Query psy2919
Match_columns 158
No_of_seqs 116 out of 1532
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:57:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 100.0 3.1E-31 6.6E-36 234.3 14.5 131 26-158 14-169 (765)
2 PLN03185 phosphatidylinositol 100.0 5.2E-31 1.1E-35 232.8 15.5 130 26-158 60-191 (765)
3 COG4642 Uncharacterized protei 99.8 1.4E-18 3E-23 123.8 10.1 124 26-151 14-139 (139)
4 COG4642 Uncharacterized protei 99.7 5E-17 1.1E-21 115.8 9.9 117 40-158 5-123 (139)
5 KOG0231|consensus 99.6 7.2E-16 1.6E-20 131.3 7.1 127 30-158 129-272 (455)
6 KOG0231|consensus 99.5 1.3E-14 2.9E-19 123.6 5.4 138 18-157 140-294 (455)
7 smart00698 MORN Possible plasm 98.1 7.5E-06 1.6E-10 42.7 3.7 21 137-157 2-22 (26)
8 smart00698 MORN Possible plasm 98.0 1E-05 2.3E-10 42.1 3.9 23 44-66 1-23 (26)
9 PF02493 MORN: MORN repeat; I 97.9 1.5E-05 3.2E-10 40.1 2.9 22 46-67 1-22 (23)
10 PF02493 MORN: MORN repeat; I 97.9 1.1E-05 2.3E-10 40.6 2.2 21 138-158 1-21 (23)
11 COG2849 Uncharacterized protei 97.7 0.0043 9.3E-08 48.7 15.2 107 45-151 99-209 (230)
12 COG2849 Uncharacterized protei 97.3 0.033 7.1E-07 43.8 15.6 122 25-146 102-228 (230)
13 PF07617 DUF1579: Protein of u 36.0 90 0.0019 23.1 4.7 34 45-78 52-86 (159)
14 PF00988 CPSase_sm_chain: Carb 31.2 1.3E+02 0.0029 21.6 4.7 31 36-66 3-33 (131)
15 PF07661 MORN_2: MORN repeat v 27.1 76 0.0016 14.4 3.0 17 58-74 4-20 (22)
16 PF07617 DUF1579: Protein of u 24.3 2.1E+02 0.0045 21.1 4.9 35 91-125 52-89 (159)
17 PF14438 SM-ATX: Ataxin 2 SM d 22.8 1.1E+02 0.0025 19.2 2.9 16 36-51 15-30 (77)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.97 E-value=3.1e-31 Score=234.25 Aligned_cols=131 Identities=29% Similarity=0.636 Sum_probs=80.0
Q ss_pred cccCCeeeeeEEEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCEEEeeEece-----
Q psy2919 26 AFSAKTHVNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSAYEGQWQNG----- 99 (158)
Q Consensus 26 ~~~~~~~~G~G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~y~G~f~~g----- 99 (158)
.|.+++++|.|++.|+||.+|+|+|+++++||.|++++++++ +|+|+|.+++ ||.|+++++++.+|+|+|+++
T Consensus 14 e~~~g~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~-~YeGeF~nG~~hG~G~~~~~~G~~YeG~w~~gkkhG~ 92 (765)
T PLN03185 14 SLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGA-TYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGL 92 (765)
T ss_pred EEECCccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCC-EEEEEEECCEEeceEEEEecCCCEEEEEEeCCcccce
Confidence 445555555555555555555555555555555555555555 5555555552 555555555555555555555
Q ss_pred ------------------EEEeeEEEEe-CCeEEEEEEECCeecceEEEEECCCCcEEEEEEcCCeEeeeEEEEecCC
Q psy2919 100 ------------------KRHGLGVESR-GRWIYRGEWTQGFKGRYGVRQSSTSNAKYEGTWANGLQDGYGSETYADG 158 (158)
Q Consensus 100 ------------------~~~G~G~~~~-~g~~Y~G~~~~g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G~~~~~~G 158 (158)
+++|.|++++ ++.+|+|+|+++++||.|+++++++ ++|+|.|.++++||.|+++++||
T Consensus 93 G~~~y~nG~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~nG-~~YeG~w~nG~~hG~G~y~~~DG 169 (765)
T PLN03185 93 GYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVSG-DSYEGQWLDGMMHGFGVYTWSDG 169 (765)
T ss_pred eEEEEecchhhhhhhhcCceecceeeeccCCCeEEEEecCCEEecCEEEEEeCC-CeEEEEEeCCcceeeEEEEECCC
Confidence 4555555553 5567777777777777777777776 77777777777777777777765
No 2
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.97 E-value=5.2e-31 Score=232.81 Aligned_cols=130 Identities=35% Similarity=0.668 Sum_probs=102.7
Q ss_pred cccCCeeeeeEEEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCEEEeeEeceEEEee
Q psy2919 26 AFSAKTHVNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSAYEGQWQNGKRHGL 104 (158)
Q Consensus 26 ~~~~~~~~G~G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~y~G~f~~g~~~G~ 104 (158)
.|.+++++|.|++.++++..|+|+|+++++||.|++++++++ +|+|+|+++. +|.|++.+++|++|+|+|++|+++|.
