + + +
Sbjct: 11 LLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIRLAVVKVVVLGDKDKSLEVS 70
Query: 873 -NADELLESFLE 883
NA L++F +
Sbjct: 71 KNAATTLKNFCK 82
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 29.2 bits (65), Expect = 4.8
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 537 AKSHPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG--CIRVDKITEYLCEPLRKCLKDED 594
S ++A + + + DSN +R V + C ++ ++ + L+D
Sbjct: 44 LGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNS 103
Query: 595 PYVRKTAAVCVAKLY 609
V K +Y
Sbjct: 104 AQVIKRVIQACGSIY 118
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 29.4 bits (65), Expect = 5.2
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 190 GFLDQLKDLLSDSNPMVVANAVAAILLLPRKSYWQRNLSSRKKQICWNLPYLMN 243
G + +++L+ + + L + Q N+ + +KQ+ +PYL
Sbjct: 340 GDSNVVRELIERVSDKLQLQLFGGNLDGGVAMFKQLNVEATRKQV---VPYLEE 390
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2,
protein structure initiative; HET: MSE; 2.60A
{Haloarcula marismortui atcc 43049}
Length = 199
Score = 28.1 bits (63), Expect = 9.9
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 414 DELLESFLEGFHDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDR 473
D LLE F++ HD T L ++ L +P + +L +L + +Q DR
Sbjct: 67 DYLLERFVDSIHDVETTDPEARLNLLLDELLVKPQENPDLSVALLEMRSQAPYKEAFSDR 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.385
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,008,899
Number of extensions: 798219
Number of successful extensions: 2300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1956
Number of HSP's successfully gapped: 239
Length of query: 883
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 781
Effective length of database: 3,853,851
Effective search space: 3009857631
Effective search space used: 3009857631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.2 bits)