BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy292
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/454 (64%), Positives = 360/454 (79%), Gaps = 14/454 (3%)
Query: 5 DGGT----GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVS 60
DGG+ GRIVKMEVDY+PT D+++P K+A EG+ + I++LL+LEKQTRT SDMVS
Sbjct: 3 DGGSERADGRIVKMEVDYSPTVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62
Query: 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKV 120
T RILVA+V++C+EAK W LNE+I +L+KRRSQLKQAV KM+Q+C TYV++ IK+
Sbjct: 63 TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122
Query: 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180
+LI+TLR VTEGKIYVE+ERARLT LA +KE GDV EAA+I+QELQVETYGSMEKKE+
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182
Query: 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240
V ILEQMRLCLA KDYIRTQIISKKINTKFF +E + ++LKLKYY LMI+LDQHEGSY
Sbjct: 183 VEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE--NTEKLKLKYYNLMIQLDQHEGSY 240
Query: 241 LATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300
L+ CKHYRAI TPCIQ++ + L++VVLY++LAP+DNEQSDL HR+ DK L EIP
Sbjct: 241 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP 300
Query: 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFK-------TSVFNQSTEEGQKCFKMLKHRVV 353
YK LL+ FT EL++WS L + Y EL K T VF STEEG+K +K LK+RVV
Sbjct: 301 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVV 359
Query: 354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413
EHNIR+MAKYYTRIT++RM LL L ++E+E FLS++VV+KTI AK+DR AGIINF R K
Sbjct: 360 EHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPK 419
Query: 414 DPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447
DP +LN+WS LN LM LVN TTHLI KE+MIH
Sbjct: 420 DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/454 (64%), Positives = 359/454 (79%), Gaps = 14/454 (3%)
Query: 5 DGGT----GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVS 60
DGG+ GRIVKMEVDY+ T D+++P K+A EG+ + I++LL+LEKQTRT SDMVS
Sbjct: 3 DGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62
Query: 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKV 120
T RILVA+V++C+EAK W LNE+I +L+KRRSQLKQAV KM+Q+C TYV++ IK+
Sbjct: 63 TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122
Query: 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180
+LI+TLR VTEGKIYVE+ERARLT LA +KE GDV EAA+I+QELQVETYGSMEKKE+
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182
Query: 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240
V ILEQMRLCLA KDYIRTQIISKKINTKFF +E + ++LKLKYY LMI+LDQHEGSY
Sbjct: 183 VEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE--NTEKLKLKYYNLMIQLDQHEGSY 240
Query: 241 LATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300
L+ CKHYRAI TPCIQ++ + L++VVLY++LAP+DNEQSDL HR+ DK L EIP
Sbjct: 241 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP 300
Query: 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFK-------TSVFNQSTEEGQKCFKMLKHRVV 353
YK LL+ FT EL++WS L + Y EL K T VF STEEG+K +K LK+RVV
Sbjct: 301 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-STEEGEKRWKDLKNRVV 359
Query: 354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413
EHNIR+MAKYYTRIT++RM LL L ++E+E FLS++VV+KTI AK+DR AGIINF R K
Sbjct: 360 EHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPK 419
Query: 414 DPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447
DP +LN+WS LN LM LVN TTHLI KE+MIH
Sbjct: 420 DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 585 bits (1509), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/454 (64%), Positives = 358/454 (78%), Gaps = 14/454 (3%)
Query: 5 DGGT----GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVS 60
DGG+ GRIVKMEVDY+ T D+++P K+A EG+ + I++LL+LEKQTRT SDMVS
Sbjct: 3 DGGSERADGRIVKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62
Query: 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKV 120
T RILVA+V++C+EAK W LNE+I +L+KRRSQLKQAV KM+Q+C TYV++ +K+
Sbjct: 63 TSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKL 122
Query: 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180
+LI+TLR VTEGKIYVE+ERARLT LA +KE GDV EAA+I+QELQVETYGSMEKKE+
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182
Query: 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240
V ILEQMRLCLA KDYIRTQIISKKINTKFF +E + + LKLKYY LMI+LDQHEGSY
Sbjct: 183 VEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE--NTENLKLKYYNLMIQLDQHEGSY 240
Query: 241 LATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300
L+ CKHYRAI TPCIQ++ + L++VVLY++LAP+DNEQSDL HR+ DK L EIP
Sbjct: 241 LSICKHYRAIYDTPCIQAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIP 300
Query: 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFK-------TSVFNQSTEEGQKCFKMLKHRVV 353
