Query psy2919
Match_columns 158
No_of_seqs 116 out of 1532
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 20:58:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 100.0 6.4E-28 2.2E-32 193.5 15.7 117 40-158 2-127 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.9 1.7E-25 5.9E-30 179.4 16.9 125 23-148 8-140 (293)
3 2f69_A Histone-lysine N-methyl 99.1 6.2E-11 2.1E-15 93.5 5.3 52 26-77 4-57 (261)
4 2f69_A Histone-lysine N-methyl 99.0 4.8E-10 1.6E-14 88.4 5.4 54 47-101 2-59 (261)
5 2eqj_A Metal-response element- 20.6 61 0.0021 19.6 2.1 37 37-74 21-58 (66)
6 2xk0_A Polycomb protein PCL; t 20.5 98 0.0034 18.8 3.0 36 37-74 23-58 (69)
7 2m0o_A PHD finger protein 1; t 17.5 1.2E+02 0.0039 19.0 2.9 44 31-75 27-72 (79)
8 2xdp_A Lysine-specific demethy 14.1 2.8E+02 0.0096 18.7 4.5 14 38-51 73-86 (123)
9 2e5q_A PHD finger protein 19; 10.8 2.9E+02 0.0099 16.4 3.7 39 37-76 15-54 (63)
10 2ovs_A L0044, ORF10; global re 10.8 1.4E+02 0.0048 20.1 2.0 21 69-89 14-36 (118)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.96 E-value=6.4e-28 Score=193.55 Aligned_cols=117 Identities=22% Similarity=0.230 Sum_probs=85.2
Q ss_pred ECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCC-EEEeeEeceEEEeeEEEEe-CCeEEEE
Q psy2919 40 FDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGS-AYEGQWQNGKRHGLGVESR-GRWIYRG 116 (158)
Q Consensus 40 ~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~-~y~G~f~~g~~~G~G~~~~-~g~~Y~G 116 (158)
|+||++|+|+|+++++||.|++++++++ +|+|+|++++ ||.|++.+++|+ +|+|+|+++++||.|++++ ++.+|+|
T Consensus 2 ~~~G~~Y~G~~~~g~~~G~G~~~~~~G~-~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G 80 (293)
T 1h3i_A 2 FFDGSTLEGYYVDDALQGQGVYTYEDGG-VLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80 (293)
T ss_dssp CSSSCCCCEEEETTEEEEEEEEECTTSC-EEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEE
T ss_pred cCCCCEEEEEEECCEeeEEEEEEECCCC-EEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEE
Confidence 5677777777777777777777777777 7777777774 777777777777 6777777777777777774 6677777
Q ss_pred EEE-CCeecce-EEEEECCCCc-EEEEEEcCCeEe-eeEEEE--ecCC
Q psy2919 117 EWT-QGFKGRY-GVRQSSTSNA-KYEGTWANGLQD-GYGSET--YADG 158 (158)
Q Consensus 117 ~~~-~g~~~G~-G~~~~~~~~~-~y~G~w~~g~~~-G~G~~~--~~~G 158 (158)
+|+ ++++||. |+++++++ . +|+|.|++++++ |.+++. ++||
T Consensus 81 ~~~~~g~~~G~gG~~~~~~G-~~~y~G~~~~g~~~~G~~~~~~~~~~g 127 (293)
T 1h3i_A 81 EVNEDGEMTGEKIAYVYPDE-RTALYGKFIDGEMIEGKLATLMSTEEG 127 (293)
T ss_dssp ECCTTSCSCEEEEEEECTTS-SEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred EEeECCeEeCCeEEEEECCC-CEEEEEEEECCEEEccceEEEEecCCc
Confidence 777 7777777 77777776 5 577777777777 777766 4443
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.94 E-value=1.7e-25 Score=179.39 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=116.4
Q ss_pred cCccccCCeeeeeEEEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEEecCe-eeeEEEEcCCCCEEEeeEe-ceE
Q psy2919 23 TGTAFSAKTHVNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGF-EVSGVYIWPSGSAYEGQWQ-NGK 100 (158)
Q Consensus 23 ~~~~~~~~~~~G~G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~~~g~-~G~G~~~~~~g~~y~G~f~-~g~ 100 (158)
+-..|.+++++|.|++.++||.+|+|+|+++++||.|++++++++.+|+|+|++++ +|.|++.++||++|+|+|+ +++
T Consensus 8 Y~G~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~~~~~g~ 87 (293)
T 1h3i_A 8 LEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGEVNEDGE 87 (293)
T ss_dssp CCEEEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEECCTTSC
T ss_pred EEEEEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEEEeECCe
Confidence 34468999999999999999999999999999999999999999878999999995 9999999999999999999 999
Q ss_pred EEee-EEEEe-CCe-EEEEEEECCeec-ceEEEE--ECCCCcEEEEEEcCCeEe
Q psy2919 101 RHGL-GVESR-GRW-IYRGEWTQGFKG-RYGVRQ--SSTSNAKYEGTWANGLQD 148 (158)
Q Consensus 101 ~~G~-G~~~~-~g~-~Y~G~~~~g~~~-G~G~~~--~~~~~~~y~G~w~~g~~~ 148 (158)
+||. |+++. ++. .|+|+|++++++ |.+++. .+++ ..+.+.|.+++..
