Query psy292
Match_columns 452
No_of_seqs 198 out of 712
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:59:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1498|consensus 100.0 4E-104 9E-109 770.7 39.7 439 10-452 1-439 (439)
2 COG5071 RPN5 26S proteasome re 100.0 6.3E-88 1.4E-92 636.6 31.6 436 11-451 2-438 (439)
3 KOG1497|consensus 100.0 7.7E-52 1.7E-56 394.2 32.3 324 103-443 65-390 (399)
4 KOG1463|consensus 100.0 8.5E-50 1.8E-54 383.4 32.3 375 24-413 6-393 (411)
5 KOG1464|consensus 100.0 6.3E-47 1.4E-51 355.1 23.9 366 33-433 38-435 (440)
6 COG5159 RPN6 26S proteasome re 100.0 2.2E-43 4.8E-48 332.7 30.5 372 25-413 6-391 (421)
7 KOG0687|consensus 100.0 1E-33 2.2E-38 271.3 31.3 293 125-441 90-392 (393)
8 COG5187 RPN7 26S proteasome re 100.0 2.5E-27 5.5E-32 224.3 26.0 301 117-440 92-405 (412)
9 KOG2908|consensus 99.8 1.7E-15 3.7E-20 147.2 30.8 307 116-440 54-378 (380)
10 PF01399 PCI: PCI domain; Int 99.7 4.3E-16 9.3E-21 130.1 10.5 104 300-411 1-105 (105)
11 smart00753 PAM PCI/PINT associ 99.5 1.3E-13 2.9E-18 112.0 10.1 72 344-415 2-73 (88)
12 smart00088 PINT motif in prote 99.5 1.3E-13 2.9E-18 112.0 10.1 72 344-415 2-73 (88)
13 KOG2581|consensus 99.5 2.6E-11 5.7E-16 120.5 24.7 277 140-437 168-452 (493)
14 PF10602 RPN7: 26S proteasome 99.4 2.8E-12 6.2E-17 117.9 14.8 153 125-287 22-175 (177)
15 KOG0686|consensus 99.3 9.3E-11 2E-15 116.8 20.5 257 143-414 152-413 (466)
16 KOG2582|consensus 99.1 7E-08 1.5E-12 95.3 25.8 212 179-412 138-361 (422)
17 KOG2758|consensus 98.7 8.8E-05 1.9E-09 72.7 30.5 345 63-443 36-424 (432)
18 KOG1076|consensus 98.6 3.7E-05 8.1E-10 81.7 27.6 71 344-414 692-766 (843)
19 KOG2753|consensus 98.0 0.0038 8.2E-08 61.7 23.5 179 232-423 170-361 (378)
20 PF14938 SNAP: Soluble NSF att 97.5 0.073 1.6E-06 52.5 25.4 187 57-250 30-222 (282)
21 KOG2688|consensus 97.3 0.0029 6.3E-08 64.5 12.3 206 188-413 170-386 (394)
22 PF14938 SNAP: Soluble NSF att 97.2 0.29 6.2E-06 48.3 25.6 220 24-250 36-263 (282)
23 PF10255 Paf67: RNA polymerase 97.0 0.1 2.2E-06 54.0 20.6 45 344-388 295-343 (404)
24 COG5600 Transcription-associat 97.0 0.061 1.3E-06 54.2 18.2 241 155-414 144-406 (413)
25 KOG1840|consensus 96.8 0.16 3.4E-06 54.3 19.8 187 62-254 199-397 (508)
26 TIGR03302 OM_YfiO outer membra 96.7 0.25 5.3E-06 46.8 19.6 184 20-210 31-232 (235)
27 PRK11788 tetratricopeptide rep 96.7 0.91 2E-05 46.1 30.8 204 27-253 40-243 (389)
28 KOG2003|consensus 96.7 0.19 4.1E-06 51.9 18.6 205 25-265 422-633 (840)
29 PF09976 TPR_21: Tetratricopep 96.6 0.2 4.2E-06 44.1 16.8 132 24-207 13-144 (145)
30 TIGR02917 PEP_TPR_lipo putativ 96.6 1.1 2.5E-05 49.8 26.7 62 23-90 23-84 (899)
31 PRK11788 tetratricopeptide rep 96.5 1.1 2.4E-05 45.5 24.6 96 143-253 216-311 (389)
32 PF09976 TPR_21: Tetratricopep 96.5 0.42 9E-06 42.0 18.1 114 120-250 31-144 (145)
33 KOG2072|consensus 96.4 2.2 4.7E-05 47.3 36.5 69 343-411 424-493 (988)
34 TIGR02917 PEP_TPR_lipo putativ 96.2 3 6.4E-05 46.5 26.9 204 27-254 572-800 (899)
35 PF10075 PCI_Csn8: COP9 signal 96.0 0.047 1E-06 48.3 9.0 83 297-390 39-121 (143)
36 PRK10747 putative protoheme IX 95.9 0.96 2.1E-05 46.9 20.1 201 29-252 160-389 (398)
37 COG3071 HemY Uncharacterized e 95.9 2.4 5.1E-05 43.4 21.7 199 25-254 156-358 (400)
38 TIGR00540 hemY_coli hemY prote 95.8 0.87 1.9E-05 47.3 19.0 203 29-253 160-366 (409)
39 PF13525 YfiO: Outer membrane 95.5 1.6 3.5E-05 40.7 18.0 169 24-198 7-195 (203)
40 COG4105 ComL DNA uptake lipopr 95.3 2.9 6.4E-05 40.5 20.3 182 17-205 29-228 (254)
41 PRK10866 outer membrane biogen 94.7 4.3 9.2E-05 39.2 20.5 178 24-207 34-238 (243)
42 PRK11447 cellulose synthase su 94.6 7.2 0.00016 46.3 23.8 205 28-253 467-700 (1157)
43 TIGR02521 type_IV_pilW type IV 94.6 3.5 7.5E-05 37.4 18.1 173 57-253 26-198 (234)
44 COG3063 PilF Tfp pilus assembl 94.5 1.9 4.2E-05 41.2 15.1 139 138-295 32-171 (250)
45 COG2956 Predicted N-acetylgluc 94.4 6.1 0.00013 39.7 21.9 192 35-253 48-243 (389)
46 TIGR02795 tol_pal_ybgF tol-pal 94.4 1.1 2.4E-05 36.8 12.2 103 144-255 5-107 (119)
47 KOG2003|consensus 94.2 8.1 0.00018 40.4 19.8 200 35-272 503-702 (840)
48 PF09012 FeoC: FeoC like trans 94.1 0.11 2.5E-06 39.8 5.2 48 357-404 5-52 (69)
49 KOG1840|consensus 94.0 10 0.00022 40.7 23.2 218 29-251 248-477 (508)
50 TIGR00990 3a0801s09 mitochondr 93.6 9.1 0.0002 42.0 20.9 101 144-252 436-536 (615)
51 PF13429 TPR_15: Tetratricopep 93.4 0.46 9.9E-06 46.4 9.4 195 25-250 11-209 (280)
52 TIGR00990 3a0801s09 mitochondr 93.3 9.3 0.0002 41.9 20.4 188 37-254 309-497 (615)
53 PRK10049 pgaA outer membrane p 93.1 7.6 0.00016 43.9 19.5 203 32-255 247-458 (765)
54 PLN03218 maturation of RBCL 1; 93.0 23 0.0005 41.6 28.0 97 145-252 546-642 (1060)
55 PLN03218 maturation of RBCL 1; 92.6 26 0.00057 41.2 27.3 55 30-89 480-534 (1060)
56 PRK11447 cellulose synthase su 92.3 30 0.00065 41.2 32.5 105 142-255 182-334 (1157)
57 KOG1586|consensus 92.1 12 0.00025 36.1 18.4 103 145-250 58-160 (288)
58 PF09756 DDRGK: DDRGK domain; 92.1 0.34 7.3E-06 44.9 5.8 81 358-440 105-187 (188)
59 TIGR02521 type_IV_pilW type IV 91.8 9.6 0.00021 34.4 23.0 195 24-249 33-228 (234)
60 PF08784 RPA_C: Replication pr 91.8 0.22 4.8E-06 41.3 3.9 37 366-402 65-101 (102)
61 PRK14574 hmsH outer membrane p 91.7 11 0.00024 42.9 18.5 99 142-256 103-201 (822)
62 PF12569 NARP1: NMDA receptor- 91.5 23 0.0005 38.2 22.8 212 25-252 7-256 (517)
63 KOG1941|consensus 91.4 16 0.00034 37.5 17.0 236 24-275 8-297 (518)
64 cd00189 TPR Tetratricopeptide 91.2 4.8 0.0001 29.9 11.3 93 145-252 4-96 (100)
65 PRK10049 pgaA outer membrane p 91.1 31 0.00067 39.0 24.4 201 39-254 213-423 (765)
66 PRK02603 photosystem I assembl 90.9 3.2 6.9E-05 37.4 11.1 69 140-211 34-102 (172)
67 PF13424 TPR_12: Tetratricopep 90.7 2 4.4E-05 32.9 8.3 70 140-210 4-75 (78)
68 PF09295 ChAPs: ChAPs (Chs5p-A 90.2 3.3 7.2E-05 43.0 11.6 120 102-246 171-290 (395)
69 TIGR02795 tol_pal_ybgF tol-pal 90.1 6.5 0.00014 32.0 11.5 101 24-169 4-104 (119)
70 PF13424 TPR_12: Tetratricopep 90.1 2.7 5.8E-05 32.3 8.5 70 181-252 5-74 (78)
71 COG3107 LppC Putative lipoprot 89.8 3.6 7.8E-05 43.7 11.3 103 138-250 60-162 (604)
72 TIGR02552 LcrH_SycD type III s 89.4 12 0.00026 31.6 13.1 98 143-255 19-116 (135)
73 PRK14720 transcript cleavage f 89.3 47 0.001 38.3 20.5 153 42-212 9-180 (906)
74 PLN03081 pentatricopeptide (PP 89.1 21 0.00046 39.8 17.9 92 145-253 466-557 (697)
75 PF13432 TPR_16: Tetratricopep 88.3 1.8 3.9E-05 32.0 6.1 59 146-210 2-60 (65)
76 PF04733 Coatomer_E: Coatomer 87.5 31 0.00066 34.3 16.0 239 26-308 5-244 (290)
77 PF12895 Apc3: Anaphase-promot 87.1 5.3 0.00012 31.2 8.5 83 153-249 1-83 (84)
78 KOG2376|consensus 86.9 36 0.00078 36.9 16.5 150 27-208 84-251 (652)
79 PF04348 LppC: LppC putative l 86.7 0.2 4.4E-06 54.1 0.0 106 138-252 21-126 (536)
80 PRK15174 Vi polysaccharide exp 86.6 58 0.0013 36.2 19.6 97 142-253 285-381 (656)
81 PF10345 Cohesin_load: Cohesin 86.1 58 0.0013 35.8 20.1 129 125-260 43-175 (608)
82 PLN03081 pentatricopeptide (PP 86.0 62 0.0013 36.0 22.8 93 146-250 396-488 (697)
83 TIGR03504 FimV_Cterm FimV C-te 85.6 1.7 3.8E-05 30.4 4.3 40 144-185 2-41 (44)
84 KOG1070|consensus 84.4 65 0.0014 38.6 18.1 134 64-213 1532-1666(1710)
85 PF14559 TPR_19: Tetratricopep 84.3 2.1 4.6E-05 31.7 4.7 54 152-211 2-55 (68)
86 KOG2076|consensus 84.2 82 0.0018 35.8 19.6 106 126-245 399-504 (895)
87 PF12895 Apc3: Anaphase-promot 83.5 3.5 7.6E-05 32.3 5.9 58 143-207 27-84 (84)
88 CHL00033 ycf3 photosystem I as 83.2 33 0.00071 30.5 13.1 106 140-250 34-139 (168)
89 TIGR03302 OM_YfiO outer membra 82.9 41 0.00089 31.4 21.4 183 59-253 30-232 (235)
90 PF12802 MarR_2: MarR family; 82.6 6.8 0.00015 28.6 6.8 51 354-404 7-59 (62)
91 KOG1156|consensus 82.6 82 0.0018 34.6 18.3 98 148-254 150-249 (700)
92 PF13512 TPR_18: Tetratricopep 82.5 6.5 0.00014 34.8 7.6 65 24-91 12-76 (142)
93 PF13429 TPR_15: Tetratricopep 82.5 49 0.0011 32.0 15.2 188 32-251 87-275 (280)
94 PF08220 HTH_DeoR: DeoR-like h 82.0 5.9 0.00013 29.1 6.1 50 357-410 5-54 (57)
95 PLN03088 SGT1, suppressor of 81.7 27 0.00058 35.6 13.0 95 146-255 7-101 (356)
96 PF03399 SAC3_GANP: SAC3/GANP/ 81.4 12 0.00026 34.5 9.6 103 262-378 97-204 (204)
97 PF13432 TPR_16: Tetratricopep 80.7 11 0.00024 27.6 7.5 58 27-90 2-59 (65)
98 PRK10803 tol-pal system protei 79.9 35 0.00075 33.4 12.5 101 25-170 145-246 (263)
99 PRK15431 ferrous iron transpor 79.8 5.6 0.00012 31.4 5.5 43 358-400 8-50 (78)
100 KOG1155|consensus 79.3 52 0.0011 34.8 13.8 152 37-210 379-536 (559)
101 KOG2076|consensus 79.3 1.2E+02 0.0026 34.5 33.7 337 15-392 132-511 (895)
102 PRK10370 formate-dependent nit 79.3 53 0.0012 30.4 18.0 99 143-256 75-176 (198)
103 COG2976 Uncharacterized protei 79.2 56 0.0012 30.6 13.1 65 140-211 125-189 (207)
104 smart00550 Zalpha Z-DNA-bindin 77.9 7 0.00015 29.8 5.6 32 367-398 23-54 (68)
105 PRK15359 type III secretion sy 77.5 24 0.00052 30.8 9.7 94 146-254 29-122 (144)
106 PF13412 HTH_24: Winged helix- 77.1 8.6 0.00019 26.8 5.5 33 364-396 15-47 (48)
107 PLN03077 Protein ECB2; Provisi 76.6 1.5E+02 0.0032 34.0 20.9 92 145-253 629-720 (857)
108 PRK10803 tol-pal system protei 76.5 31 0.00067 33.8 11.1 96 151-255 153-248 (263)
109 smart00347 HTH_MARR helix_turn 76.1 25 0.00054 27.8 8.8 67 364-430 22-89 (101)
110 cd05804 StaR_like StaR_like; a 76.1 86 0.0019 31.1 19.6 197 34-253 18-215 (355)
111 PF13414 TPR_11: TPR repeat; P 74.6 14 0.0003 27.3 6.5 63 141-209 3-66 (69)
112 KOG2002|consensus 74.1 1.7E+02 0.0038 33.7 25.2 104 142-256 271-374 (1018)
113 PF01047 MarR: MarR family; I 73.9 14 0.00031 26.7 6.2 50 356-405 7-56 (59)
114 KOG0624|consensus 73.6 75 0.0016 32.5 12.7 174 15-208 102-296 (504)
115 KOG3081|consensus 73.5 98 0.0021 30.5 15.6 187 28-252 14-201 (299)
116 PF13371 TPR_9: Tetratricopept 73.2 11 0.00024 28.2 5.7 59 147-211 1-59 (73)
117 PRK15174 Vi polysaccharide exp 72.9 1.6E+02 0.0035 32.7 25.2 197 25-253 45-241 (656)
118 PF13414 TPR_11: TPR repeat; P 72.7 18 0.00039 26.7 6.7 63 181-252 3-66 (69)
119 PF12569 NARP1: NMDA receptor- 71.6 41 0.00089 36.3 11.4 66 139-210 2-67 (517)
120 KOG4414|consensus 71.6 11 0.00024 33.4 5.7 43 345-387 111-153 (197)
121 KOG3617|consensus 71.6 1.3E+02 0.0029 34.3 15.0 194 36-250 742-993 (1416)
122 PF13176 TPR_7: Tetratricopept 71.5 5.6 0.00012 26.0 3.2 24 145-168 3-26 (36)
123 TIGR03879 near_KaiC_dom probab 71.3 6.7 0.00014 30.6 3.9 40 357-396 23-62 (73)
124 PF02082 Rrf2: Transcriptional 70.6 16 0.00036 28.7 6.3 47 366-412 25-71 (83)
125 cd00090 HTH_ARSR Arsenical Res 70.1 21 0.00045 26.3 6.7 45 367-411 21-65 (78)
126 KOG1129|consensus 68.7 43 0.00094 33.9 9.8 99 142-256 224-322 (478)
127 COG3355 Predicted transcriptio 68.3 38 0.00083 29.3 8.3 71 365-435 41-120 (126)
128 KOG0553|consensus 67.7 63 0.0014 32.2 10.7 151 230-398 87-250 (304)
129 PF03704 BTAD: Bacterial trans 67.6 24 0.00052 30.5 7.3 73 135-213 56-128 (146)
130 smart00344 HTH_ASNC helix_turn 67.6 13 0.00029 30.5 5.4 43 360-402 11-56 (108)
131 COG1729 Uncharacterized protei 67.4 52 0.0011 32.2 10.0 102 25-172 144-245 (262)
132 PF14559 TPR_19: Tetratricopep 67.3 21 0.00046 26.1 6.0 54 32-91 1-54 (68)
133 KOG1861|consensus 66.3 85 0.0018 33.2 11.7 135 227-380 351-492 (540)
134 COG2956 Predicted N-acetylgluc 66.0 1.6E+02 0.0034 30.0 18.4 165 28-211 113-279 (389)
135 KOG2376|consensus 65.3 2.1E+02 0.0046 31.3 14.7 153 37-209 356-519 (652)
136 smart00419 HTH_CRP helix_turn_ 65.2 11 0.00024 25.7 3.8 32 366-397 8-39 (48)
137 PF09295 ChAPs: ChAPs (Chs5p-A 64.7 1.5E+02 0.0032 30.9 13.4 123 64-207 171-294 (395)
138 KOG3250|consensus 63.4 32 0.00069 32.6 7.4 76 360-435 103-189 (258)
139 KOG3054|consensus 63.2 16 0.00034 35.1 5.4 52 360-411 208-259 (299)
140 cd00092 HTH_CRP helix_turn_hel 63.1 11 0.00025 27.7 3.8 34 365-398 24-57 (67)
141 KOG1128|consensus 62.5 54 0.0012 36.5 9.9 137 140-284 397-556 (777)
142 PF00325 Crp: Bacterial regula 62.1 15 0.00033 23.8 3.6 30 367-396 3-32 (32)
143 smart00418 HTH_ARSR helix_turn 62.0 29 0.00063 24.7 5.8 46 364-409 8-53 (66)
144 PF04703 FaeA: FaeA-like prote 61.4 22 0.00048 26.7 5.0 34 364-397 13-46 (62)
145 TIGR00373 conserved hypothetic 61.3 89 0.0019 28.1 9.8 69 365-433 27-97 (158)
146 PF13428 TPR_14: Tetratricopep 60.4 17 0.00037 24.7 4.0 26 144-169 4-29 (44)
147 PRK09954 putative kinase; Prov 60.4 22 0.00047 36.2 6.5 54 357-410 8-64 (362)
148 COG3071 HemY Uncharacterized e 60.2 2.2E+02 0.0047 29.6 16.1 260 140-445 83-343 (400)
149 KOG0624|consensus 59.5 2.2E+02 0.0047 29.3 12.8 160 34-209 201-369 (504)
150 PF13174 TPR_6: Tetratricopept 59.5 14 0.0003 22.8 3.2 26 145-170 4-29 (33)
151 TIGR02010 IscR iron-sulfur clu 59.5 30 0.00066 30.0 6.4 42 366-407 25-66 (135)
152 PF12728 HTH_17: Helix-turn-he 59.3 20 0.00042 25.2 4.3 47 367-424 2-48 (51)
153 PF09339 HTH_IclR: IclR helix- 59.2 22 0.00047 25.3 4.5 39 359-397 11-49 (52)
154 COG1497 Predicted transcriptio 58.7 62 0.0013 31.2 8.5 64 365-433 24-87 (260)
155 cd07377 WHTH_GntR Winged helix 57.9 28 0.00062 25.2 5.2 30 368-397 27-56 (66)
156 KOG1538|consensus 57.8 3.1E+02 0.0067 30.6 19.2 24 227-250 807-830 (1081)
157 PRK10747 putative protoheme IX 57.5 2.3E+02 0.0051 29.1 26.8 267 26-333 88-360 (398)
158 cd00189 TPR Tetratricopeptide 57.2 72 0.0016 23.1 10.8 58 145-208 38-95 (100)
159 PF04545 Sigma70_r4: Sigma-70, 56.6 30 0.00065 24.2 4.8 31 361-391 15-45 (50)
160 PRK09782 bacteriophage N4 rece 56.5 3.9E+02 0.0085 31.4 21.0 96 144-254 612-707 (987)
161 PF13181 TPR_8: Tetratricopept 56.3 26 0.00056 21.9 4.1 25 143-167 3-27 (34)
162 PF13404 HTH_AsnC-type: AsnC-t 56.1 27 0.00058 24.0 4.3 27 364-390 15-41 (42)
163 PRK11179 DNA-binding transcrip 56.1 28 0.0006 30.9 5.6 39 364-402 21-62 (153)
164 PF07721 TPR_4: Tetratricopept 55.8 23 0.00049 21.3 3.5 23 143-165 3-25 (26)
165 KOG1498|consensus 55.6 7.2 0.00016 40.0 1.9 93 10-102 338-433 (439)
166 PF09743 DUF2042: Uncharacteri 55.6 45 0.00096 32.9 7.4 40 364-403 128-167 (272)
167 COG2976 Uncharacterized protei 55.5 1.8E+02 0.004 27.3 12.5 100 142-254 90-189 (207)
168 smart00420 HTH_DEOR helix_turn 55.5 46 0.00099 22.8 5.7 34 365-398 13-46 (53)
169 TIGR02337 HpaR homoprotocatech 55.2 1.2E+02 0.0027 25.2 10.5 42 364-405 40-81 (118)
170 PF13374 TPR_10: Tetratricopep 55.1 26 0.00057 22.6 4.2 27 142-168 3-29 (42)
171 KOG3060|consensus 54.8 1.6E+02 0.0035 28.8 10.7 25 145-169 158-182 (289)
172 PRK15179 Vi polysaccharide bio 54.5 3.6E+02 0.0078 30.4 19.1 184 17-273 81-264 (694)
173 TIGR01764 excise DNA binding d 54.2 27 0.00059 23.6 4.3 47 367-424 2-48 (49)
174 PRK11169 leucine-responsive tr 54.0 28 0.0006 31.3 5.4 49 354-402 16-67 (164)
175 TIGR00738 rrf2_super rrf2 fami 53.5 33 0.00071 29.3 5.6 41 366-406 25-65 (132)
176 smart00345 HTH_GNTR helix_turn 52.5 28 0.00061 24.7 4.3 32 366-397 19-51 (60)
177 PF12755 Vac14_Fab1_bd: Vacuol 52.5 60 0.0013 26.6 6.6 51 200-252 21-71 (97)
178 PF10602 RPN7: 26S proteasome 52.4 1.8E+02 0.004 26.4 13.6 79 173-257 28-106 (177)
179 PF14561 TPR_20: Tetratricopep 52.0 46 0.001 26.8 5.8 48 24-72 24-71 (90)
180 PF08279 HTH_11: HTH domain; 51.3 83 0.0018 22.2 6.6 28 367-394 16-43 (55)
181 COG1959 Predicted transcriptio 51.2 41 0.00089 29.9 5.9 53 355-407 12-66 (150)
182 CHL00033 ycf3 photosystem I as 50.7 1.3E+02 0.0029 26.4 9.4 90 155-254 13-102 (168)
183 PF08672 APC2: Anaphase promot 50.5 43 0.00092 25.0 4.9 24 376-399 31-54 (60)
184 TIGR02944 suf_reg_Xantho FeS a 50.4 24 0.00051 30.3 4.1 41 365-405 24-64 (130)
185 PF13176 TPR_7: Tetratricopept 50.4 29 0.00064 22.5 3.7 26 64-89 1-26 (36)
186 KOG2002|consensus 49.7 4.8E+02 0.01 30.4 23.3 286 29-331 277-594 (1018)
187 PRK11189 lipoprotein NlpI; Pro 49.7 2.6E+02 0.0057 27.4 12.2 101 139-254 62-162 (296)
188 TIGR02552 LcrH_SycD type III s 49.5 1.1E+02 0.0023 25.5 8.2 63 143-211 53-115 (135)
189 PF13545 HTH_Crp_2: Crp-like h 49.5 30 0.00066 26.2 4.3 32 366-397 28-59 (76)
190 KOG2908|consensus 49.2 3.1E+02 0.0067 28.0 14.9 119 79-201 55-177 (380)
191 PF07719 TPR_2: Tetratricopept 49.1 41 0.00088 20.7 4.2 25 144-168 4-28 (34)
192 PF10300 DUF3808: Protein of u 49.0 2.7E+02 0.0059 29.5 12.7 89 153-253 245-334 (468)
193 PF04733 Coatomer_E: Coatomer 48.9 2.8E+02 0.006 27.4 15.9 138 145-305 135-275 (290)
194 KOG1061|consensus 48.6 4.4E+02 0.0096 29.7 14.5 176 31-224 341-517 (734)
195 PRK10141 DNA-binding transcrip 48.5 1.4E+02 0.0031 25.4 8.5 70 366-437 30-104 (117)
196 PRK10857 DNA-binding transcrip 48.1 29 0.00063 31.4 4.5 43 365-407 24-66 (164)
197 PLN03088 SGT1, suppressor of 47.8 3.2E+02 0.0069 27.8 15.0 78 144-232 39-116 (356)
198 PLN03077 Protein ECB2; Provisi 47.0 4.9E+02 0.011 29.7 31.6 165 227-410 557-741 (857)
199 PRK06266 transcription initiat 47.0 1.1E+02 0.0024 28.0 8.2 67 365-431 35-103 (178)
200 PF01022 HTH_5: Bacterial regu 46.8 55 0.0012 22.7 4.8 33 365-397 14-46 (47)
201 PF02259 FAT: FAT domain; Int 46.5 3E+02 0.0064 27.1 19.1 150 101-253 106-287 (352)
202 PF01325 Fe_dep_repress: Iron 46.3 71 0.0015 23.6 5.6 35 363-397 19-53 (60)
203 KOG1585|consensus 45.7 3E+02 0.0066 27.0 24.4 136 148-294 117-253 (308)
204 PRK11920 rirA iron-responsive 45.7 57 0.0012 29.1 5.9 41 366-406 24-64 (153)
205 TIGR01610 phage_O_Nterm phage 45.6 68 0.0015 26.0 5.9 47 363-411 44-90 (95)
206 KOG2300|consensus 45.4 4.2E+02 0.0091 28.5 21.4 119 121-246 27-149 (629)
207 KOG0548|consensus 45.0 4.3E+02 0.0094 28.5 20.6 93 147-254 364-456 (539)
208 PF00244 14-3-3: 14-3-3 protei 44.9 2.9E+02 0.0062 26.5 14.8 28 64-91 3-30 (236)
209 PF10155 DUF2363: Uncharacteri 44.5 2.1E+02 0.0045 24.7 10.5 117 37-167 4-124 (126)
210 PHA02943 hypothetical protein; 44.4 1.5E+02 0.0032 26.7 8.0 86 364-450 22-114 (165)
211 PF10579 Rapsyn_N: Rapsyn N-te 44.2 87 0.0019 24.9 5.9 57 24-84 8-65 (80)
212 PRK09782 bacteriophage N4 rece 44.0 6E+02 0.013 29.9 20.8 192 26-250 513-737 (987)
213 PF13512 TPR_18: Tetratricopep 43.9 2.3E+02 0.005 25.1 11.0 60 147-211 16-77 (142)
214 PRK03902 manganese transport t 42.8 1.2E+02 0.0025 26.4 7.4 34 364-397 20-53 (142)
215 PF01978 TrmB: Sugar-specific 42.7 1.2E+02 0.0026 22.5 6.6 39 364-402 20-58 (68)
216 PF13371 TPR_9: Tetratricopept 42.4 1E+02 0.0022 22.7 6.1 56 189-253 3-58 (73)
217 PRK15363 pathogenicity island 41.9 2.6E+02 0.0057 25.2 11.0 94 145-253 39-132 (157)
218 PF00392 GntR: Bacterial regul 41.7 99 0.0021 22.8 5.9 37 362-398 19-56 (64)
219 PF13463 HTH_27: Winged helix 41.6 92 0.002 22.8 5.8 41 362-402 14-54 (68)
220 PF12840 HTH_20: Helix-turn-he 41.5 92 0.002 22.7 5.6 37 362-398 20-56 (61)
221 PRK03573 transcriptional regul 40.9 1.9E+02 0.0041 24.9 8.5 41 366-406 46-86 (144)
222 PF04492 Phage_rep_O: Bacterio 40.8 40 0.00086 28.0 3.8 35 362-396 50-84 (100)
223 COG1522 Lrp Transcriptional re 40.7 66 0.0014 28.0 5.6 42 361-402 17-61 (154)
224 KOG1129|consensus 40.5 1E+02 0.0022 31.4 7.2 58 145-208 260-317 (478)
225 PRK11014 transcriptional repre 40.2 1.1E+02 0.0024 26.6 6.8 47 365-411 24-70 (141)
226 KOG0543|consensus 39.6 2.7E+02 0.0059 28.9 10.3 104 142-254 209-321 (397)
227 PF06163 DUF977: Bacterial pro 39.1 1.1E+02 0.0023 26.6 6.2 62 360-429 20-81 (127)
228 PF13525 YfiO: Outer membrane 38.1 3.2E+02 0.007 25.1 20.7 168 60-273 3-187 (203)
229 PF10475 DUF2450: Protein of u 37.6 2.3E+02 0.0051 27.9 9.5 21 148-168 134-154 (291)
230 KOG1586|consensus 37.6 4E+02 0.0087 26.0 19.6 173 69-250 80-262 (288)
231 PF13730 HTH_36: Helix-turn-he 37.5 42 0.00092 23.8 3.2 29 368-396 27-55 (55)
232 COG5240 SEC21 Vesicle coat com 37.4 2.2E+02 0.0048 31.2 9.4 94 29-130 361-459 (898)
233 PF06160 EzrA: Septation ring 37.4 3.6E+02 0.0077 29.5 11.6 35 137-171 167-203 (560)
234 COG3118 Thioredoxin domain-con 36.9 4.4E+02 0.0096 26.3 13.9 125 142-284 169-293 (304)
235 PF08281 Sigma70_r4_2: Sigma-7 36.9 76 0.0017 22.3 4.4 32 359-390 19-50 (54)
236 COG4649 Uncharacterized protei 36.8 3.5E+02 0.0077 25.2 14.1 153 24-188 60-214 (221)
237 KOG2300|consensus 36.2 5.8E+02 0.013 27.5 20.7 172 64-243 325-504 (629)
238 COG3629 DnrI DNA-binding trans 36.1 2E+02 0.0042 28.5 8.4 66 145-216 157-222 (280)
239 PRK10411 DNA-binding transcrip 36.0 71 0.0015 30.7 5.3 41 357-397 9-49 (240)
240 PF09986 DUF2225: Uncharacteri 35.9 3.8E+02 0.0082 25.2 11.8 83 173-257 110-198 (214)
241 PRK04424 fatty acid biosynthes 35.9 59 0.0013 30.0 4.6 44 353-396 8-51 (185)
242 PF12854 PPR_1: PPR repeat 35.8 42 0.00092 21.6 2.6 23 145-167 11-33 (34)
243 PRK10434 srlR DNA-bindng trans 35.4 87 0.0019 30.3 5.9 41 356-396 9-49 (256)
244 PRK02603 photosystem I assembl 35.2 3.2E+02 0.0069 24.2 11.2 72 177-254 31-102 (172)
245 PF12964 DUF3853: Protein of u 34.7 27 0.00059 28.6 1.8 41 368-412 47-87 (96)
246 PF09205 DUF1955: Domain of un 34.4 3.3E+02 0.0072 24.2 14.3 128 25-167 5-146 (161)
247 KOG1924|consensus 34.2 7.6E+02 0.016 28.2 16.6 47 226-272 367-413 (1102)
248 PF13281 DUF4071: Domain of un 34.0 5.5E+02 0.012 26.6 12.6 86 79-167 120-208 (374)
249 PRK13509 transcriptional repre 33.9 86 0.0019 30.3 5.6 41 357-397 10-50 (251)
250 KOG3616|consensus 33.7 7.7E+02 0.017 28.1 13.3 91 151-250 742-850 (1636)
251 PF11873 DUF3393: Domain of un 33.5 25 0.00055 33.0 1.7 67 264-333 110-176 (204)
252 PRK11512 DNA-binding transcrip 33.3 3.2E+02 0.0069 23.6 9.3 43 364-406 52-94 (144)
253 PF04190 DUF410: Protein of un 33.2 4.6E+02 0.01 25.4 11.6 95 145-248 14-114 (260)
254 PF04967 HTH_10: HTH DNA bindi 33.1 60 0.0013 23.6 3.3 26 365-390 22-47 (53)
255 PF13601 HTH_34: Winged helix 33.1 2.4E+02 0.0052 22.1 8.1 42 364-405 12-53 (80)
256 COG5127 Vacuolar H+-ATPase V1 32.8 3.8E+02 0.0083 26.9 9.6 108 72-181 42-166 (383)
257 PRK14720 transcript cleavage f 32.5 8.6E+02 0.019 28.3 16.9 125 141-284 31-168 (906)
258 KOG0212|consensus 32.5 86 0.0019 34.0 5.5 86 146-237 26-113 (675)
259 TIGR02702 SufR_cyano iron-sulf 32.3 1.6E+02 0.0035 27.3 7.0 37 363-399 12-48 (203)
260 PHA02360 hypothetical protein 32.1 79 0.0017 23.8 3.7 48 120-167 8-60 (70)
261 PF06971 Put_DNA-bind_N: Putat 32.0 60 0.0013 23.3 3.1 26 363-388 25-50 (50)
262 KOG3677|consensus 31.9 2.4E+02 0.0053 29.6 8.4 58 357-414 419-488 (525)
263 COG1729 Uncharacterized protei 31.4 5.1E+02 0.011 25.4 11.6 103 145-256 145-247 (262)
264 smart00346 HTH_ICLR helix_turn 31.4 1.1E+02 0.0024 23.9 5.0 34 365-398 19-52 (91)
265 PF12793 SgrR_N: Sugar transpo 31.3 1.1E+02 0.0025 25.8 5.2 49 364-412 17-68 (115)
266 PRK10870 transcriptional repre 30.9 2.3E+02 0.005 25.7 7.6 41 365-405 70-110 (176)
267 PF04760 IF2_N: Translation in 30.8 45 0.00097 23.9 2.3 24 365-388 2-25 (54)
268 smart00421 HTH_LUXR helix_turn 30.4 1.1E+02 0.0025 20.9 4.5 29 363-391 15-43 (58)
269 PF10078 DUF2316: Uncharacteri 30.3 50 0.0011 26.8 2.7 24 365-388 22-45 (89)
270 KOG1155|consensus 30.0 6.6E+02 0.014 26.9 11.3 104 142-253 433-536 (559)
271 PF12324 HTH_15: Helix-turn-he 29.8 58 0.0013 25.7 2.9 28 364-391 36-63 (77)
272 PF13428 TPR_14: Tetratricopep 29.7 1.8E+02 0.0038 19.5 5.3 29 183-211 3-31 (44)
273 PF13613 HTH_Tnp_4: Helix-turn 29.4 1.1E+02 0.0023 21.9 4.1 39 353-391 6-44 (53)
274 TIGR01889 Staph_reg_Sar staphy 29.3 3.2E+02 0.007 22.4 8.2 41 365-405 42-82 (109)
275 PF05584 Sulfolobus_pRN: Sulfo 28.9 1.8E+02 0.0039 22.6 5.4 41 357-399 11-51 (72)
276 PRK11050 manganese transport r 28.7 4.1E+02 0.0089 23.4 8.7 35 365-399 50-84 (152)
277 PF01726 LexA_DNA_bind: LexA D 28.5 1.4E+02 0.003 22.5 4.8 31 367-397 26-57 (65)
278 COG5051 RPL36A Ribosomal prote 28.5 1.9E+02 0.0042 23.2 5.6 69 89-165 27-95 (97)
279 PF12688 TPR_5: Tetratrico pep 28.4 3.7E+02 0.008 22.8 12.5 99 144-251 4-102 (120)
280 PF00515 TPR_1: Tetratricopept 28.1 1.5E+02 0.0033 18.2 4.3 24 144-167 4-27 (34)
281 cd06170 LuxR_C_like C-terminal 28.0 1.3E+02 0.0029 20.7 4.5 28 363-390 12-39 (57)
282 PRK10046 dpiA two-component re 27.6 1.1E+02 0.0024 28.4 5.1 45 358-402 169-213 (225)
283 cd08312 Death_MyD88 Death doma 27.5 1.1E+02 0.0025 23.9 4.3 46 370-437 20-70 (79)
284 PF11817 Foie-gras_1: Foie gra 27.1 3.9E+02 0.0084 25.6 8.9 59 140-199 177-236 (247)
285 PRK10906 DNA-binding transcrip 27.0 1.5E+02 0.0032 28.7 5.9 40 357-396 10-49 (252)
286 PF00440 TetR_N: Bacterial reg 26.8 1.2E+02 0.0026 20.8 3.9 23 361-383 11-33 (47)
287 PHA02591 hypothetical protein; 26.8 64 0.0014 25.5 2.6 24 366-389 59-82 (83)
288 KOG3060|consensus 26.3 6.4E+02 0.014 24.9 13.9 116 118-256 70-186 (289)
289 COG1349 GlpR Transcriptional r 26.3 1.5E+02 0.0032 28.8 5.8 43 355-397 8-50 (253)
290 KOG1125|consensus 26.3 8.8E+02 0.019 26.5 12.0 95 142-254 431-528 (579)
291 TIGR01884 cas_HTH CRISPR locus 26.1 1.9E+02 0.0042 26.7 6.4 38 365-402 156-193 (203)
292 cd06171 Sigma70_r4 Sigma70, re 25.6 2E+02 0.0043 19.1 5.0 28 364-391 24-51 (55)
293 PRK04217 hypothetical protein; 25.4 2E+02 0.0044 24.2 5.7 44 363-406 55-105 (110)
294 PF08221 HTH_9: RNA polymerase 25.2 1.3E+02 0.0029 22.3 4.1 34 364-397 25-58 (62)
295 PF08631 SPO22: Meiosis protei 24.8 6.4E+02 0.014 24.4 19.9 177 34-254 5-187 (278)
296 PF13542 HTH_Tnp_ISL3: Helix-t 24.7 1.1E+02 0.0023 21.3 3.4 26 365-390 26-51 (52)
297 PF12688 TPR_5: Tetratrico pep 24.5 4.4E+02 0.0095 22.4 12.6 101 25-171 4-105 (120)
298 PF04539 Sigma70_r3: Sigma-70 24.5 78 0.0017 24.2 2.9 25 365-389 19-43 (78)
299 PRK15331 chaperone protein Sic 24.5 5.4E+02 0.012 23.4 10.4 95 145-254 41-135 (165)
300 PF04192 Utp21: Utp21 specific 24.5 6.4E+02 0.014 24.2 10.4 99 65-171 113-217 (237)
301 PRK12370 invasion protein regu 24.2 9.2E+02 0.02 26.0 16.8 95 145-253 376-470 (553)
302 PRK14574 hmsH outer membrane p 23.8 1.2E+03 0.025 27.0 20.4 172 62-252 292-478 (822)
303 PF08679 DsrD: Dissimilatory s 23.6 1.4E+02 0.0031 22.8 3.9 33 364-396 17-50 (67)
304 PRK12370 invasion protein regu 23.3 9.5E+02 0.021 25.8 13.4 95 144-253 341-435 (553)
305 PRK10681 DNA-binding transcrip 23.0 1.4E+02 0.0031 28.8 5.0 39 353-391 8-46 (252)
306 PF10743 Phage_Cox: Regulatory 22.9 3.1E+02 0.0066 22.2 5.8 61 358-430 4-70 (87)
307 COG1675 TFA1 Transcription ini 22.8 4.8E+02 0.01 24.0 8.0 68 366-433 32-101 (176)
308 PF14394 DUF4423: Domain of un 22.7 3.8E+02 0.0082 24.3 7.4 31 368-398 41-73 (171)
309 PF01535 PPR: PPR repeat; Int 22.5 1.2E+02 0.0027 17.8 3.0 24 146-169 5-28 (31)
310 KOG2041|consensus 22.4 1.2E+03 0.025 26.6 14.7 72 188-273 767-838 (1189)
311 PF13812 PPR_3: Pentatricopept 22.3 1.9E+02 0.0042 17.4 4.2 26 65-90 4-29 (34)
312 smart00874 B5 tRNA synthetase 22.3 1.9E+02 0.0041 21.6 4.6 62 366-439 5-68 (71)
313 PF13518 HTH_28: Helix-turn-he 22.3 1.3E+02 0.0027 20.7 3.4 41 362-403 8-48 (52)
314 KOG1931|consensus 22.0 1.4E+03 0.03 27.2 20.1 45 125-171 196-245 (1156)
315 KOG1861|consensus 21.8 1E+03 0.022 25.6 12.1 109 137-250 304-413 (540)
316 TIGR03362 VI_chp_7 type VI sec 21.7 3.2E+02 0.007 27.3 7.3 65 23-90 214-278 (301)
317 PF02002 TFIIE_alpha: TFIIE al 21.4 2E+02 0.0044 23.5 5.0 36 364-399 25-60 (105)
318 PF08280 HTH_Mga: M protein tr 21.3 3.1E+02 0.0066 19.9 5.4 28 364-391 17-44 (59)
319 KOG0547|consensus 21.1 1.1E+03 0.023 25.6 15.6 162 64-255 328-493 (606)
320 PRK14165 winged helix-turn-hel 21.1 2.1E+02 0.0046 27.1 5.6 48 364-411 19-66 (217)
321 smart00531 TFIIE Transcription 21.0 4E+02 0.0087 23.4 7.0 70 364-433 13-87 (147)
322 PF04190 DUF410: Protein of un 20.9 7.7E+02 0.017 23.9 20.4 61 142-202 91-162 (260)
323 KOG2796|consensus 20.4 8.6E+02 0.019 24.2 11.6 103 143-256 179-284 (366)
324 KOG0543|consensus 20.4 9.9E+02 0.021 24.9 16.0 101 140-255 256-357 (397)
325 PRK09802 DNA-binding transcrip 20.4 2.3E+02 0.005 27.7 5.9 41 357-397 22-62 (269)
326 PF02847 MA3: MA3 domain; Int 20.0 4.8E+02 0.01 21.1 9.8 47 62-109 2-48 (113)
No 1
>KOG1498|consensus
Probab=100.00 E-value=4e-104 Score=770.75 Aligned_cols=439 Identities=56% Similarity=0.897 Sum_probs=428.1
Q ss_pred cccccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292 10 RIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT 89 (452)
Q Consensus 10 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~ 89 (452)
+++||++|||+.+++.+|++.+++ .+++++|++.|+.+||++|+++|..++.+++..|+++||..++|+.|++++..|+
T Consensus 1 ~~~k~e~dys~~~~e~~~~~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls 79 (439)
T KOG1498|consen 1 RIQKMEVDYSEKVDELLPKANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS 79 (439)
T ss_pred CCcccccchHHHHHHhhHhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 367999999999999999999999 5569999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 90 KRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 90 ~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
+||||+|+||++||+++|.|++++||.++++++|+||+.+|+||||+|+||+|++..||+++|++||+.+|+++++++||
T Consensus 80 kkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~V 159 (439)
T KOG1498|consen 80 KKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQV 159 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy292 170 ETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249 (452)
Q Consensus 170 Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e 249 (452)
||||+|+..+|++|+|||||||+..+||++|.++++||+.++|++++. +++|+.||.+|++++.|.+.|+++|++|++
T Consensus 160 ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~--~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra 237 (439)
T KOG1498|consen 160 ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV--QELKLKYYELMIRLGLHDRAYLNVCRSYRA 237 (439)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH--HHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999998886 999999999999999999999999999999
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhc
Q psy292 250 ILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELF 329 (452)
Q Consensus 250 ~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~ 329 (452)
+|+++.+++||++|...|..+|+|++|||++++++++++++..|+.+.++|.+..+++.|.+++|++|+.+.+.|+..|.