YK LL+ FT EL++WS L + Y EL K T VF+ STEEG+K +K LK RVV
Sbjct: 301 KYKDLLKLFTTMELMRWSTLVEDYGVELRKGSSETPATDVFS-STEEGEKRWKDLKSRVV 359
Query: 354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413
EHNIR+MAKYYTRIT++RM LL L ++E+E FLS++VV+KTI AK+DR AG+INF R K
Sbjct: 360 EHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPK 419
Query: 414 DPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447
DP +LN+WS LN LM LVN TTHLI KE+MIH
Sbjct: 420 DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/454 (64%), Positives = 358/454 (78%), Gaps = 14/454 (3%)
Query: 5 DGGT----GRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVS 60
DGG+ GRIVKMEVDY+ T D+++P K+A EG+ + I++LL+LEKQTRT SDMVS
Sbjct: 3 DGGSERADGRIVKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVS 62
Query: 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKV 120
T RILVAIV++C+EAK W LNE+I +L+KRRSQLKQAV KM+Q+C TYV++ IK+
Sbjct: 63 TSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKL 122
Query: 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180
+LI+TLR VTEGKIYVE+ERARLT LA +KE GDV EAA+I+QELQVETYGSMEKKE+
Sbjct: 123 RLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKER 182
Query: 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240
V ILEQMRLCLA KDYIRTQIISKKINTKFF +E + ++LKLKYY LMI+LDQHEGSY
Sbjct: 183 VEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEE--NTEKLKLKYYNLMIQLDQHEGSY 240
Query: 241 LATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300
L+ CKHYRAI TPCIQ++ + L++VVLY++LAP+DNEQSDL HR+ DK L EIP
Sbjct: 241 LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP 300
Query: 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFK-------TSVFNQSTEEGQKCFKMLKHRVV 353
YK LL+ FT EL++WS L + Y EL K T VF TEEG+K +K LK+RVV
Sbjct: 301 KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFG-YTEEGEKRWKDLKNRVV 359
Query: 354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413
EHNIR+MAKYYTRIT++RM LL L ++E+E FLS++VV+KTI AK+DR AGIINF R K
Sbjct: 360 EHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPK 419
Query: 414 DPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447
DP +LN+WS LN LM LVN TTHLI KE+MIH
Sbjct: 420 DPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 453
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/436 (43%), Positives = 286/436 (65%), Gaps = 6/436 (1%)
Query: 13 KMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQIC 72
KME D +P D+ ++A GK +AI++LL EKQ R D ST +I I+++C
Sbjct: 16 KMEQDLSPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLC 75
Query: 73 FEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEG 132
+EA +NE + +L+KRR QL+ A+ ++QE + YVD+ + K++LI+TLRT+++G
Sbjct: 76 YEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDG 135
Query: 133 KIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCL 192
KI+VE ERARLT L+K+KEDEGD+ AA I+Q+LQVETYG+MEK+EK+T ++QMR+C+
Sbjct: 136 KIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICM 195
Query: 193 AKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252
KD+IR Q+I K+N K +D+ Q+LK+ Y++ MI H +Y+ + Y +I
Sbjct: 196 NNKDFIRAQLIGNKVNRKTL--AEDENQDLKIDYFKQMIRYFSHSANYIEIARCYLSIYD 253
Query: 253 TPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNP 312
TP ++ D Q L+ + +Y++L+ NEQSDL +RV E K L +I YK LL F
Sbjct: 254 TPSVEKDTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLTDIQNYKDLLNQFKTL 313
Query: 313 ELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRM 372
ELI+WS +L + EL +VF TE ++ L+ RV+EHNIRV++ YY +I+ R+
Sbjct: 314 ELIRWSTFFELNKPELDSQTVF--KTEPN--AWEDLRKRVIEHNIRVISTYYQKISTARL 369
Query: 373 CDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKL 432
+LL L ++E+E+F+S +V +KTI AKIDRPAGI F DP ++LN W+ ++ L+ L
Sbjct: 370 AELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTTNDPNKVLNAWANNITSLLDL 429
Query: 433 VNNTTHLINKEQMIHQ 448
V T HL+ +E M+H+
Sbjct: 430 VEKTNHLVQREFMLHK 445
>sp|Q9UTM3|RPN5_SCHPO 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1
Length = 443
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/413 (43%), Positives = 264/413 (63%), Gaps = 5/413 (1%)
Query: 42 IDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK 101
++ LL EKQ R SD + ++L+ I + F A ++ LNE + L K+ QLKQ++
Sbjct: 32 LEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTS 91
Query: 102 MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAA 161
++Q +TY+ + K+ LIETLRT+T+GKIYVEVERARLT +L+++KE++GD+ A
Sbjct: 92 LVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQ 151
Query: 162 NIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221
I+ VETYGS + KEKV IL+Q+RL L + DY +KKIN KFF EK+DVQ
Sbjct: 152 EILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFF--EKEDVQS 209
