Query psy292
Match_columns 452
No_of_seqs 198 out of 712
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:59:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 6.1E-97 2E-101 771.5 28.7 442 6-451 1-444 (445)
2 3txn_A 26S proteasome regulato 100.0 1E-47 3.6E-52 391.5 34.9 358 64-436 21-393 (394)
3 4b4t_Q 26S proteasome regulato 100.0 9.3E-45 3.2E-49 369.8 33.0 410 23-447 5-434 (434)
4 4b4t_R RPN7, 26S proteasome re 100.0 1.9E-45 6.4E-50 381.8 11.2 403 12-441 7-422 (429)
5 4b4t_O 26S proteasome regulato 99.9 9.5E-23 3.2E-27 208.8 19.9 284 146-440 81-391 (393)
6 4b4t_S RPN3, 26S proteasome re 99.8 1.6E-20 5.6E-25 195.1 17.8 248 176-439 226-478 (523)
7 1ufm_A COP9 complex subunit 4; 99.8 1.4E-21 4.8E-26 155.8 4.2 73 342-414 6-78 (84)
8 3t5x_A PCI domain-containing p 99.5 5.6E-14 1.9E-18 130.8 13.9 172 221-413 11-194 (203)
9 3t5v_B Nuclear mRNA export pro 99.4 1.4E-11 4.8E-16 127.4 20.2 246 154-412 139-429 (455)
10 3chm_A COP9 signalosome comple 98.5 2.1E-06 7.2E-11 77.0 13.1 132 267-415 26-160 (169)
11 3ro2_A PINS homolog, G-protein 98.3 0.002 6.8E-08 60.6 30.5 224 24-254 7-253 (338)
12 3ro2_A PINS homolog, G-protein 98.2 0.00044 1.5E-08 65.2 23.9 221 28-253 49-292 (338)
13 3sf4_A G-protein-signaling mod 98.2 0.0011 3.9E-08 64.7 26.5 112 140-254 186-297 (406)
14 3sf4_A G-protein-signaling mod 98.1 0.0012 4E-08 64.6 25.9 113 140-255 226-338 (406)
15 4a1s_A PINS, partner of inscut 98.1 0.0015 5.2E-08 64.5 25.9 224 24-253 50-332 (411)
16 4a1s_A PINS, partner of inscut 98.0 0.0016 5.5E-08 64.3 25.2 113 140-255 262-374 (411)
17 3ulq_A Response regulator aspa 98.0 0.0049 1.7E-07 60.8 27.7 216 28-250 109-332 (383)
18 3nf1_A KLC 1, kinesin light ch 98.0 0.0025 8.4E-08 59.7 23.9 224 24-252 29-306 (311)
19 4b0z_A RPN12, 26S proteasome r 98.0 0.00075 2.6E-08 63.4 19.8 199 189-411 15-228 (229)
20 3q15_A PSP28, response regulat 97.8 0.016 5.5E-07 57.0 28.0 176 32-211 111-291 (378)
21 2ifu_A Gamma-SNAP; membrane fu 97.8 0.014 4.9E-07 56.0 27.0 188 56-251 30-222 (307)
22 3edt_B KLC 2, kinesin light ch 97.8 0.0087 3E-07 54.8 23.6 194 56-253 37-281 (283)
23 3ro3_A PINS homolog, G-protein 97.5 0.02 6.7E-07 47.3 20.3 156 56-253 3-158 (164)
24 3gw4_A Uncharacterized protein 97.5 0.03 1E-06 48.9 21.8 178 33-259 3-182 (203)
25 3qky_A Outer membrane assembly 97.5 0.044 1.5E-06 50.6 23.9 182 23-255 16-226 (261)
26 3uq3_A Heat shock protein STI1 97.4 0.042 1.4E-06 49.5 22.6 204 24-253 7-236 (258)
27 3u3w_A Transcriptional activat 97.4 0.019 6.5E-07 54.5 20.5 110 140-253 154-266 (293)
28 3nf1_A KLC 1, kinesin light ch 97.3 0.055 1.9E-06 50.3 22.2 193 55-252 20-223 (311)
29 3ro3_A PINS homolog, G-protein 97.2 0.014 4.7E-07 48.3 15.5 112 139-253 7-118 (164)
30 1qqe_A Vesicular transport pro 97.2 0.13 4.3E-06 48.8 23.8 209 33-250 48-266 (292)
31 3q15_A PSP28, response regulat 97.1 0.12 4.1E-06 50.6 23.9 188 64-256 103-293 (378)
32 2ho1_A Type 4 fimbrial biogene 97.1 0.14 4.7E-06 46.3 22.3 200 25-254 40-239 (252)
33 2yhc_A BAMD, UPF0169 lipoprote 97.1 0.066 2.3E-06 48.5 19.9 181 24-210 6-213 (225)
34 2ifu_A Gamma-SNAP; membrane fu 97.0 0.25 8.7E-06 47.0 24.6 171 33-208 47-222 (307)
35 3hym_B Cell division cycle pro 97.0 0.17 5.9E-06 47.2 22.8 201 22-253 22-222 (330)
36 3ulq_A Response regulator aspa 97.0 0.21 7.1E-06 48.8 24.0 111 139-253 141-253 (383)
37 3edt_B KLC 2, kinesin light ch 97.0 0.092 3.1E-06 47.8 20.2 179 29-209 50-280 (283)
38 2qfc_A PLCR protein; TPR, HTH, 96.9 0.092 3.1E-06 49.6 20.3 189 25-217 78-272 (293)
39 2y4t_A DNAJ homolog subfamily 96.8 0.19 6.4E-06 49.7 22.2 106 142-253 212-324 (450)
40 2q7f_A YRRB protein; TPR, prot 96.8 0.065 2.2E-06 48.0 17.2 198 25-254 26-223 (243)
41 2y4t_A DNAJ homolog subfamily 96.8 0.45 1.6E-05 46.9 27.6 204 24-252 28-239 (450)
42 4eqf_A PEX5-related protein; a 96.8 0.15 5.3E-06 49.0 20.7 208 24-254 67-277 (365)
43 1qqe_A Vesicular transport pro 96.7 0.41 1.4E-05 45.2 25.7 190 58-253 33-228 (292)
44 3ieg_A DNAJ homolog subfamily 96.7 0.4 1.4E-05 45.1 29.7 206 29-255 127-337 (359)
45 3u3w_A Transcriptional activat 96.7 0.061 2.1E-06 50.9 16.9 169 81-253 6-184 (293)
46 4eqf_A PEX5-related protein; a 96.7 0.19 6.6E-06 48.3 20.7 198 30-253 107-310 (365)
47 3u4t_A TPR repeat-containing p 96.7 0.19 6.5E-06 45.8 19.7 61 24-90 5-65 (272)
48 4gcn_A Protein STI-1; structur 96.6 0.07 2.4E-06 44.0 14.7 107 140-254 7-113 (127)
49 2xpi_A Anaphase-promoting comp 96.6 0.54 1.8E-05 48.3 24.8 269 29-333 312-582 (597)
50 1fch_A Peroxisomal targeting s 96.6 0.37 1.3E-05 45.9 22.1 202 25-253 67-314 (368)
51 1elr_A TPR2A-domain of HOP; HO 96.5 0.15 5E-06 40.4 15.9 106 141-254 4-109 (131)
52 2qfc_A PLCR protein; TPR, HTH, 96.5 0.27 9.2E-06 46.3 20.0 109 143-253 117-225 (293)
53 3gw4_A Uncharacterized protein 96.5 0.17 5.8E-06 43.9 17.2 112 140-254 25-137 (203)
54 3mkr_A Coatomer subunit epsilo 96.4 0.7 2.4E-05 43.8 24.5 191 27-254 4-196 (291)
55 3cv0_A Peroxisome targeting si 96.3 0.67 2.3E-05 43.0 23.6 201 24-253 23-269 (327)
56 3uq3_A Heat shock protein STI1 96.3 0.49 1.7E-05 42.2 19.8 171 26-210 42-236 (258)
57 3vtx_A MAMA; tetratricopeptide 96.3 0.24 8.3E-06 42.5 16.7 159 28-210 11-170 (184)
58 2xpi_A Anaphase-promoting comp 96.2 0.36 1.2E-05 49.7 20.7 103 143-254 477-580 (597)
59 1w3b_A UDP-N-acetylglucosamine 96.2 0.95 3.2E-05 43.8 25.3 196 26-253 3-198 (388)
60 3hym_B Cell division cycle pro 96.2 0.38 1.3E-05 44.8 18.9 104 142-254 194-300 (330)
61 3vtx_A MAMA; tetratricopeptide 96.2 0.43 1.5E-05 40.9 17.9 166 62-253 5-170 (184)
62 2gw1_A Mitochondrial precursor 96.1 0.32 1.1E-05 48.6 18.9 101 145-254 376-479 (514)
63 2pl2_A Hypothetical conserved 96.0 0.25 8.4E-06 44.5 16.0 194 25-250 8-211 (217)
64 3n71_A Histone lysine methyltr 96.0 0.24 8.1E-06 51.5 17.7 147 24-210 311-464 (490)
65 3ieg_A DNAJ homolog subfamily 95.8 1.3 4.3E-05 41.5 31.6 175 142-333 155-338 (359)
66 1hz4_A MALT regulatory protein 95.7 1.6 5.5E-05 41.9 26.8 219 28-254 20-245 (373)
67 3fp2_A TPR repeat-containing p 95.7 0.76 2.6E-05 46.3 19.7 188 37-253 217-407 (537)
68 2gw1_A Mitochondrial precursor 95.6 0.68 2.3E-05 46.2 19.1 192 35-253 202-401 (514)
69 3fp2_A TPR repeat-containing p 95.6 0.83 2.9E-05 46.0 19.8 53 30-89 251-303 (537)
70 4b4t_Q 26S proteasome regulato 95.6 0.46 1.6E-05 46.7 17.3 109 142-253 96-204 (434)
71 4ga2_A E3 SUMO-protein ligase 95.5 0.16 5.6E-06 43.0 11.9 94 146-254 2-95 (150)
72 2vq2_A PILW, putative fimbrial 95.5 1.2 3.9E-05 38.8 22.0 170 61-254 7-177 (225)
73 1hz4_A MALT regulatory protein 95.3 2.1 7.3E-05 41.0 24.4 214 31-253 62-282 (373)
74 1xnf_A Lipoprotein NLPI; TPR, 95.2 1.7 5.7E-05 39.2 21.0 200 35-254 18-245 (275)
75 2ho1_A Type 4 fimbrial biogene 95.2 1.6 5.6E-05 38.9 22.0 169 62-254 37-205 (252)
76 4i17_A Hypothetical protein; T 95.1 0.62 2.1E-05 41.5 15.3 139 63-253 8-146 (228)
77 3as5_A MAMA; tetratricopeptide 95.1 1.2 4.1E-05 37.1 18.9 162 26-253 12-173 (186)
78 2xev_A YBGF; tetratricopeptide 95.0 0.6 2E-05 37.2 13.5 102 145-255 6-107 (129)
79 1w3b_A UDP-N-acetylglucosamine 95.0 2.7 9.2E-05 40.5 26.0 163 145-334 207-372 (388)
80 4gco_A Protein STI-1; structur 94.9 0.93 3.2E-05 37.0 14.4 101 139-254 11-111 (126)
81 3mkr_A Coatomer subunit epsilo 94.8 2.7 9.2E-05 39.6 20.1 53 28-89 40-92 (291)
82 1fch_A Peroxisomal targeting s 94.8 1.6 5.4E-05 41.5 18.0 207 29-251 105-357 (368)
83 3qky_A Outer membrane assembly 94.8 1.1 3.9E-05 40.8 16.3 105 142-255 16-128 (261)
84 1elw_A TPR1-domain of HOP; HOP 94.8 0.87 3E-05 34.9 13.5 99 141-254 4-102 (118)
85 2q7f_A YRRB protein; TPR, prot 94.7 1.3 4.6E-05 39.0 16.3 161 28-211 63-223 (243)
86 2vq2_A PILW, putative fimbrial 94.7 2 6.7E-05 37.2 25.9 198 25-251 11-209 (225)
87 3u4t_A TPR repeat-containing p 94.5 2.6 8.9E-05 38.0 18.7 240 63-333 4-253 (272)
88 2dba_A Smooth muscle cell asso 94.5 1.1 3.8E-05 36.1 14.0 101 142-254 29-129 (148)
89 2vyi_A SGTA protein; chaperone 94.3 1.4 4.9E-05 34.3 14.1 100 140-254 11-110 (131)
90 3sz7_A HSC70 cochaperone (SGT) 94.1 0.81 2.8E-05 38.6 12.8 101 140-255 10-110 (164)
91 3rkv_A Putative peptidylprolyl 94.1 1.1 3.7E-05 37.7 13.4 105 140-253 10-126 (162)
92 1a17_A Serine/threonine protei 94.0 1.4 4.9E-05 36.3 14.0 100 140-254 12-111 (166)
93 3upv_A Heat shock protein STI1 94.0 1.6 5.3E-05 34.8 13.7 98 141-253 4-101 (126)
94 3as5_A MAMA; tetratricopeptide 93.7 2.6 9E-05 34.9 20.2 127 28-211 48-174 (186)
95 2lni_A Stress-induced-phosphop 93.6 0.86 2.9E-05 36.0 11.3 97 143-254 18-114 (133)
96 4ga2_A E3 SUMO-protein ligase 93.6 0.38 1.3E-05 40.6 9.5 98 140-252 30-128 (150)
97 4abn_A Tetratricopeptide repea 93.4 6.5 0.00022 39.8 20.3 192 29-250 109-318 (474)
98 3mv2_B Coatomer subunit epsilo 93.4 0.55 1.9E-05 45.7 11.4 185 28-255 19-209 (310)
99 3q49_B STIP1 homology and U bo 93.3 2 7E-05 34.3 13.4 97 142-253 10-106 (137)
100 4i17_A Hypothetical protein; T 93.2 4.1 0.00014 35.9 21.7 160 24-196 9-168 (228)
101 2xcb_A PCRH, regulatory protei 93.1 1.6 5.4E-05 36.0 12.6 97 142-253 19-115 (142)