T Consensus 238 iy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~ 317 (439)
T KOG1498|consen 238 IYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELR 317 (439)
T ss_pred HhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999998
Q ss_pred cCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 330 KTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 330 ~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
...+|. ....|+.||++|+.||+||||+++++||+||++.|+|+++|+|+++.|.+||.||..|.++||||||+|||.|
T Consensus 318 ~~~~~~-~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F 396 (439)
T KOG1498|consen 318 TNDFFD-GGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINF 396 (439)
T ss_pred hccccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEE
Confidence 886664 5678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhchhhhC
Q psy292 410 ARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVAA 452 (452)
Q Consensus 410 ~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~~~~~~~~ 452 (452)
..++++++.||.|+.|+++|+++++|+||+|+||+|||++.++
T Consensus 397 ~k~K~~~~~LneW~~nve~L~~ll~K~~HLI~KEemmhsi~~~ 439 (439)
T KOG1498|consen 397 QKVKDSNEILNEWASNVEKLLGLLEKVSHLIHKEEMMHSIQKA 439 (439)
T ss_pred EecccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999998764
No 2
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-88 Score=636.57 Aligned_cols=436 Identities=42% Similarity=0.696 Sum_probs=420.0
Q ss_pred ccccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 11 IVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 11 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
++|.++|||....+..+...+++..+ .+.|+++|+.+||++|+++|..+..+++..|+.+|+..|+|++|+++++.|++
T Consensus 2 ~~k~~~dys~~~~e~~~~~~~l~~~d-~~~~le~LL~~EkK~RqasD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~k 80 (439)
T COG5071 2 EQKPEVDYSEKFAELQKSLNNLNTID-IDANLEKLLIFEKKVRQASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFK 80 (439)
T ss_pred CCCcccCHHHHHHHHhhhhcchhhcc-hhhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHH
Confidence 57999999999999999998887765 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy292 91 RRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVE 170 (452)
Q Consensus 91 ~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~E 170 (452)
+|||+|++|+.||+++|+|+....|..+++.++++|+.++|||||+|+||++++..|.++++..||+++|++++.++|||
T Consensus 81 KhGQlk~sI~~MIq~vmEylKg~~dl~t~i~~ietlr~VtEgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVE 160 (439)
T COG5071 81 KHGQLKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVE 160 (439)
T ss_pred HcchHHHHHHHHHHHHHHhccCcccccchHhHHHHHHHHhcCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchh
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 171 TYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 171 t~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
|||+++..+|+.|+|||+|||+..+||.+|.++++|+..++|++++. +.+|++||.+..+++.|.|.|+++|+||.++
T Consensus 161 Tygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~--~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~v 238 (439)
T COG5071 161 TYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDV--QSLKLKYYELKVRIGLHDRAYLDVCKYYRAV 238 (439)
T ss_pred hccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhheeecccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887 9999999999999999999999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhcc
Q psy292 251 LTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFK 330 (452)
Q Consensus 251 ~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~ 330 (452)
|+|..+++|++.|..+|.++++|++|+|+++++.++++++..+.++..+|....++++|..+++++||...+.|++.|..
T Consensus 239 Y~t~~~~~d~Akwk~VLS~~v~F~iLtpy~neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~ 318 (439)
T COG5071 239 YDTAVVQEDPAKWKEVLSNVVCFALLTPYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSALRS 318 (439)
T ss_pred HHHHHhccCcccccchhhcceeeEEecccccHHHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHhhhHHHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999877
Q ss_pred CC-CCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 331 TS-VFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 331 ~~-~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
+. -|. .+-|..||.+|++|++|||+|+|++|||||+..+|+.++++|++++|+.+|.||..|-++|||+||+|||.|
T Consensus 319 ~~faF~--~e~~~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~F 396 (439)
T COG5071 319 NVFAFN--DEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISF 396 (439)
T ss_pred hhhhhc--cchhhhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEe
Confidence 63 442 455668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhchhhh
Q psy292 410 ARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVA 451 (452)
Q Consensus 410 ~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~~~~~~~ 451 (452)
+++++..+.||.|+.|++.+++++++++|+|.||+|+|++++
T Consensus 397 EK~~n~~~~lneW~~NV~ellgklek~~HLI~KEe~m~siqa 438 (439)
T COG5071 397 EKSQNVQEQLNEWGSNVTELLGKLEKVRHLIIKEEMMNSIQA 438 (439)
T ss_pred eccccHHHHHHHhcccHHHHHHHHHHHhHHHhHHHHHhhhcc
Confidence 999999999999999999999999999999999999999874
No 3
>KOG1497|consensus
Probab=100.00 E-value=7.7e-52 Score=394.21 Aligned_cols=324 Identities=20% Similarity=0.330 Sum_probs=295.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccCcchHHH
Q psy292 103 IQECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVET-YGSMEKKEK 180 (452)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et-~~~~~~~~k 180 (452)
++.+-..++.+| .+.+.++++ +|..++.+-+.+|++.+.++.+||.+||++++|..|+..|..++.+| .+..+...|
T Consensus 65 lsl~~~~l~~l~-~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~k 143 (399)
T KOG1497|consen 65 LSLFDVELSILE-DELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQK 143 (399)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHH
Confidence 344444455444 477788888 88999999999999999999999999999999999999999999999 577889999
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCH
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDP 260 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~ 260 (452)
+..++.+.|+||+.+|.+.|+.+++|++...-.. .+ +++++.|+.|.++..+..|.|+||+++|++++.+.-+ |+
T Consensus 144 l~l~iriarlyLe~~d~veae~~inRaSil~a~~-~N--e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~--~e 218 (399)
T KOG1497|consen 144 LLLCIRIARLYLEDDDKVEAEAYINRASILQAES-SN--EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIV--DE 218 (399)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-cC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ch
Confidence 9999999999999999999999999999765343 45 8999999999999999999999999999999988775 66
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchh
Q psy292 261 IQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEE 340 (452)
Q Consensus 261 ~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~ 340 (452)
.++.++|+.++.|++|+.+||+|+++|+.+++|++++++|.|..+.|+|..+ +|+.++ .+.|+++|.+|+..+ +.|
T Consensus 219 ~~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~ileKmyl~r-iI~k~e-l~ef~~~L~pHQka~--~~d 294 (399)
T KOG1497|consen 219 SERLEALKKALQCTLLASAGPQRSRMLATLFKDERCQKLPAYGILEKMYLER-IIRKEE-LQEFEAFLQPHQKAH--TMD 294 (399)
T ss_pred HHHHHHHHHhHhheeecCCChHHHHHHHHHhcCcccccccchHHHHHHHHHH-Hhcchh-HHHHHHHhcchhhhc--ccC
Confidence 7899999999999999999999999999999999999999999999999998 667765 578999999999984 566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHH
Q psy292 341 GQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILN 420 (452)
Q Consensus 341 g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~ 420 (452)
|. ..|.++++||||+.+|++|.+|||+.||.+|++|++.+|+..++||.++|++|.|||.+|+|+|++. +.+.
T Consensus 295 gs---sil~ra~~EhNlls~Skly~nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~----e~l~ 367 (399)
T KOG1497|consen 295 GS---SILDRAVIEHNLLSASKLYNNISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDR----EELP 367 (399)
T ss_pred cc---hhhhhHHHHHhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecch----hhhh
Confidence 64 7899999999999999999999999999999999999999999999999999999999999999974 5799
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHH
Q psy292 421 EWSASLNELMKLVNNTTHLINKE 443 (452)
Q Consensus 421 ~W~~~i~~ll~~v~k~~~lI~ke 443 (452)
.|+.+|.+||+.||++...|.+-
T Consensus 368 ~wdkqi~sl~~qvNki~~~i~~~ 390 (399)
T KOG1497|consen 368 QWDKQIQSLCNQVNKILDKISHY 390 (399)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 4
>KOG1463|consensus
Probab=100.00 E-value=8.5e-50 Score=383.43 Aligned_cols=375 Identities=17% Similarity=0.231 Sum_probs=339.6
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhh-hhccCCchhHHHH---HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEK-QTRTGSDMVSTGR---ILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQA 98 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek-~~r~~~d~~~~~~---~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~a 98 (452)
..++.++.+.+.++.++++..|..+-. ....++|-....+ .+..+.+++.+.|+.+.+.+.++.++++..++ |++
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 347888888888777999999988544 2222344443333 89999999999999999999999999999999 899
Q ss_pred HHHHHHHHHhhhcCCCCH-HHHHHHHH-HH-HHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc
Q psy292 99 VVKMIQECVTYVDKTPSK-EIKVKLIE-TL-RTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM 175 (452)
Q Consensus 99 v~~~v~~~~~~~~~~~~~-~~~~~l~~-~L-~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~ 175 (452)
++|+|+.+++.+..+++. +.++++|. ++ |+..|+|.|+ |+.++-+|+.+|.+.++|.+|..+++++..| .+.+
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL---Rq~Learli~Ly~d~~~YteAlaL~~~L~rE-lKKl 161 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL---RQSLEARLIRLYNDTKRYTEALALINDLLRE-LKKL 161 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHhc
Confidence 999999999999999886 89999999 66 9999999999 9999999999999999999999999999999 5666
Q ss_pred chH-HHHHHHHHHHHHHhhccChHHH--HHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 176 EKK-EKVTLILEQMRLCLAKKDYIRT--QIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 176 ~~~-~k~e~~Le~~rl~l~~~d~~~a--~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
|++ ..++++|+.++.|+..+|.++| ..++.|+....+.+| |.++...+.+.|.+|.+++||.+||+||+|+|+
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp----PqlQa~lDLqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP----PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC----HHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence 665 8999999999999999999965 578999988877777 789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhh-hhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccC
Q psy292 253 TPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE-DKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKT 331 (452)
Q Consensus 253 t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~-~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~ 331 (452)
+|++..++.++..+||||++|.||.+...+...+++.... ....+.|.+|+.+..+|.+|+|..|+..+..|..+|..+
T Consensus 238 gf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D 317 (411)
T KOG1463|consen 238 GFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED 317 (411)
T ss_pred cccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC
Confidence 9999877778999999999999999999999988877664 356789999999999999999999999999999999999
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE-EEec
Q psy292 332 SVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI-INFA 410 (452)
Q Consensus 332 ~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi-V~f~ 410 (452)
|+.. .|+..|+++++|+||.+|++|||+|.+++||+.+|+|.+.||+.||+||+|++++|.+||++|+ |+|+
T Consensus 318 ~ivr-------~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~ 390 (411)
T KOG1463|consen 318 PIVR-------SHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFE 390 (411)
T ss_pred hHHH-------HHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeC
Confidence 9884 7999999999999999999999999999999999999999999999999999999999999997 8888
Q ss_pred cCC
Q psy292 411 RNK 413 (452)
Q Consensus 411 ~~~ 413 (452)
.|.
T Consensus 391 e~~ 393 (411)
T KOG1463|consen 391 EPP 393 (411)
T ss_pred CCC
Confidence 774
No 5
>KOG1464|consensus
Probab=100.00 E-value=6.3e-47 Score=355.05 Aligned_cols=366 Identities=19% Similarity=0.286 Sum_probs=308.3
Q ss_pred HhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH-----HHHHHH
Q psy292 33 AAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK-----MIQECV 107 (452)
Q Consensus 33 ~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~-----~v~~~~ 107 (452)
.++.++++|+..+..+-.-. ++.++|+|+|++++++++|..++++.|++.+..|.. ++|+|||+ .|+.++
T Consensus 38 l~e~~p~~Al~sF~kVlelE--gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT---YIkSAVTrNySEKsIN~Il 112 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELE--GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT---YIKSAVTRNYSEKSINSIL 112 (440)
T ss_pred ccccCHHHHHHHHHHHHhcc--cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHHhccccHHHHHHHH
Confidence 34456899998666532211 489999999999999999999999999999888876 89999995 799999
Q ss_pred hhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--CcchHHHHHHH
Q psy292 108 TYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYG--SMEKKEKVTLI 184 (452)
Q Consensus 108 ~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~--~~~~~~k~e~~ 184 (452)
+|++...+++...+|++ ||.++.+.|. |+.|.....+|+++|.+.|+|.+-.++|.++++.|.+ .-++..|...+
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdAKN--eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQL 190 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDAKN--ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQL 190 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhhc--ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchh
Confidence 99999999999999999 7888888776 6667788899999999999999999999999999863 33444555555
Q ss_pred HH----HHHHHhhccChHHHHHHHHHhh--------hhh---ccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy292 185 LE----QMRLCLAKKDYIRTQIISKKIN--------TKF---FDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249 (452)
Q Consensus 185 Le----~~rl~l~~~d~~~a~~~~~K~~--------~~~---~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e 249 (452)
|| .+++|.+.+|..+.+..+.++. |.+ +++||+ |+++.. |+|..+..||++||++|.|
T Consensus 191 LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGG-----KMHlre--g~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 191 LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGG-----KMHLRE--GEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCC-----cccccc--chHHHHHhHHHHHHhcccc
Confidence 55 4788999999998887777662 333 378888 888776 9999999999999999999
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHhC-----CCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHH
Q psy292 250 ILTTPCIQSDPIQRHAVLQNVVLYLMLA-----PYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLY 324 (452)
Q Consensus 250 ~~~t~~~~~d~~~~~~~Lk~~vl~~ILa-----~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~ 324 (452)
+ +++++.+||||+|++.+|. |++.+.+ ++|+ +.|+|.+|+.|+.+|++++++ +|
T Consensus 264 s--------GspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyK--NdPEIlAMTnlv~aYQ~NdI~-------eF 322 (440)
T KOG1464|consen 264 S--------GSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYK--NDPEILAMTNLVAAYQNNDII-------EF 322 (440)
T ss_pred c--------CCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCC--CCHHHHHHHHHHHHHhcccHH-------HH
Confidence 9 7799999999999999997 5666655 6665 357889999999999999985 56
Q ss_pred HHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCC
Q psy292 325 EEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA 404 (452)
Q Consensus 325 ~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~ 404 (452)
+++|+.|.---..++..++|.++|.+.++.+.++.+++||++|.++.|++.|++|+.+|+.+|..+|++.+|.|+||+++
T Consensus 323 E~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n 402 (440)
T KOG1464|consen 323 ERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVN 402 (440)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhh
Confidence 66776654321013334789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCC----hhHHHHHHHHHHHHHHHHH
Q psy292 405 GIINFARNKD----PGEILNEWSASLNELMKLV 433 (452)
Q Consensus 405 giV~f~~~~~----~~~~l~~W~~~i~~ll~~v 433 (452)
|++.....++ ....+..|++++.+|-..|
T Consensus 403 ~~l~~~~~~~s~~k~~~al~kW~~ql~Sl~~~i 435 (440)
T KOG1464|consen 403 QYLELDKSKNSGSKLYKALDKWNNQLKSLQSNI 435 (440)
T ss_pred hHhccCccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999987755 2578999999999987765
No 6
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=332.70 Aligned_cols=372 Identities=15% Similarity=0.206 Sum_probs=333.0
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHh-hhhccCCchhHH---HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALE-KQTRTGSDMVST---GRILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQAV 99 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~le-k~~r~~~d~~~~---~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~av 99 (452)
.++.|+.++++++.++|+..+..+- |... .|.... -..+..+.++|...|++..+-+.++.++.-..++ |+++
T Consensus 6 sle~a~~~v~~~~~~~ai~~yk~iL~kg~s--~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~ 83 (421)
T COG5159 6 SLELANNAVKSNDIEKAIGEYKRILGKGVS--KDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI 83 (421)
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhcCCCC--hhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH
Confidence 3789999999999999999999954 4222 121111 1288999999999999999999999999999999 8999
Q ss_pred HHHHHHHHhhhcCCCCH-HHHHHHHHH-H-HHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc
Q psy292 100 VKMIQECVTYVDKTPSK-EIKVKLIET-L-RTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME 176 (452)
Q Consensus 100 ~~~v~~~~~~~~~~~~~-~~~~~l~~~-L-~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~ 176 (452)
+|+|+.+++.++..||. +.+++++.. + |+..|+|.|+ |..+.-+|+.++.+.|.|.+|..++..+.-| ++.+|
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL---r~~Le~Kli~l~y~~~~YsdalalIn~ll~E-lKk~D 159 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL---RLELECKLIYLLYKTGKYSDALALINPLLHE-LKKYD 159 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHhhc
Confidence 99999999999988886 899999994 4 9999999999 9999999999999999999999999999988 67777
Q ss_pred hH-HHHHHHHHHHHHHhhccChHH--HHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 177 KK-EKVTLILEQMRLCLAKKDYIR--TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 177 ~~-~k~e~~Le~~rl~l~~~d~~~--a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
++ ..++++|...+.|++.++.++ |..++.|+......|| +.++..++.+.|++|..++||..|++||+|++++
T Consensus 160 DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP----pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 160 DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP----PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC----HHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 66 899999999999999999984 5688999988777777 7899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhh--hccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccC
Q psy292 254 PCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLED--KLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKT 331 (452)
Q Consensus 254 ~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~--~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~ 331 (452)
|+...+..++...|+||++..||.+.-.+...+|...+.- ...+.|.+|..+..+|-||+|..|+..++.|++.|..+
T Consensus 236 ft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D 315 (421)
T COG5159 236 FTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD 315 (421)
T ss_pred cccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC
Confidence 9988777888999999999999999877777777666542 24577899999999999999999999999999999888
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE-EEec
Q psy292 332 SVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI-INFA 410 (452)
Q Consensus 332 ~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi-V~f~ 410 (452)
++. ++|++.|++.++|.||..|++||++|.+++||+.+|++..+||..+++||.++-++|.+||++|+ |.++
T Consensus 316 ~~i-------RsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ 388 (421)
T COG5159 316 SFI-------RSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYG 388 (421)
T ss_pred HHH-------HHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeC
Confidence 877 48999999999999999999999999999999999999999999999999999999999999997 7777
Q ss_pred cCC
Q psy292 411 RNK 413 (452)
Q Consensus 411 ~~~ 413 (452)
.|.
T Consensus 389 ep~ 391 (421)
T COG5159 389 EPA 391 (421)
T ss_pred Ccc
Confidence 764
No 7
>KOG0687|consensus
Probab=100.00 E-value=1e-33 Score=271.32 Aligned_cols=293 Identities=17% Similarity=0.206 Sum_probs=255.8
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHhhccChHHHHHH
Q psy292 125 TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY-GSMEKKEKVTLILEQMRLCLAKKDYIRTQII 203 (452)
Q Consensus 125 ~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~-~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~ 203 (452)
.+....++-. |-|....-+++|.+|...||.+.|.+.+.. |+ ++++.+.|+++.+..+|+.++..|..-....
T Consensus 90 ~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~----t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 90 KIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRK----TYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHH----HHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 4444444433 666777788899999999999999999986 44 7899999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCC-CChh
Q psy292 204 SKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAP-YDNE 282 (452)
Q Consensus 204 ~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~-~~~~ 282 (452)
+.|++..+ +++|+ |++|+||+.|.|.|.++.|||.+|+..|.++..||++ .+.+. ++.+|.|+|+++ ..-+
T Consensus 164 iekak~li-E~GgD--WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS----~El~~-Y~~~v~Ytv~~g~i~le 235 (393)
T KOG0687|consen 164 IEKAKSLI-EEGGD--WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS----YELMS-YETFVRYTVITGLIALE 235 (393)
T ss_pred HHHHHHHH-HhCCC--hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc----eeccc-HHHHHHHHHHHhhheec
Confidence 99999998 77888 9999999999999999999999999999999999987 34554 788999999887 5679
Q ss_pred hhHhHHhhhhhhc----cCCchHHHHHHHHhcCCcccCc-hhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHH
Q psy292 283 QSDLTHRVLEDKL----LNEIPLYKGLLQWFTNPELIKW-SGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNI 357 (452)
Q Consensus 283 ~~~ll~~~~~~~~----~~~ip~~~~L~~~f~~~~Li~~-~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi 357 (452)
|.++.+++.+.|. ++.+|...+++.+++.++.-.| +.+...+...|+.+..+. -..+-.++|..+
T Consensus 236 R~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~----------~h~~yyvREMR~ 305 (393)
T KOG0687|consen 236 RVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLG----------PHYRYYVREMRR 305 (393)
T ss_pred cchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcc----------hHHHHHHHHHHH
Confidence 9999999998764 5778999999999998866554 333344467777777764 345567899999
Q ss_pred HHHHhh---ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHHH
Q psy292 358 RVMAKY---YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVN 434 (452)
Q Consensus 358 ~~isk~---Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~ 434 (452)
++++|. |.+++++.||+.||+|++.+++.|+++|..|+++|+||+++|||+.++|+..|.+++.-..+++-|+++|+
T Consensus 306 rvY~QlLESYrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vikqGd~LLnriQ 385 (393)
T KOG0687|consen 306 RVYAQLLESYRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIKQGDLLLNRIQ 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHhhhHHHHHHHH
Confidence 999975 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHh
Q psy292 435 NTTHLIN 441 (452)
Q Consensus 435 k~~~lI~ 441 (452)
|+++.|+
T Consensus 386 K~~rvi~ 392 (393)
T KOG0687|consen 386 KLSRVIN 392 (393)
T ss_pred HHHHHhc
Confidence 9999986
No 8
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-27 Score=224.31 Aligned_cols=301 Identities=16% Similarity=0.193 Sum_probs=250.8
Q ss_pred HHHHHHH-HHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc
Q psy292 117 EIKVKLI-ETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK 195 (452)
Q Consensus 117 ~~~~~l~-~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~ 195 (452)
+.+++=+ +.|+...+... |.|-+..-..+|.+|...+|.+.+.+.+..+- .+.|+.+.|+++.|..+||.+..+
T Consensus 92 eeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~---~~a~stg~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 92 EEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLM---RDAMSTGLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred HHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHhcccchhhHHHHHHHHHhhc
Confidence 4444433 57777666553 67788888999999999999999999998754 277888999999999999999999
Q ss_pred ChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Q psy292 196 DYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLM 275 (452)
Q Consensus 196 d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~I 275 (452)
|-.-....+.++++.+ +.+|+ |+++++|+.|.|.+.+..|+|.+|+..+.+++.||++ .+.+. +..+|-|++
T Consensus 167 d~~vV~e~lE~~~~~i-EkGgD--WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S----~El~s-Y~~~vrYa~ 238 (412)
T COG5187 167 DRKVVEESLEVADDII-EKGGD--WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES----SELIS-YSRAVRYAI 238 (412)
T ss_pred cHHHHHHHHHHHHHHH-HhCCC--HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc----ccccc-HHHHHHHHH
Confidence 9999999999999988 66777 9999999999999999999999999999999999987 34443 677888888
Q ss_pred hCC-CChhhhHhHHhhhhhhc----cCCchHH---HHHHHHhcCCccc-CchhHHHHHHHHhccCCCCCccchhhHHHHH
Q psy292 276 LAP-YDNEQSDLTHRVLEDKL----LNEIPLY---KGLLQWFTNPELI-KWSGLRQLYEEELFKTSVFNQSTEEGQKCFK 346 (452)
Q Consensus 276 La~-~~~~~~~ll~~~~~~~~----~~~ip~~---~~L~~~f~~~~Li-~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~ 346 (452)
.++ +.-+|.++.+++.+.|+ +++-..+ .++..+.+.++.- .|+.....|...|.++.... .
T Consensus 239 ~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~----------r 308 (412)
T COG5187 239 FCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLG----------R 308 (412)
T ss_pred HhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHH----------H
Confidence 887 56799999999998874 2333333 4556666666555 46777778888887766552 2
Q ss_pred HHHHHHHHHHHHHHHhh---ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHH
Q psy292 347 MLKHRVVEHNIRVMAKY---YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWS 423 (452)
Q Consensus 347 ~L~~~viEhNi~~isk~---Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~ 423 (452)
...-.++|...++++|. |...+++.||+.||+|++.+++-|..+|.+|+++|+|||++|+|+.++|+..|.++..-.
T Consensus 309 h~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFgVSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vV 388 (412)
T COG5187 309 HVDLFVREMRRRVYAQLLESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVV 388 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHH
Confidence 33345788888998875 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhH
Q psy292 424 ASLNELMKLVNNTTHLI 440 (452)
Q Consensus 424 ~~i~~ll~~v~k~~~lI 440 (452)
.+.+.|+..++|....+
T Consensus 389 kqGd~ll~klqKy~atv 405 (412)
T COG5187 389 KQGDDLLRKLQKYVATV 405 (412)
T ss_pred hcchHHHHHHHHHHHHH
Confidence 99999999999987654
No 9
>KOG2908|consensus
Probab=99.76 E-value=1.7e-15 Score=147.18 Aligned_cols=307 Identities=16% Similarity=0.224 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc
Q psy292 116 KEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK 195 (452)
Q Consensus 116 ~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~ 195 (452)
.+.+..++...-.--++||-. + .+...+-.+.+..+|..+|.+.|+++--.+...-.+..-.-...++.|++|..+
T Consensus 54 ~~~~l~lY~NFvsefe~kINp---l-slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~ 129 (380)
T KOG2908|consen 54 GDLLLQLYLNFVSEFETKINP---L-SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEIN 129 (380)
T ss_pred chHHHHHHHHHHHHHhhccCh---H-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 345566666443333444422 2 222334455567789999999999987554332223344445677899999999
Q ss_pred ChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHcCCCCCCCHHHHHHHHHHHHH
Q psy292 196 DYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCK---HYRAILTTPCIQSDPIQRHAVLQNVVL 272 (452)
Q Consensus 196 d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~---~y~e~~~t~~~~~d~~~~~~~Lk~~vl 272 (452)
|...++..+......+-.-++- .+.....||.....||...+||-..++ .|..+++.... ..+++...--.+.+
T Consensus 130 DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l--~~se~~~lA~~L~~ 206 (380)
T KOG2908|consen 130 DLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDL--SESEKQDLAFDLSL 206 (380)
T ss_pred cHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHH
Confidence 9999999888887654222332 133678999999999999999877554 46666554444 23455555567889
Q ss_pred HHHhCCCChhhhHhHHhh-hhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHH--HhccCCCCCccchhhHHHHHHHH
Q psy292 273 YLMLAPYDNEQSDLTHRV-LEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEE--ELFKTSVFNQSTEEGQKCFKMLK 349 (452)
Q Consensus 273 ~~ILa~~~~~~~~ll~~~-~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~--~L~~~~~~~~~~~~g~~~~~~L~ 349 (452)
+++|+..--.=..+++.+ .+.=...+-.++..++.+|..+++-+|......+.. .|.++..+ -+.+.-.
T Consensus 207 aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~--------L~qKI~L 278 (380)
T KOG2908|consen 207 AALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDF--------LLQKIRL 278 (380)
T ss_pred HHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHH--------HHHHHHH
Confidence 999996221222333333 232234566799999999999999888765544433 23222222 1224444
Q ss_pred HHHHHHHHHHHHhh--ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC----------hhH
Q psy292 350 HRVVEHNIRVMAKY--YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD----------PGE 417 (452)
Q Consensus 350 ~~viEhNi~~isk~--Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~----------~~~ 417 (452)
-+++| .++++| =..|||+.||+...+|.++||..+.+.++-|.|.|.|||++|+|.+.+..+ ..+
T Consensus 279 maLiE---i~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~ 355 (380)
T KOG2908|consen 279 LALIE---ITFSRPANERTLSFKEIAEATKIPNKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKD 355 (380)
T ss_pred HHHHH---HHhcCcchhccccHHHHHHHhCCCHHHHHHHHHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHH
Confidence 55666 677775 788999999999999999999999999999999999999999999998866 247
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q psy292 418 ILNEWSASLNELMKLVNNTTHLI 440 (452)
Q Consensus 418 ~l~~W~~~i~~ll~~v~k~~~lI 440 (452)
.+..|.+++.++-..|++-+|-|
T Consensus 356 rl~~W~~~v~~me~~ve~~~~~i 378 (380)
T KOG2908|consen 356 RLDEWNKDVKSMEGLVEHRGHEI 378 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999988866
No 10
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.66 E-value=4.3e-16 Score=130.12 Aligned_cols=104 Identities=26% Similarity=0.456 Sum_probs=87.4
Q ss_pred hHHHHHHHHhcCCcccCchhHHHHH-HHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCC
Q psy292 300 PLYKGLLQWFTNPELIKWSGLRQLY-EEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL 378 (452)
Q Consensus 300 p~~~~L~~~f~~~~Li~~~~~~~~~-~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~l 378 (452)
|+|..|+++|.++++..|.+....+ ...+. ++.+ ..+.+.+...+++++++.++++|++|++++||+.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l-------~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~ 72 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFK-DPFL-------AEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQL 72 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHH-CTTH-------HHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTC
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc-CccH-------HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhcc
Confidence 7899999999999887666655555 33232 2222 2477899999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 379 PIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 379 s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
+.+++|..+++||.+|.|.|+|||++|+|+|++
T Consensus 73 ~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 73 SEEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred chHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 999999999999999999999999999999974
No 11
>smart00753 PAM PCI/PINT associated module.
Probab=99.50 E-value=1.3e-13 Score=111.95 Aligned_cols=72 Identities=28% Similarity=0.491 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCCh
Q psy292 344 CFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDP 415 (452)
Q Consensus 344 ~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~ 415 (452)
++..+.+.++++++..++++|++|++++||+.+++|.+++|..+++||.+|.|.|+|||++|+|.|.+..+.
T Consensus 2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r 73 (88)
T smart00753 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR 73 (88)
T ss_pred hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchh
Confidence 467899999999999999999999999999999999999999999999999999999999999999987654
No 12
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.50 E-value=1.3e-13 Score=111.95 Aligned_cols=72 Identities=28% Similarity=0.491 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCCh
Q psy292 344 CFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDP 415 (452)
Q Consensus 344 ~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~ 415 (452)
++..+.+.++++++..++++|++|++++||+.+++|.+++|..+++||.+|.|.|+|||++|+|.|.+..+.
T Consensus 2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r 73 (88)
T smart00088 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR 73 (88)
T ss_pred hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchh
Confidence 467899999999999999999999999999999999999999999999999999999999999999987654
No 13
>KOG2581|consensus
Probab=99.46 E-value=2.6e-11 Score=120.51 Aligned_cols=277 Identities=18% Similarity=0.224 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc-hH-HHHHHHHHHHHHHhhccChHHHHHHHHHhh-hhhccCCC
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME-KK-EKVTLILEQMRLCLAKKDYIRTQIISKKIN-TKFFDDEK 216 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~-~~-~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~-~~~~~~~~ 216 (452)
-+++-.-++-.||..|+...--..|..+.. -.++. +. -+.-++-...|.||..+-|.+|...+.|+. |-. ..
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr--tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~---~s 242 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLR--TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEA---AS 242 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHH--HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccc---cc
Confidence 455556677788888886666555555442 12232 22 333344556899999999999998888775 222 11
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhcc
Q psy292 217 DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLL 296 (452)
Q Consensus 217 ~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~ 296 (452)
+ ....||--|.|++...+.||.+|.++|..+.--.+-...-.-+.++-|.+++-..|.+.-|+|+- +..|..
T Consensus 243 n---ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~-----F~Qp~~ 314 (493)
T KOG2581|consen 243 N---NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSV-----FRQPGM 314 (493)
T ss_pred c---HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhh-----hcCccH
Confidence 1 24567777789999999999999999999865432110112455677778888888888888863 334433
Q ss_pred -CCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHH
Q psy292 297 -NEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDL 375 (452)
Q Consensus 297 -~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~l 375 (452)
+.+-.|-.|.++--..+|.+|.+.++.|.+.|..+..+. -.-.|+.+||..-|+.||-.||||++..||..
T Consensus 315 ~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~--------LivRLR~NVIkTgIR~ISlsYSRISl~DIA~k 386 (493)
T KOG2581|consen 315 RKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT--------LIVRLRHNVIKTGIRKISLSYSRISLQDIAKK 386 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch--------HHHHHHHHHHHHhhhheeeeeeeccHHHHHHH
Confidence 234456679999888999999998899998887766552 23568889999999999999999999999999
Q ss_pred hCCChH-HHHHHHHhhhhcCcEEEEeccCCcEEEeccCC---ChhHHHHHHHHHHHHHHHHHHHHH
Q psy292 376 LGLPIE-ETEEFLSSMVVSKTITAKIDRPAGIINFARNK---DPGEILNEWSASLNELMKLVNNTT 437 (452)
Q Consensus 376 l~ls~~-evE~~ls~mI~~~~l~akIDq~~giV~f~~~~---~~~~~l~~W~~~i~~ll~~v~k~~ 437 (452)
|+++.+ ++|-.+++.|.+|-|.|+||-.+|.+.....- ++++.-..++.+|.-++++=+...
T Consensus 387 L~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~skE~~diy~t~epQ~~f~~rI~fCl~LhN~~v 452 (493)
T KOG2581|consen 387 LGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQSKETFDIYSTREPQTAFDERIRFCLQLHNEAV 452 (493)
T ss_pred hcCCCchhHHHHHHHHHHhccceeeeccccCceehhhhhhhhccCCchhhHhHHHHHHHHHHHHHH
Confidence 999655 59999999999999999999999987654331 123444567888888777766544
No 14
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.43 E-value=2.8e-12 Score=117.92 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=126.3
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHH
Q psy292 125 TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIIS 204 (452)
Q Consensus 125 ~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~ 204 (452)
-|....++-+ +.+..+....||.+|.+.||+++|.+.+....- ...+.+.+++.+|.++|++++.+||..+..++
T Consensus 22 elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 22 ELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARD---YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555454444 556666778899999999999999999998552 66788999999999999999999999999999
Q ss_pred HHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCC-CChhh
Q psy292 205 KKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAP-YDNEQ 283 (452)
Q Consensus 205 ~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~-~~~~~ 283 (452)
.|+...+ +.+|+ |+++++++.+.|.++.+.|+|.+|++.|.++..|++.. ...+.+ ....+++|++|+. .+-+|
T Consensus 97 ~ka~~~~-~~~~d--~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~-~~~el~-s~~d~a~Y~~l~aLat~~R 171 (177)
T PF10602_consen 97 EKAESLI-EKGGD--WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSL-QYTELI-SYNDFAIYGGLCALATLDR 171 (177)
T ss_pred HHHHHHH-hccch--HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCC-chhhhc-CHHHHHHHHHHHHHHhCCH
Confidence 9999887 66777 99999999999999999999999999999999988641 113344 4688888888877 45577
Q ss_pred hHhH
Q psy292 284 SDLT 287 (452)
Q Consensus 284 ~~ll 287 (452)
++|.
T Consensus 172 ~eLk 175 (177)
T PF10602_consen 172 SELK 175 (177)
T ss_pred HHHc
Confidence 7654
No 15
>KOG0686|consensus
Probab=99.35 E-value=9.3e-11 Score=116.85 Aligned_cols=257 Identities=14% Similarity=0.112 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-..|+..|...|++..|.+....+. +-.+ +-+.-+..++..|++.+..+||...-.+++|+...--..+.. -++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~R-dYCT--s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~-~q~v 227 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRAR-DYCT--SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL-AQEV 227 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhh-hhhc--chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH-HHhc
Confidence 34778999999999999999988744 2112 345778889999999999999999999988886542111110 0233
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCC-ChhhhHhHHhhhhhhc----cC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPY-DNEQSDLTHRVLEDKL----LN 297 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~-~~~~~~ll~~~~~~~~----~~ 297 (452)
-.+.+.+-|.-+...++|..|+++|..+--+- . |. .++-.=...++|..|+.. .-+|.+++-.+.++.. +.
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~-~--d~-~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle 303 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFLLAEFDH-C--DY-PEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE 303 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhCCCCc-c--Cc-cceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh
Confidence 33566777888888899999999999873221 1 21 233334566777776653 2366677655555432 35
Q ss_pred CchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhC
Q psy292 298 EIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLG 377 (452)
Q Consensus 298 ~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ 377 (452)
--|.+..++..|++. +|...++ +-+.++++-.. +---..|...|+.-+++.-++.+-.||+++.+++||..||
T Consensus 304 l~Pqlr~il~~fy~s---ky~~cl~-~L~~~k~~llL---D~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~ 376 (466)
T KOG0686|consen 304 LEPQLREILFKFYSS---KYASCLE-LLREIKPRLLL---DMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFN 376 (466)
T ss_pred cChHHHHHHHHHhhh---hHHHHHH-HHHHhccceee---chhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhc
Confidence 568999999999887 3432221 11223333221 1111357889999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC
Q psy292 378 LPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD 414 (452)
Q Consensus 378 ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~ 414 (452)
.|+.++|..|-++|.+|+|.||||+-++|+.-....+
T Consensus 377 ~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~~ 413 (466)
T KOG0686|consen 377 TSVAILESELLELILEGKISGRIDSHNKILYARDADS 413 (466)
T ss_pred ccHHHHHHHHHHHHHccchheeeccccceeeeccccc
Confidence 9999999999999999999999999999998766544
No 16
>KOG2582|consensus
Probab=99.10 E-value=7e-08 Score=95.34 Aligned_cols=212 Identities=18% Similarity=0.221 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHH-------HHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 179 EKVTLILEQMRLCLAKKDYIRTQIIS-------KKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 179 ~k~e~~Le~~rl~l~~~d~~~a~~~~-------~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
.....+-....+|+..+||.-+..+. .++++-+ ++..-+.|..|-|-++..-++|-.|--.|..+.
T Consensus 138 qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~-------~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 138 QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL-------DPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC-------CHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 44455566677888888877443211 1121111 255667777777888889999999888888888
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCCCC----hhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHH
Q psy292 252 TTPCIQSDPIQRHAVLQNVVLYLMLAPYD----NEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEE 327 (452)
Q Consensus 252 ~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~----~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~ 327 (452)
-+|.-.-..--.-...||++++.|+.+-- ..-++-..+..+ +..|.|.++.++|.++..-.-+.+...+...
T Consensus 211 ~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K----~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~r 286 (422)
T KOG2582|consen 211 TTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFK----PMSNPYHEFLNVYLKDSSTELRTLVKKHSER 286 (422)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcc----cCCchHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88865333222233467788888887621 111111122222 3456899999999887543233333344333
Q ss_pred hccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCC-ChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 328 LFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL-PIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 328 L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~l-s~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
+..+--. .-.+.+...+-.|||.+..|-|++++++.||++..| +.++||+.+.+||.+|++.+.|| |-
T Consensus 287 F~kDnnt--------~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~ 355 (422)
T KOG2582|consen 287 FTKDNNT--------GLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GM 355 (422)
T ss_pred HhhcCcH--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ce
Confidence 3222111 112455666788999999999999999999998887 57899999999999999999999 88
Q ss_pred EEeccC
Q psy292 407 INFARN 412 (452)
Q Consensus 407 V~f~~~ 412 (452)
|.|...
T Consensus 356 v~f~~n 361 (422)
T KOG2582|consen 356 VFFTDN 361 (422)
T ss_pred EEEecC
Confidence 877543
No 17
>KOG2758|consensus
Probab=98.69 E-value=8.8e-05 Score=72.67 Aligned_cols=345 Identities=13% Similarity=0.151 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH-----------------HhhhhhHHHHHHHHHHHHHhhhcCCCCH-----HHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITML-----------------TKRRSQLKQAVVKMIQECVTYVDKTPSK-----EIKV 120 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l-----------------~~~~~q~k~av~~~v~~~~~~~~~~~~~-----~~~~ 120 (452)
..+....+++-+.+..|-.++....| ...+.+++.+|+.+|..+. .|+. ..|.