T Consensus 88 ~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~g-~~~~g~w~~g~~~ 140 (293)
T 1h3i_A 88 MTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEG-RPHFELMPGNSVY 140 (293)
T ss_dssp SCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTTT-SCEEEECSSCCEE
T ss_pred EeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCCc-ceEEeEEcCCceE
Confidence 9999 99985 787 699999999999 999998 6776 9999999988763
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.10 E-value=6.2e-11 Score=93.54 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=36.6
Q ss_pred cccCCeeeeeEEEEECCCCEEEEEEe-CCeEeeE-EEEEccCCCEEEEEEEecC
Q psy2919 26 AFSAKTHVNGGRFDFDDGGTYCGGWE-DGKAHGH-GVCTGPKGQGAYSGAWHYG 77 (158)
Q Consensus 26 ~~~~~~~~G~G~~~~~~g~~Y~G~~~-~g~~~G~-G~~~~~~g~~~y~G~~~~g 77 (158)
.++++++||.|.++++||++|+|+|. ++++||. |++++|+++..|+|+|+++
T Consensus 4 ~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g 57 (261)
T 2f69_A 4 GYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDG 57 (261)
T ss_dssp -------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETT
T ss_pred eecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCC
Confidence 46778888888888888888888888 8888888 8888888883388888888
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.97 E-value=4.8e-10 Score=88.41 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=43.2
Q ss_pred EEEEeCCeEeeEEEEEccCCCEEEEEEEe-cC-eeee-EEEEcCCCCE-EEeeEeceEE
Q psy2919 47 CGGWEDGKAHGHGVCTGPKGQGAYSGAWH-YG-FEVS-GVYIWPSGSA-YEGQWQNGKR 101 (158)
Q Consensus 47 ~G~~~~g~~~G~G~~~~~~g~~~y~G~~~-~g-~~G~-G~~~~~~g~~-y~G~f~~g~~ 101 (158)
.|+|+++++||.|++++|+|+ +|+|+|. ++ ++|. |+++|+|+.+ |+|+|+++.+
T Consensus 2 ~g~~~~~~~~G~g~~~~~dG~-~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYYPDGG-SLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59 (261)
T ss_dssp ---------CCCEEEECTTSC-EEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred CceecCCceecceEEEeCCCC-EEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCcE
Confidence 389999999999999999999 9999999 88 5999 9999999999 9999999876
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.62 E-value=61 Score=19.62 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=24.3
Q ss_pred EEEECCCCEEEEEEeC-CeEeeEEEEEccCCCEEEEEEE
Q psy2919 37 RFDFDDGGTYCGGWED-GKAHGHGVCTGPKGQGAYSGAW 74 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~~-g~~~G~G~~~~~~g~~~y~G~~ 74 (158)
+-.|.||..|.|.++. ++..|..++.+-++. .+--.|
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s-~~w~~~ 58 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINILKQSCFIIFEDSS-KSWVLW 58 (66)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEETTTE-EEEEET
T ss_pred EEEEccCcEEEeEEEEEccCCcEEEEEEccCC-EEEEEe
Confidence 5678999999999862 333466677766665 443333
No 6
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=20.51 E-value=98 Score=18.84 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=24.0
Q ss_pred EEEECCCCEEEEEEeCCeEeeEEEEEccCCCEEEEEEE