102 3qwp_A SET and MYND domain-con 93.1 2.9 9.9E-05 42.3 16.8 108 24-168 289-398 (429)
103 2vgx_A Chaperone SYCD; alterna 92.9 1.7 5.9E-05 36.4 12.6 98 141-253 21-118 (148)
104 3qww_A SET and MYND domain-con 92.8 1.5 5.3E-05 44.5 14.2 107 25-168 301-409 (433)
105 1a17_A Serine/threonine protei 92.8 3.5 0.00012 33.8 18.6 132 61-250 12-143 (166)
106 2pl2_A Hypothetical conserved 92.8 3.9 0.00013 36.3 15.6 165 63-254 6-181 (217)
107 3lpz_A GET4 (YOR164C homolog); 92.7 6.9 0.00024 38.3 18.0 139 22-163 12-158 (336)
108 2r5s_A Uncharacterized protein 92.7 3.5 0.00012 35.1 14.6 166 23-210 7-173 (176)
109 2xev_A YBGF; tetratricopeptide 92.6 2.3 7.9E-05 33.5 12.6 100 25-169 5-104 (129)
110 2fbn_A 70 kDa peptidylprolyl i 92.6 1.8 6.1E-05 37.7 12.8 104 140-253 37-151 (198)
111 1hxi_A PEX5, peroxisome target 92.6 1.9 6.7E-05 34.7 12.1 94 145-253 21-114 (121)
112 1na0_A Designed protein CTPR3; 92.6 2.8 9.5E-05 32.2 13.4 98 142-254 10-107 (125)
113 2vsy_A XCC0866; transferase, g 92.5 3.4 0.00012 42.6 16.9 153 36-254 3-158 (568)
114 2e2e_A Formate-dependent nitri 92.5 4.4 0.00015 34.2 16.1 98 143-255 46-146 (177)
115 2kck_A TPR repeat; tetratricop 92.3 1.7 5.7E-05 32.9 10.9 98 145-255 10-108 (112)
116 4abn_A Tetratricopeptide repea 92.2 7.5 0.00026 39.3 18.7 210 140-376 101-327 (474)
117 3qou_A Protein YBBN; thioredox 92.0 3.1 0.0001 39.0 14.5 163 25-209 120-283 (287)
118 1hh8_A P67PHOX, NCF-2, neutrop 92.0 3.7 0.00012 35.6 14.2 133 25-211 9-151 (213)
119 3n71_A Histone lysine methyltr 91.9 2.2 7.6E-05 44.0 14.2 106 145-251 313-420 (490)
120 1wi9_A Protein C20ORF116 homol 91.8 0.52 1.8E-05 35.4 6.6 53 359-411 14-66 (72)
121 3gyz_A Chaperone protein IPGC; 91.7 2.9 9.8E-05 35.6 12.7 100 140-254 35-134 (151)
122 3urz_A Uncharacterized protein 91.6 6.6 0.00023 34.5 20.6 173 22-255 4-188 (208)
123 1ihg_A Cyclophilin 40; ppiase 91.5 2 6.7E-05 42.4 12.9 105 140-254 222-337 (370)
124 2fo7_A Synthetic consensus TPR 91.3 3.5 0.00012 31.9 12.1 94 145-253 5-98 (136)
125 2yhc_A BAMD, UPF0169 lipoprote 91.2 7.7 0.00026 34.4 20.1 185 62-255 4-215 (225)
126 4gyw_A UDP-N-acetylglucosamine 90.6 5.7 0.00019 43.0 16.5 164 62-251 9-172 (723)
127 3cv0_A Peroxisome targeting si 90.0 11 0.00039 34.4 23.5 205 30-251 63-313 (327)
128 3urz_A Uncharacterized protein 89.9 5.1 0.00017 35.2 13.1 95 145-254 8-118 (208)
129 1p5q_A FKBP52, FK506-binding p 89.6 4.6 0.00016 38.9 13.5 105 140-254 146-260 (336)
130 3qww_A SET and MYND domain-con 89.3 5.1 0.00017 40.6 14.0 100 152-252 309-410 (433)
131 4gyw_A UDP-N-acetylglucosamine 89.2 6.9 0.00024 42.4 15.8 97 142-253 10-106 (723)
132 1kt0_A FKBP51, 51 kDa FK506-bi 89.0 5.5 0.00019 40.2 14.1 105 140-254 267-381 (457)
133 1hh8_A P67PHOX, NCF-2, neutrop 88.7 3.8 0.00013 35.5 11.2 104 143-255 39-152 (213)
134 1xnf_A Lipoprotein NLPI; TPR, 88.4 3.3 0.00011 37.2 10.9 100 140-254 42-141 (275)
135 2wpv_A GET4, UPF0363 protein Y 88.1 20 0.00067 34.7 21.1 181 22-205 13-212 (312)
136 2c2l_A CHIP, carboxy terminus 87.9 4.6 0.00016 37.7 11.8 96 143-253 6-101 (281)
137 1sfx_A Conserved hypothetical 87.3 5 0.00017 31.2 10.0 67 364-432 32-100 (109)
138 1qgp_A Protein (double strande 86.8 3 0.0001 31.5 8.0 50 354-403 16-68 (77)
139 4g1t_A Interferon-induced prot 86.7 25 0.00085 34.4 17.3 111 140-254 50-168 (472)
140 3k9i_A BH0479 protein; putativ 86.7 3.5 0.00012 32.4 8.9 90 153-254 2-91 (117)
141 1rz4_A Eukaryotic translation 85.9 3.5 0.00012 38.1 9.4 92 297-410 97-190 (226)
142 2l6j_A TPR repeat-containing p 85.7 9.7 0.00033 28.7 11.8 89 143-240 6-94 (111)
143 3qou_A Protein YBBN; thioredox 85.4 15 0.0005 34.2 13.9 97 143-254 119-215 (287)
144 3qwp_A SET and MYND domain-con 85.4 8.2 0.00028 38.9 12.8 98 151-252 297-399 (429)
145 4f3v_A ESX-1 secretion system 84.8 7.9 0.00027 36.9 11.6 102 139-254 100-201 (282)
146 1xn7_A Hypothetical protein YH 84.7 1.6 5.3E-05 33.4 5.3 41 357-397 7-47 (78)
147 1elr_A TPR2A-domain of HOP; HO 84.2 12 0.00042 28.6 14.0 104 62-210 4-108 (131)
148 3ffl_A Anaphase-promoting comp 84.2 13 0.00044 32.6 11.6 126 24-170 22-151 (167)
149 2k02_A Ferrous iron transport 84.2 1.7 5.7E-05 34.1 5.3 43 357-399 7-49 (87)
150 1ihg_A Cyclophilin 40; ppiase 83.8 33 0.0011 33.3 16.3 114 63-211 224-337 (370)
151 1xi4_A Clathrin heavy chain; a 83.4 43 0.0015 39.2 18.5 50 146-209 1200-1249(1630)
152 4gcn_A Protein STI-1; structur 83.4 16 0.00054 29.3 14.7 103 63-210 9-112 (127)
153 1ub9_A Hypothetical protein PH 82.9 7.1 0.00024 30.0 8.8 67 364-432 28-97 (100)
154 2pzi_A Probable serine/threoni 82.6 14 0.00049 39.2 13.9 160 33-253 402-563 (681)
155 1qbj_A Protein (double-strande 82.4 2.6 8.8E-05 32.4 5.7 50 354-403 12-64 (81)
156 4gco_A Protein STI-1; structur 81.9 18 0.00062 28.9 15.1 99 61-210 12-110 (126)
157 2fo7_A Synthetic consensus TPR 81.9 15 0.00051 28.0 17.8 124 29-209 8-131 (136)
158 2xcb_A PCRH, regulatory protei 81.4 20 0.00067 29.0 15.3 115 61-228 17-131 (142)
159 2pzi_A Probable serine/threoni 81.0 11 0.00039 40.0 12.4 162 152-333 402-566 (681)
160 2if4_A ATFKBP42; FKBP-like, al 80.6 7.1 0.00024 37.6 9.7 105 140-253 178-293 (338)
161 2e2e_A Formate-dependent nitri 80.1 1.9 6.4E-05 36.6 4.8 123 32-211 20-145 (177)
162 2vgx_A Chaperone SYCD; alterna 79.9 24 0.00082 29.0 14.8 100 61-211 20-119 (148)
163 3ma5_A Tetratricopeptide repea 79.7 11 0.00039 28.6 9.0 64 142-211 8-71 (100)
164 4b4t_R RPN7, 26S proteasome re 79.6 53 0.0018 32.8 20.6 59 140-199 207-265 (429)
165 1p5q_A FKBP52, FK506-binding p 79.5 43 0.0015 31.8 19.4 143 61-250 146-291 (336)
166 2vsy_A XCC0866; transferase, g 79.4 12 0.00042 38.3 11.7 98 142-254 24-121 (568)
167 1xi4_A Clathrin heavy chain; a 79.0 1.1E+02 0.0037 36.0 23.2 161 29-207 992-1160(1630)
168 1na3_A Designed protein CTPR2; 77.8 14 0.00048 26.6 8.7 66 179-253 7-72 (91)
169 2kat_A Uncharacterized protein 76.6 23 0.0008 27.1 10.2 63 143-211 21-83 (115)
170 3q49_B STIP1 homology and U bo 76.6 25 0.00086 27.5 12.0 99 62-211 9-107 (137)
171 2fbn_A 70 kDa peptidylprolyl i 76.6 31 0.0011 29.4 11.9 139 62-244 38-176 (198)
172 1r7j_A Conserved hypothetical 76.5 15 0.00051 28.7 8.7 60 367-429 21-80 (95)
173 4b4t_T 26S proteasome regulato 75.6 38 0.0013 31.9 12.9 134 261-412 100-238 (274)
174 2kc7_A BFR218_protein; tetratr 75.6 20 0.0007 26.5 9.3 61 145-211 4-65 (99)
175 3k9i_A BH0479 protein; putativ 75.5 17 0.00058 28.2 9.1 66 140-211 26-91 (117)
176 3gyz_A Chaperone protein IPGC; 75.5 35 0.0012 28.6 12.8 24 145-168 108-131 (151)
177 2jt1_A PEFI protein; solution 75.0 6.8 0.00023 29.7 6.0 34 365-398 23-56 (77)
178 1elw_A TPR1-domain of HOP; HOP 75.0 23 0.00079 26.3 12.6 94 24-168 6-99 (118)
179 3upv_A Heat shock protein STI1 74.9 27 0.00094 27.1 12.7 97 63-210 5-101 (126)
180 1hxi_A PEX5, peroxisome target 74.8 29 0.001 27.4 10.5 94 24-168 19-112 (121)
181 2heo_A Z-DNA binding protein 1 74.8 9 0.00031 27.9 6.5 34 365-398 24-57 (67)
182 2vyi_A SGTA protein; chaperone 74.6 25 0.00087 26.6 16.2 101 59-210 9-109 (131)
183 2fbh_A Transcriptional regulat 74.0 22 0.00077 28.9 9.8 44 362-405 48-91 (146)
184 3r0a_A Putative transcriptiona 73.9 25 0.00087 28.5 9.9 35 367-401 43-77 (123)
185 1na3_A Designed protein CTPR2; 73.6 22 0.00075 25.4 9.4 64 141-210 9-72 (91)
186 2lni_A Stress-induced-phosphop 73.2 29 0.00098 26.6 13.5 31 59-89 13-43 (133)
187 2fbi_A Probable transcriptiona 72.6 19 0.00064 29.2 8.9 43 364-406 48-90 (142)
188 2kck_A TPR repeat; tetratricop 72.3 15 0.00052 27.2 7.8 64 144-211 43-107 (112)
189 2hr2_A Hypothetical protein; a 72.0 48 0.0016 28.6 14.0 109 138-253 8-131 (159)
190 3rkv_A Putative peptidylprolyl 71.9 39 0.0014 27.6 18.0 118 61-211 10-127 (162)
191 1wao_1 Serine/threonine protei 71.7 11 0.00037 38.3 8.6 92 147-253 12-103 (477)
192 1jgs_A Multiple antibiotic res 71.7 20 0.0007 28.9 8.9 42 364-405 46-87 (138)
193 2nnn_A Probable transcriptiona 71.1 20 0.00067 29.0 8.7 42 364-405 50-91 (140)
194 1s3j_A YUSO protein; structura 70.9 21 0.00071 29.6 9.0 42 364-405 49-90 (155)
195 1kt0_A FKBP51, 51 kDa FK506-bi 70.9 33 0.0011 34.3 12.0 137 62-245 268-406 (457)
196 1lj9_A Transcriptional regulat 70.6 26 0.0009 28.5 9.5 42 364-405 41-82 (144)
197 3eco_A MEPR; mutlidrug efflux 70.6 25 0.00084 28.5 9.2 41 365-405 46-86 (139)
198 2gxg_A 146AA long hypothetical 70.4 23 0.00079 28.9 9.1 42 364-405 48-89 (146)
199 3bpv_A Transcriptional regulat 70.1 20 0.00068 29.0 8.5 43 364-406 41-83 (138)
200 3txn_A 26S proteasome regulato 69.0 95 0.0032 30.8 20.1 42 140-182 179-221 (394)
201 2frh_A SARA, staphylococcal ac 68.9 16 0.00056 29.6 7.6 67 365-433 52-121 (127)
202 1b89_A Protein (clathrin heavy 68.7 14 0.00049 37.6 8.5 185 29-254 39-237 (449)
203 3oop_A LIN2960 protein; protei 68.5 21 0.00071 29.2 8.3 47 364-410 49-98 (143)
204 3s2w_A Transcriptional regulat 68.3 22 0.00074 29.8 8.6 42 364-405 62-103 (159)
205 1z7u_A Hypothetical protein EF 68.2 21 0.00071 28.5 8.0 41 365-405 34-75 (112)
206 1ouv_A Conserved hypothetical 68.0 66 0.0023 28.6 23.6 187 26-253 10-215 (273)
207 4f3v_A ESX-1 secretion system 67.9 83 0.0028 29.7 13.8 133 25-210 105-237 (282)