T Consensus 36 eLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le-----~Pd~~~~~~~~k~ 110 (432)
T KOG2758|consen 36 ELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLE-----NPDLIAALRSDKD 110 (432)
T ss_pred HHHHHHHHHHcccchHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CHHHHHHHHhhhh
Confidence 45555666666666666665554443 3344455555555544321 2221 0010
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHH
Q psy292 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRT 200 (452)
Q Consensus 121 ~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a 200 (452)
-...|...+++..|- .|+...--+.|++..+-|+|.+|+..|--...=+ +.-+.... ..+---..--+...||.-|
T Consensus 111 -~~~~l~~L~e~ynf~-~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~-~~~d~n~l-salwGKlASEIL~qnWd~A 186 (432)
T KOG2758|consen 111 -RVQNLQHLQEHYNFT-PERIETLYKYAKFQYECGNYSGASDYLYFYRALV-SDPDRNYL-SALWGKLASEILTQNWDGA 186 (432)
T ss_pred -HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc-CCcchhhH-HHHHHHHHHHHHHhhHHHH
Confidence 011233444444433 4566677899999999999999999987543211 22222111 1111111112233466666
Q ss_pred HHHHHHhhhhhccCCCC--chHHHHHHHHHHHHHHHHH------------hhhHHHHHHH---HHHHHcCCCCCCCHHHH
Q psy292 201 QIISKKINTKFFDDEKD--DVQELKLKYYRLMIELDQH------------EGSYLATCKH---YRAILTTPCIQSDPIQR 263 (452)
Q Consensus 201 ~~~~~K~~~~~~~~~~~--~~~~lk~~~~~~~~~~~~~------------~~df~ea~~~---y~e~~~t~~~~~d~~~~ 263 (452)
-.-..|-...+ +.... +.+.++. ..|..| +.+-.+.+-+ |+.++.|.. |
T Consensus 187 ~edL~rLre~I-Ds~~f~~~~~~l~q------RtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~c-----P-- 252 (432)
T KOG2758|consen 187 LEDLTRLREYI-DSKSFSTSAQQLQQ------RTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSC-----P-- 252 (432)
T ss_pred HHHHHHHHHHH-cccccccHHHHHHH------HHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhC-----H--
Confidence 55444444333 21111 0012221 112222 2233344432 555544321 1
Q ss_pred HHHHHHHHHHHHhCCCChhhhHhH--HhhhhhhccCCchHHHHHHHHhcCCcccCchh---HHHHHHHHhccCCCCCccc
Q psy292 264 HAVLQNVVLYLMLAPYDNEQSDLT--HRVLEDKLLNEIPLYKGLLQWFTNPELIKWSG---LRQLYEEELFKTSVFNQST 338 (452)
Q Consensus 264 ~~~Lk~~vl~~ILa~~~~~~~~ll--~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~---~~~~~~~~L~~~~~~~~~~ 338 (452)
..|.|+..+.|... ...|.+|. -++...++..--...+.++.|.+.+ ..|+. -+.+.+..|.++...-
T Consensus 253 -hllRYLatAvvtnk-~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn--~DFdgAq~kl~eCeeVl~nDfFLv--- 325 (432)
T KOG2758|consen 253 -HLLRYLATAVVTNK-RRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVN--YDFDGAQKKLRECEEVLVNDFFLV--- 325 (432)
T ss_pred -HHHHHHHHHhhcch-HhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhc--cchHHHHHHHHHHHHHHhcchhHH---
Confidence 13566665554442 22233222 1222222221111344555555443 14543 3345667777665431
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHH
Q psy292 339 EEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEI 418 (452)
Q Consensus 339 ~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~ 418 (452)
....++...-+---.-.+-+.-++||++-||..|+++++++|.-+.++|.+-+|.||||-..|-|+.+.+.- ..
T Consensus 326 ----a~l~~F~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~--s~ 399 (432)
T KOG2758|consen 326 ----ALLDEFLENARLLIFETFCRIHQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTV--SP 399 (432)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCC--CH
Confidence 111222221111111233445789999999999999999999999999999999999999999999987642 24
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHH
Q psy292 419 LNEWSASLNELMKLVNNTTHLINKE 443 (452)
Q Consensus 419 l~~W~~~i~~ll~~v~k~~~lI~ke 443 (452)
.++-.+++.+|.-+-+++...|.|-
T Consensus 400 ~qQ~ie~tksLS~rsq~la~~lek~ 424 (432)
T KOG2758|consen 400 HQQLIEKTKSLSFRSQNLAQQLEKK 424 (432)
T ss_pred HHHHHHhccccchhHHHHHHHHHHH
Confidence 4555777777777777777666653
No 18
>KOG1076|consensus
Probab=98.62 E-value=3.7e-05 Score=81.70 Aligned_cols=71 Identities=24% Similarity=0.545 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHH----HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC
Q psy292 344 CFKMLKHRVVEHNIRV----MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD 414 (452)
Q Consensus 344 ~~~~L~~~viEhNi~~----isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~ 414 (452)
-..-|.++|.|.-|+. ++.+|++||++.||++|+||+..|-..+|+||...-|.|++|||.++|+|++...
T Consensus 692 V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmiineEl~AslDqpt~~iv~hrvE~ 766 (843)
T KOG1076|consen 692 VLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVHSIISKMIINEELHASLDQPTQCIVMHRVEP 766 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhHHHHHHHHHHHHHhhhccCCCcceEEEeeccc
Confidence 3466778888888874 6788999999999999999999999999999999999999999999999998654
No 19
>KOG2753|consensus
Probab=97.98 E-value=0.0038 Score=61.65 Aligned_cols=179 Identities=17% Similarity=0.141 Sum_probs=109.2
Q ss_pred HHHHHhhhHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHH
Q psy292 232 ELDQHEGSYL---ATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQW 308 (452)
Q Consensus 232 ~~~~~~~df~---ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~ 308 (452)
.+|.+-+++. ++++-+-+.+.|++-. |...+...--..|.-++-+|..-.=..|+.-.-- ..+..- .+..|++.
T Consensus 170 ~v~~al~~~k~~~~s~kvmt~lLgtyt~d-nas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV-~qLE~d-~i~qLL~I 246 (378)
T KOG2753|consen 170 AVHKALKDNKSVDESSKVMTELLGTYTED-NASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPV-KQLEGD-LIHQLLKI 246 (378)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHcCCceeccchhccCchH-HHhccc-hHHHHHHH
Confidence 3444444444 6888888888888763 3223332234455666666632111111111100 012222 26778999
Q ss_pred hcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHH
Q psy292 309 FTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLS 388 (452)
Q Consensus 309 f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls 388 (452)
|.+.-|- .|-.+-.+|+-| ....|-.| ++.-+.++---+..++.+-..|+++.|++.|++..+++|-.+.
T Consensus 247 F~s~~L~-------aYveF~~~N~~F--vqs~gl~~-E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVI 316 (378)
T KOG2753|consen 247 FVSGKLD-------AYVEFVAANSGF--VQSQGLVH-EQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVI 316 (378)
T ss_pred HHhcchH-------HHHHHHHhChHH--HHHhcccH-HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHH
Confidence 9888664 444444444444 22222111 2333334444445566789999999999999999999999999
Q ss_pred hhhhcCcEEEEeccCCcEEEeccCCC----------hhHHHHHHH
Q psy292 389 SMVVSKTITAKIDRPAGIINFARNKD----------PGEILNEWS 423 (452)
Q Consensus 389 ~mI~~~~l~akIDq~~giV~f~~~~~----------~~~~l~~W~ 423 (452)
+.|..|.+.|||||.++.|+..+... ..+.|+.|.
T Consensus 317 daI~aklV~~kidq~~~~viVs~~~hR~FG~~qW~~L~~kL~aw~ 361 (378)
T KOG2753|consen 317 DAIRAKLVEGKIDQMNRTVIVSSSTHRTFGKQQWQQLRDKLAAWG 361 (378)
T ss_pred HHHHHHHHHhhHHhhcceEEeehhhhhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999876654421 246788885
No 20
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.073 Score=52.49 Aligned_cols=187 Identities=18% Similarity=0.219 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHh-hcC
Q psy292 57 DMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRTV-TEG 132 (452)
Q Consensus 57 d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~~-~e~ 132 (452)
|....-....+.+..+...|+|+.-.+.+.....-+-.+ +...++....+.....+. +.+.-+..++ ++.-. ..|
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 333344455555555555566655555444333221111 112223222333333322 3333333333 33322 234
Q ss_pred cchHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 133 KIYVEVERARLTHILAKMKEDE-GDVTEAANIIQELQVETYGS-MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 133 ki~lE~er~~l~~~La~i~e~~-gd~~eA~~iL~~l~~Et~~~-~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+. ..-+++...+|++|+.. |++++|.+.++... +.|.. -....-.+.++..+.++...++|..|..++.++...
T Consensus 109 ~~---~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~-~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 109 RF---SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA-ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -H---HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH-HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 32 23578889999999999 99999999999865 44533 244577888899999999999999999999998876
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 211 FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 211 ~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
.+..+.. .+..+ .|+...+..+...+|+..|-+.|...
T Consensus 185 ~l~~~l~-~~~~~-~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 185 CLENNLL-KYSAK-EYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp CCCHCTT-GHHHH-HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhccccc-chhHH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6544322 02222 23444566777777777666555554
No 21
>KOG2688|consensus
Probab=97.30 E-value=0.0029 Score=64.54 Aligned_cols=206 Identities=12% Similarity=0.123 Sum_probs=131.2
Q ss_pred HHHHhhccChHHHHHHHHHhhhhh-ccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q psy292 188 MRLCLAKKDYIRTQIISKKINTKF-FDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAV 266 (452)
Q Consensus 188 ~rl~l~~~d~~~a~~~~~K~~~~~-~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~ 266 (452)
.++|+..+...-++.+.+-..... ....+. -.-...|..|.|+++..+.||.+|+.+..+++..-...-- ......
T Consensus 170 f~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~--l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~-~n~~~i 246 (394)
T KOG2688|consen 170 FQIYFRIEKLLLCKNLIRAFDQSGSDISDFP--LAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLL-KNKRLI 246 (394)
T ss_pred HHHHHHHhhHHHhHHHHHHhhccccchhhcc--cccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHH-hhhhhH
Confidence 566777766666666555443331 000111 2234555566699999999999999999999765321000 111225
Q ss_pred HHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHH
Q psy292 267 LQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFK 346 (452)
Q Consensus 267 Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~ 346 (452)
+.|++-++++....|... ++.+.- +..+..|+++-..+++-.|....+.-+..+....++. + +.
T Consensus 247 liylip~~~llg~~Pt~~-lL~~~~-------~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l-~-------l~ 310 (394)
T KOG2688|consen 247 LIYLIPTGLLLGRIPTKE-LLDFYT-------LDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYL-T-------LE 310 (394)
T ss_pred HHHHhHHHHHhccCcchh-hHhHhh-------HHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHH-H-------hh
Confidence 788888888888765432 222211 4467778888888877666555555555554444442 1 11
Q ss_pred HHHHHHHHHHH-HHHHhhc---cceeHHHHHHHhCC------ChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCC
Q psy292 347 MLKHRVVEHNI-RVMAKYY---TRITLQRMCDLLGL------PIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413 (452)
Q Consensus 347 ~L~~~viEhNi-~~isk~Y---s~Itl~~La~ll~l------s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~ 413 (452)
.+. -+.=||+ ..+.+.- +++.++++-..+.. +.+++|-.++.+|..|+|.|.|+.....++|.+..
T Consensus 311 ~l~-lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~ 386 (394)
T KOG2688|consen 311 KLP-LVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKD 386 (394)
T ss_pred hhh-HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCC
Confidence 211 2233333 3455665 88888888777755 36999999999999999999999999998887653
No 22
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.17 E-value=0.29 Score=48.26 Aligned_cols=220 Identities=12% Similarity=0.085 Sum_probs=134.1
Q ss_pred hhhHHHHHHHh-cCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---hhhhHHHHH
Q psy292 24 EKIPAAIKMAA-EGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK---RRSQLKQAV 99 (452)
Q Consensus 24 ~~~~~~~~~~~-~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~---~~~q~k~av 99 (452)
....+|-...+ .+++++|.+-+...-.-.....+....-+++...+.+|.+. +++...+.+..-+. ..|.. ...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~-~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF-SQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H-HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH-HHH
Confidence 45666655544 57788888877774222221334444556778888877766 88888777665553 34444 334
Q ss_pred HHHHHHHHhhhcCC-CCHHHHHHHHH-HHHHh-hcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cCc
Q psy292 100 VKMIQECVTYVDKT-PSKEIKVKLIE-TLRTV-TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY-GSM 175 (452)
Q Consensus 100 ~~~v~~~~~~~~~~-~~~~~~~~l~~-~L~~~-~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~-~~~ 175 (452)
++....+-..+.+. .+.+.-++.++ .+.-. .++. ......+..++|.++.+.|+|++|.++++++-.... ..+
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 56666777776665 67777788777 55332 3343 233677889999999999999999999998764322 223
Q ss_pred chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 176 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 176 ~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
..-.--+++|..+=++|..+|++.|....++.......=.+. .+.++-.....+.=......|-+|...|..+
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s--~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS--REYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS--HHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 333344677888888999999999999988876442111222 5666544433333333445566676666655
No 23
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=97.04 E-value=0.1 Score=54.00 Aligned_cols=45 Identities=27% Similarity=0.402 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----HHHHHHHhhccceeHHHHHHHhCCChHHHHHHHH
Q psy292 344 CFKMLKHRVVE----HNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLS 388 (452)
Q Consensus 344 ~~~~L~~~viE----hNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls 388 (452)
+++.+.+.|.. -+||.+-|.|++|+++.||.+++++++++-..|.
T Consensus 295 Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll 343 (404)
T PF10255_consen 295 QLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLL 343 (404)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHH
Confidence 34445555444 4778888999999999999999999987665443
No 24
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.061 Score=54.24 Aligned_cols=241 Identities=10% Similarity=0.085 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHHHHhc----cCcchHHHHHHH-H--HHHHHHhhccChHHHHHHHHHhhhhhccCCCC--chHHHHHH
Q psy292 155 GDVTEAANIIQELQVETY----GSMEKKEKVTLI-L--EQMRLCLAKKDYIRTQIISKKINTKFFDDEKD--DVQELKLK 225 (452)
Q Consensus 155 gd~~eA~~iL~~l~~Et~----~~~~~~~k~e~~-L--e~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~--~~~~lk~~ 225 (452)
...+++.+++....--+. ..+....|.-.+ + ....+|+..+...-++.+.+--.+..+ ++. .+-.-.+.
T Consensus 144 d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~--~Di~~~~~sq~v~ 221 (413)
T COG5600 144 DNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSM--PDISEYQKSQVVV 221 (413)
T ss_pred hhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc--cccchhhhcceee
Confidence 355666666666554332 113344444422 2 235678888888888766653333211 110 00122345
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHHHhCC-CChhhhHhHHhhhhhhccCCchHHH
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILTTPCI-QSDPIQRHAVLQNVVLYLMLAP-YDNEQSDLTHRVLEDKLLNEIPLYK 303 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~-~~d~~~~~~~Lk~~vl~~ILa~-~~~~~~~ll~~~~~~~~~~~ip~~~ 303 (452)
|.-|.|+|+...++|-+|+-.+.++|..-.- ....-++ .+-+++..++|.. ..|-+. +|.+-- + ...+.
T Consensus 222 f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~r--Il~~~ipt~Llv~~~~Ptk~-~L~r~~---~---~s~~~ 292 (413)
T COG5600 222 FHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKR--ILPYYIPTSLLVNKFPPTKD-LLERFK---R---CSVYS 292 (413)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchhe--ehhHHhhHHHHhCCCCCchH-HHHhcc---c---cchhH
Confidence 5566699999999999999999999765322 1111122 3455555555554 555443 443321 2 44778
Q ss_pred HHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHH--HHhhc--cc--eeHHHHHHHhC
Q psy292 304 GLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRV--MAKYY--TR--ITLQRMCDLLG 377 (452)
Q Consensus 304 ~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~--isk~Y--s~--Itl~~La~ll~ 377 (452)
-|+++-..+++-.|......-++.+....+.- -+.....-|.-.|+.. ..-.. ++ .++-.++..+.
T Consensus 293 ~LvkavrsGni~~~~~~l~~ner~~~~~~l~l--------tl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls 364 (413)
T COG5600 293 PLVKAVRSGNIEDFDLALSRNERKFAKRGLYL--------TLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLS 364 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHhHHHHHHcchHH--------HHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHcc
Confidence 88999888888666555544444444333321 0111122234445443 11112 23 23334444443
Q ss_pred C-----ChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC
Q psy292 378 L-----PIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD 414 (452)
Q Consensus 378 l-----s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~ 414 (452)
. +.++||-.++.||..|.+.|.|-.-...|+|.+..+
T Consensus 365 ~~dn~~~~~~VEciL~tlI~~G~lrgYis~s~~~vV~sk~~p 406 (413)
T COG5600 365 AIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTVVFSKKDP 406 (413)
T ss_pred CCCcccChHHHHHHHHHHHhhhhhhheecccceEEEEecCCC
Confidence 3 379999999999999999999999999999987643
No 25
>KOG1840|consensus
Probab=96.76 E-value=0.16 Score=54.30 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHH----HHHHHhhhhhHH-HHHHHHHHHHHhhhcCCCCHHHHHHHHH-HH--HHhhcCc
Q psy292 62 GRILVAIVQICFEAKNWTALNEH----ITMLTKRRSQLK-QAVVKMIQECVTYVDKTPSKEIKVKLIE-TL--RTVTEGK 133 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~----~~~l~~~~~q~k-~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L--~~~~e~k 133 (452)
-.++..++..|+..|+++.-... +..+.+..| ++ ..|+.|.+.+-.++........-+-+++ +| +.-.-|.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 34677799999999999988654 445666666 43 6677777755555544444444455566 44 3223344
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 134 IYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGS---MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 134 i~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~---~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
... -++-+-..||..|...|++.+|...++..- +.+.. -+..+-...+.+.+-++-..+.+..|..+..++...
T Consensus 278 ~h~--~va~~l~nLa~ly~~~GKf~EA~~~~e~Al-~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 278 DHP--AVAATLNNLAVLYYKQGKFAEAEEYCERAL-EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred CCH--HHHHHHHHHHHHHhccCChHHHHHHHHHHH-HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 322 356666889999999999999998877643 44322 334466667778888888899999999999988877
Q ss_pred hccCCCCchHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 211 FFDDEKDDVQE-LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 211 ~~~~~~~~~~~-lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+.+.+|- .+ .-..+|.-++..+...+.|.+|-..|.+++...
T Consensus 355 ~~~~~g~--~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 355 YLDAPGE--DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHhhccc--cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6544442 22 344677778899999999999999998887654
No 26
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.74 E-value=0.25 Score=46.77 Aligned_cols=184 Identities=10% Similarity=0.057 Sum_probs=110.8
Q ss_pred hhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHH-
Q psy292 20 PTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQA- 98 (452)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~a- 98 (452)
...+..+..+....+.|++++|+..+..+-+.- .+..+...+...++..++..|+|+...+.+..+.+....-...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY---PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 334457788888889999999999888854422 3445666788999999999999999999888776533211000
Q ss_pred HHHHHHHHHhhhcCCC------C-HHHHHHHHHHHHHhhcCcchHHH----------HHHHHHHHHHHHHHhcCCHHHHH
Q psy292 99 VVKMIQECVTYVDKTP------S-KEIKVKLIETLRTVTEGKIYVEV----------ERARLTHILAKMKEDEGDVTEAA 161 (452)
Q Consensus 99 v~~~v~~~~~~~~~~~------~-~~~~~~l~~~L~~~~e~ki~lE~----------er~~l~~~La~i~e~~gd~~eA~ 161 (452)
-+ +......+..... + .+.-.+.++.+....++..+... ........+|.+|...|++.+|.
T Consensus 108 ~a-~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 108 YA-YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HH-HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 00 0000111111000 0 01112222222111222111110 01122346789999999999999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 162 NIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 162 ~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..++.+... +.. ...-.+.++...+.+...|++..|..+.......
T Consensus 187 ~~~~~al~~-~p~--~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 187 NRFETVVEN-YPD--TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHH-CCC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999987643 221 1344667788889999999999998877765443
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.66 E-value=0.91 Score=46.11 Aligned_cols=204 Identities=15% Similarity=0.083 Sum_probs=125.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy292 27 PAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQEC 106 (452)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~ 106 (452)
..+......|++++|++.+...-+.. .+ ...+...++.+++..|+++...+.+..+...-.............+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~---p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD---PE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC---cc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 33445566788999999888854321 11 2456778899999999999998887766542111111111111221
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q psy292 107 VTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le 186 (452)
........+.+.-..+++....... ........|+.++...|++++|.+.+..+... ...-.......++..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGD-------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHH
Confidence 2211122222333333332221111 12334567899999999999999999887532 111111234556677
Q ss_pred HHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 187 QMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 187 ~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..++++..+++..|....+++.... ++. .. . +...+..+...++|.+|...|.++...
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~---p~~--~~--~--~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD---PQC--VR--A--SILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC---cCC--HH--H--HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888999999999999999886643 222 22 2 334588888999999999999998753
No 28
>KOG2003|consensus
Probab=96.66 E-value=0.19 Score=51.91 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=128.0
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhcc--CHHHHHHHHHH-HHhhhhhHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAK--NWTALNEHITM-LTKRRSQLKQAVVK 101 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~--~~~~l~~~~~~-l~~~~~q~k~av~~ 101 (452)
.+.+|-.+.++|+++.|++.|..+|++ |....+.+...+.-++|-+| ++....++-.. |.-.| +-..|.+.
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~k-----dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~n 495 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKK-----DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTN 495 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhc-----cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhc
Confidence 466777888999999999999999984 33434456667777777643 44333332111 11111 11111110
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhccCcch
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKM---KEDEGDVTEAANIIQELQVETYGSMEK 177 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i---~e~~gd~~eA~~iL~~l~~Et~~~~~~ 177 (452)
--+ +.|. --|.+--.++++ .|+. .+.++..|-.| ++..|+.++|++..-.++.= -
T Consensus 496 kgn--~~f~--ngd~dka~~~ykeal~n-----------dasc~ealfniglt~e~~~~ldeald~f~klh~i------l 554 (840)
T KOG2003|consen 496 KGN--IAFA--NGDLDKAAEFYKEALNN-----------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI------L 554 (840)
T ss_pred CCc--eeee--cCcHHHHHHHHHHHHcC-----------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------H
Confidence 000 0000 012244444444 3421 23344444443 78899999999998888742 1
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCC
Q psy292 178 KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQ 257 (452)
Q Consensus 178 ~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~ 257 (452)
..-++++..++.+|-...|..+|-.++..++..+ +++ +..--+ .+.+|+.++|=..||+|||++|-.|.+.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sli---p~d--p~ilsk----l~dlydqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---PND--PAILSK----LADLYDQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---CCC--HHHHHH----HHHHhhcccchhhhhhhhhhcccccCcc
Confidence 3456788888999999999999999998888887 333 333222 2788999999999999999999998774
Q ss_pred CCHHHHHH
Q psy292 258 SDPIQRHA 265 (452)
Q Consensus 258 ~d~~~~~~ 265 (452)
-...+|+.
T Consensus 626 ie~iewl~ 633 (840)
T KOG2003|consen 626 IETIEWLA 633 (840)
T ss_pred hHHHHHHH
Confidence 33345543
No 29
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.64 E-value=0.2 Score=44.10 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=89.1
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.....+....+.++...+.+.+-.+.+.- ++......+...+++.++..|+++.-...+..+...
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------------ 77 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------------ 77 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------
Confidence 34455555556676766655566665532 233344567777889999999998886665544421
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
.|+... +.....+||.++...|++++|...|+.+.- ...+..+
T Consensus 78 ---------~~d~~l---------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-------~~~~~~~ 120 (145)
T PF09976_consen 78 ---------APDPEL---------------------KPLARLRLARILLQQGQYDEALATLQQIPD-------EAFKALA 120 (145)
T ss_pred ---------CCCHHH---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccC-------cchHHHH
Confidence 123211 344567789999999999999999977442 2234446
Q ss_pred HHHHHHHHhhccChHHHHHHHHHh
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~ 207 (452)
....-.+++..||+..|...+.++
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666788899999999999888765
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.60 E-value=1.1 Score=49.79 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 23 DEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
+..+..++...+.|++++|+..+....+.. +. ...+...++.+++..|+|+.....+.....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 84 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKD--PN----DAEARFLLGKIYLALGDYAAAEKELRKALS 84 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457888999999999999999988844321 12 235778899999999999999888777664
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.53 E-value=1.1 Score=45.49 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
....|+.++...|++++|.+.+..+... +.....+.+...+.++...+++..|....+++.... ++. ..
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~---~~ 284 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---PGA---DL 284 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc---hH
Confidence 3355778888888888888888776531 122233445556677778888888877777765442 221 11
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
....+.++...+++-+|...|.+++..
T Consensus 285 ----~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 285 ----LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 134577777788888888888877665
No 32
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.51 E-value=0.42 Score=42.00 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHH
Q psy292 120 VKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIR 199 (452)
Q Consensus 120 ~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~ 199 (452)
...++.|..--.+..|- ....+.+|+.+...|++++|...|+.+... .-++..+--..|...++++..+++..
T Consensus 31 ~~~~~~l~~~~~~s~ya----~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 31 EAAAEQLAKDYPSSPYA----ALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred HHHHHHHHHHCCCChHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33445444333343332 345577899999999999999999998742 23445566677888999999999999
Q ss_pred HHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 200 a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
|...+..+.. . ..+-.+..+.|.++...+++-+|-..|..+
T Consensus 104 Al~~L~~~~~-----~-----~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPD-----E-----AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccC-----c-----chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9888865221 1 234456778899999999999999999875
No 33
>KOG2072|consensus
Probab=96.39 E-value=2.2 Score=47.31 Aligned_cols=69 Identities=16% Similarity=0.345 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhC-CChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 343 KCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLG-LPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 343 ~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~-ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
.+...|...++-.-+..+|+.|.+|++++|.++.- ++.-++|+.+.+.+..+-+..+||...+.|.|..
T Consensus 424 QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 424 QYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhccceeEEeccccceeeecc
Confidence 45677888888888889999999999999999876 5889999999999999999999999999999983
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.15 E-value=3 Score=46.45 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHH----
Q psy292 27 PAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKM---- 102 (452)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~---- 102 (452)
.-+......|++++|++.+....+.. +.+ ..+...++.++...|+++...+.+..+......-..+...+
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA--PDS----PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34555666788888888776654322 111 23566777888888888888777665543211111111111
Q ss_pred -----HHHHHhh----hcCCCCH-HHHHHHHHHHHHhhcCcc-----hHHH------HHHHHHHHHHHHHHhcCCHHHHH
Q psy292 103 -----IQECVTY----VDKTPSK-EIKVKLIETLRTVTEGKI-----YVEV------ERARLTHILAKMKEDEGDVTEAA 161 (452)
Q Consensus 103 -----v~~~~~~----~~~~~~~-~~~~~l~~~L~~~~e~ki-----~lE~------er~~l~~~La~i~e~~gd~~eA~ 161 (452)
...++.+ +...|+. +....+...+.. .|+. +++. ........++.++...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA--AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 0111111 1111221 111111111100 0000 0000 01123344577777777777777
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHH
Q psy292 162 NIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYL 241 (452)
Q Consensus 162 ~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ 241 (452)
+.+...... ..-+ ..+.....++...|++..|...+.++.... +++ . ..+...+.++...+++.
T Consensus 724 ~~~~~~~~~--~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~--~----~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 724 QAYRKALKR--APSS-----QNAIKLHRALLASGNTAEAVKTLEAWLKTH---PND--A----VLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHhh--CCCc-----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC--H----HHHHHHHHHHHHCcCHH
Confidence 777765431 1111 344556667777778877777776655442 322 2 22344577777888888
Q ss_pred HHHHHHHHHHcCC
Q psy292 242 ATCKHYRAILTTP 254 (452)
Q Consensus 242 ea~~~y~e~~~t~ 254 (452)
+|...|..+....
T Consensus 788 ~A~~~~~~~~~~~ 800 (899)
T TIGR02917 788 KAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887654
No 35
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=95.98 E-value=0.047 Score=48.28 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHh
Q psy292 297 NEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLL 376 (452)
Q Consensus 297 ~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll 376 (452)
+.+-..-.|.+...+++ |+ .|-..++.++-- ++.......|..++++.-+..+++.|++|+++.+++.|
T Consensus 39 ~~i~~i~~l~~~L~~~~---~~----~~~~~~~~~~~~----~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~L 107 (143)
T PF10075_consen 39 PEIKAIWSLGQALWEGD---YS----KFWQALRSNPWS----PDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEML 107 (143)
T ss_dssp TTHHHHHHHHHHHHTT----HH----HHHHHS-TT--------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCC---HH----HHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHh
Confidence 66667777888888884 33 333444443211 01111235678899999999999999999999999999
Q ss_pred CCChHHHHHHHHhh
Q psy292 377 GLPIEETEEFLSSM 390 (452)
Q Consensus 377 ~ls~~evE~~ls~m 390 (452)
|++++++++.+.+-
T Consensus 108 g~~~~el~~~~~~~ 121 (143)
T PF10075_consen 108 GLSEEELEKFIKSR 121 (143)
T ss_dssp TS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc
Confidence 99988887776665
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.95 E-value=0.96 Score=46.88 Aligned_cols=201 Identities=12% Similarity=0.067 Sum_probs=109.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHH---
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQE--- 105 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~--- 105 (452)
++-....|++++|+..+..+-+.. .+ ...++..+.++|...|+|+...+.+..+.+....-+......-+.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~---P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA---PR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC---CC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 444455677777777776643211 11 235677778888899999999888888886421111111111000
Q ss_pred -HHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--------cCc-
Q psy292 106 -CVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY--------GSM- 175 (452)
Q Consensus 106 -~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~--------~~~- 175 (452)
.+......++.+...++.+.+-... .....+...+|..+...|+.++|.+++.+...... +.+
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~-------~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~ 306 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKT-------RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLK 306 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHH-------hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc
Confidence 0111111122222222222220000 01223445567777777777777777766543210 000
Q ss_pred -chHHH---------------HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhh
Q psy292 176 -EKKEK---------------VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGS 239 (452)
Q Consensus 176 -~~~~k---------------~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~d 239 (452)
++..+ .+..+...|+|+..++|.+|.....++...- |++ .. +..++..+.+.++
T Consensus 307 ~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~---P~~--~~-----~~~La~~~~~~g~ 376 (398)
T PRK10747 307 TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR---PDA--YD-----YAWLADALDRLHK 376 (398)
T ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCH--HH-----HHHHHHHHHHcCC
Confidence 11111 2345566888888888888888888776542 322 11 2345788888888
Q ss_pred HHHHHHHHHHHHc
Q psy292 240 YLATCKHYRAILT 252 (452)
Q Consensus 240 f~ea~~~y~e~~~ 252 (452)
--+|..+|.+.+.
T Consensus 377 ~~~A~~~~~~~l~ 389 (398)
T PRK10747 377 PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887754
No 37
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.92 E-value=2.4 Score=43.41 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=123.5
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhh-hhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEK-QTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek-~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.+..++.+++.|+.++|.+.+..+-+ .+| ..+++.-..+.|.+.|+|+.+...+..|+|.+-.-+.-..++=
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr-------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le 228 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPR-------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE 228 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH
Confidence 46667888889999999999999554 333 3578888899999999999999999999975432233333321
Q ss_pred HHHHh-hhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHH
Q psy292 104 QECVT-YVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA--RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180 (452)
Q Consensus 104 ~~~~~-~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~--~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k 180 (452)
+++.. .+.+..+.+.-.. +.+-|.-.+.+. |. .+...+|.-+.+-|+.++|.+++.+-. +..-+..
T Consensus 229 ~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~l-----r~~p~l~~~~a~~li~l~~~~~A~~~i~~~L----k~~~D~~- 297 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEG-LKTWWKNQPRKL-----RNDPELVVAYAERLIRLGDHDEAQEIIEDAL----KRQWDPR- 297 (400)
T ss_pred HHHHHHHHHHHhccccchH-HHHHHHhccHHh-----hcChhHHHHHHHHHHHcCChHHHHHHHHHHH----HhccChh-
Confidence 11111 1111111111111 222333333221 33 466778999999999999999998644 3322223
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
|...==++..+|..+....+.+..... +++ +.+ ....|+++.-++.|-.|..+|..+..--
T Consensus 298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h---~~~--p~L----~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQH---PED--PLL----LSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred ----HHHHHhhcCCCCchHHHHHHHHHHHhC---CCC--hhH----HHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 222222456677777766666665554 333 433 3456899999999999988888665443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.77 E-value=0.87 Score=47.31 Aligned_cols=203 Identities=14% Similarity=0.144 Sum_probs=112.0
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH-HHHHHHH-HHH
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK-QAVVKMI-QEC 106 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k-~av~~~v-~~~ 106 (452)
++-..+.|++++|.+.+..+-+.. +.+ ..++.....++...|+|+...+.+..+.+.. -.. .....+- ...
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~--P~~----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA--PRH----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-LFDDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455566777888888777754432 121 2467778888889999998888887777531 111 1111110 001
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q psy292 107 VTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le 186 (452)
...+.+... +.-...+...|.-.+.+ .....++...++..+...|++++|.+++++..... ++.....+.+-
T Consensus 233 ~~~l~~~~~-~~~~~~L~~~~~~~p~~---~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l 304 (409)
T TIGR00540 233 IGLLDEAMA-DEGIDGLLNWWKNQPRH---RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLC 304 (409)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHHCCHH---HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHH
Confidence 111110000 00012222333222211 11134566778999999999999999999876432 22221111111
Q ss_pred HHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHcC
Q psy292 187 QMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYR--AILTT 253 (452)
Q Consensus 187 ~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~--e~~~t 253 (452)
..-..+..+|...+...+.+..... +++ ++ ..+...+|.++...++|-+|-++|. .++..
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~---p~~--~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNV---DDK--PK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhC---CCC--hh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 1112233467777767776665543 444 43 3455667999999999999998777 35443
No 39
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.50 E-value=1.6 Score=40.72 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=98.4
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHH-HHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQA-VVKM 102 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~a-v~~~ 102 (452)
....++....+.|++.+|++.|-.+...- ....+...+...++..+++.|+++.....+..+.+.+..-+.+ -+-.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRY---PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999988754 3456677899999999999999999999888887655444211 1111
Q ss_pred HHHHHhh--h----cCCCCHHHH---HHHHHHHHHhhcCcchHHH----------HHHHHHHHHHHHHHhcCCHHHHHHH
Q psy292 103 IQECVTY--V----DKTPSKEIK---VKLIETLRTVTEGKIYVEV----------ERARLTHILAKMKEDEGDVTEAANI 163 (452)
Q Consensus 103 v~~~~~~--~----~~~~~~~~~---~~l~~~L~~~~e~ki~lE~----------er~~l~~~La~i~e~~gd~~eA~~i 163 (452)
......+ . ..-.|...- ...++.+-..-++.-|.+. .-++=....|++|.+.|.+..|..-
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 1111110 0 001222211 2233333333333334332 2233345678999999999999999
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHhhccChH
Q psy292 164 IQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYI 198 (452)
Q Consensus 164 L~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~ 198 (452)
++.+.. .|....-.+. .+....+.|...|+..
T Consensus 164 ~~~v~~-~yp~t~~~~~--al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 164 FQYVIE-NYPDTPAAEE--ALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHH-HSTTSHHHHH--HHHHHHHHHHHTT-HH
T ss_pred HHHHHH-HCCCCchHHH--HHHHHHHHHHHhCChH
Confidence 998763 4543333333 3444455566666655
No 40
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.34 E-value=2.9 Score=40.47 Aligned_cols=182 Identities=11% Similarity=0.073 Sum_probs=118.7
Q ss_pred ccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH
Q psy292 17 DYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK 96 (452)
Q Consensus 17 d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k 96 (452)
+...-++.+-.++....+.|++++|++.+-.++++- .-++|+.++...++..+++.++++.....+....+.+++-+
T Consensus 29 ~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~---p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 29 VYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRH---PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 344445678888999999999999999999999644 34578889999999999999999999888888877766653
Q ss_pred -HHHHHHHHHHHhhhcCCCCH----HHHHHHHHHHH-------------HhhcCcchHHHHHHHHHHHHHHHHHhcCCHH
Q psy292 97 -QAVVKMIQECVTYVDKTPSK----EIKVKLIETLR-------------TVTEGKIYVEVERARLTHILAKMKEDEGDVT 158 (452)
Q Consensus 97 -~av~~~v~~~~~~~~~~~~~----~~~~~l~~~L~-------------~~~e~ki~lE~er~~l~~~La~i~e~~gd~~ 158 (452)
..=+-.++.+.. +..+++. ..-..-+..+. .++.+-+++-..-+......+++|.+.|.+.
T Consensus 106 n~dY~~YlkgLs~-~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 106 NADYAYYLKGLSY-FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ChhHHHHHHHHHH-hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 322333443332 2233321 11111122111 2233334565667778889999999999999
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHH
Q psy292 159 EAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISK 205 (452)
Q Consensus 159 eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~ 205 (452)
.|+.-.+++. |++..-+.....=.+++. .|...|-...|+.+.+
T Consensus 185 AA~nR~~~v~-e~y~~t~~~~eaL~~l~e--aY~~lgl~~~a~~~~~ 228 (254)
T COG4105 185 AAINRFEEVL-ENYPDTSAVREALARLEE--AYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHH-hccccccchHHHHHHHHH--HHHHhCChHHHHHHHH
Confidence 9999999987 556332222333233333 3555555555555444
No 41
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.74 E-value=4.3 Score=39.20 Aligned_cols=178 Identities=11% Similarity=0.075 Sum_probs=111.7
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH-HHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK-QAVVKM 102 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k-~av~~~ 102 (452)
....++....++|++++|++.+..+...- .+..+...+...++..+++.++++.-...+..+.+.+..-+ ..-+..
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45688999999999999999999987644 34577778899999999999999999998888876544442 111111
Q ss_pred HHHH---------HhhhcCCC----CHHHHHHHHH---HHHHhhcCcchHHH----------HHHHHHHHHHHHHHhcCC
Q psy292 103 IQEC---------VTYVDKTP----SKEIKVKLIE---TLRTVTEGKIYVEV----------ERARLTHILAKMKEDEGD 156 (452)
Q Consensus 103 v~~~---------~~~~~~~~----~~~~~~~l~~---~L~~~~e~ki~lE~----------er~~l~~~La~i~e~~gd 156 (452)
.... +.....++ |...-.+.++ .+-..=++.-|... .-++-....|++|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1111 11111121 2222222222 33222223333322 223334567899999999
Q ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHh
Q psy292 157 VTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 157 ~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~ 207 (452)
|..|+.-++.+.. .|...+. --+.+....+-|...|....|..+.+..
T Consensus 191 y~AA~~r~~~v~~-~Yp~t~~--~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 191 YVAVVNRVEQMLR-DYPDTQA--TRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHHHH-HCCCCch--HHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999998874 4643333 3344555556677888888887765543
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.58 E-value=7.2 Score=46.27 Aligned_cols=205 Identities=14% Similarity=0.123 Sum_probs=119.0
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHH---HHHH--
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQA---VVKM-- 102 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~a---v~~~-- 102 (452)
.+..+...|++++|++.+...-+.. .+.. .+...++.+|+..|+++.....+..+.+....-..+ .+-.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~---~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALD---PGSV---WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3445567889999999888743321 2333 356888999999999999988877766432211111 0100
Q ss_pred ----HHHHHhhhcCCCCHH---HHHHH---------HHHHHH-hhcCcc-----hHHH--HHHHHHHHHHHHHHhcCCHH
Q psy292 103 ----IQECVTYVDKTPSKE---IKVKL---------IETLRT-VTEGKI-----YVEV--ERARLTHILAKMKEDEGDVT 158 (452)
Q Consensus 103 ----v~~~~~~~~~~~~~~---~~~~l---------~~~L~~-~~e~ki-----~lE~--er~~l~~~La~i~e~~gd~~ 158 (452)
...++.++..++..+ ....+ +..-.. ...|+. .++. ....+...||.++.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 223344444433210 00000 000000 001110 0000 01123466888999999999
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhh
Q psy292 159 EAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEG 238 (452)
Q Consensus 159 eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~ 238 (452)
+|...++.+..- . + .-.+.++..++++...+++..|...++++...- +++ ... ....+..+...+
T Consensus 621 ~A~~~y~~al~~--~--P--~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~---p~~--~~~----~~~la~~~~~~g 685 (1157)
T PRK11447 621 AARAAYQRVLTR--E--P--GNADARLGLIEVDIAQGDLAAARAQLAKLPATA---NDS--LNT----QRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHHh--C--C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CCC--hHH----HHHHHHHHHhCC
Confidence 999888876632 1 1 124667778888999999999988888665432 222 222 223477777889
Q ss_pred hHHHHHHHHHHHHcC
Q psy292 239 SYLATCKHYRAILTT 253 (452)
Q Consensus 239 df~ea~~~y~e~~~t 253 (452)
++-+|...|..+...
T Consensus 686 ~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988764
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.56 E-value=3.5 Score=37.38 Aligned_cols=173 Identities=10% Similarity=0.041 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchH
Q psy292 57 DMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYV 136 (452)
Q Consensus 57 d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~l 136 (452)
+......+...++..++..|+++...+.+.......... ..+.. ....-+. ...+.+.-.+.++......++.