Q psy2919 37 RFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAW 74 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g~~~y~G~~ 74 (158)
..+|.||..|-|.+.+.. .....+.+.+.+ .+--.|
T Consensus 23 L~rw~DG~fYLGtIVd~~-~~~ClV~FeD~S-~~Wv~~ 58 (69)
T 2xk0_A 23 FIKCNDGRFYLGTIIDQT-SDQYLIRFDDQS-EQWCEP 58 (69)
T ss_dssp EEECTTSCEEEEEEEEEC-SSCEEEEETTCC-EEEECT
T ss_pred EEEecCCCEEEEEEEecC-CceEEEEecCCc-ceeeeH
Confidence 367999999999996533 345666666665 443333
No 7
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=17.51 E-value=1.2e+02 Score=18.98 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=27.2
Q ss_pred eeeeeEEEE-ECCCCEEEEEEeC-CeEeeEEEEEccCCCEEEEEEEe
Q psy2919 31 THVNGGRFD-FDDGGTYCGGWED-GKAHGHGVCTGPKGQGAYSGAWH 75 (158)
Q Consensus 31 ~~~G~G~~~-~~~g~~Y~G~~~~-g~~~G~G~~~~~~g~~~y~G~~~ 75 (158)
...|.-++. |.||..|-|.++. ++......+.+-+++ .+--.|+
T Consensus 27 f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S-~~W~~~k 72 (79)
T 2m0o_A 27 LWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDS-QFLVLWK 72 (79)
T ss_dssp CCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSC-EEEEETT
T ss_pred eccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCC-eEEEEee
Confidence 334555555 8999999999872 222335667766666 4444443
No 8
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=14.07 E-value=2.8e+02 Score=18.67 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=7.2
Q ss_pred EEECCCCEEEEEEe
Q psy2919 38 FDFDDGGTYCGGWE 51 (158)
Q Consensus 38 ~~~~~g~~Y~G~~~ 51 (158)
..|.||.+|.+.|.
T Consensus 73 V~W~DG~~y~a~f~ 86 (123)
T 2xdp_A 73 VKWPDGKLYGAKYF 86 (123)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEcCCCCEEeEEEe
Confidence 44555555555554
No 9
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.81 E-value=2.9e+02 Score=16.38 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred EEEECCCCEEEEEEeC-CeEeeEEEEEccCCCEEEEEEEec
Q psy2919 37 RFDFDDGGTYCGGWED-GKAHGHGVCTGPKGQGAYSGAWHY 76 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~~-g~~~G~G~~~~~~g~~~y~G~~~~ 76 (158)
...|.||..|-|.++. +.......+.+-+++ .+--.|++
T Consensus 15 LarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s-~~wv~~kd 54 (63)
T 2e5q_A 15 LCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNS-KYWVLWKD 54 (63)
T ss_dssp EEECTTSCEEEEEECCCCSTTSEEEEEETTSC-EEEEEGGG
T ss_pred EEEecCCCEEEEEEEEEecCCCEEEEEEccCc-eeEEEeec
Confidence 4567999999999863 333345677776766 55544443
No 10
>2ovs_A L0044, ORF10; global regulator protein type three secretion system, gene regulation, ligand binding protein; HET: PG4; 1.90A {Escherichia coli} PDB: 3e3c_A*
Probab=10.79 E-value=1.4e+02 Score=20.12 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=11.0
Q ss_pred EEEEEEecC-e-eeeEEEEcCCC
Q psy2919 69 AYSGAWHYG-F-EVSGVYIWPSG 89 (158)
Q Consensus 69 ~y~G~~~~g-~-~G~G~~~~~~g 89 (158)
.|.=.|+.. . .|.|+....+|
T Consensus 14 iY~v~F~t~~~~~GeGvVvv~~G 36 (118)
T 2ovs_A 14 IYSIIFISNEDSCGEGILIKNGN 36 (118)
T ss_dssp EEEEEEEETTCCEEEEEEEESSS
T ss_pred EEEEEEECCCcCcccEEEEEECC
Confidence 555555555 2 35555555554
Done!