208 2rdp_A Putative transcriptiona 67.9 26 0.0009 28.7 8.9 42 364-405 54-95 (150)
209 3bj6_A Transcriptional regulat 67.9 23 0.00078 29.2 8.5 43 363-405 51-93 (152)
210 3bja_A Transcriptional regulat 67.8 20 0.00069 28.9 8.1 42 364-405 45-86 (139)
211 2htj_A P fimbrial regulatory p 67.5 15 0.00053 27.3 6.6 34 365-398 13-46 (81)
212 2d1h_A ST1889, 109AA long hypo 67.4 39 0.0013 25.8 9.9 41 364-404 34-74 (109)
213 2a61_A Transcriptional regulat 67.2 46 0.0016 26.9 10.3 43 364-406 45-87 (145)
214 3k0l_A Repressor protein; heli 66.8 25 0.00086 29.5 8.7 42 364-405 58-99 (162)
215 2ond_A Cleavage stimulation fa 66.8 79 0.0027 29.1 18.3 65 145-211 207-271 (308)
216 1ku9_A Hypothetical protein MJ 66.3 22 0.00075 29.0 8.1 41 365-405 40-80 (152)
217 3mv2_B Coatomer subunit epsilo 65.4 98 0.0033 29.6 20.3 167 29-211 107-283 (310)
218 4b8x_A SCO5413, possible MARR- 65.4 33 0.0011 28.5 9.1 42 364-405 49-90 (147)
219 4b4t_P 26S proteasome regulato 65.2 1.2E+02 0.004 30.4 18.7 71 139-209 175-246 (445)
220 2hr3_A Probable transcriptiona 64.9 31 0.0011 28.1 8.8 42 364-405 48-89 (147)
221 2nyx_A Probable transcriptiona 64.7 34 0.0012 29.0 9.2 42 364-405 57-98 (168)
222 2v5f_A Prolyl 4-hydroxylase su 64.3 23 0.0008 27.3 7.4 68 182-253 6-75 (104)
223 2eth_A Transcriptional regulat 63.7 34 0.0012 28.4 8.9 42 364-405 56-97 (154)
224 2ia0_A Putative HTH-type trans 62.7 30 0.001 30.0 8.5 43 361-403 26-71 (171)
225 3cjn_A Transcriptional regulat 62.5 39 0.0013 28.1 9.1 42 364-405 64-105 (162)
226 3g3z_A NMB1585, transcriptiona 62.4 22 0.00074 29.2 7.3 42 364-405 43-84 (145)
227 3f6o_A Probable transcriptiona 62.3 53 0.0018 26.2 9.5 77 365-443 30-107 (118)
228 2y75_A HTH-type transcriptiona 62.2 15 0.00053 30.0 6.2 43 365-407 25-67 (129)
229 3sz7_A HSC70 cochaperone (SGT) 62.2 63 0.0022 26.3 17.6 102 59-211 8-109 (164)
230 2v5f_A Prolyl 4-hydroxylase su 62.1 51 0.0018 25.3 11.8 68 143-211 7-76 (104)
231 3ech_A MEXR, multidrug resista 62.0 14 0.00049 30.2 6.0 42 364-405 49-90 (142)
232 1tbx_A ORF F-93, hypothetical 61.8 51 0.0017 25.1 9.0 67 364-432 20-90 (99)
233 3tgn_A ADC operon repressor AD 61.7 36 0.0012 27.7 8.6 44 361-405 47-90 (146)
234 2dba_A Smooth muscle cell asso 61.7 55 0.0019 25.5 16.4 103 61-211 27-129 (148)
235 2oqg_A Possible transcriptiona 61.6 35 0.0012 26.7 8.2 37 365-401 33-69 (114)
236 3bro_A Transcriptional regulat 61.1 36 0.0012 27.4 8.4 40 366-405 50-89 (141)
237 3cuo_A Uncharacterized HTH-typ 60.8 51 0.0017 24.8 8.8 39 364-402 36-74 (99)
238 3ma5_A Tetratricopeptide repea 60.7 40 0.0014 25.4 8.1 63 182-253 8-70 (100)
239 2cg4_A Regulatory protein ASNC 60.3 18 0.00061 30.4 6.4 42 362-403 18-62 (152)
240 3ffl_A Anaphase-promoting comp 60.1 42 0.0014 29.3 8.8 69 182-252 21-91 (167)
241 3f3x_A Transcriptional regulat 60.1 45 0.0015 27.1 8.9 41 364-405 49-89 (144)
242 3bdd_A Regulatory protein MARR 60.0 18 0.00061 29.4 6.3 42 364-405 43-84 (142)
243 2if4_A ATFKBP42; FKBP-like, al 59.4 18 0.00062 34.6 7.1 64 142-211 231-294 (338)
244 2c2l_A CHIP, carboxy terminus 59.1 73 0.0025 29.1 11.2 97 63-210 5-101 (281)
245 2cfx_A HTH-type transcriptiona 59.1 18 0.00062 30.1 6.2 44 360-403 13-59 (144)
246 2pex_A Transcriptional regulat 58.6 62 0.0021 26.5 9.6 42 364-405 59-100 (153)
247 2kc7_A BFR218_protein; tetratr 58.3 45 0.0015 24.4 8.0 62 185-254 4-65 (99)
248 3nqo_A MARR-family transcripti 58.2 49 0.0017 28.7 9.2 42 364-405 55-96 (189)
249 2dbb_A Putative HTH-type trans 58.2 18 0.0006 30.4 6.0 42 362-403 19-63 (151)
250 3deu_A Transcriptional regulat 58.1 38 0.0013 28.7 8.3 47 364-410 66-115 (166)
251 3e6m_A MARR family transcripti 57.2 38 0.0013 28.3 8.0 47 364-410 65-114 (161)
252 2hzt_A Putative HTH-type trans 56.5 56 0.0019 25.6 8.4 42 364-405 25-67 (107)
253 2p5v_A Transcriptional regulat 56.4 20 0.00069 30.5 6.2 44 360-403 18-64 (162)
254 1xd7_A YWNA; structural genomi 55.7 15 0.00053 30.9 5.2 48 357-406 15-62 (145)
255 3jth_A Transcription activator 55.6 46 0.0016 25.4 7.7 37 365-401 35-71 (98)
256 3cdh_A Transcriptional regulat 55.6 30 0.001 28.6 7.0 43 363-405 54-96 (155)
257 3t8r_A Staphylococcus aureus C 55.5 24 0.00083 29.6 6.4 51 357-407 17-69 (143)
258 2qww_A Transcriptional regulat 53.9 28 0.00097 28.7 6.6 42 364-405 53-96 (154)
259 3nrv_A Putative transcriptiona 53.6 27 0.00094 28.6 6.4 43 363-405 51-93 (148)
260 1na0_A Designed protein CTPR3; 53.4 66 0.0022 23.8 16.0 98 62-210 9-106 (125)
261 2bv6_A MGRA, HTH-type transcri 53.1 33 0.0011 27.8 6.8 42 364-405 49-90 (142)
262 2fa5_A Transcriptional regulat 52.8 31 0.0011 28.7 6.8 42 364-405 61-102 (162)
263 1ouv_A Conserved hypothetical 52.7 1.2E+02 0.0042 26.7 22.6 178 35-253 55-251 (273)
264 2w25_A Probable transcriptiona 52.3 27 0.00093 29.2 6.2 42 362-403 17-61 (150)
265 2v79_A DNA replication protein 52.2 21 0.0007 30.0 5.3 43 364-406 49-93 (135)
266 3hsr_A HTH-type transcriptiona 51.1 42 0.0014 27.3 7.1 42 364-405 48-89 (140)
267 3lwf_A LIN1550 protein, putati 51.0 44 0.0015 28.7 7.4 46 365-410 43-88 (159)
268 1wao_1 Serine/threonine protei 50.9 40 0.0014 34.0 8.3 94 142-248 41-134 (477)
269 2h6f_A Protein farnesyltransfe 50.6 1.8E+02 0.0063 28.1 13.8 93 145-252 101-194 (382)
270 1b89_A Protein (clathrin heavy 50.1 32 0.0011 34.9 7.3 169 64-251 124-309 (449)
271 3u2r_A Regulatory protein MARR 49.6 53 0.0018 27.6 7.8 41 365-405 61-101 (168)
272 4hbl_A Transcriptional regulat 49.4 47 0.0016 27.3 7.3 42 364-405 53-94 (149)
273 2e1c_A Putative HTH-type trans 48.8 19 0.00065 31.3 4.7 46 358-403 33-81 (171)
274 2kat_A Uncharacterized protein 47.5 88 0.003 23.6 8.7 63 182-253 20-82 (115)
275 1q1h_A TFE, transcription fact 46.9 25 0.00087 27.6 4.9 43 364-406 31-75 (110)
276 2qvo_A Uncharacterized protein 46.5 60 0.0021 24.7 7.0 44 367-410 31-74 (95)
277 3boq_A Transcriptional regulat 46.4 37 0.0013 28.1 6.2 44 362-405 58-101 (160)
278 3df8_A Possible HXLR family tr 46.4 36 0.0012 27.1 5.8 36 366-401 42-78 (111)
279 2r5s_A Uncharacterized protein 46.1 1.2E+02 0.0043 24.9 14.2 60 145-210 10-69 (176)
280 3l7w_A Putative uncharacterize 46.1 52 0.0018 25.9 6.7 66 371-436 31-98 (108)
281 2cyy_A Putative HTH-type trans 46.0 24 0.00082 29.6 4.8 41 362-402 17-60 (151)
282 3i4p_A Transcriptional regulat 45.5 22 0.00075 30.4 4.6 47 357-403 8-57 (162)
283 4aik_A Transcriptional regulat 44.6 1.2E+02 0.0042 25.0 9.2 45 361-405 41-85 (151)
284 3fm5_A Transcriptional regulat 44.4 42 0.0014 27.6 6.1 41 365-405 53-93 (150)
285 1i1g_A Transcriptional regulat 43.6 28 0.00095 28.6 4.8 36 363-398 15-50 (141)
286 4g1t_A Interferon-induced prot 43.6 2.3E+02 0.0078 27.2 21.7 26 143-168 249-274 (472)
287 3tqn_A Transcriptional regulat 43.3 53 0.0018 26.1 6.3 62 346-409 12-74 (113)
288 2ooe_A Cleavage stimulation fa 42.7 2.6E+02 0.009 27.7 16.2 52 153-210 403-454 (530)
289 1ucr_A Protein DSVD; dissimila 42.4 30 0.001 26.2 4.1 37 360-396 15-52 (78)
290 4g26_A Pentatricopeptide repea 42.0 2.9E+02 0.0098 27.9 19.0 173 64-254 28-205 (501)
291 2k9l_A RNA polymerase sigma fa 42.0 20 0.00069 26.8 3.3 26 364-389 46-71 (76)
292 1z91_A Organic hydroperoxide r 41.7 40 0.0014 27.4 5.6 42 364-405 52-93 (147)
293 2fxa_A Protease production reg 41.3 76 0.0026 28.0 7.7 42 364-405 60-101 (207)
294 2pi2_A Replication protein A 3 41.1 5.7 0.00019 37.6 0.0 38 365-402 223-261 (270)
295 1oyi_A Double-stranded RNA-bin 41.0 23 0.0008 27.1 3.5 32 367-398 31-62 (82)
296 2kko_A Possible transcriptiona 40.6 1.3E+02 0.0044 23.4 8.4 37 365-401 37-73 (108)
297 1wy6_A Hypothetical protein ST 40.4 1.7E+02 0.006 24.9 13.2 129 24-167 9-151 (172)
298 1pc2_A Mitochondria fission pr 40.1 1.3E+02 0.0045 25.6 8.6 66 141-210 32-100 (152)
299 3kp7_A Transcriptional regulat 39.7 42 0.0014 27.6 5.4 43 363-405 48-92 (151)
300 1ylf_A RRF2 family protein; st 38.7 56 0.0019 27.4 6.1 37 365-401 29-65 (149)
301 1ldd_A APC2WHB, anaphase promo 38.4 97 0.0033 23.1 6.5 36 363-398 19-65 (74)
302 4fhn_B Nucleoporin NUP120; pro 38.4 1E+02 0.0036 34.8 10.0 118 144-272 845-979 (1139)
303 2pn6_A ST1022, 150AA long hypo 38.2 37 0.0013 28.2 4.8 42 362-403 13-57 (150)
304 3k69_A Putative transcription 37.2 45 0.0015 28.7 5.2 43 365-407 27-69 (162)
305 2l6j_A TPR repeat-containing p 36.9 1.2E+02 0.0041 22.1 12.2 67 181-256 4-70 (111)
306 3jw4_A Transcriptional regulat 36.8 30 0.001 28.5 3.9 41 365-405 56-96 (148)
307 3mkq_A Coatomer beta'-subunit; 36.3 1.4E+02 0.0047 31.3 10.1 84 150-250 661-749 (814)
308 3neu_A LIN1836 protein; struct 35.4 65 0.0022 26.2 5.7 63 346-410 16-79 (125)
309 3e6c_C CPRK, cyclic nucleotide 35.3 23 0.00077 32.0 3.2 66 365-434 176-248 (250)
310 2qlz_A Transcription factor PF 34.6 80 0.0027 28.9 6.8 46 363-411 175-220 (232)
311 3by6_A Predicted transcription 34.3 71 0.0024 26.0 5.8 47 362-410 30-77 (126)
312 1z6r_A MLC protein; transcript 34.1 50 0.0017 32.5 5.8 47 352-398 13-62 (406)
313 4a5n_A Uncharacterized HTH-typ 33.1 1.4E+02 0.0046 24.7 7.4 62 364-425 37-106 (131)