Query: 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDN 281
LKLKYY I + H+ +YL CK+YRA+ T +Q DP + +L+NVV + +L PYDN
Sbjct: 210 LKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILENVVCFALLTPYDN 269
Query: 282 EQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEG 341
EQ+DL HR+ D LN +PL + L++ F EL++W + ++Y L VF ++ E+G
Sbjct: 270 EQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSNPVFAENDEKG 329
Query: 342 QKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401
+K + L+ RV+EHNIRV+A YY+RI R+ LL + ETE+FL ++ AKID
Sbjct: 330 EKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDLIAKHHFYAKID 389
Query: 402 RPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM---IHQRVA 451
RPA +I+F ++++ E LNEW +++ EL+ + LI KE+M I Q VA
Sbjct: 390 RPAQVISFKKSQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMNSIQQAVA 442
>sp|Q12250|RPN5_YEAST 26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN5 PE=1 SV=3
Length = 445
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/443 (39%), Positives = 281/443 (63%), Gaps = 16/443 (3%)
Query: 12 VKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQI 71
+K + DY+ E+ P I A+ + A+D LL LEK+TR SD+ S+ +L IV +
Sbjct: 7 IKADKDYSQILKEEFPK-IDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDL 65
Query: 72 CFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEI--KVKLIETLRTV 129
W LNE +T+L+K+ QLK ++ MIQ+ + Y+ + S ++ ++ +IET+R V
Sbjct: 66 LASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVV 125
Query: 130 TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMR 189
TE KI+VEVERAR+T L ++K++EG + EAA+I+ ELQVETYGSME EK+ ILEQM
Sbjct: 126 TENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185
Query: 190 LCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249
L + K DY + ++S+KI K F + K + LKL+YY L++++ H+ YL ++ +
Sbjct: 186 LSILKGDYSQATVLSRKILKKTFKNPK--YESLKLEYYNLLVKISLHKREYLEVAQYLQE 243
Query: 250 ILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 309
I T I+SD + VL ++V +L+L+PY N Q+DL H++ D L ++ + L++ F
Sbjct: 244 IYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLF 303
Query: 310 TNPELIKWSGLRQLYEEELFKTSVFNQ-----STEEGQKCFKMLKHRVVEHNIRVMAKYY 364
T EL++W +++ YE V N+ E + ++ L+ RV+EHN+RV+++YY
Sbjct: 304 TTNELMRWPIVQKTYE------PVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYY 357
Query: 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA 424
+RITL R+ +LL L +TE ++S +V I AK++RPA I+NF + K+ ++LNEWS
Sbjct: 358 SRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSH 417
Query: 425 SLNELMKLVNNTTHLINKEQMIH 447
+++EL++ + HLI KE+++H
Sbjct: 418 NVDELLEHIETIGHLITKEEIMH 440
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 164/385 (42%), Gaps = 37/385 (9%)
Query: 52 TRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVD 111
T TG +++ R+ V + +NEH++++ R +++ + + +
Sbjct: 42 TNTGQELIDGLRLFVEAI-----------VNEHVSLVISR---------QILNDVGSELS 81
Query: 112 KTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVET 171
K P K+ TL V I E + A + LA + E +AA ++ + +ET
Sbjct: 82 KLPDDLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLET 141
Query: 172 YGSMEKKE-KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 230
E K+ L+ RL L D ++ ++ IN + + +EL++ Y
Sbjct: 142 GQKQYSVECKLGTYLKIARLYLEDNDSVQAELF---INRASLLQAETNSEELQVLYKVCY 198
Query: 231 IELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRV 290
+ + ++ + Y + + D +R L+ ++ +LA ++S + +
Sbjct: 199 ARVLDYRRKFIEAAQRYNELSYRKIV--DQGERMTALKKALICTVLASAGQQRSRMLATL 256
Query: 291 LEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKH 350
+D+ +P Y G+L+ +I+ S L++ E L + +T +G +L
Sbjct: 257 FKDERCQHLPAY-GILEKMYLERIIRRSELQEF--EALLQDHQ-KAATSDGSS---ILDR 309
Query: 351 RVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410
V EHN+ +K Y IT + + LL +P + E+ S M+ + ID+ + I++F
Sbjct: 310 AVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQISAIVHF- 368
Query: 411 RNKDPGEILNEWSASLNELMKLVNN 435
+ E+L +W + L VN+
Sbjct: 369 ---ENRELLPQWDRQIQSLCYQVNS 390
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/356 (19%), Positives = 145/356 (40%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + T++ P K TL V I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEVYHFTLEKVQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E E D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHES 220
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 221 --ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 332 AAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + T++ P K TL + I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E E D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHES 220
