Query psy2919
Match_columns 158
No_of_seqs 116 out of 1532
Neff 7.8
Searched_HMMs 13730
Date Fri Aug 16 20:58:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2919.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2919hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f69a1 b.76.2.1 (A:116-193) H 81.3 2.4 0.00018 25.0 5.7 45 33-77 1-47 (78)
2 d2f69a1 b.76.2.1 (A:116-193) H 74.5 4.1 0.0003 24.0 5.2 45 56-101 1-49 (78)
3 d1a9xb1 c.8.3.1 (B:1502-1652) 24.0 80 0.0059 20.4 5.4 31 36-66 4-34 (151)
4 d2qqra2 b.34.9.1 (A:956-1011) 17.1 80 0.0058 17.0 4.4 14 38-51 10-23 (56)
5 d2cx1a2 d.17.6.4 (A:1-90) Hypo 5.6 1.5E+02 0.011 16.5 1.8 12 36-47 66-77 (90)
6 d1h641_ b.38.1.1 (1:) Archaeal 3.6 3.6E+02 0.026 14.1 2.5 15 37-51 16-30 (71)
7 d1mgqa_ b.38.1.1 (A:) Archaeal 3.5 3.8E+02 0.028 14.2 2.6 15 37-51 20-34 (74)
8 d1d3ba_ b.38.1.1 (A:) D3 core 3.4 3.8E+02 0.028 14.2 3.1 15 37-51 16-30 (72)
9 d1i4k1_ b.38.1.1 (1:) Archaeal 3.3 3.3E+02 0.024 14.4 2.2 15 37-51 17-31 (72)
10 d1th7a1 b.38.1.1 (A:3-78) Arch 3.0 4.4E+02 0.032 14.0 2.6 15 37-51 21-35 (76)
No 1
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.31 E-value=2.4 Score=25.05 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=30.8
Q ss_pred eeeEEEEECCCCEEEEEEe-CCeEeeEE-EEEccCCCEEEEEEEecC
Q psy2919 33 VNGGRFDFDDGGTYCGGWE-DGKAHGHG-VCTGPKGQGAYSGAWHYG 77 (158)
Q Consensus 33 ~G~G~~~~~~g~~Y~G~~~-~g~~~G~G-~~~~~~g~~~y~G~~~~g 77 (158)
+|...+.++||.+-.|+.- ++.+.|.- .+++|+++-.+.|.|.++
T Consensus 1 ~G~Cw~y~pdGGslvG~vne~gEmtGd~IAYvYPD~~talyGsF~dg 47 (78)
T d2f69a1 1 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDG 47 (78)
T ss_dssp CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETT
T ss_pred CceeEEEeCCCCEEEeeecCCCccccceEEEEcCCCeEEEEEEeecc
Confidence 3566677778877777774 66777654 345777776777777766
No 2
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.46 E-value=4.1 Score=24.01 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=33.6
Q ss_pred eeEEEEEccCCCEEEEEEEecC--eeeeEE-EEcCCCCE-EEeeEeceEE
Q psy2919 56 HGHGVCTGPKGQGAYSGAWHYG--FEVSGV-YIWPSGSA-YEGQWQNGKR 101 (158)
Q Consensus 56 ~G~G~~~~~~g~~~y~G~~~~g--~~G~G~-~~~~~g~~-y~G~f~~g~~ 101 (158)
||..-+++|++- ...|+..++ |.|.-+ ++++|+.+ +.|.|.++.+
T Consensus 1 ~G~Cw~y~pdGG-slvG~vne~gEmtGd~IAYvYPD~~talyGsF~dgem 49 (78)
T d2f69a1 1 HGVCWIYYPDGG-SLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 49 (78)
T ss_dssp CCCEEEECTTSC-EEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEE
T ss_pred CceeEEEeCCCC-EEEeeecCCCccccceEEEEcCCCeEEEEEEeeccce
Confidence 456667888887 888888776 677765 88888754 7888887654
No 3
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.97 E-value=80 Score=20.43 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=25.2
Q ss_pred EEEEECCCCEEEEEEeCCeEeeEEEEEccCC
Q psy2919 36 GRFDFDDGGTYCGGWEDGKAHGHGVCTGPKG 66 (158)
Q Consensus 36 G~~~~~~g~~Y~G~~~~g~~~G~G~~~~~~g 66 (158)
..+.+.||.+|+|...--...-.|.+++..+
T Consensus 4 a~L~LedG~~f~G~~~g~~~~~~GE~vFnT~ 34 (151)
T d1a9xb1 4 ALLVLEDGTQFHGRAIGATGSAVGEVVFNTS 34 (151)
T ss_dssp EEEEETTSCEEEEEECSCSEEEEEEEEEECC
T ss_pred EEEEeCCCCEEEEEecCCCcceeEEEEEEec
Confidence 5678899999999988767777888887665
No 4
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=80 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=10.4
Q ss_pred EEECCCCEEEEEEe
Q psy2919 38 FDFDDGGTYCGGWE 51 (158)
Q Consensus 38 ~~~~~g~~Y~G~~~ 51 (158)
.+|+||.+|...|.