314 2jpc_A SSRB; DNA binding prote 32.5 57 0.0019 22.3 4.3 29 363-391 10-38 (61)
315 1r1t_A Transcriptional repress 32.3 1.6E+02 0.0056 23.5 7.7 37 365-401 58-94 (122)
316 1u2w_A CADC repressor, cadmium 32.2 1.2E+02 0.004 24.3 6.8 36 364-399 54-89 (122)
317 1z05_A Transcriptional regulat 32.0 62 0.0021 32.1 6.1 47 352-398 36-85 (429)
318 2p7v_B Sigma-70, RNA polymeras 31.9 73 0.0025 22.4 4.9 29 364-392 23-51 (68)
319 1tc3_C Protein (TC3 transposas 31.9 67 0.0023 20.2 4.4 29 364-392 19-47 (51)
320 1xmk_A Double-stranded RNA-spe 31.7 60 0.0021 24.5 4.5 35 364-398 23-58 (79)
321 1r1u_A CZRA, repressor protein 31.4 1.2E+02 0.0042 23.4 6.6 37 365-401 38-74 (106)
322 1zbp_A Hypothetical protein VP 31.2 1.7E+02 0.0057 27.5 8.4 58 29-92 4-61 (273)
323 2h6f_A Protein farnesyltransfe 30.8 3.7E+02 0.013 25.9 20.3 95 145-254 135-230 (382)
324 2pg4_A Uncharacterized protein 30.8 1.2E+02 0.0042 22.7 6.4 32 366-397 30-62 (95)
325 2ff4_A Probable regulatory pro 30.7 1.7E+02 0.0059 28.5 9.0 71 135-211 165-235 (388)
326 3mkq_B Coatomer subunit alpha; 30.1 2.8E+02 0.0094 24.2 12.3 83 151-250 15-102 (177)
327 1y0u_A Arsenical resistance op 30.1 1.3E+02 0.0043 22.7 6.4 35 365-399 42-76 (96)
328 2f2e_A PA1607; transcription f 29.1 1.3E+02 0.0043 25.1 6.7 42 364-405 35-76 (146)
329 2p5k_A Arginine repressor; DNA 28.9 1.4E+02 0.0048 20.4 6.5 43 363-410 16-63 (64)
330 4b4t_O 26S proteasome regulato 28.8 4.1E+02 0.014 25.8 12.5 67 142-208 128-196 (393)
331 4ham_A LMO2241 protein; struct 28.7 2.3E+02 0.0079 22.9 8.8 63 346-410 17-80 (134)
332 1x3u_A Transcriptional regulat 28.6 1.3E+02 0.0044 21.5 5.9 30 363-392 28-57 (79)
333 2v9v_A Selenocysteine-specific 28.6 1.9E+02 0.0064 23.2 7.6 60 367-432 18-77 (135)
334 1uly_A Hypothetical protein PH 27.6 89 0.0031 27.5 5.7 35 365-399 32-66 (192)
335 2ek5_A Predicted transcription 27.2 1.1E+02 0.0036 25.1 5.7 46 362-409 23-69 (129)
336 1ku3_A Sigma factor SIGA; heli 27.1 64 0.0022 23.1 3.9 27 365-391 29-55 (73)
337 2x4h_A Hypothetical protein SS 26.6 85 0.0029 25.3 5.1 36 363-398 28-63 (139)
338 1nd9_A Translation initiation 26.5 47 0.0016 21.9 2.8 25 366-390 2-26 (49)
339 4g26_A Pentatricopeptide repea 26.3 5.1E+02 0.017 26.0 15.0 161 30-211 34-205 (501)
340 2gau_A Transcriptional regulat 26.1 1.3E+02 0.0046 26.1 6.7 33 365-397 179-211 (232)
341 3pqk_A Biofilm growth-associat 25.8 2.2E+02 0.0074 21.5 8.8 38 365-402 35-72 (102)
342 3rjv_A Putative SEL1 repeat pr 25.7 3.1E+02 0.011 23.3 15.2 143 141-309 18-172 (212)
343 1v4r_A Transcriptional repress 25.5 36 0.0012 26.4 2.3 46 363-410 31-77 (102)
344 2hoe_A N-acetylglucosamine kin 25.4 52 0.0018 32.1 4.1 51 347-398 12-65 (380)
345 4gns_B Protein CSD3, chitin bi 24.8 3.1E+02 0.01 29.7 10.2 59 180-247 336-394 (754)
346 2oz6_A Virulence factor regula 24.5 61 0.0021 27.8 3.9 32 366-397 164-195 (207)
347 3bhq_A Transcriptional regulat 24.4 72 0.0025 27.4 4.4 40 341-380 6-46 (211)
348 2k9m_A RNA polymerase sigma fa 24.2 53 0.0018 27.2 3.3 26 364-389 37-62 (130)
349 2vn2_A DNAD, chromosome replic 24.2 51 0.0018 26.9 3.2 35 367-401 52-86 (128)
350 2kvv_A Putative excisionase; D 24.2 1.4E+02 0.0046 22.6 5.1 55 366-425 10-69 (78)
351 2fsw_A PG_0823 protein; alpha- 23.8 2.5E+02 0.0085 21.6 8.0 42 364-405 36-78 (107)
352 1je8_A Nitrate/nitrite respons 23.8 1.1E+02 0.0038 22.6 4.8 29 363-391 33-61 (82)
353 1sfu_A 34L protein; protein/Z- 23.8 1.8E+02 0.0061 21.7 5.7 36 364-399 27-62 (75)
354 2o8x_A Probable RNA polymerase 23.6 93 0.0032 21.6 4.2 30 362-391 27-56 (70)
355 3t72_q RNA polymerase sigma fa 23.4 1E+02 0.0034 24.1 4.6 27 365-391 38-64 (99)
356 2h09_A Transcriptional regulat 23.2 2.6E+02 0.009 22.8 7.7 35 365-399 53-87 (155)
357 1tty_A Sigma-A, RNA polymerase 23.1 91 0.0031 23.3 4.2 27 365-391 37-63 (87)
358 2lnb_A Z-DNA-binding protein 1 23.1 2.1E+02 0.0072 21.6 5.9 40 358-397 26-65 (80)
359 2b0l_A GTP-sensing transcripti 22.8 1.1E+02 0.0038 23.9 4.8 48 362-409 38-86 (102)
360 3dv8_A Transcriptional regulat 22.8 69 0.0024 27.7 4.0 41 366-410 169-209 (220)
361 2fu4_A Ferric uptake regulatio 22.8 2.1E+02 0.0071 20.7 6.2 45 365-410 32-81 (83)
362 4ev0_A Transcription regulator 22.6 69 0.0024 27.6 3.9 34 364-397 161-194 (216)
363 3ryp_A Catabolite gene activat 22.6 70 0.0024 27.4 4.0 32 366-397 167-198 (210)
364 1ngr_A P75 low affinity neurot 22.4 64 0.0022 24.6 3.2 48 369-438 24-75 (85)
365 2lkp_A Transcriptional regulat 22.4 2.7E+02 0.0094 21.5 8.0 35 365-399 44-78 (119)
366 2zcw_A TTHA1359, transcription 22.4 72 0.0025 27.4 4.0 33 365-397 145-177 (202)
367 3e97_A Transcriptional regulat 22.2 72 0.0024 28.0 4.0 33 365-397 174-206 (231)
368 3mzy_A RNA polymerase sigma-H 22.2 2.1E+02 0.0073 23.0 6.9 32 360-391 118-149 (164)
369 1klx_A Cysteine rich protein B 22.1 3E+02 0.01 21.8 9.9 88 147-253 31-126 (138)
370 1okr_A MECI, methicillin resis 21.9 2.8E+02 0.0096 21.4 8.7 38 364-401 22-63 (123)
371 3bqo_A Telomeric repeat-bindin 21.8 4.3E+02 0.015 23.6 14.0 33 136-168 112-144 (211)
372 3hug_A RNA polymerase sigma fa 21.8 1.3E+02 0.0043 22.6 4.9 30 362-391 49-78 (92)
373 3d0s_A Transcriptional regulat 21.7 74 0.0025 27.8 4.0 32 366-397 177-208 (227)
374 3b02_A Transcriptional regulat 21.6 65 0.0022 27.5 3.5 32 366-397 139-170 (195)
375 3iwz_A CAP-like, catabolite ac 21.3 76 0.0026 27.7 4.0 32 366-397 187-218 (230)
376 1pc2_A Mitochondria fission pr 21.3 3.1E+02 0.011 23.2 7.6 63 24-90 34-99 (152)
377 3qbm_A TETR transcriptional re 21.3 1.1E+02 0.0039 25.3 5.0 35 346-380 6-41 (199)
378 1nzn_A CGI-135 protein, fissio 21.2 3.4E+02 0.012 22.2 10.2 63 24-90 37-102 (126)
379 3c57_A Two component transcrip 21.1 1.3E+02 0.0043 23.0 4.8 30 363-392 39-68 (95)
380 1fse_A GERE; helix-turn-helix 21.1 1.4E+02 0.0047 20.9 4.8 29 363-391 23-51 (74)
381 2fbk_A Transcriptional regulat 20.8 78 0.0027 26.9 3.9 40 366-405 86-125 (181)
382 4a5x_A MITD1, MIT domain-conta 20.8 2.8E+02 0.0095 21.0 7.1 32 220-251 12-43 (86)
383 2rnj_A Response regulator prot 20.7 1E+02 0.0036 23.1 4.2 30 363-392 41-70 (91)
384 3iuo_A ATP-dependent DNA helic 20.6 1.1E+02 0.0038 24.8 4.5 34 362-395 28-61 (122)
385 4b0z_A RPN12, 26S proteasome r 20.5 4.6E+02 0.016 23.4 10.3 92 147-242 14-115 (229)
386 3f8m_A GNTR-family protein tra 20.5 2.3E+02 0.0077 25.7 7.2 60 345-409 16-76 (248)
387 3la7_A Global nitrogen regulat 20.4 81 0.0028 28.1 4.0 32 366-397 193-224 (243)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-97 Score=771.46 Aligned_cols=442 Identities=39% Similarity=0.662 Sum_probs=358.4
Q ss_pred CCCCcccccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHH
Q psy292 6 GGTGRIVKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHI 85 (452)
Q Consensus 6 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~ 85 (452)
||++.|+|||+|||+++++++++|+.+++ |++++|++.|+.+||++|+++|+.|+++++.+|+++|++.|+|+.|++++
T Consensus 1 ms~~~~~k~e~D~s~~~~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 1 MSRDAPIKADKDYSQILKEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp ---------------------------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCccccccchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 89999999999999999999999999987 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy292 86 TMLTKRRSQLKQAVVKMIQECVTYVDKTPSK--EIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANI 163 (452)
Q Consensus 86 ~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~--~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~i 163 (452)
..|+++|||+|+++++||+.+++|++++|+. +.+..++++|+.+++||||||+||+|++.+||++|++.|++.+|+++
T Consensus 80 ~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~i 159 (445)
T 4b4t_P 80 TLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADI 159 (445)
T ss_dssp HHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999999999999999988864 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHH
Q psy292 164 IQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLAT 243 (452)
Q Consensus 164 L~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea 243 (452)
|+++++||+++|++.+|++++|+|+|+|++.+||++|..+++|++++++..+++ ++++++||.|+|+++.++++|++|
T Consensus 160 L~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 160 LCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY--ESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999988776666 999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHH
Q psy292 244 CKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQL 323 (452)
Q Consensus 244 ~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~ 323 (452)
|++|+++|++|.+.+|+.++..+|+++|+|.||+|++|++++++++++.+++++++|.|+.|+++|.+++|++|+.+...
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 99999999999998888888999999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccC
Q psy292 324 YEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 403 (452)
Q Consensus 324 ~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~ 403 (452)
|+..|.+|+++. ..+.+..||+.|+++++||||+++++||++|+|++||++||+|++++|..+++||.+|+|+|+||||
