RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2919
         (158 letters)



>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 128

 Score = 25.8 bits (56), Expect = 1.9
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 6/97 (6%)

Query: 33  VNGGRFDFDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGFEVSGVYIWPSG--- 89
           +  G+           G E   A G  V     G  A    +    E             
Sbjct: 23  IKDGKIAMIGQNLEEKGAEVIDAKGCYVFPIVVGSDADLVIFDPNIERVISAETHHMAVD 82

Query: 90  -SAYEGQWQNGKRHGLGVESRGRWIYRGEWTQGFKGR 125
            +A+EG    G+     V  RG ++ R +   G  G 
Sbjct: 83  YNAFEGMKVTGEPV--SVLCRGEFVVRDKQFVGKPGY 117


>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
           {Escherichia coli [TaxId: 562]}
          Length = 144

 Score = 24.8 bits (54), Expect = 3.8
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)

Query: 40  FDDGGTYCGGWEDGKAHGHGVCTGPKGQGAYSGAWHYGFEVSGV 83
             DG  + G + +  A    +      QGA       G++   +
Sbjct: 67  CKDGRIFSGSYAENAAFNPTLPP---LQGALILLNLKGYDYPDI 107


>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase
          {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 24.6 bits (53), Expect = 5.4
 Identities = 9/50 (18%), Positives = 12/50 (24%), Gaps = 2/50 (4%)

Query: 50 WEDGKAHGHGVCTGPKGQGAYSGAWHYGFEVSGVYIWPSGSAYEGQWQNG 99
           E G     G              W +G    G  + P     +  WQ  
Sbjct: 43 TETGGNFDKGYVEAELDI--NPDLWFFGCHFIGDPVMPGCLGLDAMWQLV 90


>d1unaa_ d.85.1.1 (A:) GA coat protein {Bacteriophage GA [TaxId:
           12018]}
          Length = 129

 Score = 23.9 bits (51), Expect = 7.2
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 112 WIYRGEWTQGFKGRYGVRQSSTSNAKY 138
           W+     +Q ++     R S     KY
Sbjct: 31  WLSNNSRSQAYRVTASYRASGADKRKY 57


>d2bu1a1 d.85.1.1 (A:1-129) MS2 virus coat protein {Bacteriophage
           MS2 [TaxId: 12022]}
          Length = 129

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 112 WIYRGEWTQGFKGRYGVRQSSTSNAKY 138
           WI     +Q +K    VRQSS  N KY
Sbjct: 32  WISSNSRSQAYKVTCSVRQSSAQNRKY 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.134    0.447 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,667
Number of extensions: 32440
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 16
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.4 bits)