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 221 --ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 332 AAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/358 (19%), Positives = 146/358 (40%), Gaps = 26/358 (7%)
Query: 79 TALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEV 138
+ +NE+++++ R +++ + T++ P K TL + I E
Sbjct: 51 SMVNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEE 101
Query: 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDY 197
+ A + LA + E E D AA ++ + +ET + K+ L+ RL L D
Sbjct: 102 QVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDP 161
Query: 198 IRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQ 257
++ + IN + ++L++ Y + + ++ + Y + +
Sbjct: 162 VQAEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVH 218
Query: 258 SDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKW 317
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+
Sbjct: 219 ES--ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRG 275
Query: 318 SGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLG 377
+ L++ F + +L V+EHN+ +K Y IT + + LL
Sbjct: 276 NQLQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLE 329
Query: 378 LPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+P + E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 330 IPAAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + T++ P K TL + I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E E D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHES 220
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 221 --ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 332 AAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + T++ P K TL + I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E E D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHES 220
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 221 --ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 332 AAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + T++ P K TL + I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E E D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHES 220
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 221 --ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 332 AAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 145/356 (40%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + T++ P K TL + I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E E D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASVRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHES 220
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 221 --ERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F + E L W + L VNN
Sbjct: 332 AAKAEKIASQMITEGRMNGFIDQIDGIVHF----ETREALPTWDKQIQSLCFQVNN 383
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/356 (19%), Positives = 146/356 (41%), Gaps = 26/356 (7%)
Query: 81 LNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140
+NE+++++ R +++ + ++ P KV TL + I E +
Sbjct: 53 VNENVSLVISR---------QLLTDFCAHLPNLPDDIAKVVCHFTLEKIQPRVISFEEQV 103
Query: 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE-KVTLILEQMRLCLAKKDYIR 199
A + LA + E + D AA ++ + +ET + K+ L+ RL L D ++
Sbjct: 104 ASIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYKLDTYLKIARLYLEDDDPVQ 163
Query: 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259
+ IN + ++L++ Y + + ++ + Y + +
Sbjct: 164 AEAY---INRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKSIVHE- 219
Query: 260 PIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG 319
+R L++ + +LA ++S + + +D+ ++ Y G+L+ +I+ +
Sbjct: 220 -TERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAY-GILEKMYLDRIIRGNQ 277
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP 379
L++ F + +L V+EHN+ +K Y IT + + LL +P
Sbjct: 278 LQE------FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP 331
Query: 380 IEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNN 435
+ E+ S M+ + ID+ GI++F ++P L W + L VNN
Sbjct: 332 PAKAEKIASQMITEGRMNGFIDQIDGIVHF-ETREP---LPTWDKQIQSLCFQVNN 383
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406
+LK + EHNI +++ Y I+ + + LLG+ E E M+ S+ + ID+ GI
Sbjct: 311 ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGI 370
Query: 407 INFARNKDPGEILNEWSASLNELMKLVNNTTHLI 440
++F + +P + W + + ++ +N + +I
Sbjct: 371 LHF-EDSNPMRV---WDSQILSTLEQINKVSDMI 400
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406
+L V+EHN+ +K Y IT + LL + E+ E+ S MV + + ID+ +
Sbjct: 295 VLDRAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERL 354
Query: 407 INFARNKDPGEILNEWSASLNELMKLVNNTTHLINK 442
I F ++ G+ L +W + L +NN I+K
Sbjct: 355 IQF---ENVGDSLTQWDKKIEGLCIHMNNIIESISK 387
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 144/361 (39%), Gaps = 28/361 (7%)