T Consensus 318 ~~~~L~~~~~~~-~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~ 396 (445)
T 4b4t_P 318 YEPVLNEDDLAF-GGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRP 396 (445)
T ss_dssp TCSSTTTCCSSC-CCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETT
T ss_pred HHHHhcccchhh-hcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 999999999874 3344567999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhchhhh
Q psy292 404 AGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRVA 451 (452)
Q Consensus 404 ~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~~~~~~~ 451 (452)
+|+|+|++++++++.|++|+++|++||+.|++++|+|+||+|||++.+
T Consensus 397 ~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~~~~~~ 444 (445)
T 4b4t_P 397 AKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEIMHGLQA 444 (445)
T ss_dssp TTEEEC------------------------------------------
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999864
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1e-47 Score=391.46 Aligned_cols=358 Identities=15% Similarity=0.159 Sum_probs=294.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhcCCCCH-HHHHHHHH-HH-HHhhcCcchHHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQAVVKMIQECVTYVDKTPSK-EIKVKLIE-TL-RTVTEGKIYVEVE 139 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~av~~~v~~~~~~~~~~~~~-~~~~~l~~-~L-~~~~e~ki~lE~e 139 (452)
++.+++++|++.|+++.+.++++.+++..+++ |++++|+|+.+++.++.+|+. +.++++|. ++ |+..+++.|+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl--- 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL--- 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 89999999999999999999999999999999 899999999999999999986 88899988 66 9999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh--ccCCCC
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF--FDDEKD 217 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~--~~~~~~ 217 (452)
|.++..+|+++|.+.|+|.+|.+++..+..|+.+.-+....+|+++.++++|+..+|+.+++..+.++.... +. .+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~ 175 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CP 175 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CC
Confidence 999999999999999999999999999999975544456999999999999999999999998888775432 22 23
Q ss_pred chHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhh-hhhc
Q psy292 218 DVQELKLKYYRLMIELDQ-HEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVL-EDKL 295 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~-~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~-~~~~ 295 (452)
|.++..++.+.|.+|. +.+||.+|+++|++++.+|+.. +.+++..+++|+++|+|++...++...++.... ....
T Consensus 176 --p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~-~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~ 252 (394)
T 3txn_A 176 --PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV-DSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYS 252 (394)
T ss_dssp --HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTC
T ss_pred --HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccC
Confidence 8999999999999999 8999999999999999998754 557889999999999999976555554443321 1123
Q ss_pred cCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHH
Q psy292 296 LNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDL 375 (452)
Q Consensus 296 ~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~l 375 (452)
.|++++|..|+.+|.++++..|...+..|.+.|..++.+ ..||..|++++++||++.+++||++|+|++||+.
T Consensus 253 ~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l-------~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 253 GRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIV-------QAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHH-------HHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHH-------HHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 467889999999999999988877666666656555554 3789999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC-------hhHHHHHHHHHHHHHHHHHHHH
Q psy292 376 LGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD-------PGEILNEWSASLNELMKLVNNT 436 (452)
Q Consensus 376 l~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~-------~~~~l~~W~~~i~~ll~~v~k~ 436 (452)
||+|++++|..|++||.+|+|+|+|||++|+|+|.++.+ ..+.+++|+..|+.|++...++
T Consensus 326 l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~~~ 393 (394)
T 3txn_A 326 IQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKKL 393 (394)
T ss_dssp HTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-------------------------------
T ss_pred HCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999987743 3468999999999999876654
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-45 Score=369.78 Aligned_cols=410 Identities=15% Similarity=0.203 Sum_probs=326.4
Q ss_pred hhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCch-----------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q psy292 23 DEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDM-----------VSTGRILVAIVQICFEAKNWTALNEHITMLTKR 91 (452)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~-----------~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~ 91 (452)
...+++|+.++++|++++|++.+..+++.++...|. .+..+++.+|+.+|++.|+|+.+.+++..+.+.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999988877765543 233458999999999999999999999999999
Q ss_pred hhhH-HHHHHHHHHHHHhhhcCCCCH-HHHHHHHH-HH-HHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy292 92 RSQL-KQAVVKMIQECVTYVDKTPSK-EIKVKLIE-TL-RTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 92 ~~q~-k~av~~~v~~~~~~~~~~~~~-~~~~~l~~-~L-~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l 167 (452)
++++ +..++++|+..++.+...++. +..+++++ ++ +....+..++ |+++...||.+|.+.|+|.+|..+++++
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL---KHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS---HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 9998 577889999999999988775 77778887 44 5666677776 9999999999999999999999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy292 168 QVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHY 247 (452)
Q Consensus 168 ~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y 247 (452)
..++.+.++...++++++.++|+|+..+|+++|..+++++.......+++ +.++..++.++|.++.+.++|.+|+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP--TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc--hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99998888889999999999999999999999999999998665444444 7889999999999999999999999999
Q ss_pred HHHHcCCCCCC---CHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhh--hhccCCchHHHHHHHHhcCCcccCchhHHH
Q psy292 248 RAILTTPCIQS---DPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE--DKLLNEIPLYKGLLQWFTNPELIKWSGLRQ 322 (452)
Q Consensus 248 ~e~~~t~~~~~---d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~--~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~ 322 (452)
.+++.++...+ ....+..++.++++|.++++........+..... ....+++|.+..+..+|.++++..|+....
T Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 319 (434)
T 4b4t_Q 240 FESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALK 319 (434)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 99998865432 2356778899999999999887776665554332 234567899999999999999988887777
Q ss_pred HHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 323 LYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 323 ~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
.|...+..++.+ ..||..+.+++++||++.+++||++|++++||+.||+|++++|..|++||.+|+|+|+|||
T Consensus 320 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~ 392 (434)
T 4b4t_Q 320 QYEKELMGDELT-------RSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQ 392 (434)
T ss_dssp HTHHHHTCSHHH-------HHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEET
T ss_pred HHHHHHcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceeccc
Confidence 777777655544 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhc
Q psy292 403 PAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIH 447 (452)
Q Consensus 403 ~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ke~~~~ 447 (452)
++|+|+|.++..+++.+++|.+.++++.+.|+. +++|..|+|
T Consensus 393 ~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~vd~---L~~ka~~ly 434 (434)
T 4b4t_Q 393 GNGWLYVYETPNQDATYDSALELVGQLNKVVDQ---LFEKASVLY 434 (434)
T ss_dssp TTTEEECC-------------------------------------
T ss_pred ccCeEeeCCCcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHhC
Confidence 999999988888888999999999999888875 689998887
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-45 Score=381.79 Aligned_cols=403 Identities=14% Similarity=0.145 Sum_probs=258.8
Q ss_pred cccccccchhhhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q psy292 12 VKMEVDYAPTCDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR 91 (452)
Q Consensus 12 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~ 91 (452)
.++|++|++.....+|.. +-|...+ .+......+++..|.++.+...++.......|+.+.+.+......