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~-~la~~~~-~~~~~~~A~~~~~~al~~~~~~--- 98 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD--YLAYL-ALALYYQ-QLGELEKAEDSFRRALTLNPNN--- 98 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc--HHHHH-HHHHHHH-HcCCHHHHHHHHHHHHhhCCCC---
Confidence 334445677778888888888888777666554321110 00000 0111111 1122233333333221122211
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCC
Q psy292 137 EVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK 216 (452)
Q Consensus 137 E~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~ 216 (452)
......++.++...|++++|.+.++..... . ........+.....++...+++..|.....++.... ++
T Consensus 99 ----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 167 (234)
T TIGR02521 99 ----GDVLNNYGTFLCQQGKYEQAMQQFEQAIED--P--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---PQ 167 (234)
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--c--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC
Confidence 124456788999999999999999886521 1 111223445556788899999999999988877653 22
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 217 DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 217 ~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. .+ .+...+.++...++|-+|...|.++...
T Consensus 168 ~--~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 168 R--PE----SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred C--hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 22 1334578888899999999888888665
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.54 E-value=1.9 Score=41.15 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCC
Q psy292 138 VERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 217 (452)
Q Consensus 138 ~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~ 217 (452)
.+.+..++.|+-=|.+.||+..|..-|++... . +..=-..++--+-+|-..|+.+.|...++|+...-.+. |
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~-~-----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~-G- 103 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE-H-----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN-G- 103 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-c-
Confidence 35778889999999999999999998887542 1 11222345555667888899999999999998765332 2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCC-CChhhhHhHHhhhhhhc
Q psy292 218 DVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAP-YDNEQSDLTHRVLEDKL 295 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~-~~~~~~~ll~~~~~~~~ 295 (452)
+.-+.| |-|+...+.|-+|...|..+++.|...+ .-..+.++.+|++=++ ++.-+..+-..+..||.
T Consensus 104 ---dVLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~----~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 104 ---DVLNNY----GAFLCAQGRPEEAMQQFERALADPAYGE----PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred ---chhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCC----cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 455555 8899999999999999999999998743 2346899999999776 44444444455555654
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=6.1 Score=39.69 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=124.0
Q ss_pred cCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhc-C
Q psy292 35 EGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQAVVKMIQECVTYVD-K 112 (452)
Q Consensus 35 ~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~av~~~v~~~~~~~~-~ 112 (452)
+++++.|++.++++-+ ...+++.+-..+..+++..|..|.....=+.|..+-+.. -++.-.+-+-.-||+. .
T Consensus 48 s~Q~dKAvdlF~e~l~------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hcCcchHHHHHHHHHh------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 4568999999999765 335689999999999999999998877555554332221 1111112222222221 1
Q ss_pred CCCHHHHHHHHHHHHHhhcCcchHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Q psy292 113 TPSKEIKVKLIETLRTVTEGKIYVEVE-RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME-KKEKVTLILEQMRL 190 (452)
Q Consensus 113 ~~~~~~~~~l~~~L~~~~e~ki~lE~e-r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~-~~~k~e~~Le~~rl 190 (452)
.-|. -..++..| .+ |-| +-.....|..||....+|++|.++-..+.+ .+.-+ ..+-..|+-|-+.-
T Consensus 122 l~DR--AE~~f~~L---~d-----e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k--~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 122 LLDR--AEDIFNQL---VD-----EGEFAEGALQQLLNIYQATREWEKAIDVAERLVK--LGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred hhhH--HHHHHHHH---hc-----chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--cCCccchhHHHHHHHHHHHH
Confidence 1111 11111111 11 112 224557889999999999999998887764 23222 23777888888999
Q ss_pred HhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 191 CLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 191 ~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
++...|..+|.....|+..---.+. +. -..+|+++...++|-.|-+.|..+.+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cv-------RA--si~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCV-------RA--SIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccce-------eh--hhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 9999999999999998865431211 11 234588999999999999998888653
No 46
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.35 E-value=1.1 Score=36.79 Aligned_cols=103 Identities=12% Similarity=-0.024 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
...++..+...|++++|.+.+..+... .. +.....+..+...++++..+++..|....+++.... +++ + ..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~--~-~~ 75 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK-YP--KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKS--P-KA 75 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-CC--CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCC--C-cc
Confidence 456788999999999999999987632 11 112234567778999999999999999999887654 221 0 01
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
.......+..+...+++-+|.+.|.++...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 12234457788889999999999999987754
No 47
>KOG2003|consensus
Probab=94.19 E-value=8.1 Score=40.38 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=124.6
Q ss_pred cCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCC
Q psy292 35 EGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTP 114 (452)
Q Consensus 35 ~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~ 114 (452)
+|+++.|.+-+.+--. +| .|...+|..|.-.+-..|+.+..++.+ .|.|+-+.-.+.-+|+ +-.....+.
T Consensus 503 ngd~dka~~~ykeal~-----nd-asc~ealfniglt~e~~~~ldeald~f---~klh~il~nn~evl~q-ianiye~le 572 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALN-----ND-ASCTEALFNIGLTAEALGNLDEALDCF---LKLHAILLNNAEVLVQ-IANIYELLE 572 (840)
T ss_pred cCcHHHHHHHHHHHHc-----Cc-hHHHHHHHHhcccHHHhcCHHHHHHHH---HHHHHHHHhhHHHHHH-HHHHHHHhh
Confidence 5777888887766332 33 567889999999999999999887654 3444444322222333 222222334
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q psy292 115 SKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAK 194 (452)
Q Consensus 115 ~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~ 194 (452)
|...-++++-....+.+.- -.+--+|+.+|-++||...|.+..- |+|+-.+-. +|.+-=....|+..
T Consensus 573 d~aqaie~~~q~~slip~d-------p~ilskl~dlydqegdksqafq~~y----dsyryfp~n--ie~iewl~ayyidt 639 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPND-------PAILSKLADLYDQEGDKSQAFQCHY----DSYRYFPCN--IETIEWLAAYYIDT 639 (840)
T ss_pred CHHHHHHHHHHhcccCCCC-------HHHHHHHHHHhhcccchhhhhhhhh----hcccccCcc--hHHHHHHHHHHHhh
Confidence 5555555554333343332 2344789999999999999987654 455443332 22222234557777
Q ss_pred cChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q psy292 195 KDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVL 272 (452)
Q Consensus 195 ~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl 272 (452)
.=|.++-.+..|++-.. ++ +.++..+.+--+...++|..|+..|..+--.|. +-+.||+.+|-
T Consensus 640 qf~ekai~y~ekaaliq---p~------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp------edldclkflvr 702 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQ---PN------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP------EDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHHHHHhcC---cc------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc------cchHHHHHHHH
Confidence 77888888988887554 22 122222234456668999999999999976663 34668887763
No 48
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.13 E-value=0.11 Score=39.82 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCC
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA 404 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~ 404 (452)
|+.+.+--.++|+..||..|++|++.+|..|..+|..|+|.-.-+...
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 445555688999999999999999999999999999999986555444
No 49
>KOG1840|consensus
Probab=94.02 E-value=10 Score=40.68 Aligned_cols=218 Identities=16% Similarity=0.192 Sum_probs=129.2
Q ss_pred HHHHHhcCCcHHHHHHHHH-Hh-hhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH----HHHHHHH
Q psy292 29 AIKMAAEGKFHDAIDSLLA-LE-KQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL----KQAVVKM 102 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~-le-k~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~----k~av~~~ 102 (452)
+....+.+++.+|+..+.. +- .....+++.+..--++..|..+|++.|+++..-.++..-..-+-++ -.-|+..
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 3344556788899887766 21 1222378888888899999999999999999988776555432221 1223333
Q ss_pred HHHHHhhhcCCCCHHHHHHHHH-HHHHhh--cCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchH-
Q psy292 103 IQECVTYVDKTPSKEIKVKLIE-TLRTVT--EGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKK- 178 (452)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~l~~-~L~~~~--e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~- 178 (452)
...+..........+.-..+++ .+.-.. .|. .+...+.+.-.||.+|...|.+.+|.+++....- -......+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~--~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~-~~~~~~~~~ 404 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE--DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ-ILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHhcccCc
Confidence 3333333322333355555555 332222 111 1234678889999999999999999999887642 11111111
Q ss_pred --HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 179 --EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 179 --~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
.=.-.+-.....|.+.+.+..|......+.... ..+|.+.++.---|..+ +..|...++|-+|..+-.-+.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL-~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNL-AALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHH-HHHHHHcccHHHHHHHHHHHH
Confidence 222233344555777788888887777776554 44443224554444442 445567777777666555443
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.61 E-value=9.1 Score=41.97 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
...||.++...|++++|...+...... +.. -.+.+.....++...|++..|.....++...--...+. +...
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~-~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~--~~~~ 507 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN-FPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM--YMNV 507 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc--cccH
Confidence 346788888888888888888775421 211 12455556777788888888888888876543111110 0001
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
..+....+.++...++|-+|...|..++.
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11112122333445778888887777654
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.45 E-value=0.46 Score=46.41 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.+.-|+.+...|++++|++.|.. +.+... +.| ......++.++...++++...+.+..|.... .+.....
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~-~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~ 81 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAP-PDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc-ccc----ccccccccccccccccccccccccccccccc----ccccccc
Confidence 34557778889999999998854 444211 111 2455678889999999999998887776421 1111222
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
..++.++ ...+.+.-.++.+..+.....-. .-...+.++...|+++++.+++..+.- .... ..-..+
T Consensus 82 ~~l~~l~-~~~~~~~A~~~~~~~~~~~~~~~--------~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~--~~~~~~ 148 (280)
T PF13429_consen 82 ERLIQLL-QDGDPEEALKLAEKAYERDGDPR--------YLLSALQLYYRLGDYDEAEELLEKLEE--LPAA--PDSARF 148 (280)
T ss_dssp ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH---T-----T-HHH
T ss_pred ccccccc-ccccccccccccccccccccccc--------hhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCC--CCCHHH
Confidence 2233331 11111222222222222121111 123456788899999999999998762 1222 234567
Q ss_pred HHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHH
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLA---TCKHYRAI 250 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~e---a~~~y~e~ 250 (452)
++...+++...|++.+|...++++.... |++ ++....+ +..+...+++-+ +.+.|...
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~---P~~--~~~~~~l----~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD---PDD--PDARNAL----AWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----TT---HHHHHHH----HHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC--HHHHHHH----HHHHHHCCChHHHHHHHHHHHHH
Confidence 8888999999999999999999998775 444 5554433 445555666665 55555555
No 52
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.34 E-value=9.3 Score=41.87 Aligned_cols=188 Identities=7% Similarity=0.012 Sum_probs=114.6
Q ss_pred CcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCC
Q psy292 37 KFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPS 115 (452)
Q Consensus 37 ~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~ 115 (452)
.+++|++.+.. ++.. ........+...++.+++..|+++.....+..........-. ..+....-+. ...+
T Consensus 309 ~y~~A~~~~~~al~~~----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---~~~~la~~~~-~~g~ 380 (615)
T TIGR00990 309 SYEEAARAFEKALDLG----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---SYIKRASMNL-ELGD 380 (615)
T ss_pred hHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHH-HCCC
Confidence 46667666555 3221 112223346788888999999999998877766542211110 1111111111 1122
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc
Q psy292 116 KEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK 195 (452)
Q Consensus 116 ~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~ 195 (452)
.+.-+..++......+. ...+-..++.++...|++++|...++....- . + .-...++....++...|
T Consensus 381 ~~eA~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~---P--~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSE-------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-D---P--DFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---c--cCHHHHHHHHHHHHHCC
Confidence 23333333322222222 2234466789999999999999999876521 1 1 12345666778889999
Q ss_pred ChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 196 DYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 196 d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
++..|...++++.... +.. ++. +.+.|..+...++|-+|-..|..++...
T Consensus 448 ~~~eA~~~~~~al~~~---P~~--~~~----~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 448 SIASSMATFRRCKKNF---PEA--PDV----YNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred CHHHHHHHHHHHHHhC---CCC--hHH----HHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9999999999887654 332 332 3345888889999999999999987653
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.06 E-value=7.6 Score=43.93 Aligned_cols=203 Identities=8% Similarity=-0.010 Sum_probs=123.9
Q ss_pred HHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhh
Q psy292 32 MAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQAVVKMIQECVTYV 110 (452)
Q Consensus 32 ~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~av~~~v~~~~~~~ 110 (452)
+...|++++|+..+..+.+..- +.+.. +...+..+|...|+++.....+..+...-... ..+......-+..++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~---~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQ---IIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCC---CCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 4555667788887777554311 11111 22225778999999999988877765321100 000111111111111
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCcchH--------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHH
Q psy292 111 DKTPSKEIKVKLIETLRTVTEGKIYV--------EVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVT 182 (452)
Q Consensus 111 ~~~~~~~~~~~l~~~L~~~~e~ki~l--------E~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e 182 (452)
+....+.-...++.+....+...++ +..+......+|.++...|++++|.+.++++... .+.. .+
T Consensus 322 -~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----~P~n--~~ 394 (765)
T PRK10049 322 -ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN----APGN--QG 394 (765)
T ss_pred -hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH
Confidence 1122233334444443332221111 1234456677899999999999999999987532 1222 46
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 183 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 183 ~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
+++..+.++...+++.+|...++++.... |++ .+ + +...+..+...++|-+|-..+.++.....
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~--~~--l--~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLE---PRN--IN--L--EVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC--hH--H--HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999888764 443 23 3 33457788889999999999999987654
No 54
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.00 E-value=23 Score=41.63 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..|...+.+.|++++|.+++.++..+..+-.++ ...+-..+..|...|++.+|..+.++....-+. ++ .
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD---~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~-p~-------~ 614 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPD---HITVGALMKACANAGQVDRAKEVYQMIHEYNIK-GT-------P 614 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CC-------h
Confidence 445566677777777777777765432111111 223444556677777777777666655443211 11 1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
..|..++..+...+++-+|.+.|.+...
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1234445555556666666666666643
No 55
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.61 E-value=26 Score=41.22 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=29.3
Q ss_pred HHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292 30 IKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT 89 (452)
Q Consensus 30 ~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~ 89 (452)
....+.|++++|.+.+-.+.+.--. .| ......++..|++.|+++...+.+..+.
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~-Pd----vvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVE-AN----VHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3345566666666666665432111 11 1234555666666666666665555543
No 56
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.30 E-value=30 Score=41.15 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-------------Cc-----------------chH---HHHHHHHH--
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYG-------------SM-----------------EKK---EKVTLILE-- 186 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~-------------~~-----------------~~~---~k~e~~Le-- 186 (452)
.+...||.++...|++++|...++.+...... .+ +.. .+....|.
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35678899999999999999999987432100 00 000 01111111
Q ss_pred -------------HHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 187 -------------QMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 187 -------------~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
....++..+++..|....+++.... +++ .+. +..++..+...++|-+|-.+|..++..
T Consensus 262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~--~~a----~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKD--SEA----LGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1344667788888888888877653 333 333 234588888999999999999999865
Q ss_pred CC
Q psy292 254 PC 255 (452)
Q Consensus 254 ~~ 255 (452)
..
T Consensus 333 ~p 334 (1157)
T PRK11447 333 DP 334 (1157)
T ss_pred CC
Confidence 43
No 57
>KOG1586|consensus
Probab=92.12 E-value=12 Score=36.11 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
.+.|.++.+.|+.+.|+...-+.-. +|+..++.+-++-+-.-+.+|...|.+.+|..+---+...+-.+..+ -+--+
T Consensus 58 lkaA~~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d--~ekaI 134 (288)
T KOG1586|consen 58 LKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQD--FEKAI 134 (288)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHH--HHHHH
Confidence 4568888888888888888876553 57777777777777777888888888777765544444333111111 22233
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
.+|..-+.|+..+..--.|-+||..+
T Consensus 135 ~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 135 AHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 44455555544444444444444443
No 58
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=92.06 E-value=0.34 Score=44.90 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHH--HHHHHHHH
Q psy292 358 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLN--ELMKLVNN 435 (452)
Q Consensus 358 ~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~--~ll~~v~k 435 (452)
.-+++-=+.|.|+.||..||++++++-.-|-.+..+|+|.|.||--...|...... -+.+..|...-+ ++..++..
T Consensus 105 i~yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~eE--~~~va~fi~~rGRvsi~el~~~ 182 (188)
T PF09756_consen 105 INYIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEEE--MEAVAKFIKQRGRVSISELAQE 182 (188)
T ss_dssp HHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE-----------------------------
T ss_pred HHHHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHHH--HHHHHHHHHHcCCccHHHHHHH
Confidence 34556678899999999999999999999999999999999999965566554331 123333332221 34444555
Q ss_pred HHhhH
Q psy292 436 TTHLI 440 (452)
Q Consensus 436 ~~~lI 440 (452)
++.+|
T Consensus 183 ~N~~i 187 (188)
T PF09756_consen 183 SNRLI 187 (188)
T ss_dssp -----
T ss_pred HHhhc
Confidence 55555
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.78 E-value=9.6 Score=34.39 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=114.9
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.....+......|++++|++.+....+.. +. ...+...++.+++..|+++...+.+............+ .
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~ 102 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD--PD----DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV----L 102 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----H
Confidence 34455666778899999999888754321 11 23567788999999999999888776555322111111 1
Q ss_pred HHHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVT 182 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e 182 (452)
...........+.+.-.+.++ .+.... + .........++.++...|++++|...+.....- .. . -.+
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~--~~~ 170 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPL----Y--PQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DP---Q--RPE 170 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccc----c--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc---C--ChH
Confidence 111111111122222233333 222100 0 112334566799999999999999999876532 11 1 134
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy292 183 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249 (452)
Q Consensus 183 ~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e 249 (452)
.++...+++...+++.+|.....++.... ++. .+.. ...+.++...+++-+|...+..
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~~~----~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQTY---NQT--AESL----WLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HHHH----HHHHHHHHHHhhHHHHHHHHHH
Confidence 56677889999999999999988887652 222 2221 2346666677777766554433
No 60
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=91.77 E-value=0.22 Score=41.27 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=34.4
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
=|+++.|++.|++|.++|+..|-.|+.+|.||..||-
T Consensus 65 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 65 GVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred cccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 4999999999999999999999999999999999984
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.69 E-value=11 Score=42.92 Aligned_cols=99 Identities=9% Similarity=-0.045 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.....+|.++...|++.+|.++++.+... . +.. .+.++..+.++...+....|...++++.+.. + +
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~-d---P~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p-----~ 168 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKK-D---PTN--PDLISGMIMTQADAGRGGVVLKQATELAERD---P-----T 168 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C---CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---c-----c
Confidence 35566789999999999999999998632 1 111 3455566888899999999999988887664 2 1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
+.++...+.++....++.+|...|.++++..+.
T Consensus 169 --~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 169 --VQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred --hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 222343455555577777899999999887643
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.51 E-value=23 Score=38.21 Aligned_cols=212 Identities=14% Similarity=0.114 Sum_probs=115.7
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
.+-.+.-+..+|++++|++-|..-++.- -| ...++..-++++.+.|+++.....+..|.++=-. ...--..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I---~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~ 79 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQI---LD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLE 79 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhC---CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHH
Confidence 4556677788899999999986655432 34 3346788899999999999998877777742100 000001111
Q ss_pred HHHhhhcCCC--CHHHHHHHHHHHHH--------------hhcCcchHHHHHHHHH-----------HHHHHHHHhcCCH
Q psy292 105 ECVTYVDKTP--SKEIKVKLIETLRT--------------VTEGKIYVEVERARLT-----------HILAKMKEDEGDV 157 (452)
Q Consensus 105 ~~~~~~~~~~--~~~~~~~l~~~L~~--------------~~e~ki~lE~er~~l~-----------~~La~i~e~~gd~ 157 (452)
.++..-...+ +.+.+..+++.+.. ..+|--|-+.-...++ ..|-.+|....+.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH
Confidence 1111000111 12333444443321 1111111111111111 1223344433332
Q ss_pred HHHHHHHHHHHHHh--ccCcc---------hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHH
Q psy292 158 TEAANIIQELQVET--YGSME---------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY 226 (452)
Q Consensus 158 ~eA~~iL~~l~~Et--~~~~~---------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~ 226 (452)
.-..+++.++.-.. .++.+ +.-.+=.+.-.++.|-..|++.+|-.+++++.... |. -+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---Pt------~~el 230 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---PT------LVEL 230 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CC------cHHH
Confidence 22223333322110 11111 12334455667888889999999999999886654 33 3456
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 227 YRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 227 ~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
|...|+++.|.++|.+|+..+.++-.
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88899999999999999999998843
No 63
>KOG1941|consensus
Probab=91.45 E-value=16 Score=37.45 Aligned_cols=236 Identities=13% Similarity=0.147 Sum_probs=127.3
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhhhHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEH-ITMLTKRRSQLKQAVVK 101 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~-~~~l~~~~~q~k~av~~ 101 (452)
.+++.+-+++.+.+.+.|+..--. |++. +|...-|+.+--+++...+.|.|++|+.. +..+...+.+- .
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l----~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~-----d 78 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKL----SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE-----D 78 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHH----HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 456777788888888999887666 6763 56677788899999999999999998654 33333322221 1
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHH--H-------hhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIETLR--T-------VTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY 172 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~~L~--~-------~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~ 172 (452)
--..+..|+.-..+.+...++-+|+. + ...|..=+ .....++.-+...+.+.+|++-++....=..
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g-----q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG-----QVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc-----hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 11222222211111222222333331 0 11111100 1223355556666666666666554321100
Q ss_pred cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhcc---------------------------------------
Q psy292 173 GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD--------------------------------------- 213 (452)
Q Consensus 173 ~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~--------------------------------------- 213 (452)
..-|.-.-+.++.----++-..+|+.+|.++..|+...+-.
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 11111223333333444555556666666666665433210
Q ss_pred ----CCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Q psy292 214 ----DEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLM 275 (452)
Q Consensus 214 ----~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~I 275 (452)
.-|+ ..+..+--.+++.+|...+|.-.||..|..++-+-....|--.-+.+|..+.-|..
T Consensus 234 klal~~Gd--ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 234 KLALQHGD--RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred HHHHHhCC--hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 0122 44444555678888888999999999999998887655443333445555555544
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.23 E-value=4.8 Score=29.87 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..+|..+...|++++|...+...... ... .. ..+.....++...+++..|.....++.... +.. .
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~---~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~---- 68 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL-DPD---NA--DAYYNLAAAYYKLGKYEEALEDYEKALELD---PDN--A---- 68 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc-CCc---cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccc--h----
Confidence 45788899999999999999876532 111 11 567778888888899999998888776543 222 2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
..+...+..+...+++..|...|..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 2234457777788888888888877754
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=91.14 E-value=31 Score=39.03 Aligned_cols=201 Identities=10% Similarity=0.010 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhhh-hccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHH
Q psy292 39 HDAIDSLLALEKQ-TRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKE 117 (452)
Q Consensus 39 ~~a~~~l~~lek~-~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~ 117 (452)
++|++.+..+.+. ...+.+.....++....+-.+...|+++.....+..+.+.......-....+-. -++ ...+.+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~--~yl-~~g~~e 289 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVAS--AYL-KLHQPE 289 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHH--HHH-hcCCcH
Confidence 4566655555443 222333332333333323344567888888877777664321111100011111 122 122223
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---------cCcchHHHHHHHHHHH
Q psy292 118 IKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY---------GSMEKKEKVTLILEQM 188 (452)
Q Consensus 118 ~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~---------~~~~~~~k~e~~Le~~ 188 (452)
.-+..++.+-...+... + ........|+..+.+.|++++|...++.+....- ...+.....+.++..+
T Consensus 290 ~A~~~l~~~l~~~p~~~--~-~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 290 KAQSILTELFYHPETIA--D-LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred HHHHHHHHHhhcCCCCC--C-CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 33333332221111110 0 0112345667778999999999999998764311 1122335677888888
Q ss_pred HHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 189 RLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 189 rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.++...+++..|...+.++.... |++ .++ ....+..+...+++-+|-..|..++...
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~---P~n--~~l----~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNA---PGN--QGL----RIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCC--HHH----HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999887664 444 443 3344888899999999999999998765
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.94 E-value=3.2 Score=37.43 Aligned_cols=69 Identities=7% Similarity=-0.029 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.+.....++..+...|++++|...++...... . +.......+.....++...|++..|...+.++....
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-E--DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-h--ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55566888999999999999999998765321 1 112345677888899999999999999998887653
No 67
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.67 E-value=2 Score=32.91 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEK--KEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~--~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
.+.+-..+|.+|...|++++|.+.++...- ....+++ ...+..+.....++...||+..|..+..++...
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALD-IEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-HHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355667899999999999999999987652 2333433 256888888999999999999999999988653
No 68
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=90.19 E-value=3.3 Score=42.97 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=84.8
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHH
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKV 181 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~ 181 (452)
+|..++.++...+.-+.-+.+++.|...... ....||+++...++-.+|.+++++...+ ...+ .
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe----------v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d----~ 234 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE----------VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQD----S 234 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc----------HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCC----H
Confidence 5677777776555445556666666543322 2244799998899999999999987744 2222 7
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKH 246 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~ 246 (452)
+.+..|++.++..+++..|..+++++......+ .+.- .+.+..|...++|-+|-..
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~-------f~~W--~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELSPSE-------FETW--YQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh-------HHHH--HHHHHHHHhcCCHHHHHHH
Confidence 889999999999999999999999887765222 2222 3348888888888887643
No 69
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=90.11 E-value=6.5 Score=32.00 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=70.1
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
..+..+..+.+.|++++|++.+..+.... .+......+...++.++++.|+++...+.+..+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------- 69 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY----------- 69 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----------
Confidence 45667788888899999999998865432 2323344577889999999999998877776655321
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
|+ ..+ .......++.++...|++.+|...+..+..
T Consensus 70 ----------p~-----------------~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 70 ----------PK-----------------SPK----APDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred ----------CC-----------------CCc----ccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 11 000 012345667888889999999999988753
No 70
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.07 E-value=2.7 Score=32.25 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
...+.....++...++|.+|..+.+++... ....|++ .......+..+|..+...++|-+|-.+|.++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677788999999999999999999887 4444431 223466677789999999999999999998853
No 71
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=89.76 E-value=3.6 Score=43.72 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCC
Q psy292 138 VERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 217 (452)
Q Consensus 138 ~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~ 217 (452)
++.....+.=+..+.++|+...|..++..|++ .+.+..|.+..|...+|.+..+++..|.....+..+--+.
T Consensus 60 ~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~----~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls---- 131 (604)
T COG3107 60 EQQNDWLLLAARALVEEGKTAQAQALLNQLPQ----ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLS---- 131 (604)
T ss_pred hhhhhHHHHHHHHHHHcCChHHHHHHHHhccc----cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcC----
Confidence 45666666668889999999999999999884 6788999999999999999999999999999888765432
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 218 DVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
+--+.|||...+....++++-++|.+-.-..
T Consensus 132 --~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~ 162 (604)
T COG3107 132 --QNQQARYYQARADALEARGDSIDAARARIAQ 162 (604)
T ss_pred --HHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3348999999999999999999988876655
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=89.44 E-value=12 Score=31.59 Aligned_cols=98 Identities=15% Similarity=0.003 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
....++..+...|++.+|...++.+.- . .. .-.+.+.....+++..+++..|...++++.... +.+ ++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~--~~~ 87 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAA-Y-DP----YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDD--PRP 87 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHH-h-CC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCC--hHH
Confidence 456778999999999999999987642 1 11 123666777888889999999999888776543 222 222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
.| ..+..+...++|..|.+.|..++....
T Consensus 88 --~~--~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 88 --YF--HAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred --HH--HHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 23 347888889999999999999877643
No 73
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.25 E-value=47 Score=38.25 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=84.7
Q ss_pred HHHHHHHhhhhccC--CchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH-HHH--------------
Q psy292 42 IDSLLALEKQTRTG--SDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK-MIQ-------------- 104 (452)
Q Consensus 42 ~~~l~~lek~~r~~--~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~-~v~-------------- 104 (452)
+..++.=|+=+|.. +=.++.+.+..+++..+...|+++...+.+..... ..+..+.- +..
T Consensus 9 ~~~~~~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~ 85 (906)
T PRK14720 9 LTSLLNEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSN 85 (906)
T ss_pred HHHHhhhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhh
Confidence 44455557766652 22455677889999999888999888776553332 11111111 111
Q ss_pred --HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHH
Q psy292 105 --ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVT 182 (452)
Q Consensus 105 --~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e 182 (452)
.+++.++.-++...-.-++.++-..-+++ + .-..||..|...|++++|..+++.+..-.......-..+.
T Consensus 86 lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k------~--Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~A 157 (906)
T PRK14720 86 LLNLIDSFSQNLKWAIVEHICDKILLYGENK------L--ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLA 157 (906)
T ss_pred hhhhhhhcccccchhHHHHHHHHHHhhhhhh------H--HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 22222211111112222222332222221 2 4467899999999999999999987642222221123444
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHhhhhhc
Q psy292 183 LILEQMRLCLAKKDYIRTQIISKKINTKFF 212 (452)
Q Consensus 183 ~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~ 212 (452)
+.+... |..+|..++.||-..++
T Consensus 158 Y~~ae~-------dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 158 TSYEEE-------DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHh-------hHHHHHHHHHHHHHHHH
Confidence 444333 89999999999976654
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.11 E-value=21 Score=39.75 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
.-+...|.+.|++++|.+++++.+.+ +. ...+-..+..|-..+++..|....++....- ++ ..
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~------p~--~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~---p~------~~ 528 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFK------PT--VNMWAALLTACRIHKNLELGRLAAEKLYGMG---PE------KL 528 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCC------CC--HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC---CC------CC
Confidence 34678899999999999998765432 11 2346666777888999999988877664322 21 12
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..|..++..|...+++-+|.+.+.+.-+.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 23677888999999999999999888544
No 75
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.29 E-value=1.8 Score=31.95 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
.+|..+...|++++|.+.++.+... - ..-.+.++...+++...|++..|.....++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----D--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----S--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987632 1 236788889999999999999999998887654
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=87.52 E-value=31 Score=34.27 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=132.7
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQE 105 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~ 105 (452)
+=.++...=.|++..++.... +... ++ ..-......+.+-+...|+++.....+..-. ..-.+-|+.
T Consensus 5 Lf~vrn~fy~G~Y~~~i~e~~-~~~~----~~-~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-------~~~l~av~~ 71 (290)
T PF04733_consen 5 LFTVRNQFYLGNYQQCINEAS-LKSF----SP-ENKLERDFYQYRSYIALGQYDSVLSEIKKSS-------SPELQAVRL 71 (290)
T ss_dssp THHHHHHHCTT-HHHHCHHHH-CHTS----TC-HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-------SCCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhh-ccCC----Cc-hhHHHHHHHHHHHHHHcCChhHHHHHhccCC-------ChhHHHHHH
Confidence 345677777888898886554 2221 11 2123345566677777788775533332111 011134566
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 106 CVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
+..|+.. |+ .+...+..|...-.+..--..+ -+....|.++..+|++++|.+++... .-+|.+.
T Consensus 72 la~y~~~-~~--~~e~~l~~l~~~~~~~~~~~~~--~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~a 135 (290)
T PF04733_consen 72 LAEYLSS-PS--DKESALEELKELLADQAGESNE--IVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLA 135 (290)
T ss_dssp HHHHHCT-ST--THHCHHHHHHHCCCTS---CHH--HHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHH
T ss_pred HHHHHhC-cc--chHHHHHHHHHHHHhccccccH--HHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHH
Confidence 6667653 22 2444555554332222111111 23455688999999999999887531 3357778
Q ss_pred HHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHH
Q psy292 186 EQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHA 265 (452)
Q Consensus 186 e~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~ 265 (452)
..+.++|..+.+..|...+++.... .+ + ..-..+-.....+.....+|.+|+..|.|+.+++.. + ..
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~--~e--D---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~--t----~~ 202 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQI--DE--D---SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS--T----PK 202 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCC--SC--C---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----S----HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CC--c---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC--C----HH
Confidence 8889999999999999888765432 22 2 333444444444445556799999999999988743 2 23
Q ss_pred HHHHHHHHHHhCCCChhhhHhH-HhhhhhhccCCchHHHHHHHH
Q psy292 266 VLQNVVLYLMLAPYDNEQSDLT-HRVLEDKLLNEIPLYKGLLQW 308 (452)
Q Consensus 266 ~Lk~~vl~~ILa~~~~~~~~ll-~~~~~~~~~~~ip~~~~L~~~ 308 (452)
.|-.+..|.|....-++=..+| ..+..+++.++ .+.++..+
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d--~LaNliv~ 244 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD--TLANLIVC 244 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH--HHHHHHHH
Confidence 4666777777776544333334 33444544322 34444443
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.12 E-value=5.3 Score=31.20 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=56.6
Q ss_pred hcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHH
Q psy292 153 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 232 (452)
Q Consensus 153 ~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~ 232 (452)
+.|++++|...++.+.-...+ ...-.+++...++++..+++.+|..++++ ... . ++ ....+| +.|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~----~~~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~-~-~~----~~~~~~--l~a~ 66 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT----NPNSAYLYNLAQCYFQQGKYEEAIELLQK--LKL-D-PS----NPDIHY--LLAR 66 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG----THHHHHHHHHHHHHHHTTHHHHHHHHHHC--HTH-H-HC----HHHHHH--HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC----ChhHHHHHHHHHHHHHCCCHHHHHHHHHH--hCC-C-CC----CHHHHH--HHHH
Confidence 368999999999987743221 12556888889999999999999998887 222 1 11 123333 3388
Q ss_pred HHHHhhhHHHHHHHHHH
Q psy292 233 LDQHEGSYLATCKHYRA 249 (452)
Q Consensus 233 ~~~~~~df~ea~~~y~e 249 (452)
.+..-++|-+|-+.|.+
T Consensus 67 ~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTT-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 88888888888887765
No 78
>KOG2376|consensus
Probab=86.85 E-value=36 Score=36.88 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---------hhhhHHH
Q psy292 27 PAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK---------RRSQLKQ 97 (452)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~---------~~~q~k~ 97 (452)
++|==.++-+++++|+..+-.+++.+ ..++.-=+++||+.++|+.-.+.+..|.+ +|..+-+
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~~~---------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDRLD---------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcccccc---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 33333444455666666655444322 13444457889999999999998888864 2222322
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcch
Q psy292 98 AVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEK 177 (452)
Q Consensus 98 av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~ 177 (452)
+++....+.+..++..|. + -..+-...|-++...|+|.+|.++|+.-..=|..++.+
T Consensus 155 ~~a~l~~~~~q~v~~v~e----------------~-------syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPE----------------D-------SYELLYNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred HHHhhhHHHHHhccCCCc----------------c-------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 233332223333333321 1 12344566888899999999999998763222222211
Q ss_pred ----HHHHHHHHHHHHH-----HhhccChHHHHHHHHHhh
Q psy292 178 ----KEKVTLILEQMRL-----CLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 178 ----~~k~e~~Le~~rl-----~l~~~d~~~a~~~~~K~~ 208 (452)
.+-.+--|-.+|+ +...|+...|..++..+.
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1333333333444 334588888876555543
No 79
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=86.69 E-value=0.2 Score=54.09 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCC
Q psy292 138 VERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 217 (452)
Q Consensus 138 ~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~ 217 (452)
.+++.+.+.-|+.+..+|++..|..+|..|.. ..++...+.++.|..+++.+..+++..|...++......+.
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~---~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~---- 93 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDP---QQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLP---- 93 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhccc---ccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCC----
Confidence 45777778889999999999999999999874 55677899999999999999999999998887764433322
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 218 DVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
.....+|+.+.+..+...++.++|++.+.....
T Consensus 94 --~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 94 --PEQQARYHQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp -----------------------------------
T ss_pred --HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 456889999999999999999999998887643
No 80
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=86.59 E-value=58 Score=36.19 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.....++.++...|++++|...++.... .. ++. ........+++...|++..|...+.++...- ++. .
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~-l~---P~~--~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~--~- 352 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLA-TH---PDL--PYVRAMYARALRQVGQYTAASDEFVQLAREK---GVT--S- 352 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-hC---CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccc--h-
Confidence 4556789999999999999999988653 11 111 2344445778889999999998888776542 322 1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.++.+.+..+...+++-+|-..|..+...
T Consensus 353 ---~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 ---KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 12333466777889999999999988766
No 81
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.09 E-value=58 Score=35.77 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=83.0
Q ss_pred HHHHhh-cCcchHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhc-cCc-chHHHHHHHHHHHHHHhhccChHHH
Q psy292 125 TLRTVT-EGKIYVEVERARLTHILAKMKE-DEGDVTEAANIIQELQVETY-GSM-EKKEKVTLILEQMRLCLAKKDYIRT 200 (452)
Q Consensus 125 ~L~~~~-e~ki~lE~er~~l~~~La~i~e-~~gd~~eA~~iL~~l~~Et~-~~~-~~~~k~e~~Le~~rl~l~~~d~~~a 200 (452)
+|..+. ..++.. .+.++++.+||.++. +..++++|-..|+.-..-+. ..+ +.+..++++| +|++...+-.. |
T Consensus 43 CL~~~~~~~~l~p-~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll--~~i~~~~~~~~-a 118 (608)
T PF10345_consen 43 CLEAVLKQFKLSP-RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL--ARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHhccCCCCH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH--HHHHHhcCHHH-H
Confidence 444444 444444 457889999999977 67899999999986433222 222 2245555555 88888777666 8
Q ss_pred HHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCH
Q psy292 201 QIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDP 260 (452)
Q Consensus 201 ~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~ 260 (452)
....++..... +..+...|-.-.+| +.+.++...+|+-.|...+..+........|+
T Consensus 119 ~~~l~~~I~~~-~~~~~~~w~~~frl--l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 119 LKNLDKAIEDS-ETYGHSAWYYAFRL--LKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHH-hccCchhHHHHHHH--HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 88888776554 32222125555555 33555544589999999999998877644443
No 82
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=86.03 E-value=62 Score=36.02 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHH
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLK 225 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~ 225 (452)
.|..-|...|+.++|.++++++... |-.++ ...+.-.+..|...|+...|..+.+......--.+ ...
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd---~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-------~~~ 463 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAE--GVAPN---HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-------RAM 463 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-------Ccc
Confidence 4566677777777777777776532 22111 12244455667778888888777776654321112 223
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
-|.+++..+...+++-+|...|.+.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC
Confidence 3677888888899999998887765
No 83
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.63 E-value=1.7 Score=30.36 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
++.||+.|.+.||.+.|.++|+++..+ ++-+-+....-+|
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~--~~~~q~~eA~~LL 41 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE--GDEAQRQEARALL 41 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 467899999999999999999998843 4433334443333
No 84
>KOG1070|consensus
Probab=84.39 E-value=65 Score=38.57 Aligned_cols=134 Identities=10% Similarity=0.152 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~ 142 (452)
+...+..+|-+..+++...+++.++.||+||-++.=....+.++.. .+.+--..+++ +|.++-. +- ...
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~----ne~~aa~~lL~rAL~~lPk-~e-----Hv~ 1601 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ----NEAEAARELLKRALKSLPK-QE-----HVE 1601 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc----cHHHHHHHHHHHHHhhcch-hh-----hHH
Confidence 4445678888899999999999999999987654333333333321 11122233333 5544332 22 334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhcc
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD 213 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~ 213 (452)
+..+-|.+-++-||-+.+-.++.++..+ .-.+.++|.--++.-+..+|...+..+..|+-.+-+.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhh------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5577789999999999999999887653 2357789999999999999999999999998776543
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=84.29 E-value=2.1 Score=31.73 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=42.6
Q ss_pred HhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 152 EDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 152 e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.+.|++++|.+.++.+... . ..-.++.+..+++++..|++..|..+..++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~-----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-N-----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-T-----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHH-C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4689999999999998643 1 1245677788999999999999999998877654
No 86
>KOG2076|consensus
Probab=84.17 E-value=82 Score=35.82 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=75.9
Q ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHH
Q psy292 126 LRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISK 205 (452)
Q Consensus 126 L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~ 205 (452)
|......+.+...++.-+-..+|+.+...|.+.+|.+++..+.-. +.-....+++.+.|++...+.+..|...+.
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~ 473 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYE 473 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 333333444445678889999999999999999999999887532 222337899999999999999999999999
Q ss_pred HhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy292 206 KINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCK 245 (452)
Q Consensus 206 K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~ 245 (452)
|+...- |++ -|-++++. .++...+++-+|..
T Consensus 474 kvl~~~---p~~--~D~Ri~La----sl~~~~g~~EkalE 504 (895)
T KOG2076|consen 474 KVLILA---PDN--LDARITLA----SLYQQLGNHEKALE 504 (895)
T ss_pred HHHhcC---CCc--hhhhhhHH----HHHHhcCCHHHHHH
Confidence 987664 443 45566553 34444555554443
No 87
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=83.54 E-value=3.5 Score=32.25 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~ 207 (452)
.-..||..+...|++++|..+++..... ... .+......+.++..+++..|...+.++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~~~~~------~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQKLKLD------PSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCHTHH------HCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 4456899999999999999999873221 111 344444599999999999998887764
No 88
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=83.23 E-value=33 Score=30.50 Aligned_cols=106 Identities=8% Similarity=-0.105 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+..-..++..+...|++++|...+.......- +.......+.....++...+++..|...+.++....-...+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~-- 108 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA-- 108 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH--
Confidence 445557779999999999999999987653211 112344577788889999999999999999887552111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
+-.....+...++.+...++|-+|-.+|.++
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 2222233443344444555555444444433
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=82.85 E-value=41 Score=31.38 Aligned_cols=183 Identities=11% Similarity=0.004 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHH
Q psy292 59 VSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEV 138 (452)
Q Consensus 59 ~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~ 138 (452)
..........+..++..|+++.....+..+.+....-............-+. ...+.+.-+..++.+....++...+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~- 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDAD- 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchH-
Confidence 4455688889999999999999988877666432111000001111111121 22333444455554433333332211
Q ss_pred HHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHhccCcchHHH------------HHHHHHHHHHHhhccChH
Q psy292 139 ERARLTHILAKMKED--------EGDVTEAANIIQELQVETYGSMEKKEK------------VTLILEQMRLCLAKKDYI 198 (452)
Q Consensus 139 er~~l~~~La~i~e~--------~gd~~eA~~iL~~l~~Et~~~~~~~~k------------~e~~Le~~rl~l~~~d~~ 198 (452)
. .-..++..+.. .|++++|.+.++.+......+. ...+ ....+....+++..|++.