Query: 99 VVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGK-IYVEVERARLTHILAKMKEDEGDV 157
+ I + Y + S E ++K+ + + + + VE + A++ ILA E E +
Sbjct: 62 AARPILDSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQIREILADAYEAEEEY 121
Query: 158 TEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK 216
AA +Q + +++ + KV L + +RL L + D + +I K +
Sbjct: 122 IAAARALQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAFLNRI--KNLPSKI 179
Query: 217 DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI-LTTPCIQSDPIQRHAVLQNVVLYLM 275
+D ELKL + + +L + Y A+ L +SD +Q L + +
Sbjct: 180 ED-HELKLHFRLSQARIQDARRRFLDASQEYFAVSLAAGVDESDRLQ---ALAAAIRCAV 235
Query: 276 LAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEEL--FKTSV 333
LAP ++S + +D + + L + F + R L EE+ F +
Sbjct: 236 LAPAGPQRSRTLATLYKDDRATSVEEFGILEKMFLD---------RLLTPEEVSAFAQRL 286
Query: 334 FNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPI-------EETEEF 386
+ +L VVEHN+ +K Y I + +LGL E+ E +
Sbjct: 287 APHQLAQTADGTTVLDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAEAY 346
Query: 387 LSSMVVSKTITAKIDRPAGIINFARNKDP-GEILNEWSASLNELMKLVNNTTHLINKEQM 445
+ MV ++ ID+ GII F N G + +W A + L + V I + +
Sbjct: 347 AARMVEQGRLSGSIDQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATNIAEGHL 406
Query: 446 I 446
+
Sbjct: 407 V 407
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406
+L ++EHN+ +K YT I + LL + + E+ ++M+ + ID+ +
Sbjct: 298 VLDRAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAV 357
Query: 407 INFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM 445
I+F +D E L +W ++ L + +N+ + K+ M
Sbjct: 358 IHF---EDDVEELQQWDQQISGLCQALNDILDGMAKKGM 393
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 303 KGLLQWFTNPELIKWSGLRQL------YEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHN 356
K LL ++ + +K L++ Y++ L K + Q C + L+ V++
Sbjct: 340 KSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-------QLCVR-LRSNVIKTG 391
Query: 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-SKTITAKIDRPAGII------NF 409
IR+++ Y +I+L+ +C L L E+T E++ S + I AKI+ G I N
Sbjct: 392 IRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNI 451
Query: 410 ARNKDPGEILNEWSASLNEL 429
++DP ++ +E N+L
Sbjct: 452 YDSEDPQQVFDERIKFANQL 471
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 46/84 (54%)
Query: 352 VVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411
++E N+ + + ++R+ + + +L+GLP++ E+ LS M++ K +D+ AG +
Sbjct: 326 LLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQMILDKKFAGTLDQGAGCLIIFE 385
Query: 412 NKDPGEILNEWSASLNELMKLVNN 435
+ I + ++ + K+V++
Sbjct: 386 DPKADAIYSATLETIANMGKVVDS 409
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 12/266 (4%)
Query: 146 ILAKMKEDEGDVTEAANIIQELQVETYGS-MEKKEKVTLILEQMRLCLAKKDYIRTQIIS 204
+LA E + T+AA + + +++ + K K L + +R L D +
Sbjct: 126 LLAAAHESQNSFTDAAKTLAAIPLDSSQRRVTDKYKADLWIRIIRNYLEDDDATSAETYL 185
Query: 205 KKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRH 264
K+ + DD L L + + +LA + Y I +P I + +R
Sbjct: 186 NKLK-NIIHNVADDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISLSPAIAEE--ERL 242
Query: 265 AVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLY 324
L + +LAP +S + R+ +D+ + + L + F + L +
Sbjct: 243 HTLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFGILEKMFLDRLLAR-------A 295
Query: 325 EEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL-PIEET 383
E E F + +L +VEHN+ +++ Y I + LGL +
Sbjct: 296 EVEKFAQGLAPHQLATTSDGSTVLAKAMVEHNLLAVSRLYRNIGFDALGSWLGLDSGNKA 355
Query: 384 EEFLSSMVVSKTITAKIDRPAGIINF 409
EE + M+ + ID+ II F
Sbjct: 356 EEITARMIEQGRLAGSIDQIDRIIYF 381
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 348 LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFL-SSMVVSKTITAKIDRPAGI 406
L+H V++ +R+++ Y+RI+L+ +C LGL EE+ E++ + + I A ID
Sbjct: 361 LRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAEYIVAKGIRDGVIDASIDHSNAF 420
Query: 407 I 407
+
Sbjct: 421 M 421
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG--IINFARNKDPGEILNE 421
YTR TL + + + + E ++ LS +++ K + AKID+ +G ++ A + + + E
Sbjct: 370 YTRFTLSFISKHIKISVTEAQDILSFLILDKKLNAKIDQESGTVVVESASDVERLRSVEE 429
Query: 422 WSASLNELMKLV 433
W+ SL L ++
Sbjct: 430 WNESLRTLWQVT 441
>sp|A4R796|EIF3E_MAGO7 Eukaryotic translation initiation factor 3 subunit E OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=INT6 PE=3 SV=1
Length = 446
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 326 EELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEE 385
EE+ +T F S G +H E ++ A RI L+R+ + LGL ++E E+
Sbjct: 338 EEVLRTDFFLMSI--GDSFVDAARHLFFESYCKIHA----RIDLKRLSEQLGLNVDEGEK 391
Query: 386 FLSSMVVSKTITAKIDRPAGII 407