T Consensus 7 ~~~e~~y~d~~~~k~P~~---------~la~~~f-~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~ 76 (429)
T 4b4t_R 7 KSQEVEYVDPTVNRVPNY---------EVSEKAF-LLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQ 76 (429)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSC
T ss_pred hhhhccccCcccccCCCh---------HHHHHHH-HhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccc
Confidence 468888887655544432 2222222 223333334555666665555555443333344444433333344
Q ss_pred hhhHHHHHHHHHHHHHhhh----cCCCCH-HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy292 92 RSQLKQAVVKMIQECVTYV----DKTPSK-EIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQE 166 (452)
Q Consensus 92 ~~q~k~av~~~v~~~~~~~----~~~~~~-~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~ 166 (452)
.++.+.+.+..++....+. +.++.. +.+++-+++.....+++.+.|.|+.+....||++|++.||+++|++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~ 156 (429)
T 4b4t_R 77 SDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGK 156 (429)
T ss_dssp CSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555666666666655443 233322 34455555444445556677888999999999999999999999999999
Q ss_pred HHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy292 167 LQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKH 246 (452)
Q Consensus 167 l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~ 246 (452)
+..+|.+ .+.|++++|.++|++++.+||..+..+++|++..+ ..+++ |+++.+|+.|.|.++.+.++|.+|+++
T Consensus 157 ~~~~~~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~~~~d--~~~~~~lk~~~gl~~l~~r~f~~Aa~~ 230 (429)
T 4b4t_R 157 SLSKAIS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI-EKGGD--WERRNRYKTYYGIHCLAVRNFKEAAKL 230 (429)
T ss_dssp HHHHHTC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTCCC--THHHHHHHHHHHHGGGGTSCHHHHHHH
T ss_pred HHHhcCC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-hcCCC--HHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 9987754 47899999999999999999999999999999887 44566 999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhc-------cCCchHHHHHHHHhcCCcccCc-h
Q psy292 247 YRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKL-------LNEIPLYKGLLQWFTNPELIKW-S 318 (452)
Q Consensus 247 y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~-------~~~ip~~~~L~~~f~~~~Li~~-~ 318 (452)
|++++.||+..+. .....++.|.++|+++++ .|+++..++..++. .|.++.+..++.+|.++....| .
T Consensus 231 f~e~~~t~~~~e~-~~~~~~~~y~~l~al~~~---~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~ 306 (429)
T 4b4t_R 231 LVDSLATFTSIEL-TSYESIATYASVTGLFTL---ERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFP 306 (429)
T ss_dssp HHHHHHHSCCSCH-HHHHHHHHHHHHHHHHTT---CHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhccCCccch-hhHHHHHHHHHHHHHhcC---CHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHH
Confidence 9999999988643 455666777777777764 45566666655432 2345567778888877755443 2
Q ss_pred hHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 319 GLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 319 ~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
.....+...+..++.+. .||..|.+++++||++.+++||++|+|++||++||+|++++|+.|++||.+|+|+|
T Consensus 307 ~~l~~~~~~l~~d~~l~-------~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~a 379 (429)
T 4b4t_R 307 YLLETYANVLIPCKYLN-------RHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNC 379 (429)
T ss_dssp HHHHHHSTTTTTCTTST-------TTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCE
T ss_pred HHHHHHHhhhccCHHHH-------HHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEE
Confidence 23344445555555553 68999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcEEEeccCCChhHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy292 399 KIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLIN 441 (452)
Q Consensus 399 kIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~~~lI~ 441 (452)
+|||++|+|++.+|++++..++.|.++++.|+++++|++++|.
T Consensus 380 kID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 380 VIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp EEETTTTEEEECC------------------------------
T ss_pred EEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999885
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.5e-23 Score=208.77 Aligned_cols=284 Identities=12% Similarity=0.127 Sum_probs=191.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhc---cC--------cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccC
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETY---GS--------MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDD 214 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~---~~--------~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~ 214 (452)
.+........|..+|.+.|.++..... +. -.....+-+.+.++|+|+..+|...|+.+++++...+..
T Consensus 81 ~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~- 159 (393)
T 4b4t_O 81 YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDK- 159 (393)
T ss_dssp TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-
Confidence 345566778899999999998754321 10 112356778889999999999999999999999987643
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhh
Q psy292 215 EKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQ--SDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE 292 (452)
Q Consensus 215 ~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~--~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~ 292 (452)
.++..+.....||...+.|+...++|-++++++...+.+.+.. .++.++......+++|++++|..+...+++..+..
T Consensus 160 ~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i 239 (393)
T 4b4t_O 160 KDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIM 239 (393)
T ss_dssp SCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCT
T ss_pred cCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHH
Confidence 3330145677888889999999999999988888877654422 13456667778899999999999999999988875
Q ss_pred hh--ccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHH--HHHhhcccee
Q psy292 293 DK--LLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIR--VMAKYYTRIT 368 (452)
Q Consensus 293 ~~--~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~--~isk~Ys~It 368 (452)
+. ..++.+++..|+++|..+++. .|...+++|.-.. +.-..+...+.+.++...+. +.+++|++|+
T Consensus 240 ~~L~~~~~~~~l~~Ll~~f~~g~~~-------~f~~~~~~~~~~~---~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~ 309 (393)
T 4b4t_O 240 ETIVNDSNYDWLFQLLNALTVGDFD-------KFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVKNIRMLS 309 (393)
T ss_dssp TSSCSSSSTTHHHHHHHHHHHTCHH-------HHHHHCCHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred HHhhcCCchHHHHHHHHHHhcCCHH-------HHHHHHHHhhhhC---cchhhhHHHHHHHHHHHHHHHHhccCCCCcCc
Confidence 43 346788999999999999874 4444444332110 11112344555666555554 4457899999
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC----------hhHHHHHHHHHHHHHHHHHHHHHh
Q psy292 369 LQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD----------PGEILNEWSASLNELMKLVNNTTH 438 (452)
Q Consensus 369 l~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~----------~~~~l~~W~~~i~~ll~~v~k~~~ 438 (452)
++.||+.+|+|+++||..+++||.+|+|.|+|||++|+|++++..+ ..+.|+.|..++.++++.|++.+.
T Consensus 310 f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 310 FEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------------
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999987533 235799999999999999998765
Q ss_pred hH
Q psy292 439 LI 440 (452)
Q Consensus 439 lI 440 (452)
-|
T Consensus 390 ~i 391 (393)
T 4b4t_O 390 SI 391 (393)
T ss_dssp --
T ss_pred CC
Confidence 43
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-20 Score=195.09 Aligned_cols=248 Identities=17% Similarity=0.187 Sum_probs=180.3
Q ss_pred chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-C
Q psy292 176 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT-P 254 (452)
Q Consensus 176 ~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t-~ 254 (452)
|..-...++-..+|.|+..+++..|..+.+|+...- .... ....++|+.|.|+++...++|.+|..++..++.. |
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~-~~~s---n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPH-TDVS---SSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT-TTSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCc-ccCC---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 445667788899999999999999999999996221 1122 3456899999999999999999999999999864 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCC
Q psy292 255 CIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVF 334 (452)
Q Consensus 255 ~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~ 334 (452)
........+..++|++|++.+|++..|+|+.+.....+ +.+..|..|+++|..+++..|...+..++..+..+..+
T Consensus 302 ~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~----~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty 377 (523)
T 4b4t_S 302 HNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ----KSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY 377 (523)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCH----HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT
T ss_pred cchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh
Confidence 22222346788999999999999988888755433332 23556888999999999977776666666666655554
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCC-hHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCC
Q psy292 335 NQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP-IEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413 (452)
Q Consensus 335 ~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls-~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~ 413 (452)
.-...|+..++.++|+.+++.|++|+++.+|..++++ ++++|..+++||.+|.|.|+||+.+|+|.|....
T Consensus 378 --------~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~ 449 (523)
T 4b4t_S 378 --------QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELL 449 (523)
T ss_dssp --------HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSS
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccc
Confidence 2357789999999999999999999999999999995 7889999999999999999999999999997654
Q ss_pred C---hhHHHHHHHHHHHHHHHHHHHHHhh
Q psy292 414 D---PGEILNEWSASLNELMKLVNNTTHL 439 (452)
Q Consensus 414 ~---~~~~l~~W~~~i~~ll~~v~k~~~l 439 (452)
+ +.+.+..|..+|..+++.-+.....
T Consensus 450 d~yst~ep~~af~~RI~~cl~L~ne~vka 478 (523)
T 4b4t_S 450 NIYDSEDPQQVFDERIKFANQLHDEYLVS 478 (523)
T ss_dssp CC---------------------------
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4567888999999887776665443
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.83 E-value=1.4e-21 Score=155.85 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCC
Q psy292 342 QKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKD 414 (452)
Q Consensus 342 ~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~ 414 (452)
.+||+.|+++++||||+++++||++|+|++||++|++|++++|..|++||.+|+|+|+|||++|+|+|+++.+
T Consensus 6 ~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 6 SGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999988754
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.54 E-value=5.6e-14 Score=130.77 Aligned_cols=172 Identities=10% Similarity=0.106 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCch
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIP 300 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip 300 (452)
.-+++|+-|.|+++..+++|.+|..++.+++....-. ....+..+|+++|.+.+|.+.-|.+. ++.+ +.. .
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~IL~yLIp~~Ll~G~iP~~~-ll~~----~~~---~ 81 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMILIYLLPVKMLLGHMPTVE-LLKK----YHL---M 81 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTTCEECHH-HHHH----TTC---G
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHcCCCCCHH-Hhhh----Cch---h
Confidence 4578888889999999999999999999998864432 34567789999999999998756543 2221 112 2
Q ss_pred HHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHh------hccceeHHHHHH
Q psy292 301 LYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAK------YYTRITLQRMCD 374 (452)
Q Consensus 301 ~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk------~Ys~Itl~~La~ 374 (452)
.|..|.+++.++++..|...++.++..+..+.++ .+..+++...++.+.+ .|++|+++.++.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~------------lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~ 149 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF------------LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLV 149 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH------------HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH------------HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 4788999999999987777666666655544443 2234444444443333 699999999999
Q ss_pred HhC------CChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCC
Q psy292 375 LLG------LPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK 413 (452)
Q Consensus 375 ll~------ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~ 413 (452)
.++ ++++|+|-.+++||.+|.|.|+||+.+|++++.+..
T Consensus 150 ~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 150 ALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCC
Confidence 995 489999999999999999999999999999887653
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.4e-11 Score=127.42 Aligned_cols=246 Identities=9% Similarity=0.041 Sum_probs=175.5
Q ss_pred cCCHHHHHHHHHHHHHHhcc--C--c----chHHHHHHHHH--HHHHHhhccChHHHHHHHHHhhhhhc----cCCCCch
Q psy292 154 EGDVTEAANIIQELQVETYG--S--M----EKKEKVTLILE--QMRLCLAKKDYIRTQIISKKINTKFF----DDEKDDV 219 (452)
Q Consensus 154 ~gd~~eA~~iL~~l~~Et~~--~--~----~~~~k~e~~Le--~~rl~l~~~d~~~a~~~~~K~~~~~~----~~~~~~~ 219 (452)
....++|+.++..+---|.+ + + +.+.++-+++- ..++|+..++...|+.+.+-+....+ ... .