T Consensus 60 eF~nG~~hG~G~~~~~~G~~YeG~w~~gkkhG~G~~~y~nG~-vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk~~G~ 138 (765)
T PLN03185 60 EFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGLGYQRYPNGD-VFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGK 138 (765)
T ss_pred EEECCEEeceEEEEecCCCEEEEEEeCCcccceeEEEEecch-hhhhhhhcCceecceeeeccCCCeEEEEecCCEEecC
Confidence 455555555555555555555555555555555555556665 6666666663 67778888889999999999999999
Q ss_pred EEEEe-CCeEEEEEEECCeecceEEEEECCCCcEEEEEEcCCeEeeeEEEEecCC
Q psy2919 105 GVESR-GRWIYRGEWTQGFKGRYGVRQSSTSNAKYEGTWANGLQDGYGSETYADG 158 (158)
Q Consensus 105 G~~~~-~g~~Y~G~~~~g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G~~~~~~G 158 (158)
|++++ ++.+|+|+|+++++||.|+++++++ .+|+|.|.++++||.|+++ ++|
T Consensus 139 G~l~~~nG~~YeG~w~nG~~hG~G~y~~~DG-~~Y~G~W~~G~~~G~G~~y-~~G 191 (765)
T PLN03185 139 GTLTWVSGDSYEGQWLDGMMHGFGVYTWSDG-GCYVGTWTRGLKDGKGVFY-PAG 191 (765)
T ss_pred EEEEEeCCCeEEEEEeCCcceeeEEEEECCC-CEEEEEeeCCceEeEEEEE-ECC
Confidence 99995 8999999999999999999999998 9999999999999999985 554
No 3
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=1.4e-18 Score=123.78 Aligned_cols=124 Identities=25% Similarity=0.483 Sum_probs=117.1
Q ss_pred cccCCeeeeeEEEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecC-eeeeEEEEcCCCCEEEeeEeceEEEee
Q psy2919 26 AFSAKTHVNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYG-FEVSGVYIWPSGSAYEGQWQNGKRHGL 104 (158)
Q Consensus 26 ~~~~~~~~G~G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g-~~G~G~~~~~~g~~y~G~f~~g~~~G~ 104 (158)
.|..++..+.+++..++++.+.+.+++++..|.|++.+.+++ .|+|.++++ ++|+|+++++++++|+|.|.+++++|.
T Consensus 14 ~~~~g~~~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~-~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~F~s~~F~g~ 92 (139)
T COG4642 14 FFVRGKLEGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGR-IYTGTLKNGKMNGQGTYTFANGDIYEGPFNSGKFRGQ 92 (139)
T ss_pred EEecccccccceEEeccccEEeeeEeeeecCCCccEEEcCCc-cccceEEcCcccCcEEEEecCCCeEeccccCccccce
Confidence 467788899999999999999999999999999999999999 899999999 599999999999999999999999999
Q ss_pred EEEEe-CCeEEEEEEECCeecceEEEEECCCCcEEEEEEcCCeEeeeE
Q psy2919 105 GVESR-GRWIYRGEWTQGFKGRYGVRQSSTSNAKYEGTWANGLQDGYG 151 (158)
Q Consensus 105 G~~~~-~g~~Y~G~~~~g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G 151 (158)
|.+.. ++..|.|.|..++.+|.|.+...++ .+|.|.++.+++++++
T Consensus 93 G~~~~~~Gw~~~G~F~~Gq~~g~g~l~~~~g-~vy~G~fk~g~f~~~~ 139 (139)
T COG4642 93 GTRGSFNGWLYIGRFTEGQANGKGFLLKEDG-SVYTGMFKQGRFPKNG 139 (139)
T ss_pred EeeccccCCEEeeeecccccCCceeEEecCC-cEEeeeEEeeecCCCC
Confidence 99985 8999999999999999999999997 9999999999998764
No 4
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=5e-17 Score=115.82 Aligned_cols=117 Identities=26% Similarity=0.347 Sum_probs=110.5
Q ss_pred ECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCEEEeeEeceEEEeeEEEE-eCCeEEEEE
Q psy2919 40 FDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSAYEGQWQNGKRHGLGVES-RGRWIYRGE 117 (158)
Q Consensus 40 ~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~y~G~f~~g~~~G~G~~~-~~g~~Y~G~ 117 (158)
..-+..|+++|..++..+.+++..+... ++.+.+++++ .|+|.+.+.+|.+|+|+++|++++|.|+++ .++++|+|.