T Consensus 10 VrW~DG~~y~A~f~ 23 (56)
T d2qqra2 10 VRWTDGQVYGAKFV 23 (56)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEcCCCCEEEEEEE
Confidence 56778887777776
No 5
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=5.58 E-value=1.5e+02 Score=16.54 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.9
Q ss_pred EEEEECCCCEEE
Q psy2919 36 GRFDFDDGGTYC 47 (158)
Q Consensus 36 G~~~~~~g~~Y~ 47 (158)
..|.|+||.+|-
T Consensus 66 clfewsdgriyp 77 (90)
T d2cx1a2 66 CLFEWSDGRIYP 77 (90)
T ss_dssp EEEECTTSCEEE
T ss_pred EEEEecCCcCcc
Confidence 467788888873
No 6
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=3.56 E-value=3.6e+02 Score=14.10 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=10.6
Q ss_pred EEEECCCCEEEEEEe
Q psy2919 37 RFDFDDGGTYCGGWE 51 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~ 51 (158)
...+.||..|.|.+.
T Consensus 16 ~V~lk~g~~~~G~L~ 30 (71)
T d1h641_ 16 LVILKKGFEFRGRLI 30 (71)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEEEcCCCEEEEEEE
Confidence 355678888887764
No 7
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.46 E-value=3.8e+02 Score=14.19 Aligned_cols=15 Identities=7% Similarity=0.167 Sum_probs=11.1
Q ss_pred EEEECCCCEEEEEEe
Q psy2919 37 RFDFDDGGTYCGGWE 51 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~ 51 (158)
...+.||..|.|.+.
T Consensus 20 ~V~lk~g~~~~G~L~ 34 (74)
T d1mgqa_ 20 IIKLKGDREFRGVLK 34 (74)
T ss_dssp EEEETTTEEEEEEEE
T ss_pred EEEECCCCEEEEEEE
Confidence 456788888888775
No 8
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=3.8e+02 Score=14.16 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=11.4
Q ss_pred EEEECCCCEEEEEEe
Q psy2919 37 RFDFDDGGTYCGGWE 51 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~ 51 (158)
...+.|+..|+|...
T Consensus 16 ~VeLkng~~~~G~L~ 30 (72)
T d1d3ba_ 16 TCETNTGEVYRGKLI 30 (72)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEEECCCeEEEEEEE
Confidence 456788888888874
No 9
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=3.33 E-value=3.3e+02 Score=14.39 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=11.0
Q ss_pred EEEECCCCEEEEEEe
Q psy2919 37 RFDFDDGGTYCGGWE 51 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~ 51 (158)
...+.||..|.|.++
T Consensus 17 ~V~lk~g~~~~G~L~ 31 (72)
T d1i4k1_ 17 IVRLKGGREFRGTLD 31 (72)
T ss_dssp EEEEGGGCEEEEEEE
T ss_pred EEEECCCCEEEEEEE
Confidence 355678888888775
No 10
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.96 E-value=4.4e+02 Score=13.99 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=11.4
Q ss_pred EEEECCCCEEEEEEe
Q psy2919 37 RFDFDDGGTYCGGWE 51 (158)
Q Consensus 37 ~~~~~~g~~Y~G~~~ 51 (158)
...+.||..|.|.+.
T Consensus 21 ~V~lk~g~~~~G~L~ 35 (76)
T d1th7a1 21 LVKLKGNKEVRGMLR 35 (76)
T ss_dssp EEEETTTEEEEEEEE
T ss_pred EEEECCCCEEEEEEE
Confidence 466788888888775
Done!