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~-p-- 215 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEY-Q-- 215 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGS-C--
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhC-C--
Confidence 34567888888876544321 1 1 12444444432 37999999999999998887765422 111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CCCCC---CHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhh
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTT--PCIQS---DPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDK 294 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t--~~~~~---d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~ 294 (452)
..-+++|+-|.|+++..+.+|.+|..++.+++.. +.... ....+..+|+|+|.+.+|.+.-|.++ ++.+.+
T Consensus 216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~-ll~k~~--- 291 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWG-PLRPFL--- 291 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHH-HHGGGS---
T ss_pred ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHH-HHcccc---
Confidence 4568899999999999999999999999999876 43211 12455678999999999998767665 333332
Q ss_pred ccCCchH-HHHHHHHhcCCcccCchhHHHHHHHHhccCCC-CCccchhhHHHHH-HHHHHHHHHHHHHHHhhc--cceeH
Q psy292 295 LLNEIPL-YKGLLQWFTNPELIKWSGLRQLYEEELFKTSV-FNQSTEEGQKCFK-MLKHRVVEHNIRVMAKYY--TRITL 369 (452)
Q Consensus 295 ~~~~ip~-~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~-~~~~~~~g~~~~~-~L~~~viEhNi~~isk~Y--s~Itl 369 (452)
.+.+.. |..|.+++..+++..|...++.++..|..+.+ +. .. .+.. ...++++..-+...+.+| ++|++
T Consensus 292 -~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~-Ll----erLr~~v~RnLirkv~~~~~~~~~~srI~l 365 (455)
T 3t5v_B 292 -SQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIV-LL----EKLPMVTYRNLIKTVIKSWTTEWGQNKLPY 365 (455)
T ss_dssp -CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHH-HH----HHHHHHHHHHHHHHHHHHHTTTTCCCEEEH
T ss_pred -hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHH-HH----HHHHHHHHHHHHHHHHHHHHhcCCCCeeeH
Confidence 234544 88899999999998888888888887776666 41 00 1111 112222222222246668 89999
Q ss_pred HHHHHHhC---------------------CChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccC
Q psy292 370 QRMCDLLG---------------------LPIEETEEFLSSMVVSKTITAKIDRPAGIINFARN 412 (452)
Q Consensus 370 ~~La~ll~---------------------ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~ 412 (452)
+.++..++ ++++++|-.++++|.+|.|.|+||+.+|++++.+.
T Consensus 366 ~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 366 SLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 99999997 58999999999999999999999999999999876
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.45 E-value=2.1e-06 Score=76.97 Aligned_cols=132 Identities=12% Similarity=0.097 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCChhhhHhHHhhhhhh-ccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHH
Q psy292 267 LQNVVLYLMLAPYDNEQSDLTHRVLEDK-LLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCF 345 (452)
Q Consensus 267 Lk~~vl~~ILa~~~~~~~~ll~~~~~~~-~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~ 345 (452)
...+++.++.+|.--.=.++|....-.. +..+-+++..|+..|..+++. .|...-..+|.+.
T Consensus 26 a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~-------~y~~~~~~~p~L~---------- 88 (169)
T 3chm_A 26 LGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWG-------DYKCNATRLPHLS---------- 88 (169)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHH-------HHHHHGGGSCCCC----------
T ss_pred HHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHH-------HHHHhHHhCcchH----------
Confidence 4557788888884322233333221110 123356888999999999764 4444333455442
Q ss_pred HHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCC-hHHHHHHHH-hhhhcCcEEEEeccCCcEEEeccCCCh
Q psy292 346 KMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP-IEETEEFLS-SMVVSKTITAKIDRPAGIINFARNKDP 415 (452)
Q Consensus 346 ~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls-~~evE~~ls-~mI~~~~l~akIDq~~giV~f~~~~~~ 415 (452)
..+.+.++.--+..++.--+.|+++.|++.++++ ++++|..+. ++|..|-|.|||||++++|+..+..+.
T Consensus 89 ~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 89 PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 2333344443344444448999999999999999 999999999 999999999999999999888776443
No 11
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.29 E-value=0.002 Score=60.57 Aligned_cols=224 Identities=10% Similarity=0.023 Sum_probs=148.4
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVK 101 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~ 101 (452)
..+..+......|++++|+..+....+.. +.+......++..++.+++..|+++...+.+.......... ......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 45667788888999999999888844432 34555556789999999999999999988876654322111 122222
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCC--------------------HHHH
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGD--------------------VTEA 160 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd--------------------~~eA 160 (452)
....+........+.+.-...++ .+.......- ....+.+...++.++...|+ +++|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 22222222222333333344444 3322211111 12245677888999999999 9999
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhH
Q psy292 161 ANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSY 240 (452)
Q Consensus 161 ~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df 240 (452)
...++....-....-+.......+.....++...+++..|.....++...... .++ +......+...+..+...++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~--~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGD--KAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTC--HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-cCC--hHHHHHHHHHHHHHHHHcCCH
Confidence 99988754322122234566778888899999999999999999988765422 233 455566677789999999999
Q ss_pred HHHHHHHHHHHcCC
Q psy292 241 LATCKHYRAILTTP 254 (452)
Q Consensus 241 ~ea~~~y~e~~~t~ 254 (452)
-+|..+|.+++...
T Consensus 240 ~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 240 ETASEYYKKTLLLA 253 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.21 E-value=0.00044 Score=65.17 Aligned_cols=221 Identities=12% Similarity=-0.046 Sum_probs=140.1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVKMIQE 105 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~~v~~ 105 (452)
-+......|++++|++.+.......+...+......+...++.+++..|+++...+.+.......... ....+.....
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 128 (338)
T 3ro2_A 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34445667889999998777444333335666667799999999999999999988776654322221 1111111111
Q ss_pred HHh---hhcC------------CCC-----HHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy292 106 CVT---YVDK------------TPS-----KEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANII 164 (452)
Q Consensus 106 ~~~---~~~~------------~~~-----~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL 164 (452)
+.. .... .++ .+.-.+.++ .+........ ......+...++.++...|++++|...+
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--RAAQGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 111 1111 000 111122222 1211111000 1224566788899999999999999999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy292 165 QELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATC 244 (452)
Q Consensus 165 ~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~ 244 (452)
+....-....-+.......+.....++...+++..|.....++...... .++ +......+...+..+...++|-+|.
T Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKD--RAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 8865322222234466678888899999999999999999998766532 333 4555666777899999999999999
Q ss_pred HHHHHHHcC
Q psy292 245 KHYRAILTT 253 (452)
Q Consensus 245 ~~y~e~~~t 253 (452)
.+|.++...
T Consensus 284 ~~~~~a~~~ 292 (338)
T 3ro2_A 284 DYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 13
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.15 E-value=0.0011 Score=64.69 Aligned_cols=112 Identities=10% Similarity=-0.075 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+.....++.++...|++++|...++....-....-+.......+.....++...|++..|.....++....-. .++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~-- 262 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-LKD-- 262 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC--
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-CcC--
Confidence 45566788999999999999999998865432233334466678888899999999999999999998766522 333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.......+...+..+...++|-+|..+|.+++...
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 45556667778999999999999999999987654
No 14
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.13 E-value=0.0012 Score=64.61 Aligned_cols=113 Identities=9% Similarity=-0.095 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+.....++.++...|++++|...++....-....-+.......+.....++...|++..|...+.++....-. .++
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~-- 302 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LND-- 302 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-cCC--
Confidence 34566788999999999999999998865322223334566788888999999999999999999998766522 333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
.......+...+..+...++|-+|..+|.+++....
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444556667779999999999999999999876543
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.08 E-value=0.0015 Score=64.46 Aligned_cols=224 Identities=8% Similarity=-0.023 Sum_probs=139.1
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------------
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR------------ 91 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~------------ 91 (452)
..+..+..+...|++++|++.+....+. .+.+......++..++.+++..|+++...+.+......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4566777888888888888887774433 23566666777788888888888888777665443322
Q ss_pred -----------hhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH-------HHHH-----------------hhcCcchH
Q psy292 92 -----------RSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIE-------TLRT-----------------VTEGKIYV 136 (452)
Q Consensus 92 -----------~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~-------~L~~-----------------~~e~ki~l 136 (452)
.|+...|+ ...+.++.......+.......+. .+.. ..+..-++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAA-ICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 11111111 122223333222222111111111 0011 11111111
Q ss_pred H------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHH
Q psy292 137 E------------VERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIIS 204 (452)
Q Consensus 137 E------------~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~ 204 (452)
+ .........++.++...|++++|...++....-....-+.......+....++++..+++..|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 1 1133466778999999999999999998765322222234456668888899999999999999999
Q ss_pred HHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 205 KKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 205 ~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.++....-. .++ .......+...+.++...++|-+|..+|.+++..
T Consensus 287 ~~al~~~~~-~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 287 KRTLALAVE-LGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHH-TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998776533 233 4455666677899999999999999999988654
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.04 E-value=0.0016 Score=64.25 Aligned_cols=113 Identities=9% Similarity=-0.079 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+.....++.++...|++++|...++....-....-+.......+....+++...|++..|..+++++....-. .++
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~-- 338 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-LGD-- 338 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC--
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-CCC--
Confidence 34466788999999999999999998765432233334466788888999999999999999999998766422 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
.......+...+..+...++|-+|..+|.+++....
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 344555666779999999999999999999977653
No 17
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.00 E-value=0.0049 Score=60.75 Aligned_cols=216 Identities=6% Similarity=-0.045 Sum_probs=135.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH---HHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL---KQAVVKMIQ 104 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~---k~av~~~v~ 104 (452)
.+......|++++|++-+....+..+...|......+...++.+++..|+++...+++..-....... ...++....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34444567899999999988666555556666677899999999999999999988766554322111 222233322
Q ss_pred HHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcch-HHHHH
Q psy292 105 ECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEK-KEKVT 182 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~-~~k~e 182 (452)
.+-.......+.+.-...++ ++.-.....- ....+.....|+.+|...|++++|...++.... ....... .....
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA-VFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCGGGHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhccchhHHH
Confidence 22222223334444444444 3322221111 122456677899999999999999999988653 2222222 44578
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHH
Q psy292 183 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGS---YLATCKHYRAI 250 (452)
Q Consensus 183 ~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~d---f~ea~~~y~e~ 250 (452)
.+....+++...|++..|.....++....- ..++ +.....+ ...+..+...++ +.+|...+...
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQ-KAGD--VIYLSEF-EFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC--HHHHHHH-HHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcCC--HHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 888999999999999999999999876542 2223 3444443 335666666666 55555555444
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.97 E-value=0.0025 Score=59.72 Aligned_cols=224 Identities=13% Similarity=0.107 Sum_probs=140.7
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhcc--CCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH----HH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRT--GSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL----KQ 97 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~--~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~----k~ 97 (452)
.....+......|++++|+..+....+..+. ..+......++..++.+++..|+++...+.+.......... ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3455566677889999999987774432221 12445567789999999999999999988877666432111 11
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHH-HHH---HhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q psy292 98 AVVKMIQECVTYVDKTPSKEIKVKLIE-TLR---TVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYG 173 (452)
Q Consensus 98 av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~---~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~ 173 (452)
........+........+.+.-...++ .+. ....+.. .........++.++...|++++|...++....-...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222222222222223344444444444 222 1111111 124556678899999999999999999987643212
Q ss_pred C--cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhcc--------------------------------------
Q psy292 174 S--MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD-------------------------------------- 213 (452)
Q Consensus 174 ~--~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~-------------------------------------- 213 (452)
. -+.......+....+++...|++..|.....++......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 123456778888899999999999999888888653210
Q ss_pred ---CCC-CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 214 ---DEK-DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 214 ---~~~-~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
... . .......+...+..+...++|-+|..+|..++.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000 0 122334455678888899999999999988754
No 19
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.97 E-value=0.00075 Score=63.36 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=119.6
Q ss_pred HHHhhccChHHHHHHHHHhhhh-----hccCCCCchHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHH----HcCCCCC
Q psy292 189 RLCLAKKDYIRTQIISKKINTK-----FFDDEKDDVQELKL--KYYRLMIELDQHEGSYLATCKHYRAI----LTTPCIQ 257 (452)
Q Consensus 189 rl~l~~~d~~~a~~~~~K~~~~-----~~~~~~~~~~~lk~--~~~~~~~~~~~~~~df~ea~~~y~e~----~~t~~~~ 257 (452)
+=.++.+|+..|...++++... ++...+. ..++.+ ..|+.-+++....+ +.++|..|... |.....