T Consensus 5 ~a~g~~y~~~~~~g~~~g~s~~~~~~ca-r~~g~~kqg~~~Gkgs~~~~~G~~Y~Gtl~ngk~nGqG~~~~~ngd~Y~g~ 83 (139)
T COG4642 5 LAFGLRYEGFFVRGKLEGLSTYDILGCA-RVGGSLKQGKLAGKGSLKYDNGRIYTGTLKNGKMNGQGTYTFANGDIYEGP 83 (139)
T ss_pred hhhheeeeeEEecccccccceEEecccc-EEeeeEeeeecCCCccEEEcCCccccceEEcCcccCcEEEEecCCCeEecc
Confidence 3456789999999999999999999998 9999999996 899999999999999999999999999999 589999999
Q ss_pred EECCeecceEEEEECCCCcEEEEEEcCCeEeeeEEEEecCC
Q psy2919 118 WTQGFKGRYGVRQSSTSNAKYEGTWANGLQDGYGSETYADG 158 (158)
Q Consensus 118 ~~~g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G~~~~~~G 158 (158)
|++++++|.|++...++ .+|+|.|.++...|+|.+..+|+
T Consensus 84 F~s~~F~g~G~~~~~~G-w~~~G~F~~Gq~~g~g~l~~~~g 123 (139)
T COG4642 84 FNSGKFRGQGTRGSFNG-WLYIGRFTEGQANGKGFLLKEDG 123 (139)
T ss_pred ccCccccceEeeccccC-CEEeeeecccccCCceeEEecCC
Confidence 99999999999999997 99999999999999999998875
No 5
>KOG0231|consensus
Probab=99.62 E-value=7.2e-16 Score=131.30 Aligned_cols=127 Identities=31% Similarity=0.582 Sum_probs=112.4
Q ss_pred CeeeeeEEEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCEEEeeEece----EEEee
Q psy2919 30 KTHVNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSAYEGQWQNG----KRHGL 104 (158)
Q Consensus 30 ~~~~G~G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~y~G~f~~g----~~~G~ 104 (158)
+...+.+...++++++|+|+|.+++++|.|+.+++++. .|+|+|.+++ ||+|++++++|++|+|+|+++ .++|.