++ +++ + AKID G +
Sbjct: 392 WIVNLIRDTRLDAKIDFQEGTV 413
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411
Y +TLQ M + G+ +E ++ L+ + + + AK+DR GI+ R
Sbjct: 311 YRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNR 358
>sp|Q9T014|SPA2_ARATH Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2
Length = 1036
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 270 VVLYLMLAPYDNEQ------SDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQL 323
++LY +L+ + E+ SD+ HR+L K L+E P G W +PE R +
Sbjct: 485 ILLYELLSQFQCERAREAAMSDIRHRILPPKFLSENPKEAGFCLWLLHPESSCRPSTRDI 544
Query: 324 YEEEL 328
+ E+
Sbjct: 545 LQSEV 549
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 295 LLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKH-RVV 353
++N+ P + LLQ F N + + G + + + +G + + +H R
Sbjct: 242 VINDTPKLQDLLQSFYNGDYANFFGALAHFSDSI-----------KGDRY--LAEHSRFF 288
Query: 354 EHNIRVMA-----KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIIN 408
+R++A + Y+ + L+ M + G+ + + LS V + + KID+ +G+I
Sbjct: 289 TREMRILAYNQFLESYSSVKLESMSNQFGVSYDFIDRELSRFVAAGRLNCKIDKVSGVIE 348
Query: 409 FARNKDPGEILNEWSASLNELMKLVNNTTHLIN 441
R+ + + L+ V + +IN
Sbjct: 349 TTRSDAKNHLYKTTLQQGDNLLNRVQKLSRVIN 381
>sp|P0CN46|EIF3C_CRYNJ Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=NIP1 PE=3 SV=1
Length = 885
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 347 MLKHRVVEHNIRV----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402
+L ++ E +R A YY ++L + LP+ +S M+ + + A +D+
Sbjct: 726 ILAKKIQEEGLRTSLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQ 785
Query: 403 PAGIINFAR 411
G++ F R
Sbjct: 786 IDGVVIFHR 794
>sp|P0CN47|EIF3C_CRYNB Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=NIP1 PE=3 SV=1
Length = 885
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 347 MLKHRVVEHNIRV----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402
+L ++ E +R A YY ++L + LP+ +S M+ + + A +D+
Sbjct: 726 ILAKKIQEEGLRTSLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQ 785
Query: 403 PAGIINFAR 411
G++ F R
Sbjct: 786 IDGVVIFHR 794
>sp|A1ZAX1|EIF3C_DROME Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
melanogaster GN=eIF3-S8 PE=1 SV=1
Length = 910
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 340 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 395
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 396 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 441
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVGMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|B4HMY3|EIF3C_DROSE Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
sechellia GN=eIF3-S8 PE=3 SV=1
Length = 910
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 340 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 395
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 396 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 441
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVGMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/214 (17%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 240 YLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEI 299
Y + ++ ++T P I A + +++YL+ T V++ + +
Sbjct: 190 YKKAIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQHFPKCTPAVVQRNIKSHC 249
Query: 300 PLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRV 359
Y +Q F+N + + + F + + G K+ NI+
Sbjct: 250 KPYTEFVQSFSN------GNINDIMNKASSGAEFFQKDSNWG--LVKLSIKSTYRRNIKK 301
Query: 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEIL 419
+ + + +++ + + + LP + E+F+ M+ I A I++ G++ F E
Sbjct: 302 LTQTFMTLSINDIAEKVSLPKAKAEQFVLKMIEEGEIFATINQKDGMVTF------DECF 355
Query: 420 NEWSAS--LNELMKLVNNTTHLINKEQMIHQRVA 451
++S LN+L + +NN L +K + + ++++
Sbjct: 356 EDFSGPTILNDLDRNINNIVGLESKIKEMDEKIS 389
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 290 VLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKM-- 347
+ E K+ + L + L +F + ++ L++ E + F Q F +
Sbjct: 305 IPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLVNFGEQFRQD-----HTFTLII 359
Query: 348 -LKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-SKTITAKIDRPAG 405
L+H V++ IR + Y+RI+ Q + LGL E EF+ + + I A +D G
Sbjct: 360 RLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAIRDGVIEATLDPEKG 419
Query: 406 IINFARNKDPGEI 418
+ R+K+ +I
Sbjct: 420 ---YMRSKESTDI 429
>sp|A7TML4|EIF3C_VANPO Eukaryotic translation initiation factor 3 subunit C
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=NIP1 PE=3 SV=1
Length = 809
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNE 421
++Y++++++++ DL LP ++ E L +++ I A + +++ A+ + + L E
Sbjct: 728 RFYSKLSMKKLSDLFNLPEDKIVESLQAVITEYEIDASFNEDKSVLSIAKGAEITK-LEE 786
Query: 422 WSASLNELMKLVNNTTH 438