T Consensus 108 -~--a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 108 -Y--AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE-YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred -H--HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 1 12233444443 4889999999988754311211 1111 112346678899999999
Q ss_pred HHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 199 RTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 199 ~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.|.....++....-..+ +..+..+ ..+..+...++|-+|..+|..+-..
T Consensus 184 ~A~~~~~~al~~~p~~~----~~~~a~~--~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 184 AAINRFETVVENYPDTP----ATEEALA--RLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHCCCCc----chHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99998888876652222 2334444 3488999999999999988777443
No 90
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=82.62 E-value=6.8 Score=28.63 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHHhhccc--eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCC
Q psy292 354 EHNIRVMAKYYTR--ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA 404 (452)
Q Consensus 354 EhNi~~isk~Ys~--Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~ 404 (452)
+..++.+...+.. ++...||+.+++++.-+-..+..|+..|-+.-.-|..+
T Consensus 7 q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D 59 (62)
T PF12802_consen 7 QFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGD 59 (62)
T ss_dssp HHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSS
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCC
Confidence 3444555555555 99999999999999999999999999999877666544
No 91
>KOG1156|consensus
Probab=82.61 E-value=82 Score=34.64 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=73.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHH
Q psy292 148 AKMKEDEGDVTEAANIIQELQVETYGSMEK--KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLK 225 (452)
Q Consensus 148 a~i~e~~gd~~eA~~iL~~l~~Et~~~~~~--~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~ 225 (452)
|--+--.|++..|..++++...-...+.+. -+..+.+|.+.++..+.+-+..|.....+..+.+.+ ++.
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---------kla 220 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD---------KLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH---------HHH
Confidence 333445699999999999865432233333 389999999999999999988888887777776643 556
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
|-...+.+..-.+.+.+|..-|.-.+...
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 66667777777888888988888887654
No 92
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=82.49 E-value=6.5 Score=34.79 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=55.6
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR 91 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~ 91 (452)
+...+|+.+.++|++.+|++.|..|+..- .-+.++..+-..|+-.+|+.++|+.-...+..+.+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ry---P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRY---PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46788999999999999999999998744 456777889999999999999999998887777753
No 93
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.48 E-value=49 Score=31.99 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=79.1
Q ss_pred HHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy292 32 MAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYV 110 (452)
Q Consensus 32 ~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~ 110 (452)
+...+++++|++.+.. .++. . ....+...+.++...++|+.+.+.+..+... ...+... ........+.
T Consensus 87 l~~~~~~~~A~~~~~~~~~~~----~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~a~~~ 156 (280)
T PF13429_consen 87 LLQDGDPEEALKLAEKAYERD----G----DPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSA-RFWLALAEIY 156 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-H-HHHHHHHHHH
T ss_pred ccccccccccccccccccccc----c----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCH-HHHHHHHHHH
Confidence 3566789999987655 3331 1 1345677888999999999999988887742 1111111 1111111111
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q psy292 111 DKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRL 190 (452)
Q Consensus 111 ~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl 190 (452)
....+.+.-++.++.--...++. ..+...|+.++.+.|++++|.++|..+.....+. + .++......
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~-------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~-----~~~~~la~~ 223 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDD-------PDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-P-----DLWDALAAA 223 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-C-----CHCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-H-----HHHHHHHHH
Confidence 12222233344444222233322 2244557888889999999888888876542111 0 244555788
Q ss_pred HhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 191 CLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 191 ~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
++..|++..|-.+++++.... +++ +...+.| +..+...+.+-+|...++.++
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~---p~d--~~~~~~~----a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLN---PDD--PLWLLAY----ADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHS---TT---HHHHHHH----HHHHT----------------
T ss_pred hcccccccccccccccccccc---ccc--ccccccc----ccccccccccccccccccccc
Confidence 889999999999999876543 444 5555544 777778888888888887764
No 94
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=81.96 E-value=5.9 Score=29.09 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=40.0
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
|..+.+--..++++.||+.||+|+.-+-+-+..|...|. |.+..|-+.+.
T Consensus 5 Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~----i~r~~GG~~~~ 54 (57)
T PF08220_consen 5 ILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGL----IKRTHGGAVLN 54 (57)
T ss_pred HHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC----EEEEcCEEEeC
Confidence 344445578999999999999999999999999999986 55666655543
No 95
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=81.65 E-value=27 Score=35.64 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHH
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLK 225 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~ 225 (452)
..|.-....|+|.+|...+...... .. .-..+++....+++..+++..|...+.++...- ++. . ..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---P~~--~--~a- 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DP----NNAELYADRAQANIKLGNFTEAVADANKAIELD---PSL--A--KA- 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCC--H--HH-
Confidence 4477888999999999999887532 11 124577888899999999999999999887653 322 2 22
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
+...|..+...++|-+|...|..+.....
T Consensus 73 -~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 73 -YLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 33458888899999999999999976543
No 96
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=81.40 E-value=12 Score=34.55 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhHhHHhhhh-hhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHh--ccCCCCCccc
Q psy292 262 QRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE-DKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEEL--FKTSVFNQST 338 (452)
Q Consensus 262 ~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~-~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L--~~~~~~~~~~ 338 (452)
.......|.++|.+.....++-...+..+-. ....+.+-.--.+..++.+++. . .|-+.+ ...+..
T Consensus 97 ~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny---~----~ff~l~~~~~~~~l---- 165 (204)
T PF03399_consen 97 NEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFALELCRALMEGNY---V----RFFRLYRSKSAPYL---- 165 (204)
T ss_dssp THHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTH---H----HHHHHHT-TTS-HH----
T ss_pred CHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCH---H----HHHHHHhccCCChH----
Confidence 3444567777877665544444444433311 1111222233356788887753 2 333333 111111
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHhhccc-eeHHHHHHHhCC
Q psy292 339 EEGQKCF-KMLKHRVVEHNIRVMAKYYTR-ITLQRMCDLLGL 378 (452)
Q Consensus 339 ~~g~~~~-~~L~~~viEhNi~~isk~Ys~-Itl~~La~ll~l 378 (452)
..+. ..+..+++.+-+..+.+.|.+ |+++.++++||.
T Consensus 166 ---~~~l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 166 ---FACLMERFFNRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp ---HHHHHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 0121 235668899999999999999 999999999974
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=80.74 E-value=11 Score=27.55 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 27 PAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
..+..+.+.|++++|++.+..+.+.. +....+...++.+++..|+++.-...+....+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45777889999999999999977532 23567889999999999999999887766653
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=79.91 E-value=35 Score=33.39 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=70.0
Q ss_pred hhHHHHHH-HhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 25 KIPAAIKM-AAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 25 ~~~~~~~~-~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
....|..+ .+.|++++|+..|..+-+.- .+..-...+...++++++..|+++.-...+..+.++.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----------- 210 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----------- 210 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------
Confidence 45566666 56788999999998865433 2223344678999999999999998877665555421
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVE 170 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~E 170 (452)
|+.. + +.....+++.++.+.|++++|...++.+...
T Consensus 211 ----------P~s~---------------~------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 211 ----------PKSP---------------K------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ----------CCCc---------------c------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2210 0 2223355688888999999999999988643
No 99
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=79.79 E-value=5.6 Score=31.40 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=37.0
Q ss_pred HHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEe
Q psy292 358 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKI 400 (452)
Q Consensus 358 ~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akI 400 (452)
+.+.+-+-+++...||..|+.|++-||.+|..++.-|++.-.-
T Consensus 8 Rd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 8 RDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 3344448999999999999999999999999999999986443
No 100
>KOG1155|consensus
Probab=79.34 E-value=52 Score=34.78 Aligned_cols=152 Identities=20% Similarity=0.124 Sum_probs=91.4
Q ss_pred CcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCC
Q psy292 37 KFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPS 115 (452)
Q Consensus 37 ~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~ 115 (452)
+..+|++.+.- ++--+ -| .|+-..|+|.|--.++.---+-+++.-.. +|+-=.+|-..+-+-..++..
T Consensus 379 Nt~AAi~sYRrAvdi~p---~D----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~----~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINP---RD----YRAWYGLGQAYEIMKMHFYALYYFQKALE----LKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred ccHHHHHHHHHHHhcCc---hh----HHHHhhhhHHHHHhcchHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHhcc
Confidence 45677777655 33211 22 56778888888777776666666554442 222223454444444444444
Q ss_pred HHHHHHHHH-HH-HHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-Hh-ccCcch-HHHHHHHHHHHHH
Q psy292 116 KEIKVKLIE-TL-RTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQV-ET-YGSMEK-KEKVTLILEQMRL 190 (452)
Q Consensus 116 ~~~~~~l~~-~L-~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~-Et-~~~~~~-~~k~e~~Le~~rl 190 (452)
.+.-++-+. ++ -.-++|.+ -.+||++|++-++..+|+.....-.. +. .|..++ -.|.-.+| ++-
T Consensus 448 ~~eAiKCykrai~~~dte~~~---------l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL--A~~ 516 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSA---------LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL--AEY 516 (559)
T ss_pred HHHHHHHHHHHHhccccchHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH--HHH
Confidence 444444444 22 12223433 25789999999999999998876543 11 255555 35555554 455
Q ss_pred HhhccChHHHHHHHHHhhhh
Q psy292 191 CLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 191 ~l~~~d~~~a~~~~~K~~~~ 210 (452)
++..+||.+|..+..+++.-
T Consensus 517 f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhhcchHHHHHHHHHHhcC
Confidence 77889999999998877644
No 101
>KOG2076|consensus
Probab=79.33 E-value=1.2e+02 Score=34.53 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=171.6
Q ss_pred ccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhh
Q psy292 15 EVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQ 94 (452)
Q Consensus 15 ~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q 94 (452)
..-+++++...+.+|..+..-|++++|.+.+.++-|+.. ....+-..|+.+|-+.|+.++-...-..-. .
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp------~~~~ay~tL~~IyEqrGd~eK~l~~~llAA----H 201 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDP------RNPIAYYTLGEIYEQRGDIEKALNFWLLAA----H 201 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc------cchhhHHHHHHHHHHcccHHHHHHHHHHHH----h
Confidence 445667788899999999877999999999999988653 234577999999999998776643211111 1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH---HHhhcCcchH------HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy292 95 LKQAVVKMIQECVTYVDKTPSKEIKVKLIETL---RTVTEGKIYV------EVERARLTHILAKMKEDEGDVTEAANIIQ 165 (452)
Q Consensus 95 ~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L---~~~~e~ki~l------E~er~~l~~~La~i~e~~gd~~eA~~iL~ 165 (452)
+++ .|.+.+..+.+-. ..+...+.++ .-...++...-+.+|.+.|+...|++...
T Consensus 202 L~p----------------~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 202 LNP----------------KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred cCC----------------CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 100 1123333332211 0011111111 00112344556888999999999998887
Q ss_pred HHHHHhccCcchHHHHHHHHHH-HHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy292 166 ELQVETYGSMEKKEKVTLILEQ-MRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATC 244 (452)
Q Consensus 166 ~l~~Et~~~~~~~~k~e~~Le~-~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~ 244 (452)
.+.- +-.-.+.++.+-.... ++.++..++-.+|.....-+-.+-....+. +++-+ .+.++.....|--|-
T Consensus 266 ~l~~--~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~--ed~ni-----~ael~l~~~q~d~~~ 336 (895)
T KOG2076|consen 266 QLLQ--LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASL--EDLNI-----LAELFLKNKQSDKAL 336 (895)
T ss_pred HHHh--hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc--cHHHH-----HHHHHHHhHHHHHhh
Confidence 7652 2222344665555554 888888888877755444333211111111 23321 122222222222222
Q ss_pred HHHHHHHc----------------------CCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhh--ccCCch
Q psy292 245 KHYRAILT----------------------TPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDK--LLNEIP 300 (452)
Q Consensus 245 ~~y~e~~~----------------------t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~--~~~~ip 300 (452)
.+-..--. .+.+..+-+-.+.+ -+.++|.+=..-.+.-.-+++.+..+. ......
T Consensus 337 ~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 337 MKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred HHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 22222211 11111111111112 123344433333444445555555432 122234
Q ss_pred HHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccc---hhhHHHHH---HHHHHHHHHHHHHHHhh---ccceeHHH
Q psy292 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQST---EEGQKCFK---MLKHRVVEHNIRVMAKY---YTRITLQR 371 (452)
Q Consensus 301 ~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~---~~g~~~~~---~L~~~viEhNi~~isk~---Ys~Itl~~ 371 (452)
.+..+.++|++.+ .+...+.-|.+. .+++...... .-| .++. .-..++.=.+...+..| =-+|||+.
T Consensus 416 L~~d~a~al~~~~--~~~~Al~~l~~i-~~~~~~~~~~vw~~~a-~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 416 LYLDLADALTNIG--KYKEALRLLSPI-TNREGYQNAFVWYKLA-RCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHH-hcCccccchhhhHHHH-HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 5788999998774 455555545444 3444432100 001 1111 11222333333344445 46899999
Q ss_pred HHHHhCCChHHHHHHHHhhhh
Q psy292 372 MCDLLGLPIEETEEFLSSMVV 392 (452)
Q Consensus 372 La~ll~ls~~evE~~ls~mI~ 392 (452)
|-+.+|-+. ++-..|.+++.
T Consensus 492 l~~~~g~~E-kalEtL~~~~~ 511 (895)
T KOG2076|consen 492 LYQQLGNHE-KALETLEQIIN 511 (895)
T ss_pred HHHhcCCHH-HHHHHHhcccC
Confidence 999999877 55567777773
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=79.29 E-value=53 Score=30.42 Aligned_cols=99 Identities=10% Similarity=0.007 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-HhhccC--hHHHHHHHHHhhhhhccCCCCch
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRL-CLAKKD--YIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl-~l~~~d--~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.-..|+.+|...|++++|...+..... .. ....++++....+ +...|+ +..|...++++...- +++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~----P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d---P~~-- 143 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQ--LR----GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD---ANE-- 143 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hC----CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC---CCC--
Confidence 445679999999999999999986542 11 2345666666664 566666 589999998887664 322
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
. .. +...|..+...++|-+|-.+|..+++...-
T Consensus 144 ~--~a--l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 144 V--TA--LMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred h--hH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2 22 344588888999999999999999776544
No 103
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.22 E-value=56 Score=30.63 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
-+-+..+||.+....|.+++|.++|..+.-+.+.++-..-+.|+ ++..||-..|..-+.++....
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi-------ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDI-------LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhH-------HHHcCchHHHHHHHHHHHHcc
Confidence 34467888999999999999999999887665544434455554 466789999998888887664
No 104
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=77.85 E-value=7 Score=29.82 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=30.3
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
++...||+.+|++...|.+.|..|...|.+..
T Consensus 23 ~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 23 STALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998755
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=77.52 E-value=24 Score=30.84 Aligned_cols=94 Identities=10% Similarity=-0.079 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHH
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLK 225 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~ 225 (452)
.++..+...|++++|...++.+..- +..-.+++.....++...|++..|...++++...- +++ .+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~--~~a--- 94 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASH--PEP--- 94 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCC--cHH---
Confidence 3588889999999999998875421 12345788888889999999999999999998653 332 222
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+...|..+...+++-+|...|..+..-.
T Consensus 95 -~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 95 -VYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2334888888999999999999987654
No 106
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=77.10 E-value=8.6 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=28.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
=..+|...||+.+|+|..-+-..+.+|+..|-|
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCc
Confidence 566999999999999999999999999999876
No 107
>PLN03077 Protein ECB2; Provisional
Probab=76.59 E-value=1.5e+02 Score=33.99 Aligned_cols=92 Identities=14% Similarity=0.237 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..+...+.+.|++++|.+++++++.+ +. ...+--.+..|...+|...++...+++...- ++ ..
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~~~------pd--~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~---p~------~~ 691 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMPIT------PD--PAVWGALLNACRIHRHVELGELAAQHIFELD---PN------SV 691 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCCCC------CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC------Cc
Confidence 45677888889999998888877532 11 2233333444555677777776666554432 22 22
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.+|.+++..|...+++-+|.+.....-+.
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 35777788888888888888887777443
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.50 E-value=31 Score=33.75 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=68.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH
Q psy292 151 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 230 (452)
Q Consensus 151 ~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~ 230 (452)
+...|+|++|...++.+... +.. ....-..++....+|+..+|+..|.....++...+...+.. + ...|+ .
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~-yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~--~--dAl~k--l 223 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKK-YPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA--A--DAMFK--V 223 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHH-CcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--h--HHHHH--H
Confidence 34569999999999887632 321 11333556777888999999999999999888776333322 2 22233 3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 231 IELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 231 ~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
|..+...+++-.|...|.++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 7777788999999999999987754
No 109
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=76.08 E-value=25 Score=27.85 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=46.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE-EEeccCCChhHHHHHHHHHHHHHH
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI-INFARNKDPGEILNEWSASLNELM 430 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi-V~f~~~~~~~~~l~~W~~~i~~ll 430 (452)
-..++...||+.++++..-+-..+.+|+..|-+...-|+.++- ..+.-.......+..+...+....
T Consensus 22 ~~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~~~~~~~~~~~ 89 (101)
T smart00347 22 EGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEARHETL 89 (101)
T ss_pred cCCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999998877755442 233222223344555554444433
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=76.06 E-value=86 Score=31.10 Aligned_cols=197 Identities=9% Similarity=-0.013 Sum_probs=112.6
Q ss_pred hcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhc-C
Q psy292 34 AEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVD-K 112 (452)
Q Consensus 34 ~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~-~ 112 (452)
.-|+++.+...+....+......+ ......--.-+++..|+++...+.+..+...... ...+-.+ ...++. .
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~--~~~~~~~~ 90 (355)
T cd05804 18 LGGERPAAAAKAAAAAQALAARAT---ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL--HLGAFGLG 90 (355)
T ss_pred hcCCcchHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH--hHHHHHhc
Confidence 345677777766665544432221 2222333455677888998887766655532111 1111111 111110 0
Q ss_pred CCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh
Q psy292 113 TPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCL 192 (452)
Q Consensus 113 ~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l 192 (452)
... .......+.+... ...... .......++.++...|++++|...++....- . ++. ...+.....++.
T Consensus 91 ~~~-~~~~~~~~~l~~~-~~~~~~---~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~--p~~--~~~~~~la~i~~ 159 (355)
T cd05804 91 DFS-GMRDHVARVLPLW-APENPD---YWYLLGMLAFGLEEAGQYDRAEEAARRALEL--N--PDD--AWAVHAVAHVLE 159 (355)
T ss_pred ccc-cCchhHHHHHhcc-CcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C--CCC--cHHHHHHHHHHH
Confidence 000 0011111222211 111111 2334457789999999999999999875421 1 111 345566688899
Q ss_pred hccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 193 AKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 193 ~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+.|++..|..++.++...... + +......+...+.++...+++-+|...|.++...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~-~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDC-S----SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCC-C----cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999988765422 1 2345555666799999999999999999998543
No 111
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=74.65 E-value=14 Score=27.30 Aligned_cols=63 Identities=14% Similarity=0.027 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHhhh
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK-DYIRTQIISKKINT 209 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~-d~~~a~~~~~K~~~ 209 (452)
+..-..+|.++...|++++|...+..... . + ..-...+.....++...+ ++..|.....++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-~----~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE-L----D-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH-H----S-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c----C-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34456789999999999999999987542 1 1 234568888899999998 79999888887754
No 112
>KOG2002|consensus
Probab=74.11 E-value=1.7e+02 Score=33.70 Aligned_cols=104 Identities=11% Similarity=-0.044 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
-+...||..|...|||..+..+....-. .+.....+.+-+....|.|+..|||.+|..++-.+...- +.+.
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~---~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~---- 341 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIK---NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF---- 341 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc----
Confidence 4567899999999999999998876543 233455788889999999999999999998887665432 1111
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
-+-+ .=.|+.+.+.+++.+|..+|..++.+...
T Consensus 342 -~l~~-~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 342 -VLPL-VGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred -cccc-cchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 1111 11277888999999999999999887543
No 113
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=73.90 E-value=14 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=41.1
Q ss_pred HHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 356 NIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 356 Ni~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
.++.+..-+..++...||+.++++..-+=..+.+|+..|-|.-..|..++
T Consensus 7 ~iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 7 RILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 34444555788999999999999999999999999999999887776554
No 114
>KOG0624|consensus
Probab=73.60 E-value=75 Score=32.48 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=93.2
Q ss_pred ccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhc-cCCchhHH--------HHHHHHHHHHHHhccCHHHHHHHH
Q psy292 15 EVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTR-TGSDMVST--------GRILVAIVQICFEAKNWTALNEHI 85 (452)
Q Consensus 15 ~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r-~~~d~~~~--------~~~l~~i~~l~~~~~~~~~l~~~~ 85 (452)
.-||+. ..++...-+.+.|.+++|...+-.+-+... +....+.- -..+.+.++-++..||.....+.+
T Consensus 102 KpDF~~---ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 102 KPDFMA---ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred CccHHH---HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 345544 556777778999999999998877544332 11111111 114555566666667777776666
Q ss_pred HHHHhh---hhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH---HhhcCcchHHHHHHHHHHHHHHHHHhcCCHHH
Q psy292 86 TMLTKR---RSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLR---TVTEGKIYVEVERARLTHILAKMKEDEGDVTE 159 (452)
Q Consensus 86 ~~l~~~---~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~---~~~e~ki~lE~er~~l~~~La~i~e~~gd~~e 159 (452)
+.|..- -..+..+-+++ |+.. .+.+ +.|.-++ .++... -..-.+.++++...||.+.
T Consensus 179 ~~llEi~~Wda~l~~~Rakc------~i~~---~e~k-~AI~Dlk~askLs~Dn-------Te~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKC------YIAE---GEPK-KAIHDLKQASKLSQDN-------TEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHhcCcchhHHHHHHHHH------HHhc---CcHH-HHHHHHHHHHhccccc-------hHHHHHHHHHHHhhhhHHH
Confidence 655521 00011111110 0000 0000 0111111 111111 1122455788888888888
Q ss_pred HHHHHHHHHH------HhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 160 AANIIQELQV------ETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 160 A~~iL~~l~~------Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
++..+.+... -||.....-.|+.-.|+-|.-.++.++|..+-....++.
T Consensus 242 sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 242 SLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8877765432 223333344778888888998999999998876666553
No 115
>KOG3081|consensus
Probab=73.53 E-value=98 Score=30.53 Aligned_cols=187 Identities=12% Similarity=0.123 Sum_probs=92.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECV 107 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~ 107 (452)
-++...=.|++..+|+.-...-+. ..| -.-...+.+-|...|.+.....-|..-. +.--.-|+..-
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~---~~~----~e~d~y~~raylAlg~~~~~~~eI~~~~-------~~~lqAvr~~a 79 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSS---KTD----VELDVYMYRAYLALGQYQIVISEIKEGK-------ATPLQAVRLLA 79 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccc---cch----hHHHHHHHHHHHHccccccccccccccc-------CChHHHHHHHH
Confidence 345555567777777654332111 111 1233445555555665544432221100 00012355555
Q ss_pred hhhcCCCCH-HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q psy292 108 TYVDKTPSK-EIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE 186 (452)
Q Consensus 108 ~~~~~~~~~-~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le 186 (452)
+++..-... +..-++.+-+-.-+.+.+.. ....=|.++...|++++|.+.+.. . +-+|....
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i------~~l~aa~i~~~~~~~deAl~~~~~--~---------~~lE~~Al 142 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLI------DLLLAAIIYMHDGDFDEALKALHL--G---------ENLEAAAL 142 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHH------HHHHhhHHhhcCCChHHHHHHHhc--c---------chHHHHHH
Confidence 555322222 34444455333333333211 223447899999999999998864 1 23345555
Q ss_pred HHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 187 QMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 187 ~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
...+.+...-+.-|...+++....- + ...-.++-...+.+......+.+|+-.|.|.++
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~id--e-----d~tLtQLA~awv~la~ggek~qdAfyifeE~s~ 201 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQID--E-----DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--h-----HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc
Confidence 5555555555555655555443321 1 111223444445555566667777777777776
No 116
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=73.23 E-value=11 Score=28.16 Aligned_cols=59 Identities=14% Similarity=0.069 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 147 LAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 147 La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
|+.+|...++|++|.+.++.+..- . ..-...++....++...|++..|.....++...-
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~-~-----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL-D-----PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh-C-----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467889999999999999886642 1 1245667778888999999999988888887553
No 117
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=72.90 E-value=1.6e+02 Score=32.72 Aligned_cols=197 Identities=12% Similarity=0.029 Sum_probs=98.0
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
.+.-+..+..+|++.+|+..+..+..... . ...++..++-.+...|+++...+.+..+....-.--.+ ..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~----~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a----~~ 114 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAK--N----GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPED----VL 114 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCC--C----chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHH----HH
Confidence 44456667778889999988888554321 1 12456677777777899998888777665421111011 01
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHH
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLI 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~ 184 (452)
.....+....+.+.-+..++....+.++. ......++.++...|++++|...+..+... ..-+. +.+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~----~a~ 181 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGN-------SQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRG----DMI 181 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCH----HHH
Confidence 11111111222233333333222222322 112344577777777777777777654321 11011 111
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
... ..++..+++..|...++++.... ..+. +. .....+..+...++|-+|...|..++..
T Consensus 182 ~~~-~~l~~~g~~~eA~~~~~~~l~~~--~~~~--~~----~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 182 ATC-LSFLNKSRLPEDHDLARALLPFF--ALER--QE----SAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcC--CCcc--hh----HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111 23556677777776666653332 1111 11 1122244445566666666666666544
No 118
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=72.73 E-value=18 Score=26.66 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHc
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEG-SYLATCKHYRAILT 252 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~-df~ea~~~y~e~~~ 252 (452)
.+.+......++..+|+..|.....++...- +++ +. .+..+|..+...+ +|.+|..+|..++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~--~~----~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNN--AE----AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTH--HH----HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC--HH----HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4577888899999999999999999988763 332 22 3455688888887 89999999988753
No 119
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=71.58 E-value=41 Score=36.31 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
|...+-+-.+.++++.|++++|++.|.+-.. ..-.|+.+.-..+++++..|++..|..+++.-...
T Consensus 2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 2 EHSELLLYKNSILEEAGDYEEALEHLEKNEK------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR 67 (517)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhh------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777889999999999999999976332 13478889999999999999999999888765444
No 120
>KOG4414|consensus
Probab=71.57 E-value=11 Score=33.39 Aligned_cols=43 Identities=14% Similarity=0.369 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHH
Q psy292 345 FKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFL 387 (452)
Q Consensus 345 ~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~l 387 (452)
...|++..+.+-..-+++.|++|+...+|-.+|+|++++-+-+
T Consensus 111 maAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddAtk~i 153 (197)
T KOG4414|consen 111 MAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDATKGI 153 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456666666666678899999999999999999999876543
No 121
>KOG3617|consensus
Probab=71.56 E-value=1.3e+02 Score=34.26 Aligned_cols=194 Identities=15% Similarity=0.243 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhh--HHH----------HHH---
Q psy292 36 GKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQ--LKQ----------AVV--- 100 (452)
Q Consensus 36 ~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q--~k~----------av~--- 100 (452)
|+-++|...+.-+- +|..| ..+++.|.+.++.|-..--+..+-.-||- ++. +++
T Consensus 742 G~MD~AfksI~~Ik------S~~vW-----~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVW-----DNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHH-----HHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 55566666554443 45566 67889999988887664444433322221 111 111
Q ss_pred ---HHHHHHHhhhcCCCCHHHHHHHHHHH--H------HhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 101 ---KMIQECVTYVDKTPSKEIKVKLIETL--R------TVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 101 ---~~v~~~~~~~~~~~~~~~~~~l~~~L--~------~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
.|+..+.....+.+--++.-+|++.. | +-++.+|.+ |. .-.+.|+.+++.+|++.|++.++.-.+
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~-Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHL---RN-TYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceeh---hh-hHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 14555555544444345566666643 2 223345555 32 236779999999999999988765432
Q ss_pred Hhc---cCcch-HHHHHHHHHHHH---H------Hhhc-cChHHHHHHHHHhhhh------------------hccCCCC
Q psy292 170 ETY---GSMEK-KEKVTLILEQMR---L------CLAK-KDYIRTQIISKKINTK------------------FFDDEKD 217 (452)
Q Consensus 170 Et~---~~~~~-~~k~e~~Le~~r---l------~l~~-~d~~~a~~~~~K~~~~------------------~~~~~~~ 217 (452)
-.+ +-+.+ -.-++.|...+| | |++. |+...|-.++.++..- +-++.|+
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD 966 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc
Confidence 111 11111 122233322221 1 2322 4444554555554221 1123333
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 218 DVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
+-.-|+. ++.|...++|-+|-+.|-.+
T Consensus 967 ----~AAcYhl--aR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 967 ----KAACYHL--ARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ----HHHHHHH--HHHhhhhHHHHHHHHHHHHH
Confidence 3345554 88888888888888777655
No 122
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=71.51 E-value=5.6 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
..|+.+|.+.|+|++|.++++...
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468999999999999999998744
No 123
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=71.34 E-value=6.7 Score=30.62 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
+..+++++...|...||+.+|+|+.-|...+..+...|.+
T Consensus 23 af~L~R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 23 AAALAREEAGKTASEIAEELGRTEQTVRNHLKGETKAGGL 62 (73)
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccchH
Confidence 3445577899999999999999999999999988877765
No 124
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=70.64 E-value=16 Score=28.72 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=36.1
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccC
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 412 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~ 412 (452)
.++...||+.+++|+..+++.+.++...|-+..+=-+..|+.--.++
T Consensus 25 ~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~ 71 (83)
T PF02082_consen 25 PVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPP 71 (83)
T ss_dssp -BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-C
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCH
Confidence 39999999999999999999999999999887664444455444444
No 125
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=70.14 E-value=21 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=38.1
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
++.+.|++.+|+|...+-..+..|...|-+...-+...+...+..
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 999999999999999999999999999999887666445555543
No 126
>KOG1129|consensus
Probab=68.72 E-value=43 Score=33.94 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.-..++++-|.+-|-+.+|.+.|+. ++.-..-.|.+|..+|.|-..+...+|-.++......+ |+
T Consensus 224 wWk~Q~gkCylrLgm~r~Aekqlqs-------sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~----- 288 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQS-------SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PF----- 288 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHH-------HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---Cc-----
Confidence 3457789999999999999999875 33445667889999999999999999988776555544 32
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
-+.|..=++++|.+-+++-+|.++|.++....++
T Consensus 289 -~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 289 -DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred -hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 2344455689999999999999999999876544
No 127
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=68.26 E-value=38 Score=29.33 Aligned_cols=71 Identities=15% Similarity=0.342 Sum_probs=50.2
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE-EEec-cCCcEEEeccCCCh-------hHHHHHHHHHHHHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT-AKID-RPAGIINFARNKDP-------GEILNEWSASLNELMKLVNN 435 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~-akID-q~~giV~f~~~~~~-------~~~l~~W~~~i~~ll~~v~k 435 (452)
.-.|.+.||+.++++..-|.+-|-+++.-|.+. -+.. ...|....-.+-++ ...+++|..++.+++...++
T Consensus 41 ~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~~w~~~~~~~i~~~~~ 120 (126)
T COG3355 41 GPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKILKDLDEWYDKMKQLIEEFEK 120 (126)
T ss_pred CCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778999999999999999999999999884 3444 33344322223232 35688888888887776654
No 128
>KOG0553|consensus
Probab=67.66 E-value=63 Score=32.16 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=95.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHh
Q psy292 230 MIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWF 309 (452)
Q Consensus 230 ~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f 309 (452)
+|.=+...++|.+|-..|-+++.- +|...+-....+..|.=|.-+.+-..+-...+.-||...+ +|..|--+|
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk--ay~RLG~A~ 159 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK--AYGRLGLAY 159 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH--HHHHHHHHH
Confidence 466677899999999999999754 3333444445566666677677777777777777765443 677788888
Q ss_pred cCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCCh---------
Q psy292 310 TNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPI--------- 380 (452)
Q Consensus 310 ~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~--------- 380 (452)
++.. ++.+....|...|.= +++....|+.|.. .|.++.--..+=..+.-..++.++|-+|
T Consensus 160 ~~~g--k~~~A~~aykKaLel-------dP~Ne~~K~nL~~--Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~~~ 228 (304)
T KOG0553|consen 160 LALG--KYEEAIEAYKKALEL-------DPDNESYKSNLKI--AEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFNGD 228 (304)
T ss_pred HccC--cHHHHHHHHHhhhcc-------CCCcHHHHHHHHH--HHHHhcCCCcccccccchhhhhhccCCccchhhhccc
Confidence 7763 566666777776642 2333333443332 3333333333345566677777777732
Q ss_pred ----HHHHHHHHhhhhcCcEEE
Q psy292 381 ----EETEEFLSSMVVSKTITA 398 (452)
Q Consensus 381 ----~evE~~ls~mI~~~~l~a 398 (452)
..+-...+.|+.+|.+.+
T Consensus 229 l~nnp~l~~~~~~m~~~~~~~~ 250 (304)
T KOG0553|consen 229 LMNNPQLMQLASQMMKDGALNG 250 (304)
T ss_pred cccCHHHHHHHHHHhhcccccC
Confidence 456677888888766655
No 129
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=67.61 E-value=24 Score=30.48 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhcc
Q psy292 135 YVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD 213 (452)
Q Consensus 135 ~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~ 213 (452)
+++..+..+-..++..+...|++++|...++.+... .. .--..+..-|+++...|+...|...+.+......+
T Consensus 56 ~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP----~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 56 RLRELYLDALERLAEALLEAGDYEEALRLLQRALAL--DP----YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--ST----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 344555667788899999999999999999887632 21 12246777799999999999999999988776543
No 130
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=67.60 E-value=13 Score=30.49 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=36.0
Q ss_pred HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEecc
Q psy292 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDR 402 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq 402 (452)
..+...+++++.||+.+|+|+..+-+.+.+|...|-+. +.+|+
T Consensus 11 ~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~~~ 56 (108)
T smart00344 11 ELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVINP 56 (108)
T ss_pred HHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEEEeCH
Confidence 33345789999999999999999999999999999765 45564
No 131
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.37 E-value=52 Score=32.19 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=75.3
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
....|-.++++|++..|...+...-+.-. .+.-+..+-.=+++.+|..|+++..-..+-...+..++-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-------- 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-------- 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC--------
Confidence 45677788999999999999999665432 2233456888899999999999998777665554322221
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY 172 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~ 172 (452)
+.|| -..+|+.+..+.|+.++|...|+++..+ |
T Consensus 213 -------KApd---------------------------allKlg~~~~~l~~~d~A~atl~qv~k~-Y 245 (262)
T COG1729 213 -------KAPD---------------------------ALLKLGVSLGRLGNTDEACATLQQVIKR-Y 245 (262)
T ss_pred -------CChH---------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHH-C
Confidence 1122 3467788888999999999999999865 5
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=67.30 E-value=21 Score=26.12 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q psy292 32 MAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR 91 (452)
Q Consensus 32 ~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~ 91 (452)
+.+.|++++|++.+..+-... +. ...+...++++|++.|+++.-.+.+..+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356788999999988854322 12 2356778999999999999998888777754
No 133
>KOG1861|consensus
Probab=66.34 E-value=85 Score=33.24 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhhhHHH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHH--
Q psy292 227 YRLMIELDQHEGSYLA--TCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLY-- 302 (452)
Q Consensus 227 ~~~~~~~~~~~~df~e--a~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~-- 302 (452)
|+..+++....+|--| =|+.=+..+-.+.+.. ......-|-|+|-|++...++...+|..+..+ ..+-|..
T Consensus 351 YEtHARIALEkGD~~EfNQCQtQLk~LY~egipg---~~~EF~AYriLY~i~tkN~~di~sll~~lt~E--~ked~~V~h 425 (540)
T KOG1861|consen 351 YETHARIALEKGDLEEFNQCQTQLKALYSEGIPG---AYLEFTAYRILYYIFTKNYPDILSLLRDLTEE--DKEDEAVAH 425 (540)
T ss_pred ehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCC---chhhHHHHHHHHHHHhcCchHHHHHHHhccHh--hccCHHHHH
Confidence 6667778777777665 2332222222444432 24556778899999999888777777776642 3333333
Q ss_pred -HHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHH-HHHHHHHHHHHHHHHHHhhcc-ceeHHHHHHHhCCC
Q psy292 303 -KGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKC-FKMLKHRVVEHNIRVMAKYYT-RITLQRMCDLLGLP 379 (452)
Q Consensus 303 -~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~-~~~L~~~viEhNi~~isk~Ys-~Itl~~La~ll~ls 379 (452)
-.+..+-..++.. .+...| ..-|.+. .+ ...+..+-+-.-+.+++|.|. +|+++.|++.|.+.
T Consensus 426 AL~vR~A~~~GNY~---kFFrLY----~~AP~M~-------~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~ 491 (540)
T KOG1861|consen 426 ALEVRSAVTLGNYH---KFFRLY----LTAPNMS-------GYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFD 491 (540)
T ss_pred HHHHHHHHHhccHH---HHHHHH----hhcccch-------hHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhc
Confidence 2455555544322 222222 2234442 12 245666677777889999999 99999999988765
Q ss_pred h
Q psy292 380 I 380 (452)
Q Consensus 380 ~ 380 (452)
.
T Consensus 492 ~ 492 (540)
T KOG1861|consen 492 S 492 (540)
T ss_pred h
Confidence 3
No 134
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=66.03 E-value=1.6e+02 Score=29.97 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=103.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHHHHHH-HHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQAVVKM-IQE 105 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~av~~~-v~~ 105 (452)
-++.-..+|=++-|.+.+..|-. .++-.-.|+.+++.+|-..++|.+..+.-..|.+--+|- +--|+.. ..-
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~d------e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVD------EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhc------chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 34455556766777777776542 122223489999999999999999998866666543343 2333332 222
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 106 CVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
+..... ..+.+-.+.+++ +..++.+-.+ |.+..|.+++...|+|.+|.+.++.+.- . ++..--+++-
T Consensus 187 Aq~~~~-~~~~d~A~~~l~--kAlqa~~~cv-----RAsi~lG~v~~~~g~y~~AV~~~e~v~e--Q---n~~yl~evl~ 253 (389)
T COG2956 187 AQQALA-SSDVDRARELLK--KALQADKKCV-----RASIILGRVELAKGDYQKAVEALERVLE--Q---NPEYLSEVLE 253 (389)
T ss_pred HHHHhh-hhhHHHHHHHHH--HHHhhCccce-----ehhhhhhHHHHhccchHHHHHHHHHHHH--h---ChHHHHHHHH
Confidence 222221 111122222222 4445555533 4557789999999999999999988652 1 3445556666
Q ss_pred HHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 186 EQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 186 e~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.-+..|...|+......+..++....
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 66777888999998888888776654
No 135
>KOG2376|consensus
Probab=65.29 E-value=2.1e+02 Score=31.28 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-h------hhhhHHHHHHHHHHHHHhh
Q psy292 37 KFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT-K------RRSQLKQAVVKMIQECVTY 109 (452)
Q Consensus 37 ~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~-~------~~~q~k~av~~~v~~~~~~ 109 (452)
....|++.|+..-.+. -.-.+-++..++++.+.+|+|....+.+..+. . ..+.+.. +|-.+...
T Consensus 356 ~~~ka~e~L~~~~~~~-----p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~----~V~aiv~l 426 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-----PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG----TVGAIVAL 426 (652)
T ss_pred HHhhhHHHHHHHhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh----HHHHHHHH
Confidence 3556677666643321 11134578888999999999999988766322 1 1112222 34444444
Q ss_pred hcCCCCH----HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 110 VDKTPSK----EIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 110 ~~~~~~~----~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
.-.+.+. ++..+-+.-.+.-..+++- -.-+...+|.+.+..|.-++|...|++|..- .+. +.. .|
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~----l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~-d~~-----~l 495 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIA----LLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPN-DTD-----LL 495 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchH----HHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCc-hHH-----HH
Confidence 4344443 3444444444444445532 2335567899999999999999999998742 121 111 11
Q ss_pred HHHHHHhhccChHHHHHHHHHhhh
Q psy292 186 EQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 186 e~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
-+.=..+..=|..+|..++++.-+
T Consensus 496 ~~lV~a~~~~d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 496 VQLVTAYARLDPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHHhcCHHHHHHHhhcCCC
Confidence 111123445577788888776654
No 136
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=65.16 E-value=11 Score=25.70 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=29.7
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.++...||+.+|+|...+-+.+..|...|-+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=64.73 E-value=1.5e+02 Score=30.93 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH-HHhhcCcchHHHHHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETL-RTVTEGKIYVEVERAR 142 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L-~~~~e~ki~lE~er~~ 142 (452)
.+..+++++-..++++...+.+..|.++-.. ...-+.+-.+. .+.+ .+.++.+ ..+++.... ..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-----~~~E--~~AI~ll~~aL~~~p~d-----~~ 235 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLL-----MNEE--VEAIRLLNEALKENPQD-----SE 235 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-----cCcH--HHHHHHHHHHHHhCCCC-----HH
Confidence 6777788888889999998888888865422 22223332221 1222 2334434 223332221 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~ 207 (452)
+-...|+++...|+++.|+++.+..- +. . -...+.+..-++.|+..+|+..|-.+++-+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av-~l---s--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAV-EL---S--PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-Hh---C--chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66677999999999999999998743 11 1 133456777899999999999999988844
No 138
>KOG3250|consensus
Probab=63.44 E-value=32 Score=32.58 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=57.1
Q ss_pred HHhhccceeHHHHHHHhCC-ChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccC-------CC---hhHHHHHHHHHHHH
Q psy292 360 MAKYYTRITLQRMCDLLGL-PIEETEEFLSSMVVSKTITAKIDRPAGIINFARN-------KD---PGEILNEWSASLNE 428 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~l-s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~-------~~---~~~~l~~W~~~i~~ 428 (452)
.+.+-+.|--.-|-.++.+ ++-++|.+|.+.+-.+-+.|||||-++..+..+. ++ .--.|..|.+.-.+
T Consensus 103 las~~k~lpy~~Ll~~l~~~nvrelEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~~TL~~w~~~cen 182 (258)
T KOG3250|consen 103 LASFEKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMKYTLDEWCEGCEN 182 (258)
T ss_pred hhhhchhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777 4689999999999999999999999998554432 22 22458889888888
Q ss_pred HHHHHHH
Q psy292 429 LMKLVNN 435 (452)
Q Consensus 429 ll~~v~k 435 (452)
++-.|+.
