RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2919
         (158 letters)



>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
           SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
          Length = 293

 Score = 69.0 bits (169), Expect = 6e-15
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 19/126 (15%)

Query: 36  GRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYG-FEVSGVYIWPSGSAYEG 94
           G + ++DGG   G + DG+ +G        G+  + G +            +P G +  G
Sbjct: 21  GVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVG 80

Query: 95  QW-QNGKRHGLGVE---SRGRWIYRGEWTQGFKGRYGVRQSSTSNAKYEGTWANGLQDGY 150
           +  ++G+  G  +       R    G++  G                 EG  A  +    
Sbjct: 81  EVNEDGEMTGEKIAYVYPDERTALYGKFIDG--------------EMIEGKLATLMSTEE 126

Query: 151 GSETYA 156
           G   + 
Sbjct: 127 GRPHFE 132



 Score = 64.0 bits (156), Expect = 4e-13
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 27/122 (22%)

Query: 40  FDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGFEVSGVYIWPSGSAYEGQWQNG 99
           F DG T  G + D    G GV                       Y +  G   +G + +G
Sbjct: 2   FFDGSTLEGYYVDDALQGQGV-----------------------YTYEDGGVLQGTYVDG 38

Query: 100 KRHGLGVE--SRGRWIYRGEWTQGFKGRYGVRQSSTSNAKYEGTW-ANGLQDGYGSETYA 156
           + +G   E  + GR I++G++    +                G    +G   G       
Sbjct: 39  ELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYP-DGGSLVGEVNEDGEMTGEKIAYVY 97

Query: 157 DG 158
             
Sbjct: 98  PD 99



 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 19/135 (14%)

Query: 36  GRFDFDDGGTYCGGW-EDGKAHGHGVCTGPKGQG-AYSGAWHYGFEVSGVYI-------- 85
               + DGG+  G   EDG+  G  +      +  A  G +  G  + G           
Sbjct: 68  CWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEEG 127

Query: 86  ------WPSGSAYEGQWQNGKRHGLGVESRGRWIYRGEWTQGFKGR---YGVRQSSTSNA 136
                  P  S Y                   +     +           G+        
Sbjct: 128 RPHFELMPGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGP 187

Query: 137 KYEGTWANGLQDGYG 151
               ++ NG++  + 
Sbjct: 188 NTVMSFYNGVRITHQ 202



 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 7/75 (9%), Positives = 11/75 (14%), Gaps = 3/75 (4%)

Query: 41  DDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGFEVSGVYI---WPSGSAYEGQWQ 97
                Y                    +             +G  +      G      + 
Sbjct: 135 PGNSVYHFDKSTSSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFY 194

Query: 98  NGKRHGLGVESRGRW 112
           NG R          W
Sbjct: 195 NGVRITHQEVDSRDW 209


>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7;
          SET domain, protein lysine methyltransferase, enzyme-
          peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
          sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
          3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
          4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
          Length = 261

 Score = 31.6 bits (71), Expect = 0.078
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 36 GRFDFDDGGTYCGGW-EDGKAHGHGVC-TGPKGQGAYSGAWHYGFEVSG 82
              + DGG+  G   EDG+  G  +    P  + A  G +  G  + G
Sbjct: 14 CWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEG 62


>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
           single-stranded DNA, isomerase/DNA complex; HET: DNA;
           2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
           2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
          Length = 659

 Score = 25.7 bits (57), Expect = 10.0
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 78  FEVSGVYIWPSGSAYEGQWQNGKRHGLGVESRGRWIYRGE 117
           FEV    + P+   +   WQ  +      +  GR ++R  
Sbjct: 222 FEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPL 261


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.134    0.447 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,717,047
Number of extensions: 162410
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 31
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.9 bits)