++ LN+ +K+ H
Sbjct: 787 VASKLNKEVKITKERLH 803
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 333 VFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV 392
+F +S K +K + + + YT I++ + ++ LP+++ +S M++
Sbjct: 735 LFYESDRVRDMLVKFIKEESLRTYLFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMII 794
Query: 393 SKTITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 441
++ + A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 795 NEELMASLDDPSETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 835
>sp|B2HZR3|SYGB_ACIBC Glycine--tRNA ligase beta subunit OS=Acinetobacter baumannii
(strain ACICU) GN=glyS PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 99 VVKMIQECVTYVDKTP-SKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDV 157
V ++Q K+P + +V + RT+ E + R+ +ILAK EG V
Sbjct: 542 AVDVLQAVQALAPKSPLDFDKRVNAVNHFRTLPEAAALAAANK-RVANILAKEAAPEGSV 600
Query: 158 TEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK-----FF 212
E AN++++ + + + + VT ++E + LA KDY T +SK + FF
Sbjct: 601 IE-ANLVEDAEKALFAEL---QAVTPVVEPL---LAAKDY--TAALSKLAALRAPIDAFF 651
Query: 213 DD---EKDDVQELKLKYYRLMIEL 233
D DD +LK RL+ +L
Sbjct: 652 DGVMVMADDA-DLKANRLRLLAQL 674
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 85/420 (20%), Positives = 166/420 (39%), Gaps = 100/420 (23%)
Query: 63 RILVAIVQICFEAKNWTAL-NEHITMLTKRRSQL-KQAVVKMIQECVTYVDKTPSKEIKV 120
+ L +++I F+ N+ + N + +LT RS + + K I + Y+ + ++
Sbjct: 68 KALKQMIKINFKLGNYPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQ 127
Query: 121 KLIET--------------LRTVTE-GKIYVEVER-ARLTHILAKMKE----DEG--DVT 158
+ ET +T T+ GK+Y+E E +L IL ++ + D+G D+
Sbjct: 128 EFYETTLDALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLK 187
Query: 159 EAANIIQ--ELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK 216
+ +++ L+++ Y + + +K+ + EQ L K I +I I
Sbjct: 188 KGTQLLEIYALEIQMYTAQKNNKKLKALYEQ---SLHIKSAIPHPLIMGVI--------- 235
Query: 217 DDVQELKLKYYRLMIELDQHEGSYLATCKHYR---AILTTPCIQSDPIQRHAVLQNVVLY 273
+E K + E ++ + K+Y + T C+ ++ VL N+++
Sbjct: 236 ---RECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL------KYLVLANMLMK 286
Query: 274 LMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333
+ P+D++ E YK +PE++ + L Y+
Sbjct: 287 SGINPFDSQ---------------EAKPYK------NDPEILAMTNLVSAYQ-------- 317
Query: 334 FNQSTEEGQKCFKMLKHRVV------EH------NIRV-----MAKYYTRITLQRMCDLL 376
N E +K K ++ EH NIR + K YTRI + + L
Sbjct: 318 -NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKEL 376
Query: 377 GLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGE---ILNEWSASLNELMKLV 433
+ + + E L ++ TI +ID+ ++ K G L++W+ LN L + V
Sbjct: 377 NIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAV 436
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 84/420 (20%), Positives = 166/420 (39%), Gaps = 100/420 (23%)
Query: 63 RILVAIVQICFEAKNWTAL-NEHITMLTKRRSQL-KQAVVKMIQECVTYVDKTPSKEIKV 120
+ L +++I F+ N+ + N + +LT RS + + K I + Y+ + ++
Sbjct: 70 KALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQ 129
Query: 121 KLIET--------------LRTVTE-GKIYVEVER-ARLTHILAKMKE----DEG--DVT 158
+ ET +T T+ GK+Y+E E +L IL ++ + D+G D+
Sbjct: 130 EFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEFGKLQKILRQLHQSCQTDDGEDDLK 189
Query: 159 EAANIIQ--ELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK 216
+ +++ L+++ Y + + +K+ + EQ L K I +I I
Sbjct: 190 KGTQLLEIYALEIQMYTAQKNNKKLKALYEQ---SLHIKSAIPHPLIMGVI--------- 237
Query: 217 DDVQELKLKYYRLMIELDQHEGSYLATCKHYR---AILTTPCIQSDPIQRHAVLQNVVLY 273
+E K + E ++ + K+Y + T C+ ++ VL N+++
Sbjct: 238 ---RECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCL------KYLVLANMLMK 288
Query: 274 LMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333
+ P+D++ E YK +PE++ + L Y+
Sbjct: 289 SGINPFDSQ---------------EAKPYKN------DPEILAMTNLVSAYQ-------- 319
Query: 334 FNQSTEEGQKCFKMLKHRVV------EH------NIRV-----MAKYYTRITLQRMCDLL 376
N E +K K ++ EH NIR + K YTRI + + L
Sbjct: 320 -NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKEL 378
Query: 377 GLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGE---ILNEWSASLNELMKLV 433
+ + + E L ++ TI +ID+ ++ K G L++W+ LN L + +
Sbjct: 379 NIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAI 438
>sp|A3M9C2|SYGB_ACIBT Glycine--tRNA ligase beta subunit OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=glyS PE=3 SV=2
Length = 689
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 20/144 (13%)
Query: 99 VVKMIQECVTYVDKTP-SKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDV 157
V ++Q K+P + +V + RT+ E + R+ +ILAK EG V
Sbjct: 542 AVDVLQAVQALAPKSPLDFDKRVNAVNHFRTLPEAAALAAANK-RVANILAKEAAPEGSV 600
Query: 158 TEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK-----FF 212
