BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy292
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|P Chain P, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 445
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/443 (39%), Positives = 281/443 (63%), Gaps = 16/443 (3%)
Query: 12 VKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQI 71
+K + DY+ E+ P I A+ + A+D LL LEK+TR SD+ S+ +L IV +
Sbjct: 7 IKADKDYSQILKEEFPK-IDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 65
Query: 72 CFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEI--KVKLIETLRTV 129
W LNE +T+L+K+ QLK ++ MIQ+ + Y+ + S ++ ++ +IET+R V
Sbjct: 66 LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 125
Query: 130 TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMR 189
TE KI+VEVERAR+T L ++K++EG + EAA+I+ ELQVETYGSME EK+ ILEQM
Sbjct: 126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185
Query: 190 LCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249
L + K DY + ++S+KI K F + K + LKL+YY L++++ H+ YL ++ +
Sbjct: 186 LSILKGDYSQATVLSRKILKKTFKNPK--YESLKLEYYNLLVKISLHKREYLEVAQYLQE 243
Query: 250 ILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 309
I T I+SD + VL ++V +L+L+PY N Q+DL H++ D L ++ + L++ F
Sbjct: 244 IYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLF 303
Query: 310 TNPELIKWSGLRQLYEEELFKTSVFNQ-----STEEGQKCFKMLKHRVVEHNIRVMAKYY 364
T EL++W +++ YE V N+ E + ++ L+ RV+EHN+RV+++YY
Sbjct: 304 TTNELMRWPIVQKTYE------PVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYY 357
Query: 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA 424
+RITL R+ +LL L +TE ++S +V I AK++RPA I+NF + K+ ++LNEWS
Sbjct: 358 SRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSH 417
Query: 425 SLNELMKLVNNTTHLINKEQMIH 447
+++EL++ + HLI KE+++H
Sbjct: 418 NVDELLEHIETIGHLITKEEIMH 440
>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain
Length = 84
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406
+L V+EHN+ +K Y IT + + LL +P + E+ S M+ + ID+ GI
Sbjct: 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70
Query: 407 INFARNKDPG 416
++F + G
Sbjct: 71 VHFETREASG 80
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 523
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 303 KGLLQWFTNPELIKWSGLRQL------YEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHN 356
K LL ++ + +K L++ Y++ L K + Q C + L+ V++
Sbjct: 340 KSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-------QLCVR-LRSNVIKTG 391
Query: 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-SKTITAKIDRPAGII------NF 409
IR+++ Y +I+L+ +C L L E+T E++ S + I AKI+ G I N
Sbjct: 392 IRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNI 451
Query: 410 ARNKDPGEILNEWSASLNEL 429
++DP ++ +E N+L
Sbjct: 452 YDSEDPQQVFDERIKFANQL 471
>pdb|1K8D|A Chain A, Crystal Structure Of The Non-Classical Mhc Class Ib Qa-2
Complexed With A Self Peptide
Length = 274
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 30 IKMAAEGKFHDAIDSLLALEKQTRTGS---------DMVSTGRILVAIVQICFEAKNWTA 80
I E F ++ + + Q++ GS DM S GR+L +Q +E +++ A
Sbjct: 66 IAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIA 125
Query: 81 LNEHITMLT 89
LNE + T
Sbjct: 126 LNEDLKTWT 134
>pdb|3A4Z|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A50|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A51|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
Length = 411
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEF--LSSMVVSKTITAKIDRPA 404
+L + + +M +Y +I +Q +C+LLGLP E+ ++F SS++V D PA
Sbjct: 125 LLAGLPTDGPVDLMREYAFQIPVQVICELLGLPAEDRDDFSAWSSVLVD-------DSPA 177
Query: 405 GIINFARNK 413
N A K
Sbjct: 178 DDKNAAMGK 186
>pdb|3TXM|A Chain A, Crystal Structure Of Rpn6 From Drosophila Melanogaster,
Gd(3+) Complex