T Consensus 183 vL~~ie~ 189 (258)
T KOG3250|consen 183 VLFGIEA 189 (258)
T ss_pred HHHHHHh
Confidence 8877765
No 139
>KOG3054|consensus
Probab=63.17 E-value=16 Score=35.11 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
+++--+.|-|+.||..|||-.+++-.-+-.++.+|.|.|.||--...|....
T Consensus 208 YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~ 259 (299)
T KOG3054|consen 208 YIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISM 259 (299)
T ss_pred HHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecH
Confidence 4555889999999999999999999999999999999999999888877753
No 140
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=63.14 E-value=11 Score=27.73 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=31.0
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
..++...||+.+|+|..-+.+.+..|...|.|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3589999999999999999999999999998764
No 141
>KOG1128|consensus
Probab=62.52 E-value=54 Score=36.46 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HhccCcchHHHHHHHHHH-------HHHHhhccChHHHHHHHHHh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQV-----ETYGSMEKKEKVTLILEQ-------MRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~-----Et~~~~~~~~k~e~~Le~-------~rl~l~~~d~~~a~~~~~K~ 207 (452)
+-.+...||.++.+.|=..+|..+.+.+.. +||..++...|.+.++.+ .|+|-..||+..=.....|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHH
Confidence 445778889999999999999999888764 346677777888888877 67777788766555555555
Q ss_pred hhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCH-----------HHHHHHHHHHHHHHHh
Q psy292 208 NTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDP-----------IQRHAVLQNVVLYLML 276 (452)
Q Consensus 208 ~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~-----------~~~~~~Lk~~vl~~IL 276 (452)
.... +.. .-+.+++ .+.....+.+|-++-+++..++.-.+.+.+. .+...+.+++-.|.=|
T Consensus 477 wEls-n~~-----sarA~r~--~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 477 WELS-NYI-----SARAQRS--LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHh-hhh-----hHHHHHh--hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 4332 111 1122222 2444445788888888888887766554322 2334467778888888
Q ss_pred CCCChhhh
Q psy292 277 APYDNEQS 284 (452)
Q Consensus 277 a~~~~~~~ 284 (452)
.|..-+-.
T Consensus 549 ~Pd~~eaW 556 (777)
T KOG1128|consen 549 EPDNAEAW 556 (777)
T ss_pred CCCchhhh
Confidence 88654433
No 142
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=62.12 E-value=15 Score=23.84 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=24.2
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
+|-..||+.+|++++-|=+.++++-.+|.|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 566789999999999999999999888754
No 143
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=61.97 E-value=29 Score=24.69 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=36.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
-..+++..|++.+|++...+-+.+..|...|-+...-+...+...+
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~ 53 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSL 53 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEE
Confidence 4678999999999999999999999999999987554433333433
No 144
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=61.38 E-value=22 Score=26.75 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
..-++-..+|+.+|+|.-.+-..|..+..+|++.
T Consensus 13 ~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 13 NGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp TS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 7779999999999999999999999999999885
No 145
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=61.28 E-value=89 Score=28.06 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=47.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE-Ee-ccCCcEEEeccCCChhHHHHHHHHHHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA-KI-DRPAGIINFARNKDPGEILNEWSASLNELMKLV 433 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a-kI-Dq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v 433 (452)
+-+|-+.||+++|++..+|-+.|..+..+|.+.- +. |-..|...+-+.-+..++...-...+..+...+
T Consensus 27 ~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~l 97 (158)
T TIGR00373 27 GEFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKL 97 (158)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999998832 22 444566666654444445544444444444443
No 146
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=60.43 E-value=17 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
...||..|.+.|++++|.++++.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888888888888887653
No 147
>PRK09954 putative kinase; Provisional
Probab=60.38 E-value=22 Score=36.18 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=43.2
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccCCcEEEec
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRPAGIINFA 410 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~~giV~f~ 410 (452)
|+.+.+--.++|.+.||+.||+|..-|-..|.+|...|.+. ..+|+..+++.+.
T Consensus 8 il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~viG 64 (362)
T PRK09954 8 ILAILRRNPLIQQNEIADILQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVG 64 (362)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEEE
Confidence 44444445789999999999999999999999999999874 3777777776543
No 148
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=60.24 E-value=2.2e+02 Score=29.58 Aligned_cols=260 Identities=15% Similarity=0.087 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
|++.-..-+-+...+|+|.+|-+.+..-. | .+ ...+--++.-+|..-..+|+.++.-+.+++...- +++
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rna-e----~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~---~~~-- 151 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNA-E----HG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA---GDD-- 151 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhh-h----cC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC---CCc--
Confidence 44555555777888999999999998622 1 11 2444566777888999999999999999887663 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCc
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEI 299 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~i 299 (452)
.+.=...+.++....+||=.|-..-.++...-.- -..+|+-++-|.+=+..-..--.++-++.+...+. -
T Consensus 152 ---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-~ 221 (400)
T COG3071 152 ---TLAVELTRARLLLNRRDYPAARENVDQLLEMTPR------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-D 221 (400)
T ss_pred ---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-h
Confidence 2222456789999999998888887777654322 12344444444443332222222222222211111 1
Q ss_pred hHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhh-HHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCC
Q psy292 300 PLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEG-QKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL 378 (452)
Q Consensus 300 p~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g-~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~l 378 (452)
+.+..|.. ..++..|.. .......+| ..||+.+-+.++-| -.|.......++.+
T Consensus 222 ~e~~~le~--------------~a~~glL~q--~~~~~~~~gL~~~W~~~pr~lr~~---------p~l~~~~a~~li~l 276 (400)
T COG3071 222 EEAARLEQ--------------QAWEGLLQQ--ARDDNGSEGLKTWWKNQPRKLRND---------PELVVAYAERLIRL 276 (400)
T ss_pred HHHHHHHH--------------HHHHHHHHH--HhccccchHHHHHHHhccHHhhcC---------hhHHHHHHHHHHHc
Confidence 11111111 233333322 110011223 45788877776652 22334445555666
Q ss_pred ChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy292 379 PIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQM 445 (452)
Q Consensus 379 s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~ 445 (452)
..++.=..+..=...+.-.+.+=+.-+.+.+.++.+-...+..|.++...==...-.++++--|++-
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 5433333333333333344556666666777777777788888988765555555566666555554
No 149
>KOG0624|consensus
Probab=59.52 E-value=2.2e+02 Score=29.33 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=88.0
Q ss_pred hcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHH
Q psy292 34 AEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQ------AVVKMIQECV 107 (452)
Q Consensus 34 ~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~------av~~~v~~~~ 107 (452)
..|++..||-.+...-|- +.| +...+..|.+++|..|+...-+.-|..-.|.----|. ++-|+|..+-
T Consensus 201 ~~~e~k~AI~Dlk~askL---s~D---nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKL---SQD---NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred hcCcHHHHHHHHHHHHhc---ccc---chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 345555555555444432 233 3457888999999999998887776665542111111 1222332222
Q ss_pred hhhcCCCCHHHHHHHHH---HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHH
Q psy292 108 TYVDKTPSKEIKVKLIE---TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLI 184 (452)
Q Consensus 108 ~~~~~~~~~~~~~~l~~---~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~ 184 (452)
..=..+.+ ....+.++ .+-...+.-+-+ |.+.-..+++.+.+.|++.+|.+...++.- .+..-++.+
T Consensus 275 s~e~~ie~-~~~t~cle~ge~vlk~ep~~~~i---r~~~~r~~c~C~~~d~~~~eAiqqC~evL~------~d~~dv~~l 344 (504)
T KOG0624|consen 275 SAEQAIEE-KHWTECLEAGEKVLKNEPEETMI---RYNGFRVLCTCYREDEQFGEAIQQCKEVLD------IDPDDVQVL 344 (504)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHhcCCcccce---eeeeeheeeecccccCCHHHHHHHHHHHHh------cCchHHHHH
Confidence 11101111 11122222 111111111112 455557788999999999999998887652 123446677
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhh
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
...+.-|+...+|..|-.-+.++..
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7777788888888877777776643
No 150
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.48 E-value=14 Score=22.78 Aligned_cols=26 Identities=31% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVE 170 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~E 170 (452)
..+|.++...|++++|.+.++.+..+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56789999999999999999987643
No 151
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=59.45 E-value=30 Score=29.96 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=35.7
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV 407 (452)
.++.+.||+.+++|+..+++.+..|...|-+...=-...|+.
T Consensus 25 ~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~ 66 (135)
T TIGR02010 25 PVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQ 66 (135)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEe
Confidence 599999999999999999999999999998876544444543
No 152
>PF12728 HTH_17: Helix-turn-helix domain
Probab=59.34 E-value=20 Score=25.24 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=33.9
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHH
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA 424 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~ 424 (452)
+|.+.+|++||+|...+. +++..|.|.+. +..+.+.|.. +.+++|-+
T Consensus 2 lt~~e~a~~l~is~~tv~----~~~~~g~i~~~--~~g~~~~~~~-----~~l~~~~~ 48 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVY----RWIRQGKIPPF--KIGRKWRIPK-----SDLDRWLE 48 (51)
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCeE--EeCCEEEEeH-----HHHHHHHH
Confidence 478899999999988755 56788999776 3555566654 35667754
No 153
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=59.18 E-value=22 Score=25.28 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=32.2
Q ss_pred HHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 359 VMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 359 ~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.++..=..+++..||+.+|+|..-+-+.+..|...|-+.
T Consensus 11 ~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 11 ALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp CHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 344555668999999999999999999999999998663
No 154
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=58.69 E-value=62 Score=31.23 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=50.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLV 433 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v 433 (452)
-++.-+.||.-+|+|++-|-..+-+||.+|-+.- .|-.++.=.+.-.+.+-+|..++....+.+
T Consensus 24 p~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~-----~gR~~Y~iTkkG~e~l~~~~~dlr~f~~ev 87 (260)
T COG1497 24 PRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK-----EGRGEYEITKKGAEWLLEQLSDLRRFSEEV 87 (260)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHhccceee-----cCCeeEEEehhHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999997654 333333333344678888888888888887
No 155
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=57.91 E-value=28 Score=25.23 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=27.8
Q ss_pred eHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 368 TLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 368 tl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
+...||+.+|+|..-+-+.+..|...|-|.
T Consensus 27 ~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 27 SERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 489999999999999999999999999764
No 156
>KOG1538|consensus
Probab=57.82 E-value=3.1e+02 Score=30.59 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 227 YRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 227 ~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
|...++|......|.||-+.|+.+
T Consensus 807 y~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 807 YMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cchHHHHhhhhhhHHHHHHHHHHh
Confidence 445599999999999999999988
No 157
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=57.54 E-value=2.3e+02 Score=29.11 Aligned_cols=267 Identities=10% Similarity=0.083 Sum_probs=144.5
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQE 105 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~ 105 (452)
+.++-...-+|+++.|...+..-.+ .+|.+... ...........|+++.-.+++....+.-.. ..++..+..
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~----~~~~p~l~--~llaA~aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~ 159 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNAD----HAEQPVVN--YLLAAEAAQQRGDEARANQHLERAAELADN--DQLPVEITR 159 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh----cccchHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHH
Confidence 4444455567889988844443222 12323222 222345557899999998888777642111 112221121
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHH----
Q psy292 106 CVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKV---- 181 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~---- 181 (452)
.--++. ..+.+.-...++.+....++.. .....++.+|...|+|++|.++|..+.. .+.+++.+..
T Consensus 160 a~l~l~-~g~~~~Al~~l~~~~~~~P~~~-------~al~ll~~~~~~~gdw~~a~~~l~~l~k--~~~~~~~~~~~l~~ 229 (398)
T PRK10747 160 VRIQLA-RNENHAARHGVDKLLEVAPRHP-------EVLRLAEQAYIRTGAWSSLLDILPSMAK--AHVGDEEHRAMLEQ 229 (398)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCCCHHHHHHHHH
Confidence 212221 2333445555555555555543 2345668899999999999999998875 3555544333
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHH
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPI 261 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~ 261 (452)
..++..+.......+........+...... +++ ++....| +..+...+++-+|.+...+.+..+. | +
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~---~~~--~~~~~~~----A~~l~~~g~~~~A~~~L~~~l~~~~---~-~ 296 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKT---RHQ--VALQVAM----AEHLIECDDHDTAQQIILDGLKRQY---D-E 296 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH---hCC--HHHHHHH----HHHHHHCCCHHHHHHHHHHHHhcCC---C-H
Confidence 233443444444455444444444433332 233 4554443 7888889999999999998876432 2 2
Q ss_pred HHHHHHHHHHHHHHhCCCC-hhhhHhHHhhhhhhccCCchH-HHHHHHHhcCCcccCchhHHHHHHHHhccCCC
Q psy292 262 QRHAVLQNVVLYLMLAPYD-NEQSDLTHRVLEDKLLNEIPL-YKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333 (452)
Q Consensus 262 ~~~~~Lk~~vl~~ILa~~~-~~~~~ll~~~~~~~~~~~ip~-~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~ 333 (452)
+ .+.+|+-+...+ ...-..+.+..+ .-|+-|. ...+...+.... .|......|+..+..+|-
T Consensus 297 ~------l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~--~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 297 R------LVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHG--EWQEASLAFRAALKQRPD 360 (398)
T ss_pred H------HHHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCC
Confidence 1 123344343322 233333333332 2233343 335566666553 587777788888776554
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=57.16 E-value=72 Score=23.08 Aligned_cols=58 Identities=12% Similarity=-0.115 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
..++.++...|++++|.+.++....- ... . .+.+.....++...+++..|.....++.
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKALEL-DPD---N--AKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCc---c--hhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45577777778888888888765421 111 1 1566666777788888888877766654
No 159
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=56.58 E-value=30 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.501 Sum_probs=25.2
Q ss_pred HhhccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 361 AKYYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 361 sk~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
-.||...|++.+|+.+|+|...|-....+.+
T Consensus 15 ~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al 45 (50)
T PF04545_consen 15 LRYFEGLTLEEIAERLGISRSTVRRILKRAL 45 (50)
T ss_dssp HHHTST-SHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 3458999999999999999998887776654
No 160
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=56.49 E-value=3.9e+02 Score=31.41 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
...++.++.+.|++++|...+.....- ++. -.+.+..-..++...+++..|...++++.... |++ .+.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~---P~~--~~a- 679 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALEL-----EPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL---PDD--PAL- 679 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC--HHH-
Confidence 356677778888888888777765421 111 11345555555666778888877777776543 333 332
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+...+..+...++|-+|-.+|..++...
T Consensus 680 ---~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 680 ---IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2234777788888888888888887653
No 161
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=56.30 E-value=26 Score=21.85 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l 167 (452)
+-..++.+|...|++++|...++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456788888888888888877754
No 162
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=56.13 E-value=27 Score=23.98 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=21.0
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSM 390 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~m 390 (452)
-.+.++..||+.+|+|+..|-.-+.+|
T Consensus 15 d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 15 DGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp -TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 389999999999999999988776654
No 163
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=56.12 E-value=28 Score=30.91 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=35.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEecc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDR 402 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq 402 (452)
=.+++.+.||+.+|+|+..+-.-+-+|..+|-|. +.+|.
T Consensus 21 d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~ 62 (153)
T PRK11179 21 NARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNP 62 (153)
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 3899999999999999999999999999999885 46774
No 164
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=55.85 E-value=23 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQ 165 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~ 165 (452)
....||..+...|++++|..++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999998875
No 165
>KOG1498|consensus
Probab=55.58 E-value=7.2 Score=40.01 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=72.8
Q ss_pred cccccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCC---chhHHHHHHHHHHHHHHhccCHHHHHHHHH
Q psy292 10 RIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGS---DMVSTGRILVAIVQICFEAKNWTALNEHIT 86 (452)
Q Consensus 10 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~---d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~ 86 (452)
+.+.+..++.+.....|+..+-+.--+-+.+-.+.++..+..++... |.+++-..+..-..-|...+.|+..++.+.
T Consensus 338 RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~~~~~LneW~~nve~L~ 417 (439)
T KOG1498|consen 338 RIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKDSNEILNEWASNVEKLL 417 (439)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEEEecccHHHHHHHHHhhHHHHH
Confidence 46777888888888888888877666668888899999887777765 777766666666677788889999999999
Q ss_pred HHHhhhhhHHHHHHHH
Q psy292 87 MLTKRRSQLKQAVVKM 102 (452)
Q Consensus 87 ~l~~~~~q~k~av~~~ 102 (452)
.+..|++++=.+...|
T Consensus 418 ~ll~K~~HLI~KEemm 433 (439)
T KOG1498|consen 418 GLLEKVSHLIHKEEMM 433 (439)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999984443333
No 166
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=55.57 E-value=45 Score=32.88 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=36.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccC
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 403 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~ 403 (452)
--.|+++.||..+++|.+++-+.+......+.|+|++|..
T Consensus 128 ~G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~ 167 (272)
T PF09743_consen 128 SGQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD 167 (272)
T ss_pred cCeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC
Confidence 5889999999999999999996777778888999999988
No 167
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.50 E-value=1.8e+02 Score=27.29 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
-..+.+|+-+.+.|++++|...|+...- .+-|...|.=.-++.+|+-+..+.+..|-.++.-+. +.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-----~~~----- 156 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-----EES----- 156 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-----ccc-----
Confidence 3558889999999999999999986432 344555666677888999999999999887766322 222
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
...++-.+.|.++...+|=-+|-..|-.+.+..
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 233444666999999999999999999998876
No 168
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=55.49 E-value=46 Score=22.83 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=30.6
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
..++...|++.+++|+.-+...+..|...|.+..
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999987753
No 169
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=55.18 E-value=1.2e+02 Score=25.18 Aligned_cols=42 Identities=5% Similarity=0.004 Sum_probs=37.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++.+.||+.+|++..-+=..+-+|...|-|...-|..++
T Consensus 40 ~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~ 81 (118)
T TIGR02337 40 QGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQ 81 (118)
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCC
Confidence 567999999999999999999999999999999888776665
No 170
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=55.11 E-value=26 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
.....||.+|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455778999999999999999998764
No 171
>KOG3060|consensus
Probab=54.76 E-value=1.6e+02 Score=28.84 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
..||.+|...|+|++|+-+++++..
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5679999999999999999998765
No 172
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.53 E-value=3.6e+02 Score=30.36 Aligned_cols=184 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred ccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH
Q psy292 17 DYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK 96 (452)
Q Consensus 17 d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k 96 (452)
||+..++....-|+-+..-|..++|...|..+-.-+ .|.. .+....+.++++.++++.-...+..+...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~---~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----- 149 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSS---EAFILMLRGVKRQQGIEAGRAEIELYFSG----- 149 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcH---HHHHHHHHHHHHhccHHHHHHHHHHHhhc-----
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc
Q psy292 97 QAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME 176 (452)
Q Consensus 97 ~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~ 176 (452)
.|+ .+.....+|..+.+.|++++|..+++.+...
T Consensus 150 ----------------~p~------------------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------ 183 (694)
T PRK15179 150 ----------------GSS------------------------SAREILLEAKSWDEIGQSEQADACFERLSRQ------ 183 (694)
T ss_pred ----------------CCC------------------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Q ss_pred hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 177 KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 177 ~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
.-.--+.++....+....|+...|...++++.... .+|. ..+-.+.-. +.+--.+++-++....
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGA--RKLTRRLVD------------LNADLAALRRLGVEGD 247 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--Ccch--HHHHHHHHH------------HHHHHHHHHHcCcccc
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy292 257 QSDPIQRHAVLQNVVLY 273 (452)
Q Consensus 257 ~~d~~~~~~~Lk~~vl~ 273 (452)
.-|.+-++-++|+++++
T Consensus 248 ~~~~~~~~~~~~~~~~~ 264 (694)
T PRK15179 248 GRDVPVSILVLEKMLQE 264 (694)
T ss_pred cCCCceeeeeHHHHHHH
No 173
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=54.23 E-value=27 Score=23.65 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=33.2
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHH
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA 424 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~ 424 (452)
+|+..+|+.||+|..-+.. ++.+|.|.+... .|...|.. +.+..|-+
T Consensus 2 lt~~e~a~~lgis~~ti~~----~~~~g~i~~~~~--g~~~~~~~-----~~l~~~~~ 48 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYR----LIHEGELPAYRV--GRHYRIPR-----EDVDEYLE 48 (49)
T ss_pred CCHHHHHHHHCCCHHHHHH----HHHcCCCCeEEe--CCeEEEeH-----HHHHHHHh
Confidence 4789999999999986555 567899887543 35556653 35666753
No 174
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=54.00 E-value=28 Score=31.30 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=40.4
Q ss_pred HHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEecc
Q psy292 354 EHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDR 402 (452)
Q Consensus 354 EhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq 402 (452)
.+-|+.+-+--.+++...||+.+|+|+.-+-.-+-+|..+|.|. +.+|.
T Consensus 16 D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p 67 (164)
T PRK11169 16 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNP 67 (164)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 33444455668899999999999999999999999999999874 56663
No 175
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=53.51 E-value=33 Score=29.27 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=34.6
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
.++.+.||+.+|+|+..+.+.+..|...|-+...-....|+
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy 65 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGY 65 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCc
Confidence 69999999999999999999999999999887643343443
No 176
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=52.54 E-value=28 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=29.4
Q ss_pred ce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RI-TLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.+ |...||+.+|+|..-+.+.+..|...|.+.
T Consensus 19 ~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 19 KLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46 899999999999999999999999999775
No 177
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=52.53 E-value=60 Score=26.61 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 200 TQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 200 a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
...+.+.+.+.++.+-++ ++-++|||.+++.|....--=-+...+|.++|+
T Consensus 21 ~~~~l~~Il~pVL~~~~D--~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~ 71 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDD--QDSRVRYYACEALYNISKVARGEILPYFNEIFD 71 (97)
T ss_pred HHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777676 889999999999887653322234445566643
No 178
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=52.41 E-value=1.8e+02 Score=26.40 Aligned_cols=79 Identities=8% Similarity=-0.074 Sum_probs=60.9
Q ss_pred cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 173 GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 173 ~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
.++.+.+--..++.....|...||+..|-..+.++... |.+ +..++.+....++.....+||..+-.+...+-.
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~----~~~--~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY----CTS--PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh----cCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555566677788888999999999999888886554 223 567888888889999999999998888777766
Q ss_pred CCCCC
Q psy292 253 TPCIQ 257 (452)
Q Consensus 253 t~~~~ 257 (452)
++...
T Consensus 102 ~~~~~ 106 (177)
T PF10602_consen 102 LIEKG 106 (177)
T ss_pred HHhcc
Confidence 55443
No 179
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.01 E-value=46 Score=26.84 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=31.0
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQIC 72 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~ 72 (452)
..+.-|..+...|+.++|++.|+.+-+..|.-.|+. .++.+..+..++
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~-ar~~ll~~f~~l 71 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDA-ARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccH-HHHHHHHHHHHc
Confidence 355667777788889999999999887776554433 455555555544
No 180
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=51.35 E-value=83 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=25.8
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcC
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSK 394 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~ 394 (452)
||.+.||+.||+|..-|...+..+-..|
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999998888
No 181
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=51.20 E-value=41 Score=29.93 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHHhhcc--ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEE
Q psy292 355 HNIRVMAKYYT--RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407 (452)
Q Consensus 355 hNi~~isk~Ys--~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV 407 (452)
|-|.-++.... -++.+.||+..|+|+..+++.++.+...|-+...==...|+.
T Consensus 12 ~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~ 66 (150)
T COG1959 12 RALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYR 66 (150)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCcc
Confidence 44445554433 689999999999999999999999999998877655555554
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=50.71 E-value=1.3e+02 Score=26.43 Aligned_cols=90 Identities=9% Similarity=-0.014 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHH
Q psy292 155 GDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELD 234 (452)
Q Consensus 155 gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~ 234 (452)
+++..+...|..+. +..+...+...++....++...+++..|....+++.... ..+ .+ ...-+...|..+
T Consensus 13 ~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~----~~-~~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRIL----PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDP----YD-RSYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhc----cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccc----hh-hHHHHHHHHHHH
Confidence 34566666665432 344556788888899999999999999999999887653 111 11 112234468899
Q ss_pred HHhhhHHHHHHHHHHHHcCC
Q psy292 235 QHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 235 ~~~~df~ea~~~y~e~~~t~ 254 (452)
...++|-+|-.+|..++...
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERN 102 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999987653
No 183
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=50.49 E-value=43 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=18.2
Q ss_pred hCCChHHHHHHHHhhhhcCcEEEE
Q psy292 376 LGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 376 l~ls~~evE~~ls~mI~~~~l~ak 399 (452)
.+.|.++++..|.++|.+|+|.+.
T Consensus 31 ~~~s~~eL~~fL~~lv~e~~L~~~ 54 (60)
T PF08672_consen 31 YDISLEELQEFLDRLVEEGKLECS 54 (60)
T ss_dssp TT--HHHHHHHHHHHHHTTSEE--
T ss_pred CCCCHHHHHHHHHHHHHCCcEEec
Confidence 456789999999999999999764
No 184
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=50.37 E-value=24 Score=30.28 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=34.7
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++...||+.+|+|+..+.+.+..|...|-+.+.-....|
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~gg 64 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGG 64 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCC
Confidence 46899999999999999999999999999998775333334
No 185
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=50.36 E-value=29 Score=22.46 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLT 89 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~ 89 (452)
++..|+.+|++.|+|+...+.+....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999998876533
No 186
>KOG2002|consensus
Probab=49.72 E-value=4.8e+02 Score=30.37 Aligned_cols=286 Identities=12% Similarity=0.017 Sum_probs=153.5
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-----------hhhhHHH
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK-----------RRSQLKQ 97 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~-----------~~~q~k~ 97 (452)
|.-..-.|+.+.+........+.+- ++ .-....+.++++-+...|++++...++..-.+ .-||+.-
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~--~~-~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTE--NK-SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 4445566677777776666665542 22 22346788888888888888888877665443 1233321
Q ss_pred H---HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhh--------cCcchHH------HHHHHHHHHHHHHHHhcCCHHHH
Q psy292 98 A---VVKMIQECVTYVDKTPSKEIKVKLIETLRTVT--------EGKIYVE------VERARLTHILAKMKEDEGDVTEA 160 (452)
Q Consensus 98 a---v~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~--------e~ki~lE------~er~~l~~~La~i~e~~gd~~eA 160 (452)
. ....+..+-..+...|+.-.-++++-+|-+-. ..+..+. ....+.-+.||.+|+...-|..
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-
Confidence 1 11123333333444555433333333331111 0111110 1122344667888887655544
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCC---chHHHHHHHHHHHHHHHHHh
Q psy292 161 ANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD---DVQELKLKYYRLMIELDQHE 237 (452)
Q Consensus 161 ~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~---~~~~lk~~~~~~~~~~~~~~ 237 (452)
+..+....-.-...+.. -=.|.+--+.-+++..|++..|..+..++..+.....+. ....+-+.|-. ++...+-
T Consensus 433 L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl--arl~E~l 509 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL--ARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH--HHHHHhh
Confidence 66666544111111111 223455567888999999999999999888763211110 00334456665 8888999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHH-HhcCCcccC
Q psy292 238 GSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQ-WFTNPELIK 316 (452)
Q Consensus 238 ~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~-~f~~~~Li~ 316 (452)
.+|-.|...|-++..-.+ -.+.|.-...-.+......++-+.+++.... .....|.-..|+- .|..+.-
T Consensus 510 ~~~~~A~e~Yk~Ilkehp------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~-- 579 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHP------GYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSE-- 579 (1018)
T ss_pred hhhhHHHHHHHHHHHHCc------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhh--
Confidence 999999999999965432 2333332232222233444566666665553 1234455555544 6666643
Q ss_pred chhHHHHHHHHhccC
Q psy292 317 WSGLRQLYEEELFKT 331 (452)
Q Consensus 317 ~~~~~~~~~~~L~~~ 331 (452)
|....+.|+.+++..
T Consensus 580 ~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKT 594 (1018)
T ss_pred hcccccHHHHHHhhh
Confidence 433335666666543
No 187
>PRK11189 lipoprotein NlpI; Provisional
Probab=49.72 E-value=2.6e+02 Score=27.39 Aligned_cols=101 Identities=11% Similarity=-0.114 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.++..-..++.++...|++.+|...++....- ++ .-.+.+.....++...+++..|....+++...- ++.
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~~- 131 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL-----RP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD---PTY- 131 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC-
Confidence 45666677788999999999999887764421 11 124677777888999999999998888887553 332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.. . +...|..+...++|-+|...|..++...
T Consensus 132 -~~--a--~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 132 -NY--A--YLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred -HH--H--HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11 1 2234666677888999988888887643
No 188
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=49.49 E-value=1.1e+02 Score=25.51 Aligned_cols=63 Identities=10% Similarity=-0.157 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
....++..+...|++++|...++....- . ..-.+.++....++...|++.+|....+++....
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAAL--D----PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--C----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3356688999999999999999875421 1 1235666777788999999999999998887764
No 189
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=49.46 E-value=30 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=29.6
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.++-+.||+.+|+|...+-+.+..|..+|-|.
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~ 59 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIE 59 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46789999999999999999999999999776
No 190
>KOG2908|consensus
Probab=49.25 E-value=3.1e+02 Score=28.05 Aligned_cols=119 Identities=9% Similarity=0.159 Sum_probs=73.3
Q ss_pred HHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH-HHhhcCcchHHHHHHHHHHHHHHHHHhcCC
Q psy292 79 TALNEH-ITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETL-RTVTEGKIYVEVERARLTHILAKMKEDEGD 156 (452)
Q Consensus 79 ~~l~~~-~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L-~~~~e~ki~lE~er~~l~~~La~i~e~~gd 156 (452)
+.+.+. ...++.+.+++.+- +.|.-++....++.|.+.-+++.+.+ +.+.+-+.=. ....+....|.++...||
T Consensus 55 ~~~l~lY~NFvsefe~kINpl--slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~--av~~~~t~~~r~~L~i~D 130 (380)
T KOG2908|consen 55 DLLLQLYLNFVSEFETKINPL--SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPD--AVIYILTEIARLKLEIND 130 (380)
T ss_pred hHHHHHHHHHHHHHhhccChH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHhccc
Confidence 445553 34455555555221 34555555555666665555655533 3333333211 233344455666679999
Q ss_pred HHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHhhccChHHHH
Q psy292 157 VTEAANIIQELQVET--YGSMEKKEKVTLILEQMRLCLAKKDYIRTQ 201 (452)
Q Consensus 157 ~~eA~~iL~~l~~Et--~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~ 201 (452)
..++-++|.+..... ...++..-...|+..-+++|-..+|+....
T Consensus 131 Lk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 131 LKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 999999999987533 256677677889999999998888887543
No 191
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=49.12 E-value=41 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
-..++.++...|++++|.+.++...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3567888888888888888777643
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=48.97 E-value=2.7e+02 Score=29.54 Aligned_cols=89 Identities=11% Similarity=0.162 Sum_probs=62.7
Q ss_pred hcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH-HHHHHHH
Q psy292 153 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL-KYYRLMI 231 (452)
Q Consensus 153 ~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~-~~~~~~~ 231 (452)
..++...|-++|..... .|. . =.=+.+...|++...+|...|-...+++...- .. ..+++. -|++ .+
T Consensus 245 ~~~~~~~a~~lL~~~~~-~yP---~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---~~--~~Ql~~l~~~E-l~ 312 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLK-RYP---N--SALFLFFEGRLERLKGNLEEAIESFERAIESQ---SE--WKQLHHLCYFE-LA 312 (468)
T ss_pred cCCCHHHHHHHHHHHHH-hCC---C--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch---hh--HHhHHHHHHHH-HH
Confidence 35688889999988763 231 1 12367888999999999999999888765321 10 123333 2333 46
Q ss_pred HHHHHhhhHHHHHHHHHHHHcC
Q psy292 232 ELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 232 ~~~~~~~df~ea~~~y~e~~~t 253 (452)
-.+....+|.+|+.+|..+.+.
T Consensus 313 w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 313 WCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHchHHHHHHHHHHHHhc
Confidence 6788999999999999999764
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=48.90 E-value=2.8e+02 Score=27.43 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK--DYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~--d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-...++...|.++.|.+.+..++ .+++..-+ ..|-++-+.+..| .+..|.-++.-...++ +.. +.+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~-----~~~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~~---~~t--~~~ 203 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQ-----QIDEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDKF---GST--PKL 203 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH-----CCSCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----S--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-----hcCCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhcc---CCC--HHH
Confidence 445688999999999999998764 23333222 3344444555544 5778877777665553 222 333
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCC-hhhhHhHHhhhhhhccCCchH
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYD-NEQSDLTHRVLEDKLLNEIPL 301 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~-~~~~~ll~~~~~~~~~~~ip~ 301 (452)
...++..+.+.++|-+|-..+.++++...- + + .+|-+.+.|..+.+-+ ..-.+.+..+... .|+-|+
T Consensus 204 ----lng~A~~~l~~~~~~eAe~~L~~al~~~~~--~-~---d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~ 271 (290)
T PF04733_consen 204 ----LNGLAVCHLQLGHYEEAEELLEEALEKDPN--D-P---DTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPL 271 (290)
T ss_dssp ----HHHHHHHHHHCT-HHHHHHHHHHHCCC-CC--H-H---HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHH
T ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHHHhccC--C-H---HHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChH
Confidence 345688999999999999999999764321 2 2 3566777777777655 4556677776642 244445
Q ss_pred HHHH
Q psy292 302 YKGL 305 (452)
Q Consensus 302 ~~~L 305 (452)
...+
T Consensus 272 ~~~~ 275 (290)
T PF04733_consen 272 VKDL 275 (290)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 194
>KOG1061|consensus
Probab=48.60 E-value=4.4e+02 Score=29.66 Aligned_cols=176 Identities=15% Similarity=0.235 Sum_probs=98.1
Q ss_pred HHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhh
Q psy292 31 KMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEH-ITMLTKRRSQLKQAVVKMIQECVTY 109 (452)
Q Consensus 31 ~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~-~~~l~~~~~q~k~av~~~v~~~~~~ 109 (452)
.++...++.+.+..|.+-+- .-|.+-..+++..|.++-.+..+|....+. +.++..+-.+..+.+...|+.+.-+
T Consensus 341 ~la~~~nl~qvl~El~eYat----evD~~fvrkaIraig~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 341 ELANDANLAQVLAELKEYAT----EVDVDFVRKAVRAIGRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred HHhhHhHHHHHHHHHHHhhh----hhCHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 34444446665555555322 246676788999999999998888555443 3333334445555555666666666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q psy292 110 VDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMR 189 (452)
Q Consensus 110 ~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~r 189 (452)
.++.++ ..-..++..+..+++-.. |+.+.=.+.++= ..++.|.++|+... |++..-+..-+++++-..+|
T Consensus 417 yP~~~~-~vv~~l~~~~~sl~epea-----k~amiWilg~y~---~~i~~a~elL~~f~-en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 417 YPNKYE-SVVAILCENLDSLQEPEA-----KAALIWILGEYA---ERIENALELLESFL-ENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred CCCchh-hhhhhhcccccccCChHH-----HHHHHHHHhhhh---hccCcHHHHHHHHH-hhcccchHHHHHHHHHHHHH
Confidence 655442 222233334444444221 333322333332 35677777777665 55544444456666666788
Q ss_pred HHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 190 LCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 190 l~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
+++..-+ ..+.....+.+.-..+.++ +|++=
T Consensus 487 ~Fl~~p~--~tq~~l~~vL~~~~~d~~~--~dlrD 517 (734)
T KOG1061|consen 487 LFLKKPT--ETQELLQGVLPLATADTDN--PDLRD 517 (734)
T ss_pred HHhcCCc--cHHHHHHHHHhhhhccccC--hhhhh
Confidence 8887766 5555666665544444433 45544
No 195
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=48.49 E-value=1.4e+02 Score=25.35 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=49.7
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHH-----HHHHHHHHHHHHHHHHH
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILN-----EWSASLNELMKLVNNTT 437 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~-----~W~~~i~~ll~~v~k~~ 437 (452)
..+...|++.+|+|+.-+-+.|..|...|-+...-+-.. +.|.-..+..+.+. .|..+.+.+-..+++++
T Consensus 30 ~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~--~~Y~l~~~~~~~~~~~~~~~w~~~~~~l~~~l~~l~ 104 (117)
T PRK10141 30 ELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKW--VHYRLSPHIPAWAAKIIEQAWLCEQEDVQAIVRNLA 104 (117)
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCE--EEEEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588899999999999999999999999999988665332 33332222222222 37777777777776654
No 196
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=48.08 E-value=29 Score=31.40 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=37.0
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV 407 (452)
..++.+.||+.+|+|+..+++.+..|...|-+...=-...|+.
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~ 66 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYL 66 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCee
Confidence 4699999999999999999999999999999987545555543
No 197
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=47.84 E-value=3.2e+02 Score=27.79 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
...+|..|...|++++|...++.... ... .-...++....+++..|++..|...++++...- +++ .+..
T Consensus 39 ~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P-----~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~---P~~--~~~~ 107 (356)
T PLN03088 39 YADRAQANIKLGNFTEAVADANKAIE-LDP-----SLAKAYLRKGTACMKLEEYQTAKAALEKGASLA---PGD--SRFT 107 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCc-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC--HHHH
Confidence 35668888999999999999887642 111 123457777888999999999999999887654 343 4554
Q ss_pred HHHHHHHHH
Q psy292 224 LKYYRLMIE 232 (452)
Q Consensus 224 ~~~~~~~~~ 232 (452)
.....+...
T Consensus 108 ~~l~~~~~k 116 (356)
T PLN03088 108 KLIKECDEK 116 (356)
T ss_pred HHHHHHHHH
Confidence 444333333
No 198
>PLN03077 Protein ECB2; Provisional
Probab=47.00 E-value=4.9e+02 Score=29.72 Aligned_cols=165 Identities=9% Similarity=0.090 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCCh--hhhHhHHhhhhhhc-cCCchHHH
Q psy292 227 YRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDN--EQSDLTHRVLEDKL-LNEIPLYK 303 (452)
Q Consensus 227 ~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~--~~~~ll~~~~~~~~-~~~ip~~~ 303 (452)
|..++.-+...++.-+|...|.+..+..... | ..+ +. .++.+ .+-.+. +=..++....++.. .+.+..|.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d---~~T-~~-~ll~a-~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNP-D---EVT-FI-SLLCA-CSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C---ccc-HH-HHHHH-HhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 4556777778888999999999886542221 2 111 11 12222 222221 22334444442222 36667888
Q ss_pred HHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHH----------hhccc---eeHH
Q psy292 304 GLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMA----------KYYTR---ITLQ 370 (452)
Q Consensus 304 ~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~is----------k~Ys~---Itl~ 370 (452)
.+++.|-... ++.+....++.. ++- ++ ...|..|..+..-|+=..+. .|-.. +.+.
T Consensus 630 ~lv~~l~r~G--~~~eA~~~~~~m----~~~----pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 630 CVVDLLGRAG--KLTEAYNFINKM----PIT----PD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHC----CCC----CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 8889886543 233332333221 211 11 12466666555443211111 11111 1122
Q ss_pred HHHHHhCCChHHHHHHHHhhhhcCcE----EEEeccCCcEEEec
Q psy292 371 RMCDLLGLPIEETEEFLSSMVVSKTI----TAKIDRPAGIINFA 410 (452)
Q Consensus 371 ~La~ll~ls~~evE~~ls~mI~~~~l----~akIDq~~giV~f~ 410 (452)
.+=...| ..+++++....|...|-- ...|.-.+.+=.|.
T Consensus 699 n~ya~~g-~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 699 NLYADAG-KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHCC-ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 2211122 257888999999888743 22455444444553
No 199
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=46.95 E-value=1.1e+02 Score=28.03 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=46.3
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEe--ccCCcEEEeccCCChhHHHHHHHHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKI--DRPAGIINFARNKDPGEILNEWSASLNELMK 431 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akI--Dq~~giV~f~~~~~~~~~l~~W~~~i~~ll~ 431 (452)
.-+|-+.||+.||++..+|-+.|..|-.+|.+..+- |...|...+-|.-+.......-...+..+..
T Consensus 35 g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~i~d~ik~~~~~~~~ 103 (178)
T PRK06266 35 GEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEKLPEIIKKKKMEELK 103 (178)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999886433 2245666665554444444333444444433
No 200
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=46.77 E-value=55 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.2
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
...++..|++.+|+|...+-..|..|...|-+.
T Consensus 14 ~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 14 GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 678899999999999999999999999998663
No 201
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.48 E-value=3e+02 Score=27.08 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=94.8
Q ss_pred HHHHHHHhhhcCCCC-HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHH
Q psy292 101 KMIQECVTYVDKTPS-KEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE 179 (452)
Q Consensus 101 ~~v~~~~~~~~~~~~-~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~ 179 (452)
.+++.--..++.+++ .+.+..++. ++...-+.+.+..+.+..-.+.|++..+.|.+.-|...|..+.. +.......