T Consensus 129 ~~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~-~Y~Gew~~n~~hG~G~~~~pdGsk~eg~~~~~~l~~l~~gk 207 (455)
T KOG0231|consen 129 GTRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGL-KYEGEWLDNRRHGYGVLTFPDGSKYEGQYKNNILEALRHGK 207 (455)
T ss_pred cccCccceEecCCCCEEEeeecCCcccccceEEecCCC-EeeceecCCCccCCCeEEccCCCEEEEEeecccccccccce
Confidence 46789999999999999999999999999999999998 9999999996 999999999999999999999 88999
Q ss_pred EEEEeC-----------CeEEEEEEEC-CeecceEEEEECCCCcEEEEEEcCCeEeeeEEEEecCC
Q psy2919 105 GVESRG-----------RWIYRGEWTQ-GFKGRYGVRQSSTSNAKYEGTWANGLQDGYGSETYADG 158 (158)
Q Consensus 105 G~~~~~-----------g~~Y~G~~~~-g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G~~~~~~G 158 (158)
+.+..+ ..+|.++|.. ...|+.+.+...++ ..|.+.|..+..++.+.+.++|+
T Consensus 208 ~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g-~~~~~~~~~~~~~g~~~~~~~~~ 272 (455)
T KOG0231|consen 208 GRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADG-SAYAGQEDAGVARGLAKLHFPNG 272 (455)
T ss_pred EEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccc-cchhhhhhcCccccccceecccc
Confidence 988743 5789999988 88888888888886 77788887777777777776653
No 6
>KOG0231|consensus
Probab=99.51 E-value=1.3e-14 Score=123.61 Aligned_cols=138 Identities=24% Similarity=0.440 Sum_probs=118.7
Q ss_pred CcCCCcCccccCCeeeeeEEEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecC----e-eeeEEEEcCC----
Q psy2919 18 ASTGATGTAFSAKTHVNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYG----F-EVSGVYIWPS---- 88 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~~G~G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g----~-~G~G~~~~~~---- 88 (158)
..+..+-..|.+++++|.|++++++|..|+|+|.++++||+|++++|+++ +|+|.|.++ + ++++++.+.+
T Consensus 140 ~~g~~Y~G~~~~~k~sG~Gv~~~~~G~~Y~Gew~~n~~hG~G~~~~pdGs-k~eg~~~~~~l~~l~~gk~~~~~~~~~~~ 218 (455)
T KOG0231|consen 140 PTGDTYEGEFKRGKRSGFGVYIRSDGLKYEGEWLDNRRHGYGVLTFPDGS-KYEGQYKNNILEALRHGKGRYKFDDALEA 218 (455)
T ss_pred CCCCEEEeeecCCcccccceEEecCCCEeeceecCCCccCCCeEEccCCC-EEEEEeecccccccccceEEEEEeccchh
Confidence 34455566788999999999999999999999999999999999999999 999999999 5 8999999885
Q ss_pred ------CCEEEeeEec-eEEEeeEEEEe-CCeEEEEEEECCeecceEEEEECCCCcEEEEEEcCCeEeeeEEEEecC
Q psy2919 89 ------GSAYEGQWQN-GKRHGLGVESR-GRWIYRGEWTQGFKGRYGVRQSSTSNAKYEGTWANGLQDGYGSETYAD 157 (158)
Q Consensus 89 ------g~~y~G~f~~-g~~~G~G~~~~-~g~~Y~G~~~~g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G~~~~~~ 157 (158)
..+|.++|.. .+.|+.+.+.. ++..|.+.|..+.+++.+.+.+++. ..|.|.|..+++++.+++.+.+
T Consensus 219 a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~~~~g~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~~~ 294 (455)
T KOG0231|consen 219 AQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAGVARGLAKLHFPNG-SGYVGEFKQDKKHGGGQFLFLN 294 (455)
T ss_pred hhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcCccccccceecccc-ccccCcceeccccCcceeeecc
Confidence 7889999988 88888888874 7788888888888888888888876 6688888888888887776654
No 7
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=98.06 E-value=7.5e-06 Score=42.69 Aligned_cols=21 Identities=52% Similarity=1.063 Sum_probs=13.7
Q ss_pred EEEEEEcCCeEeeeEEEEecC
Q psy2919 137 KYEGTWANGLQDGYGSETYAD 157 (158)
Q Consensus 137 ~y~G~w~~g~~~G~G~~~~~~ 157 (158)
+|+|.|.++++||.|+++++|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 466666666666666666654
No 8
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=98.03 E-value=1e-05 Score=42.13 Aligned_cols=23 Identities=43% Similarity=0.840 Sum_probs=19.4
Q ss_pred CEEEEEEeCCeEeeEEEEEccCC
Q psy2919 44 GTYCGGWEDGKAHGHGVCTGPKG 66 (158)
Q Consensus 44 ~~Y~G~~~~g~~~G~G~~~~~~g 66 (158)
++|+|+|+++++||.|++++++.