E AN++++ + + + + VT ++E + LA KDY T +SK + FF
Sbjct: 601 IE-ANLVEDAEKALFAEL---QAVTPVVEPL---LAAKDY--TAALSKLAALRAPIDAFF 651
Query: 213 DD---EKDDVQELKLKYYRLMIEL 233
D DD +LK RL+ +L
Sbjct: 652 DGVMVMADDA-DLKANRLRLLAQL 674
>sp|Q0ZB76|EIF3C_BOMMO Eukaryotic translation initiation factor 3 subunit C OS=Bombyx mori
GN=eIF3-S8 PE=2 SV=1
Length = 876
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 347 MLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402
ML + E ++R A Y ++L+ + D+ LP + +S M++++ + A +D
Sbjct: 737 MLGRLIREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDD 796
Query: 403 PAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA 452
P+ R+ +P + +++ LV++ + K+ QR A
Sbjct: 797 PSECAILHRS-EPTRMQALALQLADKVGNLVDSNERIFEKQGSFFQRGGA 845
>sp|Q1RJC6|SYE2_RICBR Glutamate--tRNA ligase 2 OS=Rickettsia bellii (strain RML369-C)
GN=gltX2 PE=3 SV=1
Length = 464
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 67 AIVQICFEAKNWTALN--EHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIE 124
A V+ F W LN + + +KR K+A +K++ E Y TP +EI+ + E
Sbjct: 54 AAVEAIFSGLKWLGLNWDDEVVFQSKRNDLYKEAALKLLAEGKAYYCFTPQEEIEKQRQE 113
Query: 125 TL 126
L
Sbjct: 114 AL 115
>sp|A8GX08|SYE2_RICB8 Glutamate--tRNA ligase 2 OS=Rickettsia bellii (strain OSU 85-389)
GN=gltX2 PE=3 SV=2
Length = 464
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 67 AIVQICFEAKNWTALN--EHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIE 124
A V+ F W LN + + +KR K+A +K++ E Y TP +EI+ + E
Sbjct: 54 AAVEAIFSGLKWLGLNWDDEVVFQSKRNDLYKEAALKLLAEGKAYYCFTPQEEIEKQRQE 113
Query: 125 TL 126
L
Sbjct: 114 AL 115
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 340 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 395
E + +ML + E ++R + YT I++ + + LP+++ +S M++++
Sbjct: 739 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVQKVHSIISKMIINEE 798
Query: 396 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 441
+ A +D P + R++ + L L M+ V+ T+L++
Sbjct: 799 LMASLDDPTETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 836
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 352 VVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407
++E N+ + + Y+R+ + + + + LP+ + E+ LS M++ K + +D+ G++
Sbjct: 330 MLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVL 385
>sp|B4P562|EIF3C_DROYA Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
yakuba GN=eIF3-S8 PE=3 SV=1
Length = 910
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 340 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 395
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 396 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 441
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|Q8IUG5|MY18B_HUMAN Unconventional myosin-XVIIIb OS=Homo sapiens GN=MYO18B PE=1 SV=1
Length = 2567
Score = 32.3 bits (72), Expect = 8.5, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 88 LTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARL---- 143
L K SQL+Q+ K + T T E + L +T K V+ + RL
Sbjct: 1833 LEKVHSQLEQSEAKCEEALKTQKVLTADLE---SMHSELENMTRNKSLVDEQLYRLQFEK 1889
Query: 144 THILAKMKEDEGDVTE------------AANI--IQELQVETYGSMEKKEKV--TLILEQ 187
+L ++ ED+ D+ E AA+I IQELQ++ + ++K K+ L + Q
Sbjct: 1890 ADLLKRIDEDQDDLNELMQKHKDLIAQSAADIGQIQELQLQLEEAKKEKHKLQEQLQVAQ 1949
Query: 188 MRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMI 231
MR+ ++ + I+S++ + K + Q++++K + +++
Sbjct: 1950 MRIEYLEQSTVDRAIVSRQEAVICDLENKTEFQKVQIKRFEVLV 1993
>sp|B3NML0|EIF3C_DROER Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
erecta GN=eIF3-S8 PE=3 SV=1
Length = 910
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 340 EGQKCFKMLKHRVVEHNIRVM----AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 395
E + +ML + E ++R + YT I++ + + LP+ + +S M++++
Sbjct: 737 ESDRVREMLTKFIKEESLRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEE 796
Query: 396 ITAKIDRPAGIINFARNKDPGEILNEWSASLNEL-MKLVNNTTHLIN 441
+ A +D P+ + R++ + L L M+ V+ T+L++
Sbjct: 797 LMASLDDPSETVVMHRSE---------PSRLQALAMQFVDKVTNLVD 834
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 356 NIRV-----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410
NIR + K YTRI + + L + + + E L ++ TI +ID+ ++
Sbjct: 353 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 412
Query: 411 RNKDPGE---ILNEWSASLNELMKLV 433
K G L++W+ LN L + V
Sbjct: 413 HQKRGGARYTALDKWTNQLNSLNQAV 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,038,363
Number of Sequences: 539616
Number of extensions: 6370687
Number of successful extensions: 19806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 19673
Number of HSP's gapped (non-prelim): 220
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)