pdb|3TXN|A Chain A, Crystal Structure Of Rpn6 From Drosophila Melanogaster,
Native Data
Length = 394
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 352 VVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407
++E N+ + + Y+R+ + + + + LP+ + E+ LS M++ K + +D+ G++
Sbjct: 302 MLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVL 357
>pdb|3A4G|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Trigonal Crystal Form)
pdb|3A4H|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Orthorhombic Crystal Form)
Length = 411
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEF--LSSMVVSKTITAKIDRPA 404
+L + + +M +Y +I +Q +C+LLG+P E+ ++F SS++V D PA
Sbjct: 125 LLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRDDFSAWSSVLVD-------DSPA 177
Query: 405 GIINFARNK 413
N A K
Sbjct: 178 DDKNAAMGK 186
>pdb|2DYP|A Chain A, Crystal Structure Of Lilrb2(Lir2ILT4CD85D) COMPLEXED WITH
Hla-G
Length = 277
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 55 GSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT 89
G D+ S GR+L Q ++ K++ ALNE + T
Sbjct: 101 GCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWT 135
>pdb|2D31|A Chain A, Crystal Structure Of Disulfide-Linked Hla-G Dimer
pdb|2D31|D Chain D, Crystal Structure Of Disulfide-Linked Hla-G Dimer
Length = 276
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 55 GSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT 89
G D+ S GR+L Q ++ K++ ALNE + T
Sbjct: 100 GCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWT 134
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 35 EGKFHDAI---DSLLALEKQTRTGSD-----MVSTGRILVAIVQICFEAKNWTALNEHIT 86
+G + +A+ D L+ + Q G ++ G AI Q+C + +T+ EH+
Sbjct: 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI-QMCQQGLRYTSTAEHVA 75
Query: 87 MLTK--RRSQLKQAVVKMIQECVTYVDKTP 114
+ +K R +L Q V +Q V VD+ P
Sbjct: 76 IRSKLQYRLELAQGAVGSVQIPVVEVDELP 105
>pdb|3FRV|A Chain A, Structure Of Human Chmp3 (Residues 1-150)
Length = 152
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 405 GIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQ 444
G+ + K P E++NEWS + + M++V+ I +E+
Sbjct: 4 GLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREE 43
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 85 ITMLTKRRSQLKQAVVKMIQECVTYVDKT-----PSKEIKVKLIETLRTVTEGKIYVEVE 139
I ++ ++ +K+ + +E V+ VDK +EI +K +E LR+ E
Sbjct: 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREI-IKRLEALRS----------E 52
Query: 140 RARLTHILAKMKEDEGDVTEAANIIQELQVE 170
R +L+ + K+K + D TE N ++EL+ E
Sbjct: 53 RNKLSKEIGKLKREGKDTTEIQNRVKELKEE 83
>pdb|3HLZ|A Chain A, Crystal Structure Of Bt_1490 (Np_810393.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.50 A
Resolution
pdb|3HLZ|B Chain B, Crystal Structure Of Bt_1490 (Np_810393.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.50 A
Resolution
Length = 269
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIY-VEVERARLTHILAKMKEDEGDVTEAANI 163
EC V K S + ++I TL EG+ Y E+ RL+ I + +EG + +
Sbjct: 109 ECSFTVPKGGSAKEAEEVIATLEARKEGEKYPAELIPVRLSEI---YQINEGYEWVVSTV 165
Query: 164 IQELQVETYGSMEKKEKVTLILEQMRLCLAKKD 196
QEL+ + G E EK+ +++ ++ KKD
Sbjct: 166 KQELKKDFQGVEEDLEKIQQVIDSGKISPKKKD 198
>pdb|3FRT|A Chain A, The Structure Of Human Chmp3 (Residues 8 - 222).
pdb|3FRT|B Chain B, The Structure Of Human Chmp3 (Residues 8 - 222)
Length = 218
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 413 KDPGEILNEWSASLNELMKLVNNTTHLINKEQ 444
K P E++NEWS + + M++V+ I +E+
Sbjct: 6 KPPKELVNEWSLKIRKEMRVVDRQIRDIQREE 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,500,421
Number of Sequences: 62578
Number of extensions: 491481
Number of successful extensions: 1502
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 33
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)