T Consensus 1 ~~Y~G~w~~g~~hG~G~~~~~d~ 23 (26)
T smart00698 1 DRYEGEWRNGKRHGRGVYTYANX 23 (26)
T ss_pred CeEEEEEECCeEEeeEEEEeccc
Confidence 36899999999999999988765
No 9
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.90 E-value=1.5e-05 Score=40.10 Aligned_cols=22 Identities=55% Similarity=1.066 Sum_probs=17.4
Q ss_pred EEEEEeCCeEeeEEEEEccCCC
Q psy2919 46 YCGGWEDGKAHGHGVCTGPKGQ 67 (158)
Q Consensus 46 Y~G~~~~g~~~G~G~~~~~~g~ 67 (158)
|+|+|++++++|.|++++++++
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 7888888888888888888875
No 10
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=97.88 E-value=1.1e-05 Score=40.61 Aligned_cols=21 Identities=57% Similarity=1.243 Sum_probs=14.0
Q ss_pred EEEEEcCCeEeeeEEEEecCC
Q psy2919 138 YEGTWANGLQDGYGSETYADG 158 (158)
Q Consensus 138 y~G~w~~g~~~G~G~~~~~~G 158 (158)
|+|.|.+++++|.|+++++||
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G 21 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDG 21 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS
T ss_pred CEEEEEECcccccEEEEeCCC
Confidence 566777777777777777665
No 11
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.0043 Score=48.74 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=51.5
Q ss_pred EEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCE-EEeeEeceEEEeeEEEEe-CC-eEEEEEEEC
Q psy2919 45 TYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSA-YEGQWQNGKRHGLGVESR-GR-WIYRGEWTQ 120 (158)
Q Consensus 45 ~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~-y~G~f~~g~~~G~G~~~~-~g-~~Y~G~~~~ 120 (158)
...-.++|++++|.-...++++...-+-.+.+++ +|.-...+++|.. .+..|+++.++|.-+.+. +| ..-+=.+++
T Consensus 99 ~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~kn 178 (230)
T COG2849 99 EAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKN 178 (230)
T ss_pred EEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccC
Confidence 3444445555555544445555444444444443 4555555554433 345555555433333332 22 344445555
Q ss_pred CeecceEEEEECCCCcEEEEEEcCCeEeeeE
Q psy2919 121 GFKGRYGVRQSSTSNAKYEGTWANGLQDGYG 151 (158)
Q Consensus 121 g~~~G~G~~~~~~~~~~y~G~w~~g~~~G~G 151 (158)
|+++|.-...+.++..+.+..|++++.+|.=
T Consensus 179 G~~~G~~k~Y~enGkl~~e~~~kng~~~G~~ 209 (230)
T COG2849 179 GKKNGVVKIYYENGKLVEEVTYKNGKLDGVV 209 (230)
T ss_pred CcccceEEEEccCCCEeEEEEecCCcccccE
Confidence 5555555555555544455555555555443
No 12
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.033 Score=43.77 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=102.5
Q ss_pred ccccCCeeeeeEEEEECCCCEE-EEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCE-EEeeEeceEE
Q psy2919 25 TAFSAKTHVNGGRFDFDDGGTY-CGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSA-YEGQWQNGKR 101 (158)
Q Consensus 25 ~~~~~~~~~G~G~~~~~~g~~Y-~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~-y~G~f~~g~~ 101 (158)
..+.++++++.-...+++|..- +-.+.+++++|.-+..++++...++..|+++. .|.-...+++|.+ -+-.+++|++
T Consensus 102 ~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy~nGkl~~e~~~knG~~ 181 (230)
T COG2849 102 IYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYYENGKLLSEVPYKNGKK 181 (230)
T ss_pred EEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEcCCCcEEEeecccCCcc
Confidence 4567888888888888888755 56678999999999999999999999999998 8988999999866 4568899999
Q ss_pred EeeEEEEe-CC-eEEEEEEECCeecceEEEEECCCCcEEEEEEcCCe
Q psy2919 102 HGLGVESR-GR-WIYRGEWTQGFKGRYGVRQSSTSNAKYEGTWANGL 146 (158)
Q Consensus 102 ~G~G~~~~-~g-~~Y~G~~~~g~~~G~G~~~~~~~~~~y~G~w~~g~ 146 (158)
+|.-+.+. ++ ...+..|+++.++|.-.....+++.+-+..+.+++
T Consensus 182 ~G~~k~Y~enGkl~~e~~~kng~~~G~~~~yde~G~~i~~~~y~~g~ 228 (230)
T COG2849 182 NGVVKIYYENGKLVEEVTYKNGKLDGVVKEYDEAGKLIKETLYKNGK 228 (230)
T ss_pred cceEEEEccCCCEeEEEEecCCcccccEEEEecCCCEEEEEEeeCCc
Confidence 99999885 44 78999999999999998888887677777777765
No 13
>PF07617 DUF1579: Protein of unknown function (DUF1579); InterPro: IPR011473 This is a family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Rhizobium meliloti and Agrobacterium tumefaciens, amongst others.