T Consensus 106 ~l~~~W~~Rl~~~~~~~~~~~~il~-~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~--~~~~~~~~ 182 (352)
T PF02259_consen 106 SLLKRWRSRLPNMQDDFSVWEPILS-LRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQ--LNPSSESL 182 (352)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHH-HHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc--cCCcccCC
Confidence 344444444443333 244444432 23333333344567778889999999999999999999987653 12111122
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHhhh-hhccC------------------------CCCchHHHHHHHHHHHHHHH
Q psy292 180 KVTLILEQMRLCLAKKDYIRTQIISKKINT-KFFDD------------------------EKDDVQELKLKYYRLMIELD 234 (452)
Q Consensus 180 k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~-~~~~~------------------------~~~~~~~lk~~~~~~~~~~~ 234 (452)
...+.++.+++.-..|+...|-..++.... ..-.. .+......+.+.+...|.|.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 667889999999999998877655544433 11100 01111466677888889998
Q ss_pred HHh------hhHHHHHHHHHHHHcC
Q psy292 235 QHE------GSYLATCKHYRAILTT 253 (452)
Q Consensus 235 ~~~------~df~ea~~~y~e~~~t 253 (452)
... .++.++.+.|.++...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKL 287 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHh
Confidence 888 8888899999988654
No 202
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=46.26 E-value=71 Score=23.65 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=30.3
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
-=..|+...||+.||+++.-|=..+.+|...|-+.
T Consensus 19 ~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp CTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 35789999999999999999999999999988764
No 203
>KOG1585|consensus
Probab=45.74 E-value=3e+02 Score=26.97 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHH
Q psy292 148 AKMKEDEGDVTEAANIIQELQVETY-GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY 226 (452)
Q Consensus 148 a~i~e~~gd~~eA~~iL~~l~~Et~-~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~ 226 (452)
|--..+.-+.++|.++.+.-.. .+ ..-..+.-.+++=...|++...+-+..|.....|-.....+.+.- .-.-+-
T Consensus 117 Aak~lenv~Pd~AlqlYqrala-vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y---~~~~k~ 192 (308)
T KOG1585|consen 117 AAKALENVKPDDALQLYQRALA-VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY---NSQCKA 192 (308)
T ss_pred HHHHhhcCCHHHHHHHHHHHHH-HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc---ccHHHH
Confidence 3333445566667666665321 11 111223344455555777777777777766555544333222111 112334
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhh
Q psy292 227 YRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDK 294 (452)
Q Consensus 227 ~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~ 294 (452)
+.-.+..|.+..||..|=++|.+.+..|... ++++. .+|.+ +|..++..-.+..+++...|
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~-~sed~-r~len-----LL~ayd~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFL-KSEDS-RSLEN-----LLTAYDEGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCcccc-ChHHH-HHHHH-----HHHHhccCCHHHHHHHHcCh
Confidence 5666788899999999999999999888775 33332 23443 34455544444445555443
No 204
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=45.69 E-value=57 Score=29.06 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=35.1
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
.++.+.||+..++|+..+++.+..|...|-+...==...|+
T Consensus 24 ~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy 64 (153)
T PRK11920 24 LSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGV 64 (153)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCe
Confidence 48999999999999999999999999999887665444444
No 205
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=45.60 E-value=68 Score=26.03 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=39.3
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
.-..+|-+.||+++|++.+-|-+.|.+|...|-|. .++..|.|..+.
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~--r~~~~~~~~~n~ 90 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIF--RQGMMGIVGVNT 90 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCee--eecCCceeecCC
Confidence 46788999999999999999999999999999886 345567666553
No 206
>KOG2300|consensus
Probab=45.39 E-value=4.2e+02 Score=28.52 Aligned_cols=119 Identities=15% Similarity=0.059 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhccCcch--HHHHHHHHHHHHHHhhcc-C
Q psy292 121 KLIETLRTVTEGKIYVEVERARLTHILAKMKED-EGDVTEAANIIQELQVETYGSMEK--KEKVTLILEQMRLCLAKK-D 196 (452)
Q Consensus 121 ~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~-~gd~~eA~~iL~~l~~Et~~~~~~--~~k~e~~Le~~rl~l~~~-d 196 (452)
+-|+++..+..-.|.+++| ++..++|+.++.. ..+++-|..=|+.--. ..++++. +-|.+.+=.-+.+|+... .
T Consensus 27 k~IkClqA~~~~~is~~ve-art~LqLg~lL~~yT~N~elAksHLekA~~-i~~~ip~fydvKf~a~SlLa~lh~~~~~s 104 (629)
T KOG2300|consen 27 KCIKCLQAIFQFQISFLVE-ARTHLQLGALLLRYTKNVELAKSHLEKAWL-ISKSIPSFYDVKFQAASLLAHLHHQLAQS 104 (629)
T ss_pred HHHHHHHHHhccCChHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHcccccHHhhhhHHHHHHHHHHHHhcCC
Confidence 4566777777777877654 5666778877654 3455555555543221 1233333 356666666778888776 8
Q ss_pred hHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy292 197 YIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKH 246 (452)
Q Consensus 197 ~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~ 246 (452)
++.++.+++|+....-..+ - |--|+-|.. +.++..++||-.|+..
T Consensus 105 ~~~~KalLrkaielsq~~p-~--wsckllfQL--aql~~idkD~~sA~el 149 (629)
T KOG2300|consen 105 FPPAKALLRKAIELSQSVP-Y--WSCKLLFQL--AQLHIIDKDFPSALEL 149 (629)
T ss_pred CchHHHHHHHHHHHhcCCc-h--hhHHHHHHH--HHHHhhhccchhHHHH
Confidence 9999999999987762323 2 666776655 9999999999999887
No 207
>KOG0548|consensus
Probab=44.98 E-value=4.3e+02 Score=28.52 Aligned_cols=93 Identities=17% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHH
Q psy292 147 LAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY 226 (452)
Q Consensus 147 La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~ 226 (452)
-..-++..|||.+|..-+.+.- +.-++. ...|=-.+-.|+..++++.|-.-.+++..+ .+. -.|.
T Consensus 364 kGne~Fk~gdy~~Av~~YteAI----kr~P~D--a~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~----~~kg-- 428 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAI----KRDPED--ARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPN----FIKA-- 428 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHH----hcCCch--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---Cch----HHHH--
Confidence 3778889999999999998732 111111 123444455677888888777666666554 122 2344
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 227 YRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 227 ~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
|...|..+-+-++|-.|...|.+.++-.
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444888899999999999999997654
No 208
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.90 E-value=2.9e+02 Score=26.46 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhh
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKR 91 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~ 91 (452)
-+..+++++-+.++|+.|.+.+..+...
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~ 30 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEM 30 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHcc
Confidence 4678999999999999998888777753
No 209
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=44.54 E-value=2.1e+02 Score=24.75 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=62.4
Q ss_pred CcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCH
Q psy292 37 KFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSK 116 (452)
Q Consensus 37 ~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~ 116 (452)
||.=|.+-|..+-... + ..+....+....---..+|.+..|++...--..-+...|+.++.+..+++|.
T Consensus 4 Np~IA~~~l~~l~~s~----~-------~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~ 72 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP----N-------FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDK 72 (126)
T ss_pred cHHHHHHHHHHHcCCc----h-------HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhccc
Confidence 3555666555544311 1 3444555555555555667777777643222455677899999999888876
Q ss_pred HHHHHHHH----HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy292 117 EIKVKLIE----TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 117 ~~~~~l~~----~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l 167 (452)
..+.+.+. -+......++.. -..+...+-.+-.+-.++.||+.+.+-+
T Consensus 73 ~~q~R~VRlvcvfl~sLir~~i~~---~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 73 YMQNRLVRLVCVFLQSLIRNKIID---VEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred ccccchhhhHHHHHHHHHHcCCCc---hHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 44433322 333333333322 1223333333444444577888776643
No 210
>PHA02943 hypothetical protein; Provisional
Probab=44.41 E-value=1.5e+02 Score=26.67 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=55.5
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHH-------HHH
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLV-------NNT 436 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v-------~k~ 436 (452)
.-.-|.++||+.+|+|-.+|+-.|--+=.+|.+.- +-++.-.+.+-.++.....+.+.-..+-.++..- -..
T Consensus 22 ~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~Vkr-V~~G~~tyw~l~~day~~~v~~~~Relwrlv~s~~~kfi~p~~l 100 (165)
T PHA02943 22 DGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLK-VEIGRAAIWCLDEDAYTNLVFEIKRELWRLVCNSRLKFITPSRL 100 (165)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEE-EeecceEEEEEChHHHHHHHHHHHHHHHHHHHhccccccChHHH
Confidence 66678999999999999999999999999998865 4466555655554322222333332222222111 124
Q ss_pred HhhHhHHHHhchhh
Q psy292 437 THLINKEQMIHQRV 450 (452)
Q Consensus 437 ~~lI~ke~~~~~~~ 450 (452)
-++|.|+.-+|++.
T Consensus 101 ~~li~kd~~a~~~~ 114 (165)
T PHA02943 101 LRLIAKDTEAHNIF 114 (165)
T ss_pred HHHHHhCHHHHHHH
Confidence 56788887777654
No 211
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.20 E-value=87 Score=24.88 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=45.7
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEH 84 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~ 84 (452)
..+++--++..+.+..+|+..... |+|.++ ++| -|+++-.+.+.+.+.|++..++++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~---rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITD-RED---RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666678888888999999988 666554 333 789999999999999999999775
No 212
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=43.99 E-value=6e+02 Score=29.91 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=108.1
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh--------------
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR-------------- 91 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~-------------- 91 (452)
+..+..+.+.|++++|+..+..+.... .+. ......+.++.+.|+++.....+....+.
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~---p~~----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHD---MSN----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccC---CCc----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 444555567888899988877654321 111 12345567777788887766655433321
Q ss_pred h---hhHHHHHHHHHHHHHhhhcCCCCHHHHHHH----------------HHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Q psy292 92 R---SQLKQAVVKMIQECVTYVDKTPSKEIKVKL----------------IETLRTVTEGKIYVEVERARLTHILAKMKE 152 (452)
Q Consensus 92 ~---~q~k~av~~~v~~~~~~~~~~~~~~~~~~l----------------~~~L~~~~e~ki~lE~er~~l~~~La~i~e 152 (452)
. |+...|+. ..+.++. .-|+.+....+ ++......++ .......|+..+.
T Consensus 586 l~~~Gr~~eAl~-~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-------~~~a~~nLG~aL~ 654 (987)
T PRK09782 586 RYIPGQPELALN-DLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-------NSNYQAALGYALW 654 (987)
T ss_pred HHhCCCHHHHHH-HHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Confidence 1 33322221 1222222 22332222222 2211112222 1235567888999
Q ss_pred hcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHH
Q psy292 153 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 232 (452)
Q Consensus 153 ~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~ 232 (452)
..|++++|...++....- .. .-.+++.....++...||+..|...++++...- ++. .+.+. ..+.
T Consensus 655 ~~G~~eeAi~~l~~AL~l-~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~---P~~--a~i~~----~~g~ 719 (987)
T PRK09782 655 DSGDIAQSREMLERAHKG-LP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI---DNQ--ALITP----LTPE 719 (987)
T ss_pred HCCCHHHHHHHHHHHHHh-CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCC--chhhh----hhhH
Confidence 999999999999876531 11 123667777888999999999999999997654 222 22322 2255
Q ss_pred HHHHhhhHHHHHHHHHHH
Q psy292 233 LDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 233 ~~~~~~df~ea~~~y~e~ 250 (452)
+.....+|-.|-+.|.-.
T Consensus 720 ~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 720 QNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666666655544
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=43.90 E-value=2.3e+02 Score=25.07 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 147 LAKMKEDEGDVTEAANIIQELQVETY--GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 147 La~i~e~~gd~~eA~~iL~~l~~Et~--~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
-|.-..+.|+|.+|.+.++.|.. .+ |.... ...|..+-.|+..++++.|...+.+-..+-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~-ryP~g~ya~----qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDT-RYPFGEYAE----QAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-cCCCCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 36667788999999999999752 22 43333 456777888999999999988888765554
No 214
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=42.82 E-value=1.2e+02 Score=26.39 Aligned_cols=34 Identities=3% Similarity=0.082 Sum_probs=30.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
-..++++.||+.+++++.-|=..|.+|...|-|.
T Consensus 20 ~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~ 53 (142)
T PRK03902 20 KGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_pred CCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 4556889999999999999999999999999876
No 215
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=42.67 E-value=1.2e+02 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=34.5
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
....|.+.||+.+|+|...|-..|..|...|-+.-.-.+
T Consensus 20 ~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 20 NGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 778999999999999999999999999999988654433
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=42.35 E-value=1e+02 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=41.9
Q ss_pred HHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 189 RLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 189 rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.+|+..+||..|...+.++.... |++ + .. +...|..+...++|-+|...|..++.-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~--~--~~--~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDD--P--EL--WLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---ccc--c--hh--hHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999988887664 222 2 22 233488888999999999988888754
No 217
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=41.94 E-value=2.6e+02 Score=25.16 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
-.+|-.+...|++++|.++.+-+-. + +..-.++++--.-++-..++|..|-..+.++...-.+.+ ..
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-------~~ 105 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--Y----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-------QA 105 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--h----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-------hH
Confidence 5678888999999999999987643 1 234456777777778889999999999998877653333 23
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. .+.|.-+..-++.-.|-+.|..++..
T Consensus 106 ~--~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 106 P--WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 33477778888888888888877544
No 218
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=41.71 E-value=99 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.5
Q ss_pred hhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 362 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 362 k~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
++=+++ +...||+.+|+|..-+-+.+..+..+|.+.-
T Consensus 19 ~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 19 PPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp -TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred CCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEE
Confidence 344689 9999999999999999999999999997754
No 219
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=41.56 E-value=92 Score=22.83 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=31.7
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
.....++...||+.++++...+-+.|.+|+..|-+.=.=|.
T Consensus 14 ~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~ 54 (68)
T PF13463_consen 14 HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDP 54 (68)
T ss_dssp --TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEES
T ss_pred ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC
Confidence 46789999999999999999999999999999988544333
No 220
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=41.53 E-value=92 Score=22.75 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=32.5
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
......++..||+.+|+|+.-+-..|..|...|-|..
T Consensus 20 ~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 20 ASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEE
Confidence 4478899999999999999999999999999997754
No 221
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=40.88 E-value=1.9e+02 Score=24.90 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=37.0
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
.++.+.||+.++++..-+=..+.+|...|-+.-.-|..++-
T Consensus 46 ~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR 86 (144)
T PRK03573 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRR 86 (144)
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcC
Confidence 47889999999999999999999999999998888877763
No 222
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=40.78 E-value=40 Score=27.96 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=33.2
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
|...+|+.+.++++.|++++.|.+.+..+|..|-|
T Consensus 50 Kk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 50 KKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVI 84 (100)
T ss_pred CccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 56789999999999999999999999999999988
No 223
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=40.75 E-value=66 Score=28.01 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=35.9
Q ss_pred HhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE---EEEecc
Q psy292 361 AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI---TAKIDR 402 (452)
Q Consensus 361 sk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l---~akIDq 402 (452)
-+.=.++++..||+.+|+|+..+-.-+-+|..+|-| .+.+|.
T Consensus 17 L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 17 LQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred HHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 333455999999999999999999999999999966 567886
No 224
>KOG1129|consensus
Probab=40.46 E-value=1e+02 Score=31.37 Aligned_cols=58 Identities=21% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
.-|++.|-+..+...|+.++.+.. |. --.-+.+.+.++|++-+.++...|-.+++.+.
T Consensus 260 llLskvY~ridQP~~AL~~~~~gl-d~-----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 260 LLLSKVYQRIDQPERALLVIGEGL-DS-----FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHhhhh-hc-----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 567999999999999998887532 22 23678899999999999999999988888774
No 225
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=40.20 E-value=1.1e+02 Score=26.59 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=40.1
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
..++.+.||+.+|+|+..+.+.+..+...|-+..+=-...|+.....
T Consensus 24 ~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~ 70 (141)
T PRK11014 24 RMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKP 70 (141)
T ss_pred CccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCC
Confidence 46899999999999999999999999999988877666677755443
No 226
>KOG0543|consensus
Probab=39.65 E-value=2.7e+02 Score=28.94 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-c-cCcch-------HHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhc
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVET-Y-GSMEK-------KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFF 212 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et-~-~~~~~-------~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~ 212 (452)
.....-.+.|.+.|+|..|...+......- + .+.++ ..|+-.+|-.+-.|+..++|..|....+++...
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 344555778899999999988866533222 2 22222 245666677788899999999888887776543
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 213 DDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 213 ~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+..+ -|.-|.. |+-+..-++|-.|-.-|..+..-.
T Consensus 287 ~~~N-----~KALyRr--G~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 DPNN-----VKALYRR--GQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred CCCc-----hhHHHHH--HHHHHhhccHHHHHHHHHHHHHhC
Confidence 2222 3777776 888888888888888887775543
No 227
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.13 E-value=1.1e+02 Score=26.56 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=48.7
Q ss_pred HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHH
Q psy292 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNEL 429 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~l 429 (452)
+.+-=-++|+..+...+|++-.-+...+.++|..|.|+- .+. .=.|.+ ..+..+|.+.-.++
T Consensus 20 lVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~---~G~-~GvF~s----eqA~~dw~~~~~~~ 81 (127)
T PF06163_consen 20 LVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLYR---HGR-SGVFPS----EQARKDWDKARKKL 81 (127)
T ss_pred HHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEe---CCC-cccccc----HHHHHHHHHhHHhh
Confidence 556678999999999999999999999999999998864 222 123432 35788898887776
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=38.13 E-value=3.2e+02 Score=25.09 Aligned_cols=168 Identities=14% Similarity=0.140 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHH
Q psy292 60 STGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVE 139 (452)
Q Consensus 60 ~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~e 139 (452)
++-+.+...+.-++..|+|+.-.+.+..+..+. |+ .-+.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~---------------------P~-----------------s~~a--- 41 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRY---------------------PN-----------------SPYA--- 41 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH----------------------TT-----------------STTH---
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------CC-----------------ChHH---
Confidence 344678888888999999998877777666532 21 1111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh------ccChH---HHHHHHHHhhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLA------KKDYI---RTQIISKKINTK 210 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~------~~d~~---~a~~~~~K~~~~ 210 (452)
......+|..+...|++.+|...++.... .+..-+...-+-+++-.+-.... ..|.. +|.........+
T Consensus 42 -~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 42 -PQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence 22345678899999999999999998763 34332222222222222211111 22222 333344443333
Q ss_pred hccCCCCc-----hHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q psy292 211 FFDDEKDD-----VQELKL---KYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLY 273 (452)
Q Consensus 211 ~~~~~~~~-----~~~lk~---~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~ 273 (452)
+.+.+-.. ..+++. +.....++++...+.|..|..+|..++..+.- ++..-.+|..++-+
T Consensus 120 yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~---t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD---TPAAEEALARLAEA 187 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT---SHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHH
Confidence 32111100 112222 22344588999999999999999999988653 23333345444433
No 229
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.65 E-value=2.3e+02 Score=27.90 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=16.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q psy292 148 AKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 148 a~i~e~~gd~~eA~~iL~~l~ 168 (452)
.+-..+.|||.+|.+++.+.+
T Consensus 134 l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 134 LQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 445568899999999998755
No 230
>KOG1586|consensus
Probab=37.55 E-value=4e+02 Score=25.99 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=95.9
Q ss_pred HHHHHhccCHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHhhhc-CCCCHHHHHHHHHHH--HHhhcCcchHHHHHHH
Q psy292 69 VQICFEAKNWTALNEHIT---MLTKRRSQLKQAVVKMIQECVTYVD-KTPSKEIKVKLIETL--RTVTEGKIYVEVERAR 142 (452)
Q Consensus 69 ~~l~~~~~~~~~l~~~~~---~l~~~~~q~k~av~~~v~~~~~~~~-~~~~~~~~~~l~~~L--~~~~e~ki~lE~er~~ 142 (452)
.--||+..+.....+.+. .+-..||++..+- +.=..+-+++. .++|.+.-+.-++.= |-..+..... -..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aA-k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss---ANK 155 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAA-KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS---ANK 155 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHH-hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh---HHH
Confidence 444677667766655433 3345777775321 22222333332 234444444444422 1111111111 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchH---HHHHHHHHHHHHHhhc-cChHHHHHHHHHhhhhhccCCCCc
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKK---EKVTLILEQMRLCLAK-KDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~---~k~e~~Le~~rl~l~~-~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
+-++.|.+-...|+|.+|.++.+++..- +|+.. .-+.=+|-..-||+.. .|.+.++..+.|=......=.+.
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~---s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds- 231 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARS---SLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS- 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc-
Confidence 6678899999999999999999988753 33332 2333455566666666 88887776666554332110222
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
-+-|+-=..+.+.--.....|-++++.|..+
T Consensus 232 -REckflk~L~~aieE~d~e~fte~vkefDsi 262 (288)
T KOG1586|consen 232 -RECKFLKDLLDAIEEQDIEKFTEVVKEFDSI 262 (288)
T ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcc
Confidence 3445544444455555567788899888887
No 231
>PF13730 HTH_36: Helix-turn-helix domain
Probab=37.45 E-value=42 Score=23.80 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=26.2
Q ss_pred eHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 368 TLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 368 tl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
|.+.||+.+|++..-|.+.+..++..|-|
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 78999999999999999999999887743
No 232
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=37.42 E-value=2.2e+02 Score=31.17 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHH--HHHHHHHHHHh-ccCHHHHHHHHHHHHhhhhhH--HHHHHHHH
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGR--ILVAIVQICFE-AKNWTALNEHITMLTKRRSQL--KQAVVKMI 103 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~--~l~~i~~l~~~-~~~~~~l~~~~~~l~~~~~q~--k~av~~~v 103 (452)
+-.+.+.| .++-++.|+.+-..- -.|..-+|| ++-.+-.+|-. -..|+.+.+.+.....--|-+ |.++...|
T Consensus 361 ITtLLKTG-t~e~idrLv~~I~sf--vhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdai 437 (898)
T COG5240 361 ITTLLKTG-TEETIDRLVNLIPSF--VHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAI 437 (898)
T ss_pred HHHHHHcC-chhhHHHHHHHHHHH--HHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 44678888 788899888854322 244444566 56666666665 357777777655444445555 55544444
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVT 130 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~ 130 (452)
..+|.++ |+ .|...++.|++..
T Consensus 438 sd~~~~~---p~--skEraLe~LC~fI 459 (898)
T COG5240 438 SDAMEND---PD--SKERALEVLCTFI 459 (898)
T ss_pred HHHHhhC---ch--HHHHHHHHHHHHH
Confidence 4455543 43 3444444444433
No 233
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.39 E-value=3.6e+02 Score=29.46 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHh
Q psy292 137 EVERARLTHILAKM--KEDEGDVTEAANIIQELQVET 171 (452)
Q Consensus 137 E~er~~l~~~La~i--~e~~gd~~eA~~iL~~l~~Et 171 (452)
|..-..+....+++ +...||+.+|.++|..+..++
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~ 203 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEET 203 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 33344444444444 446788888888888777655
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.90 E-value=4.4e+02 Score=26.34 Aligned_cols=125 Identities=19% Similarity=0.182 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.+..-||..|.+.|+.++|..+|..++.+-. ++.-.. .--++.+.....+.+.....-++.. ..+++
T Consensus 169 ~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~-l~a~i~ll~qaa~~~~~~~l~~~~a----adPdd---- 235 (304)
T COG3118 169 EAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHG-LQAQIELLEQAAATPEIQDLQRRLA----ADPDD---- 235 (304)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHH----hCCCC----
Confidence 3456678888888888888888888776421 111111 1122344444444444333333222 23443
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhh
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQS 284 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~ 284 (452)
...+|.. +..+...+++-+|+.++..++....--+|..-+.+. +=++..+.|.+|-..
T Consensus 236 ~~aa~~l--A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l---le~f~~~g~~Dp~~~ 293 (304)
T COG3118 236 VEAALAL--ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL---LELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH---HHHHHhcCCCCHHHH
Confidence 3444444 777888999999999999998765443343444443 335677777776433
No 235
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=36.87 E-value=76 Score=22.34 Aligned_cols=32 Identities=13% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHhhccceeHHHHHHHhCCChHHHHHHHHhh
Q psy292 359 VMAKYYTRITLQRMCDLLGLPIEETEEFLSSM 390 (452)
Q Consensus 359 ~isk~Ys~Itl~~La~ll~ls~~evE~~ls~m 390 (452)
..-.|+...+...+|+.+|+|+.-|...+.+.
T Consensus 19 ~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra 50 (54)
T PF08281_consen 19 FLLRYFQGMSYAEIAEILGISESTVKRRLRRA 50 (54)
T ss_dssp HHHHHTS---HHHHHHHCTS-HHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 33457899999999999999999999887754
No 236
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.76 E-value=3.5e+02 Score=25.16 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=90.0
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHH-
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKM- 102 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~- 102 (452)
..+..|-++++.+++++|+..|-.|||.-- ...+. -+..+...+..+.|+-..-.-.+..+.+-- -+.+..-.+
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~--g~Ypv--LA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~A 134 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGY--GSYPV--LARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLA 134 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCC--CcchH--HHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHH
Confidence 467788889999999999999999998431 22221 255666777778888777766666655321 011111011
Q ss_pred -HHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHH
Q psy292 103 -IQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKV 181 (452)
Q Consensus 103 -v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~ 181 (452)
++...-.++.-. -+.-.. -+.-+...+.=+ |...+..|+--..+.||+.+|.+....|.-++..+-..+++.
T Consensus 135 Rlraa~lLvD~gs-y~dV~s---rvepLa~d~n~m---R~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRA 207 (221)
T COG4649 135 RLRAAYLLVDNGS-YDDVSS---RVEPLAGDGNPM---RHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRA 207 (221)
T ss_pred HHHHHHHHhcccc-HHHHHH---HhhhccCCCChh---HHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHH
Confidence 222222222110 011111 112222223333 778888888888889999999999998887655444445666
Q ss_pred HHHHHHH
Q psy292 182 TLILEQM 188 (452)
Q Consensus 182 e~~Le~~ 188 (452)
...|..+
T Consensus 208 q~mldlI 214 (221)
T COG4649 208 QIMLDLI 214 (221)
T ss_pred HHHHHHH
Confidence 6666554
No 237
>KOG2300|consensus
Probab=36.22 E-value=5.8e+02 Score=27.51 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH---hhhhh--HHHHHHHHHHHHHhhhcCCCC-H-HHHHHHHHHHHHhhcCcchH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLT---KRRSQ--LKQAVVKMIQECVTYVDKTPS-K-EIKVKLIETLRTVTEGKIYV 136 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~---~~~~q--~k~av~~~v~~~~~~~~~~~~-~-~~~~~l~~~L~~~~e~ki~l 136 (452)
.+..|+-.-.-.|++....+.+...+ .+..+ +-.+-+.+|..++....-.-+ . +---.++++.+... ++.+
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~--~~dl 402 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE--SIDL 402 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh--HHHH
Confidence 34444443345677777766655443 23333 223333445544443321111 1 11223344443222 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCC
Q psy292 137 EVERARLTHILAKMKEDEGDVTEAANIIQELQVE-TYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE 215 (452)
Q Consensus 137 E~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~E-t~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~ 215 (452)
.+.+...||-.|...|+-+.-.+++..+..+ |...-+...+..+++-.--..+..+++..|+..++++.... +..
T Consensus 403 ---~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-nae 478 (629)
T KOG2300|consen 403 ---QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAE 478 (629)
T ss_pred ---HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chh
Confidence 8889999999999999888888888887766 45555667999999998888889999999999998876544 222
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHH
Q psy292 216 KDDVQELKLKYYRLMIELDQHEGSYLAT 243 (452)
Q Consensus 216 ~~~~~~lk~~~~~~~~~~~~~~~df~ea 243 (452)
|. -.|-..+-.+.+.+....+|-.++
T Consensus 479 d~--~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 479 DL--NRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred hH--HHHHHHHHHHHHHHHHHhcchHHH
Confidence 22 233334445555555555555544
No 238
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=36.12 E-value=2e+02 Score=28.55 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCC
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK 216 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~ 216 (452)
.+|++.+...|.++.+...++.+--. .. .--..+...|+.|+..|+...|...+++......++.|
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~--dp----~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIEL--DP----YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc--Cc----cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 55889999999999999999887532 11 11245777899999999999999888888776434433
No 239
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=35.97 E-value=71 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
|+.+.+-...++.+.||+.||+|+.-+.+.|..|...|.+.
T Consensus 9 Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~ 49 (240)
T PRK10411 9 IVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKIL 49 (240)
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34444447899999999999999999999999999987765
No 240
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.89 E-value=3.8e+02 Score=25.24 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=62.6
Q ss_pred cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhc----cC--CCCchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy292 173 GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFF----DD--EKDDVQELKLKYYRLMIELDQHEGSYLATCKH 246 (452)
Q Consensus 173 ~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~----~~--~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~ 246 (452)
..-+...+.-+.|..+-||-..+|-..-..++++|...+. .+ +...+.+.++.| +.|.++-.-++|-+|.+.
T Consensus 110 ~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y--LigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 110 KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY--LIGELNRRLGNYDEAKRW 187 (214)
T ss_pred hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH--HHHHHHHHhCCHHHHHHH
Confidence 4445568999999999999999998877788888865432 11 111124566655 459999999999999999
Q ss_pred HHHHHcCCCCC
Q psy292 247 YRAILTTPCIQ 257 (452)
Q Consensus 247 y~e~~~t~~~~ 257 (452)
|-.++..+...
T Consensus 188 fs~vi~~~~~s 198 (214)
T PF09986_consen 188 FSRVIGSKKAS 198 (214)
T ss_pred HHHHHcCCCCC
Confidence 99999988774
No 241
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=35.88 E-value=59 Score=29.95 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 353 VEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 353 iEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
+.+.|+.+.+-...+++..||+.||+|+.-+-+-|..|-.+|.+
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~ 51 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELR 51 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHH
Confidence 44445555556899999999999999999999999999888865
No 242
>PF12854 PPR_1: PPR repeat
Probab=35.83 E-value=42 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l 167 (452)
..|-.-|.+.|++++|.+++.++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC
Confidence 34677889999999999999865
No 243
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=35.38 E-value=87 Score=30.35 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=34.8
Q ss_pred HHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 356 NIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 356 Ni~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
-|+.+.+-..+|+++.||+.||+|+.-+-+-|..|-..|.+
T Consensus 9 ~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l 49 (256)
T PRK10434 9 AILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTV 49 (256)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 34444455889999999999999999999999999999855
No 244
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=35.16 E-value=3.2e+02 Score=24.16 Aligned_cols=72 Identities=11% Similarity=0.010 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 177 KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 177 ~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.......++....++...+++..|....+++...- ..+ ++ ....+..+|..+...++|-+|...|..++...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~----~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDP----ND-RSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcc----ch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34667778888999999999999999999886543 111 11 22345566888999999999999999998754
No 245
>PF12964 DUF3853: Protein of unknown function (DUF3853); InterPro: IPR024363 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.73 E-value=27 Score=28.64 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=34.6
Q ss_pred eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccC
Q psy292 368 TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 412 (452)
Q Consensus 368 tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~ 412 (452)
-+..||.+||.|..- ++++..+|.|+--|=|+.+.|+|+..
T Consensus 47 G~~GlAklfgcSv~T----a~RiK~sG~id~AI~Q~Gr~IivD~~ 87 (96)
T PF12964_consen 47 GLKGLAKLFGCSVPT----ANRIKKSGKIDPAITQIGRKIIVDAD 87 (96)
T ss_pred hHHHHHHHhCCCchh----HHHHHhcCCccHHHHHcCCEEEEeHH
Confidence 478899999999985 45677789999999999999999854
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=34.38 E-value=3.3e+02 Score=24.16 Aligned_cols=128 Identities=15% Similarity=0.224 Sum_probs=72.7
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----hhhHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR-----RSQLKQAV 99 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~-----~~q~k~av 99 (452)
.+-+|++..-+|..++.++.+...-++.. -....| ++..++. .-+-+.+.+.+..+.+- =|.+|.-|
T Consensus 5 kLmeAK~~ildG~V~qGveii~k~v~Ssn-i~E~NW---vICNiiD----aa~C~yvv~~LdsIGkiFDis~C~NlKrVi 76 (161)
T PF09205_consen 5 KLMEAKERILDGDVKQGVEIIEKTVNSSN-IKEYNW---VICNIID----AADCDYVVETLDSIGKIFDISKCGNLKRVI 76 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--HHHHTH---HHHHHHH----H--HHHHHHHHHHHGGGS-GGG-S-THHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHcCcCC-ccccce---eeeecch----hhchhHHHHHHHHHhhhcCchhhcchHHHH
Confidence 45678888888988999998888766431 122333 3333332 23444555555554432 23344333
Q ss_pred H---------HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy292 100 V---------KMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 100 ~---------~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l 167 (452)
. ..|+.+++++..-.-.+...+++.-|.. .+.+ -..+-.++|..|.+.|+..+|-++|.+.
T Consensus 77 ~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~-----~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 77 ECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEI-----NPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCC-----CHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2 4688888887644444566666554432 2222 3456688999999999999999999763
No 247
>KOG1924|consensus
Probab=34.24 E-value=7.6e+02 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVL 272 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl 272 (452)
++.+++++.+...++=++.-+|.-++++-.-...++-.++.|.++++
T Consensus 367 l~el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlll 413 (1102)
T KOG1924|consen 367 LEELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLL 413 (1102)
T ss_pred HHHHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHH
Confidence 46777888888888888888887777664432223344555554443
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=34.02 E-value=5.5e+02 Score=26.56 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHh---cC
Q psy292 79 TALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKED---EG 155 (452)
Q Consensus 79 ~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~---~g 155 (452)
+.+.+-+..+.++.+...-....+|-+++-....++|-+--++|+++|..+-.-+ .. .-..++..+|-.+-+ .|
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~--~~~~i~~~yafALnRrn~~g 196 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VA--NQHNIKFQYAFALNRRNKPG 196 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hh--cchHHHHHHHHHHhhcccCC
Confidence 4455555555555544432233456666656677888888899999987663322 11 133445555666666 99
Q ss_pred CHHHHHHHHHHH
Q psy292 156 DVTEAANIIQEL 167 (452)
Q Consensus 156 d~~eA~~iL~~l 167 (452)
|.++|.+++..+
T Consensus 197 dre~Al~il~~~ 208 (374)
T PF13281_consen 197 DREKALQILLPV 208 (374)
T ss_pred CHHHHHHHHHHH
Confidence 999999999884
No 249
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=33.86 E-value=86 Score=30.29 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
|+.+.+-...++.+.||+.||+|+.-+.+-|..|-..|.+.
T Consensus 10 Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 10 LLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34444458999999999999999999999999998888773
No 250
>KOG3616|consensus
Probab=33.72 E-value=7.7e+02 Score=28.14 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=53.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhh-------------h-----hhc
Q psy292 151 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN-------------T-----KFF 212 (452)
Q Consensus 151 ~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~-------------~-----~~~ 212 (452)
-....+|.+|..++..++-- +-..-||=+++.-|--.+||.+|+.+.-++- . +.-
T Consensus 742 ai~akew~kai~ildniqdq-------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ-------KTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh-------ccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHH
Confidence 33456799999998887732 1222344444555555555555544333321 0 000
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 213 DDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 213 ~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
.+|.+ ++--...|...+.-.+..+.|-+|-+.|..+
T Consensus 815 ~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 815 EECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 22333 4556666777788888999999999988766
No 251
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=33.48 E-value=25 Score=33.04 Aligned_cols=67 Identities=22% Similarity=0.328 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCC
Q psy292 264 HAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333 (452)
Q Consensus 264 ~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~ 333 (452)
...|+.+++.++|+|.+|...|+.+. ++..+..=|.+...+.-..+. -|+|+--...|..+|-++.+
T Consensus 110 ~~~Lk~AIv~TLL~~~Dp~~vDl~Sd--~~i~l~g~PFLygqVlD~~g~-~I~~~wRA~ryAdYLi~n~L 176 (204)
T PF11873_consen 110 KAHLKQAIVTTLLTPDDPSSVDLFSD--KDIPLSGEPFLYGQVLDQDGQ-PIRWEWRANRYADYLIQNKL 176 (204)
T ss_pred HHHHHHHHHHHhcCCCCCccccCccC--CCCccCCCceehheeecCCCC-eEeeHhHHHHHHHHHHHhhh
Confidence 56799999999999999988887774 344566678877666665555 56887555788877765543
No 252
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=33.30 E-value=3.2e+02 Score=23.57 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=39.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
-..++.+.||+.+++++.-+=..+.+|+..|-|.-.-|..++-
T Consensus 52 ~~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR 94 (144)
T PRK11512 52 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 94 (144)
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCC
Confidence 3579999999999999999999999999999999988888773
No 253
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.20 E-value=4.6e+02 Score=25.41 Aligned_cols=95 Identities=20% Similarity=0.172 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccC--cc-hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh---ccCCCCc
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGS--ME-KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF---FDDEKDD 218 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~--~~-~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~---~~~~~~~ 218 (452)
..=|..+.+.|++.-|+++. -+.+|++.. .+ +.+..+-+.++++..-.. -+.-..+++++..-. -...|+
T Consensus 14 ~~Ga~~ll~~~Q~~sg~DL~-~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~--~p~r~~fi~~ai~WS~~~~~~~Gd- 89 (260)
T PF04190_consen 14 YSGALILLKHGQYGSGADLA-LLLIEVYEKSEDPVDEESIARLIELISLFPPE--EPERKKFIKAAIKWSKFGSYKFGD- 89 (260)
T ss_dssp HHHHHHHHHTT-HHHHHHHH-HHHHHHHHHTT---SHHHHHHHHHHHHHS-TT---TTHHHHHHHHHHHHHTSS-TT---
T ss_pred HHHHHHHHHCCCcchHHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHccCCCCCCC-
Confidence 34477888889998888877 455677622 21 224445555554443211 111233333332211 122344
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYR 248 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~ 248 (452)
+++ +...|..+-.+++|-+|-++|.
T Consensus 90 -p~L----H~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 -PEL----HHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHH----HHHHHHHHHHTT-HHHHHHHHH
T ss_pred -HHH----HHHHHHHHHhhccHHHHHHHHH
Confidence 555 3444776677777777766664
No 254
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=33.13 E-value=60 Score=23.61 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=21.8
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhh
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSM 390 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~m 390 (452)
..++++.||+.||+|..-+...|-+.
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRra 47 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRA 47 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 38999999999999998877776554
No 255
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=33.06 E-value=2.4e+02 Score=22.07 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=34.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
-..++|+.|.+.+|+|..-+-..+..+...|-+..+-.-..+
T Consensus 12 ~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~ 53 (80)
T PF13601_consen 12 NEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGR 53 (80)
T ss_dssp HSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 578999999999999999999999999999999876554444
No 256
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=32.81 E-value=3.8e+02 Score=26.86 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=67.6
Q ss_pred HHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCH-H-------HHHHHHHHH-HH----hhcCcchHHH
Q psy292 72 CFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSK-E-------IKVKLIETL-RT----VTEGKIYVEV 138 (452)
Q Consensus 72 ~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~-~-------~~~~l~~~L-~~----~~e~ki~lE~ 138 (452)
-|+.+..|.+..+...|+|--.|.-.||+|++..++.+..+..+. - ---+..+.+ |. ++.+.| |.
T Consensus 42 ~Fk~~SLd~lI~qsE~L~k~d~qc~~aIsKi~~i~~g~~~ss~gd~~~~~iv~~~~pEy~~~f~W~~~~F~~nKsI--~~ 119 (383)
T COG5127 42 SFKGVSLDGLINQSERLGKLDKQCEGAISKILKIFMGYCRSSNGDRVGKGIVYGSTPEYGDFFEWDRQSFVTNKSI--EK 119 (383)
T ss_pred CccccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccccccccccccccCCchhhhhhhhcchhheeccccH--HH
Confidence 367788999999999999988899999999999999998743310 0 000111111 21 111111 11
Q ss_pred HHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHH
Q psy292 139 ERAR----LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKV 181 (452)
Q Consensus 139 er~~----l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~ 181 (452)
-..+ .+..=+.+.+...+|+.|..-++.++.-+.|++++....
T Consensus 120 ~i~li~~E~~~~~~d~r~~~~~f~~Ak~~~~~~qrk~~G~Ls~~sL~ 166 (383)
T COG5127 120 AILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTRGSLSDISLG 166 (383)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccCChhhhhHh
Confidence 1111 112225667777889999999999888777777665444
No 257
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=32.48 E-value=8.6e+02 Score=28.35 Aligned_cols=125 Identities=10% Similarity=0.115 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
......|...+...|++++|..++.+.... . ...+++++-..-+++..+++..+... ++...+ ..... |
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~-----P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~--~ 99 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE-H-----KKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLK--W 99 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-----CcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccc--h
Confidence 345577899999999999999999854422 2 23344555444489999888877766 343333 33333 6
Q ss_pred HHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhh
Q psy292 221 ELKLKYYRLMIELDQHE-------------GSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQS 284 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~-------------~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~ 284 (452)
..--.|+.+++.++... +++.+|...|.+++.-- +.. ..+|.++..+.-.. +.+++
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n-~~aLNn~AY~~ae~--dL~KA 168 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDN-PEIVKKLATSYEEE--DKEKA 168 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----ccc-HHHHHHHHHHHHHh--hHHHH
Confidence 66667777777777777 67777777777775443 111 23566666555544 44444
No 258
>KOG0212|consensus
Probab=32.46 E-value=86 Score=34.00 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcch-HHHHHHH-HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEK-KEKVTLI-LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~-~~k~e~~-Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
++.+=+...|++++--++++++.-|--.+-.. ..|.-.+ |--+-+++..+|.. +.+++-+.++.+.++ ++.+
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~----Y~~~iv~Pv~~cf~D--~d~~ 99 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG----YLEKIVPPVLNCFSD--QDSQ 99 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH----HHHHhhHHHHHhccC--ccce
Confidence 34445667889999999998887775222222 2232222 33344555555544 777777777788888 9999
Q ss_pred HHHHHHHHHHHHHh
Q psy292 224 LKYYRLMIELDQHE 237 (452)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (452)
++||.|...|..+.
