RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2919
(158 letters)
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 73.3 bits (180), Expect = 8e-16
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 31/150 (20%)
Query: 36 GRFDFDDGGTYCGGWEDGKAHGHGVCTGPKG---QGAYSGAWHYGFEVSGVYIWPSGSAY 92
G++ + DG Y G W G HG+G + P G +G +SG + +G SG Y G+ Y
Sbjct: 24 GKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHG---SGTYTGTDGTTY 80
Query: 93 EGQWQNGKRHGLGVES-------RGRWI-----------------YRGEWTQGFKGRYGV 128
+G+W+ +HGLG + G WI Y G+ G G
Sbjct: 81 KGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGT 140
Query: 129 RQSSTSNAKYEGTWANGLQDGYGSETYADG 158
+ S YEG W +G+ G+G T++DG
Sbjct: 141 -LTWVSGDSYEGQWLDGMMHGFGVYTWSDG 169
Score = 56.8 bits (137), Expect = 5e-10
Identities = 42/138 (30%), Positives = 53/138 (38%), Gaps = 29/138 (21%)
Query: 20 TGATGTAFSAKTHVNG----GRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWH 75
TG GT + + +N G + +G + G W G G G T G Y G
Sbjct: 73 TGTDGTTYKGRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGN-VYLGDMK 131
Query: 76 YG-FEVSGVYIWPSGSAYEGQWQNGKRHGLGVESRGRWIYRGEWTQGFKGRYGVRQSSTS 134
G G W SG +YEGQW +G HG GV + W+ G
Sbjct: 132 GGKMSGKGTLTWVSGDSYEGQWLDGMMHGFGVYT---------WSDG------------- 169
Query: 135 NAKYEGTWANGLQDGYGS 152
Y GTW GL+DG G
Sbjct: 170 -GCYVGTWTRGLKDGKGV 186
Score = 56.4 bits (136), Expect = 5e-10
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 70 YSGAWHYGF-EVSGVYIWPSGSAYEGQWQNGKRHGLGVESRGRW----IYRGEWTQGFKG 124
YSG+ E G Y+W G YEG+W+ G RHG G + W Y GE++ G+
Sbjct: 11 YSGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNG---KISWPSGATYEGEFSGGYMH 67
Query: 125 RYGVRQSSTSNAKYEGTWANGLQDGYGSETYADG 158
G + T Y+G W L+ G G + Y +G
Sbjct: 68 GSGT-YTGTDGTTYKGRWRLNLKHGLGYQRYPNG 100
>gnl|CDD|197832 smart00698, MORN, Possible plasma membrane-binding motif in
junctophilins, PIP-5-kinases and protein kinases.
Length = 22
Score = 31.5 bits (73), Expect = 0.013
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 92 YEGQWQNGKRHGLGV 106
YEG+W+NGKRHG GV
Sbjct: 3 YEGEWRNGKRHGRGV 17
Score = 28.8 bits (66), Expect = 0.11
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 136 AKYEGTWANGLQDGYGSETYAD 157
+YEG W NG + G G TYA+
Sbjct: 1 DRYEGEWRNGKRHGRGVYTYAN 22
>gnl|CDD|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 139
Score = 32.0 bits (73), Expect = 0.065
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 35 GGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYG-FEVSGVYIWPSGSAYE 93
+D G + GK G G G+ Y+G G G Y + +G YE
Sbjct: 23 LSTYDILGCARVGGSLKQGKLAGKGSLKYDNGR-IYTGTLKNGKMNGQGTYTFANGDIYE 81
Query: 94 GQWQNGKRHGLGV-ESRGRWIYRGEWTQG 121
G + +GK G G S W+Y G +T+G
Sbjct: 82 GPFNSGKFRGQGTRGSFNGWLYIGRFTEG 110
>gnl|CDD|222917 PHA02681, PHA02681, ORF089 virion membrane protein; Provisional.
Length = 92
Score = 31.2 bits (70), Expect = 0.075
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 5 AAVTSSPGGDPSPASTGATGTA---FSAKT 31
A VTSSP DP+PA + A FSA +
Sbjct: 62 ALVTSSPEDDPAPAPAAVSPVARNRFSAAS 91
>gnl|CDD|202256 pfam02493, MORN, MORN repeat. The MORN (Membrane Occupation and
Recognition Nexus) repeat is found in multiple copies in
several proteins including junctophilins (See Takeshima
et al. Mol. Cell 2000;6:11-22). A MORN-repeat protein
has been identified in the parasite Toxoplasma gondiis a
dynamic component of cell division apparatus in
Toxoplasma gondii. It has been hypothesised to functions
as a linker protein between certain membrane regions and
the parasite's cytoskeleton.
Length = 23
Score = 28.9 bits (66), Expect = 0.097
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 138 YEGTWANGLQDGYGSETYADG 158
YEG W NG + G G T+ DG
Sbjct: 1 YEGEWKNGKRHGKGVYTWPDG 21
Score = 28.9 bits (66), Expect = 0.12
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 46 YCGGWEDGKAHGHGVCTGPKG 66
Y G W++GK HG GV T P G
Sbjct: 1 YEGEWKNGKRHGKGVYTWPDG 21
Score = 28.5 bits (65), Expect = 0.17
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 92 YEGQWQNGKRHGLGVE 107
YEG+W+NGKRHG GV
Sbjct: 1 YEGEWKNGKRHGKGVY 16
>gnl|CDD|163690 cd08059, MPN_prok_mb, Mpr1p, Pad1p N-terminal (MPN) domains with
catalytic isopeptidase activity (metal-binding);
prokaryotic. This family contains bacterial and
archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB,
MPN+)-like domains. These catalytically active domains
contain the signature JAB1/MPN/Mov34 metalloenzyme
(JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc
ion coordination and provides the active site for
isopeptidase activity for the release of ubiquitin from
ubiquitinated proteins (thus having deubiquitinating
(DUB) activity) that are tagged for degradation. The
JAMM proteins likely hydrolyze ubiquitin conjugates in
a manner similar to thermolysin, in which the
zinc-polarized aqua ligand serves as the nucleophile,
compared with the classical DUBs that do so with a
cysteine residue in the active site.
Length = 101
Score = 26.0 bits (57), Expect = 5.0
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 1 MNAAAAVTSSPGGDPSPASTGATGTAFSAKTHV 33
M V S P G P+ + HV
Sbjct: 56 MKVVGLVHSHPSGSCRPSEADLSLFTRFGLYHV 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.134 0.447
Gapped
Lambda K H
0.267 0.0933 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,157,628
Number of extensions: 717422
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 27
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.6 bits)