Probab=35.98 E-value=90 Score=23.08 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEEEEe-CCeEeeEEEEEccCCCEEEEEEEecCe
Q psy2919 45 TYCGGWE-DGKAHGHGVCTGPKGQGAYSGAWHYGF 78 (158)
Q Consensus 45 ~Y~G~~~-~g~~~G~G~~~~~~g~~~y~G~~~~g~ 78 (158)
.|+|... -...++.+++-+.+....|++.|.+.+
T Consensus 52 e~~g~~~~g~~~~~~~~lGYD~~~~~yvgtWidSM 86 (159)
T PF07617_consen 52 EYEGSMPGGGPFEGIGTLGYDPAKKKYVGTWIDSM 86 (159)
T ss_pred EEEeecCCCCceEEEEEEEECCccCeEEEEEeccC
Confidence 3555555 455566666666665556666666664
No 14
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=31.24 E-value=1.3e+02 Score=21.58 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.9
Q ss_pred EEEEECCCCEEEEEEeCCeEeeEEEEEccCC
Q psy2919 36 GRFDFDDGGTYCGGWEDGKAHGHGVCTGPKG 66 (158)
Q Consensus 36 G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g 66 (158)
+.+.+.||.+|+|...-....-.|.+++..+
T Consensus 3 a~LvLeDG~~f~G~~~G~~~~~~GEvVFnT~ 33 (131)
T PF00988_consen 3 AYLVLEDGTVFEGKSFGAPGTVTGEVVFNTG 33 (131)
T ss_dssp EEEEETTS-EEEEEE-SBSEEEEEEEEEE--
T ss_pred EEEEECCCCEEEEEEecCCCcEEEEEEEEcc
Confidence 5678899999999998777777888887655
No 15
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=27.06 E-value=76 Score=14.43 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=7.1
Q ss_pred EEEEEccCCCEEEEEEE
Q psy2919 58 HGVCTGPKGQGAYSGAW 74 (158)
Q Consensus 58 ~G~~~~~~g~~~y~G~~ 74 (158)
.-+..+++|....++.+
T Consensus 4 ~~~~yy~nG~l~~~~~y 20 (22)
T PF07661_consen 4 EWKFYYENGKLKSEGHY 20 (22)
T ss_pred eEEEEeCCCCEEEEEEE
Confidence 33444444444444333
No 16
>PF07617 DUF1579: Protein of unknown function (DUF1579); InterPro: IPR011473 This is a family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Rhizobium meliloti and Agrobacterium tumefaciens, amongst others.
Probab=24.26 E-value=2.1e+02 Score=21.13 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=24.5
Q ss_pred EEEeeEe-ceEEEeeEEEEeC--CeEEEEEEECCeecc
Q psy2919 91 AYEGQWQ-NGKRHGLGVESRG--RWIYRGEWTQGFKGR 125 (158)
Q Consensus 91 ~y~G~f~-~g~~~G~G~~~~~--g~~Y~G~~~~g~~~G 125 (158)
.|+|... -...++.+++-+| ...|++.|.+.+..+
T Consensus 52 e~~g~~~~g~~~~~~~~lGYD~~~~~yvgtWidSM~t~ 89 (159)
T PF07617_consen 52 EYEGSMPGGGPFEGIGTLGYDPAKKKYVGTWIDSMGTG 89 (159)
T ss_pred EEEeecCCCCceEEEEEEEECCccCeEEEEEeccCCCc
Confidence 3566666 4566777777653 579999999986654
No 17
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1.
Probab=22.84 E-value=1.1e+02 Score=19.20 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=11.5
Q ss_pred EEEEECCCCEEEEEEe
Q psy2919 36 GRFDFDDGGTYCGGWE 51 (158)
Q Consensus 36 G~~~~~~g~~Y~G~~~ 51 (158)
-.....||..|+|-|.
T Consensus 15 V~V~~~~G~~yeGif~ 30 (77)
T PF14438_consen 15 VEVTTKNGSVYEGIFH 30 (77)
T ss_dssp EEEEETTS-EEEEEEE
T ss_pred EEEEECCCCEEEEEEE
Confidence 3466788999998885
Done!