T Consensus 100 vRyyACEsLYNiaK 113 (675)
T KOG0212|consen 100 VRYYACESLYNIAK 113 (675)
T ss_pred eeeHhHHHHHHHHH
Confidence 99999999987654
No 259
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=32.32 E-value=1.6e+02 Score=27.27 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=33.5
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
....+|...||+.+|+++.-|-..|..|...|-|.-.
T Consensus 12 ~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~ 48 (203)
T TIGR02702 12 KQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYE 48 (203)
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEe
Confidence 3567999999999999999999999999999999655
No 260
>PHA02360 hypothetical protein
Probab=32.13 E-value=79 Score=23.85 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q psy292 120 VKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEG-----DVTEAANIIQEL 167 (452)
Q Consensus 120 ~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~g-----d~~eA~~iL~~l 167 (452)
.+-+++|+....+++|+.+|--.+-.+.-++||+.| +..|-.++|-+.
T Consensus 8 ~~d~~iL~~A~~r~l~LDveyPklY~~i~k~YEe~gidFyG~~dEDYDILldk 60 (70)
T PHA02360 8 KKDLQILRAAANRELFLDVEYPKLYKKIRKYYEEEGIDFYGEPDEDYDILLDK 60 (70)
T ss_pred HHHHHHHHHHhcchheeecccHHHHHHHHHHHHHcCCcccCCcchhHHHHHHH
Confidence 344578889999999999999999999999999874 555555555443
No 261
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=31.95 E-value=60 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHH
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLS 388 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls 388 (452)
-...|+-..||+.+|+++.+|-+-+|
T Consensus 25 G~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 25 GVERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp T-SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CCeeECHHHHHHHHCCCHHHhcccCC
Confidence 36899999999999999999987664
No 262
>KOG3677|consensus
Probab=31.94 E-value=2.4e+02 Score=29.59 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=42.7
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhh-----------cCcEEEEec-cCCcEEEeccCCC
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVV-----------SKTITAKID-RPAGIINFARNKD 414 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~-----------~~~l~akID-q~~giV~f~~~~~ 414 (452)
++.+-+.|+.....-+|..++++.++=++.+.+++. +|.....++ ++...|-|--.++
T Consensus 419 ~rsylklyTt~P~kkla~F~D~~d~~~dk~li~Ll~~khkm~nlv~~sg~s~~d~~f~~~s~idfyid~d 488 (525)
T KOG3677|consen 419 IRSYLKLYTTLPVKKLASFLDLTDQERDKFLIQLLVFKHKMKNLVWTSGPSDLDDAFFSRSEIDFYIDKD 488 (525)
T ss_pred HHHHHHHHHhccHHHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHhcCCccccccccCcceeeEEechh
Confidence 566778899999999999999999997777777764 445555555 4555677754444
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.42 E-value=5.1e+02 Score=25.40 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
-..|-=+...|||.+|...++.-.. -|-.-+.---.-|||=+. ++..+|+..|..+..++...+-..+.. +|.-+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~-~YP~s~~~~nA~yWLGe~--~y~qg~y~~Aa~~f~~~~k~~P~s~KA--pdall 219 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIK-KYPNSTYTPNAYYWLGES--LYAQGDYEDAAYIFARVVKDYPKSPKA--PDALL 219 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCcccchhHHHHHHH--HHhcccchHHHHHHHHHHHhCCCCCCC--hHHHH
Confidence 3445556678999999988887442 242222335567888775 678899999998888887766555544 55544
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
+. |......++--+||..|.++...+.-
T Consensus 220 Kl----g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 220 KL----GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HH----HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 44 55555577778999999999888754
No 264
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=31.40 E-value=1.1e+02 Score=23.92 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=31.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
..++++.||+.+|+|..-+-+.+..|...|-+..
T Consensus 19 ~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~ 52 (91)
T smart00346 19 GGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQ 52 (91)
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeee
Confidence 3699999999999999999999999999998865
No 265
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=31.35 E-value=1.1e+02 Score=25.85 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=38.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc---EEEeccC
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG---IINFARN 412 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g---iV~f~~~ 412 (452)
-..||++.||+.|..|+-.+-.+|-+|...|-|.=+==++.| .++|..+
T Consensus 17 ~~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~ 68 (115)
T PF12793_consen 17 PVEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKS 68 (115)
T ss_pred CcceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeC
Confidence 457899999999999999999999999999988543333433 4777644
No 266
>PRK10870 transcriptional repressor MprA; Provisional
Probab=30.91 E-value=2.3e+02 Score=25.69 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=37.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++...||+.++++..-+=..+.+|+..|-+.-.-|..++
T Consensus 70 ~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~Dr 110 (176)
T PRK10870 70 HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDR 110 (176)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 35899999999999999999999999999999888887776
No 267
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=30.77 E-value=45 Score=23.90 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=19.3
Q ss_pred cceeHHHHHHHhCCChHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLS 388 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls 388 (452)
..+++..||+.+|+|+.++-..+.
T Consensus 2 ~~i~V~elAk~l~v~~~~ii~~l~ 25 (54)
T PF04760_consen 2 EKIRVSELAKELGVPSKEIIKKLF 25 (54)
T ss_dssp -EE-TTHHHHHHSSSHHHHHHHH-
T ss_pred CceEHHHHHHHHCcCHHHHHHHHH
Confidence 358899999999999999888873
No 268
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=30.44 E-value=1.1e+02 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=24.7
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
++...+...+|+.+|+|+.-+...+....
T Consensus 15 ~~~g~s~~eia~~l~is~~tv~~~~~~~~ 43 (58)
T smart00421 15 LAEGLTNKEIAERLGISEKTVKTHLSNIM 43 (58)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35677999999999999999999887663
No 269
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.27 E-value=50 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLS 388 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls 388 (452)
+.+|++.+|.-||+|++++|+.|.
T Consensus 22 ~~ls~~~ia~dL~~s~~~le~vL~ 45 (89)
T PF10078_consen 22 SGLSLEQIAADLGTSPEHLEQVLN 45 (89)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 678999999999999999999864
No 270
>KOG1155|consensus
Probab=30.01 E-value=6.6e+02 Score=26.93 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
|+=..|++.|++.+..++|.+.....-. .+. . -...++....||=..+|...|..+..|.......++.-++.-
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~--~~d---t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAIL--LGD---T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--ccc---c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 5557789999999999999999887542 121 1 345788899999999999999998888876542221110134
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.+.+.. .+.|+.-.+||-+|+-+--.+...
T Consensus 507 ~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 507 IKARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 555554 488888888888887655555433
No 271
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=29.75 E-value=58 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=20.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
=.-||.+.||..+|.|.++|...|..|-
T Consensus 36 G~PVt~~~LA~a~g~~~e~v~~~L~~~p 63 (77)
T PF12324_consen 36 GQPVTVEQLAAALGWPVEEVRAALAAMP 63 (77)
T ss_dssp TS-B-HHHHHHHHT--HHHHHHHHHH-T
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHhCC
Confidence 4568999999999999999999998874
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=29.70 E-value=1.8e+02 Score=19.49 Aligned_cols=29 Identities=7% Similarity=-0.154 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 183 LILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 183 ~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.++.-.+.|...|++.+|...++++....
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667899999999999999999998764
No 273
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=29.41 E-value=1.1e+02 Score=21.88 Aligned_cols=39 Identities=8% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 353 VEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 353 iEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
.++-+.++.+.=...+...||..+|++..-|-+.+..++
T Consensus 6 ~d~lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~ 44 (53)
T PF13613_consen 6 EDQLLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWI 44 (53)
T ss_pred HHHHHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHH
Confidence 455566777778899999999999999998888777665
No 274
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=29.29 E-value=3.2e+02 Score=22.41 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=36.6
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++...||+.++++..-+=..+..|+..|-|.-.-|..++
T Consensus 42 ~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~ 82 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDE 82 (109)
T ss_pred CcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccC
Confidence 45999999999999999999999999999999866666665
No 275
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=28.91 E-value=1.8e+02 Score=22.63 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
+.++++- ++|++.|-+..|++...+--.|++|--.|.|.-+
T Consensus 11 L~~ls~~--c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 11 LIILSKR--CCTLEELEEKTGISKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHhc--cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeee
Confidence 3455554 9999999999999999999999999999988543
No 276
>PRK11050 manganese transport regulator MntR; Provisional
Probab=28.66 E-value=4.1e+02 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=31.7
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
..++...||+.++++..-+-..+..|...|.|.-+
T Consensus 50 ~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~ 84 (152)
T PRK11050 50 GEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMR 84 (152)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 57899999999999999999999999999977653
No 277
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=28.54 E-value=1.4e+02 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.7
Q ss_pred eeHHHHHHHhCCC-hHHHHHHHHhhhhcCcEE
Q psy292 367 ITLQRMCDLLGLP-IEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 367 Itl~~La~ll~ls-~~evE~~ls~mI~~~~l~ 397 (452)
-|+..||+.||++ +.-|-..|..|...|.|.
T Consensus 26 Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 26 PTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp --HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 5999999999996 999999999999988774
No 278
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=28.54 E-value=1.9e+02 Score=23.25 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=43.4
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy292 89 TKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQ 165 (452)
Q Consensus 89 ~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~ 165 (452)
+.++||. +.=|++|+.+.+.+.... ..-..+|+.|+.-.+++- |--+..+|..+.-..+++++-+.+++
T Consensus 27 s~kkgq~-s~Rt~fvrsivrEiaGls--PyErr~i~Lirns~~krA-----rKlakKRLGs~kRAkaKvEel~~~i~ 95 (97)
T COG5051 27 SRKKGQL-SKRTEFVRSIVREIAGLS--PYERRVIELIRNSQDKRA-----RKLAKKRLGSLKRAKAKVEELTSVIQ 95 (97)
T ss_pred chhhhcc-ccHHHHHHHHHHHHccCC--HHHHHHHHHHHhcccHHH-----HHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3466776 222357777777666544 344556666665555442 44566778888888888888777775
No 279
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=28.42 E-value=3.7e+02 Score=22.83 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
-..+|..+-..|+.++|..+++.... ..++.....+.++.-...+...|++..|..+..+....+ +++ .+.-.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~---~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~-~~~~~ 76 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA---AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDD-ELNAA 76 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc-cccHH
Confidence 45678889999999999999998653 455666777788888888999999999999998876654 221 02223
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
++ ...+.-....+.+.+|-..+..++
T Consensus 77 l~--~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 77 LR--VFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HH--HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 32 223555566788888888887764
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=28.09 E-value=1.5e+02 Score=18.21 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l 167 (452)
-..++.++...|++++|...++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 345677888888888888777654
No 281
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=28.02 E-value=1.3e+02 Score=20.67 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.1
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSM 390 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~m 390 (452)
++...+...+|+.+|+|+.-+...+.++
T Consensus 12 ~~~~~s~~eia~~l~~s~~tv~~~~~~~ 39 (57)
T cd06170 12 LAEGKTNKEIADILGISEKTVKTHLRNI 39 (57)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567899999999999999999887765
No 282
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=27.60 E-value=1.1e+02 Score=28.44 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 358 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 358 ~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
..+.+.+.-.|...||+.||+|+.-|+..++.+...|.+...++-
T Consensus 169 ~~~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~ 213 (225)
T PRK10046 169 KLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVH 213 (225)
T ss_pred HHHHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEeec
Confidence 445555666789999999999999999999999999988776653
No 283
>cd08312 Death_MyD88 Death domain of Myeloid Differentation primary response protein MyD88. Death Domain (DD) of Myeloid Differentiation primary response protein 88 (MyD88). MyD88 is an adaptor protein involved in interleukin-1 receptor (IL-1R)- and Toll-like receptor (TLR)-induced activation of nuclear factor-kappaB (NF-kB) and mitogen activated protein kinase pathways that lead to the induction of proinflammatory cytokines. It is a key component in the signaling pathway of pathogen recognition in the innate immune system. MyD88 contains an N-terminal DD and a C-terminal Toll/IL-1 Receptor (TIR) homology domain that mediates interaction with TLRs and IL-1R. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and
Probab=27.53 E-value=1.1e+02 Score=23.89 Aligned_cols=46 Identities=15% Similarity=0.468 Sum_probs=31.2
Q ss_pred HHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHH-----HHHHHHHHHHHH
Q psy292 370 QRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSAS-----LNELMKLVNNTT 437 (452)
Q Consensus 370 ~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~-----i~~ll~~v~k~~ 437 (452)
..||+.+|++..++..+-. .+.++...|+.|..+ |..|+..+.++.
T Consensus 20 r~LA~~Lg~~~~~I~~f~~----------------------~~sPt~~lL~~W~~r~~~atv~~L~~~L~~~~ 70 (79)
T cd08312 20 TALAEEMGFEYLEIRNFET----------------------KPSPTEKVLEDWETRPDGATVGNLLELLEKLE 70 (79)
T ss_pred HHHHHHcCCCHHHHHHHcc----------------------CCChHHHHHHHHHhcCCCCcHHHHHHHHHHcC
Confidence 4588888988877763310 135677899999665 777776666554
No 284
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.10 E-value=3.9e+02 Score=25.57 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HHhhccChHH
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMR-LCLAKKDYIR 199 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~r-l~l~~~d~~~ 199 (452)
...+...+|.-|...|++++|.++++.+.. +|+.-+=..-+..+|..++ .+...+|...
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~-~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAAS-SYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 567788899999999999999999999843 4543222344444444433 3344455443
No 285
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=26.96 E-value=1.5e+02 Score=28.71 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l 396 (452)
|+.+-+-...+++..||+.|++|+.-+-+-|..|-..|.+
T Consensus 10 Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l 49 (252)
T PRK10906 10 IIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKI 49 (252)
T ss_pred HHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 3444455889999999999999999999999999999876
No 286
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=26.81 E-value=1.2e+02 Score=20.84 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=19.8
Q ss_pred HhhccceeHHHHHHHhCCChHHH
Q psy292 361 AKYYTRITLQRMCDLLGLPIEET 383 (452)
Q Consensus 361 sk~Ys~Itl~~La~ll~ls~~ev 383 (452)
.+.|..+|+..||+..|+|..-+
T Consensus 11 ~~G~~~~s~~~Ia~~~gvs~~~~ 33 (47)
T PF00440_consen 11 EKGYEAVSIRDIARRAGVSKGSF 33 (47)
T ss_dssp HHHTTTSSHHHHHHHHTSCHHHH
T ss_pred HhCHHhCCHHHHHHHHccchhhH
Confidence 35699999999999999998654
No 287
>PHA02591 hypothetical protein; Provisional
Probab=26.80 E-value=64 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=20.3
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHh
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSS 389 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~ 389 (452)
-.|.+.||++||+|.+.|-+.+..
T Consensus 59 GlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 59 GFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHhc
Confidence 467899999999999998887654
No 288
>KOG3060|consensus
Probab=26.34 E-value=6.4e+02 Score=24.88 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHhhccC
Q psy292 118 IKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY-GSMEKKEKVTLILEQMRLCLAKKD 196 (452)
Q Consensus 118 ~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~-~~~~~~~k~e~~Le~~rl~l~~~d 196 (452)
.-.+.+++|+..-+|.- |+....|-.+|..|.+++|.+.+..+.-|-- .....+.|+.++ ...|.
T Consensus 70 lAq~C~~~L~~~fp~S~-------RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAil-------ka~GK 135 (289)
T KOG3060|consen 70 LAQKCINQLRDRFPGSK-------RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAIL-------KAQGK 135 (289)
T ss_pred HHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHH-------HHcCC
Confidence 34445556544445542 3445568889999999999999998875531 112222333332 22333
Q ss_pred hHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 197 YIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 197 ~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
...|-.-++.-..+++. | ++. ....+.+|...++|..|+-||-|+.-+.+.
T Consensus 136 ~l~aIk~ln~YL~~F~~---D--~EA----W~eLaeiY~~~~~f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMN---D--QEA----WHELAEIYLSEGDFEKAAFCLEELLLIQPF 186 (289)
T ss_pred cHHHHHHHHHHHHHhcC---c--HHH----HHHHHHHHHhHhHHHHHHHHHHHHHHcCCC
Confidence 33333333333344432 2 333 233477888899999999999999766433
No 289
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=26.33 E-value=1.5e+02 Score=28.76 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 355 HNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 355 hNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
+-|..+.+--..|+++.||++||+|+.-+-+-|..|-..|.+.
T Consensus 8 ~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~ 50 (253)
T COG1349 8 QKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLL 50 (253)
T ss_pred HHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEE
Confidence 3344444457899999999999999999999999999998764
No 290
>KOG1125|consensus
Probab=26.32 E-value=8.8e+02 Score=26.51 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HhhccC-hHHHHHHHHHhhhhhccCCCCc
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRL--CLAKKD-YIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl--~l~~~d-~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.+..-|.-+|.-.|+|++|.+.++...-. +.- .++ .==|| -|..++ ...|-..++||...- ||.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pn--d~~-----lWNRLGAtLAN~~~s~EAIsAY~rALqLq---P~y- 497 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPN--DYL-----LWNRLGATLANGNRSEEAISAYNRALQLQ---PGY- 497 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCc--hHH-----HHHHhhHHhcCCcccHHHHHHHHHHHhcC---CCe-
Confidence 45667889999999999999999865432 111 111 01122 234443 446777888887654 443
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.+.||-. |+-++-.+.|.||.++|.+++.--
T Consensus 498 ---VR~RyNl--gIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 498 ---VRVRYNL--GISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred ---eeeehhh--hhhhhhhhhHHHHHHHHHHHHHhh
Confidence 4677765 999999999999999999998763
No 291
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=26.15 E-value=1.9e+02 Score=26.71 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=33.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
..+++..||+.+|+|+.-+-+.+..|...|-+.-.-++
T Consensus 156 g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~r 193 (203)
T TIGR01884 156 GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGRK 193 (203)
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCC
Confidence 56999999999999999999999999999988765443
No 292
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=25.63 E-value=2e+02 Score=19.11 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=23.8
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
+...+...+|+.+|+|...+-..+....
T Consensus 24 ~~~~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 24 GEGLSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3889999999999999999888776643
No 293
>PRK04217 hypothetical protein; Provisional
Probab=25.36 E-value=2e+02 Score=24.22 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=34.1
Q ss_pred hccceeHHHHHHHhCCChHH-------HHHHHHhhhhcCcEEEEeccCCcE
Q psy292 363 YYTRITLQRMCDLLGLPIEE-------TEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~e-------vE~~ls~mI~~~~l~akIDq~~gi 406 (452)
+|..+|.+.||+.+|+|..- +.+.|.+++......+.+-+++.+
T Consensus 55 ~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L~~~~~~~~~~~~~~~ 105 (110)
T PRK04217 55 DYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQMLVEGRELIILPQGNEV 105 (110)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccceeEecCCccc
Confidence 46889999999999999764 445667778888777777766654
No 294
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=25.23 E-value=1.3e+02 Score=22.34 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=28.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
+-+.|+..|.+..++|+.++-+-++-||--|-+.
T Consensus 25 ~G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~ 58 (62)
T PF08221_consen 25 RGRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQ 58 (62)
T ss_dssp C-SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEE
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCee
Confidence 8899999999999999999999999999887553
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.85 E-value=6.4e+02 Score=24.42 Aligned_cols=177 Identities=14% Similarity=0.069 Sum_probs=98.9
Q ss_pred hcCCcHHHHHHHHHHhh--hhccCCchhHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy292 34 AEGKFHDAIDSLLALEK--QTRTGSDMVSTGRILVAIVQICFEAK-NWTALNEHITMLTKRRSQLKQAVVKMIQECVTYV 110 (452)
Q Consensus 34 ~~~~~~~a~~~l~~lek--~~r~~~d~~~~~~~l~~i~~l~~~~~-~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~ 110 (452)
++|+++-|.--+-.... ..+.+.......+.|..+++-..+.+ +++.....+ +.+.+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL------------------~~a~~~l 66 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWL------------------QRAYDIL 66 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH------------------HHHHHHH
Confidence 45556665554443321 14445556666677777777777776 555443333 2333333
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHhccCcchHHHHHHHHHH
Q psy292 111 DKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVT---EAANIIQELQVETYGSMEKKEKVTLILEQ 187 (452)
Q Consensus 111 ~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~---eA~~iL~~l~~Et~~~~~~~~k~e~~Le~ 187 (452)
+.-+. ......-....|..+-+-||..|.+.++.+ +|.+++..++.| + ..+.+.++..
T Consensus 67 ~~~~~-------------~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~-----~~~~~~~~L~ 127 (278)
T PF08631_consen 67 EKPGK-------------MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-Y-----GNKPEVFLLK 127 (278)
T ss_pred Hhhhh-------------ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-C-----CCCcHHHHHH
Confidence 21000 011111223447777788888888877654 566666666554 2 2466777777
Q ss_pred HHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 188 MRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 188 ~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
++++....|...+...+.+.-..+--...+ .+.-+. ..-..+..+...|+.+++.++...
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~~~e~~--~~~~l~-----~i~~l~~~~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVDHSESN--FDSILH-----HIKQLAEKSPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcccccch--HHHHHH-----HHHHHHhhCcHHHHHHHHHHHHHH
Confidence 777777888888888777776554211111 222221 112334566677888888887653
No 296
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=24.68 E-value=1.1e+02 Score=21.32 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=22.0
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhh
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSM 390 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~m 390 (452)
...|+..+|..+|+|..-|...+-+.
T Consensus 26 ~~~s~~~vA~~~~vs~~TV~ri~~~~ 51 (52)
T PF13542_consen 26 ESRSFKDVARELGVSWSTVRRIFDRY 51 (52)
T ss_pred hcCCHHHHHHHHCCCHHHHHHHHHhh
Confidence 34799999999999999998877554
No 297
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=24.53 E-value=4.4e+02 Score=22.37 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=69.5
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.++.|...-..|+.++|+..+.. ++. +-++....+++.++...++..|++++-...+......
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~------------ 67 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE------------ 67 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 35666777778999999999988 443 2344556679999999999999999986666544421
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVET 171 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et 171 (452)
.|+.+. ...+..-+|-.+...|..++|...+-....++
T Consensus 68 ---------~p~~~~---------------------~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 68 ---------FPDDEL---------------------NAALRVFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred ---------CCCccc---------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 233211 12233445667778889999988887766654
No 298
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=24.51 E-value=78 Score=24.20 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.0
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHh
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSS 389 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~ 389 (452)
..-|.+.||+.+|+|++++...+..
T Consensus 19 r~Pt~eEiA~~lgis~~~v~~~l~~ 43 (78)
T PF04539_consen 19 REPTDEEIAEELGISVEEVRELLQA 43 (78)
T ss_dssp S--BHHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHcccHHHHHHHHHh
Confidence 5678999999999999999998874
No 299
>PRK15331 chaperone protein SicA; Provisional
Probab=24.50 E-value=5.4e+02 Score=23.39 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
-..|--+...|++++|..+.+-|-. +.... -+|++=-.-.+...++|..|...+..+...-.+++..
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------- 107 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCI--YDFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP------- 107 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-------
Confidence 4457777899999999999987764 33222 4578888888999999999998888777654444432
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.|| .|.-+..-++...|-.+|..+.+.+
T Consensus 108 ~f~--agqC~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 108 VFF--TGQCQLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred cch--HHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 333 4888888888888888888887744
No 300
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=24.48 E-value=6.4e+02 Score=24.22 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q psy292 65 LVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLT 144 (452)
Q Consensus 65 l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~ 144 (452)
+..++.-+...++|..+.+++..|++ ++|--=|+.+-.. .-++.+....|++.|...-..+-.||.--+.+.
T Consensus 113 f~~lL~~~~~~~dy~~~~~~LkslsP------S~iDlEIRsL~~~--~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~ 184 (237)
T PF04192_consen 113 FTRLLRSASESEDYSEFLEYLKSLSP------SAIDLEIRSLSPE--SGGSYEELVSFLRFLTYRLKSRRDFELVQAYLS 184 (237)
T ss_pred HHHHHHhhcccccHHHHHHHHHhCCh------hHHHHHHHhccCc--cCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34455556778999999999999987 3333334433310 223345666677766544444555554333333
Q ss_pred ---HHHHHHHHhcCC---HHHHHHHHHHHHHHh
Q psy292 145 ---HILAKMKEDEGD---VTEAANIIQELQVET 171 (452)
Q Consensus 145 ---~~La~i~e~~gd---~~eA~~iL~~l~~Et 171 (452)
..-+......++ +.+++.-+.+++.++
T Consensus 185 vFLk~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~ 217 (237)
T PF04192_consen 185 VFLKVHGDVIMESEEEEELREALEELREAQESE 217 (237)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 222445555666 777777777776543
No 301
>PRK12370 invasion protein regulator; Provisional
Probab=24.22 E-value=9.2e+02 Score=25.98 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..++.++...|++++|...++.... ....+. ........+++..+++..|.....++.... .++. +.
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~----~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~--~~--- 442 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLK--LDPTRA----AAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDN--PI--- 442 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCh----hhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccC--HH---
Confidence 5568889999999999999987542 111111 111223334566788988888888765442 2332 23
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
++...+..+...+++-+|-..|..+...
T Consensus 443 -~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 443 -LLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 2344578888899999999888776433
No 302
>PRK14574 hmsH outer membrane protein; Provisional
Probab=23.78 E-value=1.2e+03 Score=26.98 Aligned_cols=172 Identities=9% Similarity=0.043 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhh-c-Ccch
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRR----SQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVT-E-GKIY 135 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~----~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~-e-~ki~ 135 (452)
.++....+-.+...|+++.+.+.+..|..-. .+.+.+++. . |+. ....+.-..+++.+-.-. + ....
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad----a--yl~-~~~P~kA~~l~~~~~~~~~~~~~~~ 364 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS----A--YID-RRLPEKAAPILSSLYYSDGKTFRNS 364 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH----H--HHh-cCCcHHHHHHHHHHhhccccccCCC
Confidence 4455566666666677777777666666211 122222221 1 121 111233344454442111 1 1222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc------c---CcchHHHHHHHHHHHHHHhhccChHHHHHHHHH
Q psy292 136 VEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY------G---SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKK 206 (452)
Q Consensus 136 lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~------~---~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K 206 (452)
.+.+ ....|.--|.+.|++++|..+++.+...+- + ..+...-.+.....+..+...||+..|+..+.+
T Consensus 365 ~~~~---~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 365 DDLL---DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred cchH---HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 235677778899999999999999875331 1 123335557777778888999999999999888
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 207 INTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 207 ~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
..... ||+ ..+.+ .++.++..++.+.+|-..|..+..
T Consensus 442 l~~~a---P~n--~~l~~----~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 442 LSSTA---PAN--QNLRI----ALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHhC---CCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHhh
Confidence 75443 676 66765 348899999999999999976643
No 303
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=23.62 E-value=1.4e+02 Score=22.81 Aligned_cols=33 Identities=6% Similarity=0.181 Sum_probs=26.5
Q ss_pred ccceeHHHHHH-HhCCChHHHHHHHHhhhhcCcE
Q psy292 364 YTRITLQRMCD-LLGLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 364 Ys~Itl~~La~-ll~ls~~evE~~ls~mI~~~~l 396 (452)
=+..-|..++. ..+..+-+|-+.+..||.+|++
T Consensus 17 KskfYfkD~~k~~pd~k~R~vKKi~~~LV~Eg~l 50 (67)
T PF08679_consen 17 KSKFYFKDFYKAFPDAKPREVKKIVNELVNEGKL 50 (67)
T ss_dssp SS-EEHHHHHHH-TTS-HHHHHHHHHHHHHTTSE
T ss_pred CCceeHHHHHHHCCCcCHHHHHHHHHHHHhhCeE
Confidence 46677888888 6688999999999999999987
No 304
>PRK12370 invasion protein regulator; Provisional
Probab=23.29 E-value=9.5e+02 Score=25.85 Aligned_cols=95 Identities=1% Similarity=-0.142 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
-..++.++...|++++|...++....- .. . -.+.+.....++...|++..|...+.++...- |++ +..
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P---~--~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~--~~~- 408 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLL-SP---I--SADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTR--AAA- 408 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-CC---C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCC--hhh-
Confidence 346688999999999999999876521 11 1 12345555778889999999999999887653 322 211
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.+.. +..+...++|-+|-..|.++...
T Consensus 409 -~~~~--~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 409 -GITK--LWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred -HHHH--HHHHHhccCHHHHHHHHHHHHHh
Confidence 1111 22223356788888888887643
No 305
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=23.02 E-value=1.4e+02 Score=28.76 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 353 VEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 353 iEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
+.+-|..+.+-+..|+++.||+.||+|++-+-+-|..|=
T Consensus 8 R~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le 46 (252)
T PRK10681 8 RIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHS 46 (252)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhh
Confidence 344455556669999999999999999998888888754
No 306
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=22.89 E-value=3.1e+02 Score=22.18 Aligned_cols=61 Identities=15% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhH------HHHHHHHHHHHHH
Q psy292 358 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGE------ILNEWSASLNELM 430 (452)
Q Consensus 358 ~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~------~l~~W~~~i~~ll 430 (452)
.++..|=.-|+.+..|.++|-|+.- +..||..|+|-+ |.+.+|.+++. -+..|+.-++.+.
T Consensus 4 ~~~~~p~d~v~~~~FA~~IGKt~sA----Vr~Mi~~gKLP~--------i~~~dP~~p~~rgE~wI~~~ewn~~~~~a~ 70 (87)
T PF10743_consen 4 QVSEYPSDAVTYEKFAEYIGKTPSA----VRKMIKAGKLPV--------IEMRDPEKPNGRGEWWIYIPEWNRGVREAY 70 (87)
T ss_pred hHHhhhccccCHHHHHHHHCCCHHH----HHHHHHcCCCCe--------EeccCCCCCCCceeEEEeHHHHHHHHHHHH
Confidence 3444557789999999999998764 677999999865 56666654332 3566776555443
No 307
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.84 E-value=4.8e+02 Score=23.95 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=51.2
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE--EeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHH
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAGIINFARNKDPGEILNEWSASLNELMKLV 433 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a--kIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v 433 (452)
-+|=+.||+.+|+...++-+.|..+=.+|.+.. +.|...|..++.|.-+...+...--..+..++..+
T Consensus 32 e~tDeela~~l~i~~~~vrriL~~L~e~~li~~~k~rd~~~~~~~y~w~~~~~~v~~~l~~~~~~~le~L 101 (176)
T COG1675 32 ELTDEELAELLGIKKNEVRRILYALYEDGLISYRKKRDEESGWEEYTWYINYEKVLEVLKGKKRKILEKL 101 (176)
T ss_pred CcChHHHHHHhCccHHHHHHHHHHHHhCCceEEEeecccCCCcEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 377889999999999999999999999998854 78999998777776554445544444444444443
No 308
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=22.68 E-value=3.8e+02 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=28.8
Q ss_pred eHHHHHHHh--CCChHHHHHHHHhhhhcCcEEE
Q psy292 368 TLQRMCDLL--GLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 368 tl~~La~ll--~ls~~evE~~ls~mI~~~~l~a 398 (452)
....||+.+ ++|+++|+.-|.-|..-|-|.=
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k 73 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKK 73 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEE
Confidence 889999999 9999999999999999998743
No 309
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=22.45 E-value=1.2e+02 Score=17.84 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
.+-+.|.+.|++++|.+++.++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhH
Confidence 345678889999999999988763
No 310
>KOG2041|consensus
Probab=22.41 E-value=1.2e+03 Score=26.57 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=43.6
Q ss_pred HHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q psy292 188 MRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVL 267 (452)
Q Consensus 188 ~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~L 267 (452)
+.|++..+||-+.-.+++ ..+++++.+.+-.=..-+|.++...+...+|+++|-..-++ +..+.||
T Consensus 767 ielr~klgDwfrV~qL~r-------~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecl 832 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIR-------NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECL 832 (1189)
T ss_pred HHHHHhhhhHHHHHHHHH-------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHH
Confidence 445677889988877665 11111112333333345788889999999999999877332 3445555
Q ss_pred HHHHHH
Q psy292 268 QNVVLY 273 (452)
Q Consensus 268 k~~vl~ 273 (452)
-..=.|
T Consensus 833 y~le~f 838 (1189)
T KOG2041|consen 833 YRLELF 838 (1189)
T ss_pred HHHHhh
Confidence 444433
No 311
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.33 E-value=1.9e+02 Score=17.45 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 65 LVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 65 l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
...++..|.+.|+++...+.+..+..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45688899999999998887776664
No 312
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=22.32 E-value=1.9e+02 Score=21.59 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=38.8
Q ss_pred ceeHHHHHHHhCC--ChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q psy292 366 RITLQRMCDLLGL--PIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHL 439 (452)
Q Consensus 366 ~Itl~~La~ll~l--s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~~~l 439 (452)
.++.+++.+++|+ +.+++.+.|.+|= +....+..++.+.+.-|. |-.+|..-++.++.+.+.
T Consensus 5 ~~~~~~i~~llG~~i~~~ei~~~L~~lg----~~~~~~~~~~~~~v~~P~--------~R~Di~~~~DliEei~r~ 68 (71)
T smart00874 5 TLRRERINRLLGLDLSAEEIEEILKRLG----FEVEVSGDDDTLEVTVPS--------YRFDILIEADLIEEVARI 68 (71)
T ss_pred EecHHHHHHHHCCCCCHHHHHHHHHHCC----CeEEecCCCCeEEEECCC--------CccccCcccHHHHHHHHH
Confidence 4678899999996 4567777777662 333333324566666663 444555666667666554
No 313
>PF13518 HTH_28: Helix-turn-helix domain
Probab=22.25 E-value=1.3e+02 Score=20.75 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=30.7
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccC
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 403 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~ 403 (452)
.+-...|...+|..+|+|...+..-+...=..| +.|-.+++
T Consensus 8 ~~~~g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l~~~~ 48 (52)
T PF13518_consen 8 LYLEGESVREIAREFGISRSTVYRWIKRYREGG-IEGLKPKK 48 (52)
T ss_pred HHHcCCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHhccCC
Confidence 334566999999999999999988888777666 44544443
No 314
>KOG1931|consensus
Probab=22.01 E-value=1.4e+03 Score=27.18 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHhhcCcc-----hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy292 125 TLRTVTEGKI-----YVEVERARLTHILAKMKEDEGDVTEAANIIQELQVET 171 (452)
Q Consensus 125 ~L~~~~e~ki-----~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et 171 (452)
.|+.+.+++. |.| -.-++.+||-+++.-.-+++|+.-++++-.+-
T Consensus 196 ~iRslre~r~~~~wdF~~--fFl~kE~LA~iFe~l~l~edAL~qydel~a~~ 245 (1156)
T KOG1931|consen 196 SIRSLREKRNSPGWDFCE--FFLTKEKLAFIFEMLNLLEDALLQYDELDAEF 245 (1156)
T ss_pred HHHHHHhhcCCchHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6677777776 553 55677999999999999999999999988764
No 315
>KOG1861|consensus
Probab=21.78 E-value=1e+03 Score=25.56 Aligned_cols=109 Identities=13% Similarity=0.146 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCC
Q psy292 137 EVERARLTHILAKMKEDEGDVTEAANIIQELQVET-YGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE 215 (452)
Q Consensus 137 E~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et-~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~ 215 (452)
|+.+..|..-..+..++ .+|.=+.+.+..|.-+- -..+-...=+++|=.-+|+.|+.||......--.+...++ .+
T Consensus 304 ~VL~ksL~~vkdk~k~~-~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEkGD~~EfNQCQtQLk~LY-~e- 380 (540)
T KOG1861|consen 304 EVLKKSLCLVKDKWKAK-ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEKGDLEEFNQCQTQLKALY-SE- 380 (540)
T ss_pred HHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhcCCHHHHHHHHHHHHHHH-cc-
Confidence 33333343333333333 56666666555544331 1222233445666667999999999886655555555554 32
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 216 KDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 216 ~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
|. +--...|-.|.+.|+....|+.+.-....++
T Consensus 381 gi--pg~~~EF~AYriLY~i~tkN~~di~sll~~l 413 (540)
T KOG1861|consen 381 GI--PGAYLEFTAYRILYYIFTKNYPDILSLLRDL 413 (540)
T ss_pred CC--CCchhhHHHHHHHHHHHhcCchHHHHHHHhc
Confidence 21 1227788889999999999999888777776
No 316
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=21.74 E-value=3.2e+02 Score=27.31 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 23 DEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
.+..++|..+++++.+++|+..|..--.+++ ..-.-|..-..++++|.+.|..+....++..|..
T Consensus 214 ~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~---s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 214 EELREEARALAAEGGLEAALQRLQQRLAQAR---EPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCC---ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778889988889999998876333332 2222455667789999999999998888877764
No 317
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=21.42 E-value=2e+02 Score=23.47 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=27.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
...++-+.||+.+|+++.++-+.|..+-.+|-+..+
T Consensus 25 ~~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 25 KGELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp H--B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEE
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEE
Confidence 356888999999999999999999999999988543
No 318
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=21.30 E-value=3.1e+02 Score=19.94 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=23.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
-..++++.||+.+|+|.--+-..+..+=
T Consensus 17 ~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 17 NKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6789999999999999998888877653
No 319
>KOG0547|consensus
Probab=21.10 E-value=1.1e+03 Score=25.62 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK-MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~-~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
++..-+..+|=.|++-.-.+.+....+- ..+.-. .|....-|++.-.+.+....|=+.. .+-...-.+=..|.+
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~-~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKL----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAE-DLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhc----CcccchHHHHHHHHHhhhhccHHHHHHHHHHH-hcCCCCCchhHhHHH
Confidence 4444455555556665555544443321 122222 5666666765433322222222222 222222222235888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh---ccChHHHHHHHHHhhhhhccCCCCch
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLA---KKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~---~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
+...|-++-+...||++|..+= + +.++-.+++|.. .+-+..+..+..-+..++..++
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~------------p----e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~---- 462 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLD------------P----ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP---- 462 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC------------h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----
Confidence 8887777777777777775432 2 233333444332 2344555667777777774443
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
+. |.+.+.++..+.+|-.|-+.|.-+.+-..
T Consensus 463 -Ev----y~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 463 -EV----YNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred -hH----HHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 33 56679999999999999999999976543
No 320
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=21.08 E-value=2.1e+02 Score=27.14 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=41.1
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
...||.+.||+.+|+|..-+=+.|.+|...|-+.-..|.....|....
T Consensus 19 ~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTe 66 (217)
T PRK14165 19 TVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITE 66 (217)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECH
Confidence 447899999999999999999999999999999988886555566554
No 321
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.96 E-value=4e+02 Score=23.37 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=44.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE--E--eccCCc-EEEeccCCChhHHHHHHHHHHHHHHHHH
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--K--IDRPAG-IINFARNKDPGEILNEWSASLNELMKLV 433 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a--k--IDq~~g-iV~f~~~~~~~~~l~~W~~~i~~ll~~v 433 (452)
..-++=+.||+.+|++..++-+.|..|-.+|.+.+ + -|..+| ...+-|.=+.....+.--..+..+...+
T Consensus 13 ~~~~~dedLa~~l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~yw~i~y~~~~~vik~r~~~~~~~L 87 (147)
T smart00531 13 NGCVTEEDLAELLGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRYYWYINYDTLLDVVKYKLDKMRKRL 87 (147)
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999776522 2 344456 4554443222233333334444444433
No 322
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=20.94 E-value=7.7e+02 Score=23.85 Aligned_cols=61 Identities=21% Similarity=0.085 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH---------H--HHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQ---------E--LQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQI 202 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~---------~--l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~ 202 (452)
.+-..+|.++.++|++.+|-.-+- . +..+....-.+.+.--|+.+-+=-|+..+|..-|..
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 455555666666666655543221 0 111112222233444444444555778888887764
No 323
>KOG2796|consensus
Probab=20.44 E-value=8.6e+02 Score=24.24 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhh---hhhccCCCCch
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN---TKFFDDEKDDV 219 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~---~~~~~~~~~~~ 219 (452)
+.--++..+...|+|.=..+++.++-. -+..++--.+=--+|+....||..-|+++..++. .+. ++..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~-- 250 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQG-- 250 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccch--
Confidence 335568888899999999999988653 1234555566667999999999999999988653 333 33222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
++--..-++.+|...+||-+|.+-|.++..+...
T Consensus 251 ---~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~ 284 (366)
T KOG2796|consen 251 ---KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR 284 (366)
T ss_pred ---hHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence 4444455688999999999999999999877543
No 324
>KOG0543|consensus
Probab=20.42 E-value=9.9e+02 Score=24.93 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
+.-+-+.||-.+.+.++|.+|......+. |.. +.+. .-+++.-+.++..++|..|....+|+...- |++
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL-e~~---~~N~--KALyRrG~A~l~~~e~~~A~~df~ka~k~~---P~N-- 324 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVL-ELD---PNNV--KALYRRGQALLALGEYDLARDDFQKALKLE---PSN-- 324 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHH-hcC---CCch--hHHHHHHHHHHhhccHHHHHHHHHHHHHhC---CCc--
Confidence 44566788889999999999988776654 321 2223 357788889999999999999999987764 444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHcCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLAT-CKHYRAILTTPC 255 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea-~~~y~e~~~t~~ 255 (452)
.+.+..+..+... .+.|.+. -+.|..+|...+
T Consensus 325 ka~~~el~~l~~k----~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 325 KAARAELIKLKQK----IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccc
Confidence 5566655444443 3333433 445555554443
No 325
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=20.38 E-value=2.3e+02 Score=27.67 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
|..+.+-...++...||+.||+|+.-+-+-|..|=..|.+.
T Consensus 22 Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 22 IIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 33344447779999999999999999999999998888775
No 326
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.03 E-value=4.8e+02 Score=21.14 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTY 109 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~ 109 (452)
+|.+..++.=|+..||++.....+..|.-. ++...-|..+|..+++.
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~ 48 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEE 48 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhc
Confidence 356777788888888888888887776444 45555556666666654
Done!