T Consensus 15 ~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~-~~~~~~ar~vyE~~a~~al~~~-D~~~F~~~~~qLk~~Y~~~~~- 91 (229)
T 4b0z_A 15 ADLYDRKDWNACKKELLKLKVELAKQNLFVPTSD-KEKASFARNVFEYGVLVSIQTC-DIESFARYASQVIPFYHDSLV- 91 (229)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSC-HHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHSSCCC-
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHccCC-
Confidence 3346778888888888877532 1111121 133332 33454455554444 45555555433 222211
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhcc---CCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCC
Q psy292 258 SDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLL---NEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVF 334 (452)
Q Consensus 258 ~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~---~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~ 334 (452)
+++.....+.+-++|.++.+..++.+..+..+...... +-+-..-.|.+++..++.. .|-..++..|..
T Consensus 92 -~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~-------kff~l~~~~p~~ 163 (229)
T 4b0z_A 92 -PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFD-------KVASMIRSCNFP 163 (229)
T ss_dssp -CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHH-------HHHHHHHTCCCG
T ss_pred -CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHH-------HHHHHHhcCccc
Confidence 22345667888999999888778887777766532211 2222334578888777542 232333333321
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCC-ChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 335 NQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGL-PIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 335 ~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~l-s~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
. ..--...|..+++..-+..+.+.|++|+++.+++.||+ |+++++..+.+- | =.|+ +|.|.|.+
T Consensus 164 ~-----~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w~i~--dg~i~F~~ 228 (229)
T 4b0z_A 164 E-----FSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---WDIR--DGVIYFPK 228 (229)
T ss_dssp G-----GHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---CEEE--TTEEECC-
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---CEEe--CCEEecCC
Confidence 0 11123567888999999999999999999999999999 578888887763 2 1344 77888864
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.82 E-value=0.016 Score=56.98 Aligned_cols=176 Identities=10% Similarity=-0.019 Sum_probs=116.9
Q ss_pred HHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHh
Q psy292 32 MAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRR---SQLKQAVVKMIQECVT 108 (452)
Q Consensus 32 ~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~---~q~k~av~~~v~~~~~ 108 (452)
....|++++|++-+....+......|......+...++.+|+..|+++...+++..-.... +.....++.....+-.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3467889999999988666555556666677799999999999999999988776554322 1112223333222222
Q ss_pred hhcCCCCHHHHHHHHH-HHHHhhc-CcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q psy292 109 YVDKTPSKEIKVKLIE-TLRTVTE-GKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE 186 (452)
Q Consensus 109 ~~~~~~~~~~~~~l~~-~L~~~~e-~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le 186 (452)
......+.+.-.+.++ ++.-... +.. ...+.+...|+.+|...|++++|...++.... .............+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK-VSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHCGGGHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhhCChhHHHHHHH
Confidence 2223334344444444 4432221 221 13566778899999999999999999988653 2222222333888899
Q ss_pred HHHHHhhccChHHHHHHHHHhhhhh
Q psy292 187 QMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 187 ~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
..+++...|++..|..+.+++....
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 21
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.82 E-value=0.014 Score=55.96 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=117.1
Q ss_pred CchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHhhc-
Q psy292 56 SDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRTVTE- 131 (452)
Q Consensus 56 ~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~e- 131 (452)
.|.........+.+.++...|+|+.-.+.+.....-...+ ....+.....+........+.+.-+..++ .+.-..+
T Consensus 30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 4555555677777888888899988887665544322111 11122222222222222223222233333 3322222
Q ss_pred CcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 132 GKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 132 ~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~-~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
|.. ...+..-..++.+|.. |++++|...++... +.+... +.......+.....++...+++..|.....++...
T Consensus 110 g~~---~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 110 GTP---DTAAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp TCH---HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 221 1245566788999999 99999999998754 233222 23355678888899999999999999999999876
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 211 FFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 211 ~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
....+ . ......++...+..+...++|-+|..+|..++
T Consensus 185 ~~~~~-~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 185 YKEME-N--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHTT-C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHcC-C--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 53322 2 22334455666778888899999999999998
No 22
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.78 E-value=0.0087 Score=54.82 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=122.5
Q ss_pred CchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHhh
Q psy292 56 SDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL----KQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRTVT 130 (452)
Q Consensus 56 ~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~----k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~ 130 (452)
.|......++..++.+|+..|+++...+.+.......... ..........+........+.+.-...++ .+....
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 37 HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3445567789999999999999999988877666432121 12222332223333333344444444444 332111
Q ss_pred c--CcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHhhccChHHHHHHHHH
Q psy292 131 E--GKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYG--SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKK 206 (452)
Q Consensus 131 e--~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~--~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K 206 (452)
+ +.-. .........++.++...|++++|...++....-... .-+.......+....+++...|++..|.....+
T Consensus 117 ~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 117 KVLGKFH--PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 1100 124566688899999999999999999887643211 112345677888889999999999999988888
Q ss_pred hhhhhcc-----------------------------------------CC-CCchHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy292 207 INTKFFD-----------------------------------------DE-KDDVQELKLKYYRLMIELDQHEGSYLATC 244 (452)
Q Consensus 207 ~~~~~~~-----------------------------------------~~-~~~~~~lk~~~~~~~~~~~~~~~df~ea~ 244 (452)
+...... .. .. .......+...+.++...++|-+|.
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 272 (283)
T 3edt_B 195 ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD--SPTVNTTLRSLGALYRRQGKLEAAH 272 (283)
T ss_dssp HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC--CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7654110 00 00 1223344566788999999999999
Q ss_pred HHHHHHHcC
Q psy292 245 KHYRAILTT 253 (452)
Q Consensus 245 ~~y~e~~~t 253 (452)
.+|..++..
T Consensus 273 ~~~~~al~~ 281 (283)
T 3edt_B 273 TLEDCASRN 281 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999888654
No 23
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.54 E-value=0.02 Score=47.35 Aligned_cols=156 Identities=9% Similarity=-0.071 Sum_probs=111.2
Q ss_pred CchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcch
Q psy292 56 SDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIY 135 (452)
Q Consensus 56 ~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~ 135 (452)
.|......++..++.+++..|+++...+++...... .+..++.
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~------------------- 45 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI------------------AKEFGDK------------------- 45 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHHTCH-------------------
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------HHHhCCc-------------------
Confidence 344555668889999999999988876665444321 0001111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCC
Q psy292 136 VEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE 215 (452)
Q Consensus 136 lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~ 215 (452)
...+.....++.++...|++++|...++....-....-+.......+.....++...+++..|.....++.... ...
T Consensus 46 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 122 (164)
T 3ro3_A 46 --AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-QEL 122 (164)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT
T ss_pred --hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHc
Confidence 11345667789999999999999999988653222333444667788888999999999999999999987665 223
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 216 KDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 216 ~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
++ +......+...+..+...++|-+|..+|.+++..
T Consensus 123 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 123 KD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp TC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc--hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33 4555666777899999999999999999988654
No 24
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.49 E-value=0.03 Score=48.92 Aligned_cols=178 Identities=13% Similarity=0.051 Sum_probs=121.6
Q ss_pred HhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcC
Q psy292 33 AAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDK 112 (452)
Q Consensus 33 ~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~ 112 (452)
...|++++|.+.+..+.. |......++..++.++...|+++...+++..... ....
T Consensus 3 ~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~ 58 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA------HPATASGARFMLGYVYAFMDRFDEARASFQALQQ------------------QAQK 58 (203)
T ss_dssp ----CHHHHHHHHHHHHT------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHT
T ss_pred cccccHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH------------------HHHH
Confidence 456778888883333332 2223467888999999999999888666544432 1111
Q ss_pred CCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHHH
Q psy292 113 TPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME--KKEKVTLILEQMRL 190 (452)
Q Consensus 113 ~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~--~~~k~e~~Le~~rl 190 (452)
..+. ...+.....++.++...|++++|...++.... .....+ .......+.....+
T Consensus 59 ~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 59 SGDH---------------------TAEHRALHQVGMVERMAGNWDAARRCFLEERE-LLASLPEDPLAASANAYEVATV 116 (203)
T ss_dssp TCCH---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCCc---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCccHHHHHHHHHHHHHH
Confidence 1211 11345567789999999999999999987653 233333 23667788888999
Q ss_pred HhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCC
Q psy292 191 CLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSD 259 (452)
Q Consensus 191 ~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d 259 (452)
+...|++..|.....++.... ...++ +......+...+..+...++|-+|..+|.+++.......+
T Consensus 117 ~~~~g~~~~A~~~~~~al~~~-~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLVYA-QQADD--QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHH-Hhccc--hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999987664 33444 4555565677899999999999999999999776544333
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.48 E-value=0.044 Score=50.60 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=120.9
Q ss_pred hhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy292 23 DEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKM 102 (452)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~ 102 (452)
+..+..+....+.|++++|++.+..+.+.. .+......+...++.+++..|+|+...+.+..+.+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---------- 82 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY---------- 82 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----------
Confidence 356788888999999999999999865533 2334456789999999999999999877776555421
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHhccC
Q psy292 103 IQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKED--------EGDVTEAANIIQELQVETYGS 174 (452)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~--------~gd~~eA~~iL~~l~~Et~~~ 174 (452)
+..|. .......++..+.. .|++++|...++.+....-.+
T Consensus 83 --------p~~~~------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 83 --------QIDPR------------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp --------TTCTT------------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred --------CCCch------------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 11111 11223445667777 899999999998876421111
Q ss_pred cchH-----------HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHh------
Q psy292 175 MEKK-----------EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHE------ 237 (452)
Q Consensus 175 ~~~~-----------~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~------ 237 (452)
.... ...+..+...+++...|++..|....+++.......+ ......| ..+..+...
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~a~~--~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP----WADDALV--GAMRAYIAYAEQSVR 204 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----THHHHHH--HHHHHHHHHHHTSCG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc----hHHHHHH--HHHHHHHHhcccchh
Confidence 1111 0111226778899999999999999999876652222 1222323 235555433
Q ss_pred ----hhHHHHHHHHHHHHcCCC
Q psy292 238 ----GSYLATCKHYRAILTTPC 255 (452)
Q Consensus 238 ----~df~ea~~~y~e~~~t~~ 255 (452)
++|-+|...|..+...++
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccchHHHHHHHHHHHHHHCC
Confidence 889999999999887654
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.042 Score=49.51 Aligned_cols=204 Identities=11% Similarity=0.023 Sum_probs=123.1
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH---HHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK---QAVV 100 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k---~av~ 100 (452)
.....+......|++++|++.+....+.. .+ ..+...++.+++..|+++...+.+........... ....
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 34555666777888888888877744432 11 24677788888888888888777665553221110 0001
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHH-----------------------HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCH
Q psy292 101 KMIQECVTYVDKTPSKEIKVKLIE-----------------------TLRTVTEGKIYVEVERARLTHILAKMKEDEGDV 157 (452)
Q Consensus 101 ~~v~~~~~~~~~~~~~~~~~~l~~-----------------------~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~ 157 (452)
.....+........+.+.-...++ .+..... .......+-..++.++...|++
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY----VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHHhcCH
Confidence 111111111111111111111111 1111110 1122345567789999999999
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHh
Q psy292 158 TEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHE 237 (452)
Q Consensus 158 ~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~ 237 (452)
++|...++....- ... -...+.....++...+++..|....+++.... ++. .+ .+...+..+...
T Consensus 156 ~~A~~~~~~a~~~-~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~--~~----~~~~l~~~~~~~ 220 (258)
T 3uq3_A 156 PNAVKAYTEMIKR-APE-----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNF--VR----AYIRKATAQIAV 220 (258)
T ss_dssp HHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc-Ccc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHH--HH----HHHHHHHHHHHH
Confidence 9999999987532 111 13677888999999999999999999886653 332 22 244568888899
Q ss_pred hhHHHHHHHHHHHHcC
Q psy292 238 GSYLATCKHYRAILTT 253 (452)
Q Consensus 238 ~df~ea~~~y~e~~~t 253 (452)
++|.+|..+|..++..
T Consensus 221 g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 221 KEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999888654
No 27
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.38 E-value=0.019 Score=54.48 Aligned_cols=110 Identities=8% Similarity=0.035 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCC
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGS--MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 217 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~--~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~ 217 (452)
.+.+-..++.+|...|++++|...++....- +.. -+.......+.-...+|...+++..|..+.+++...... .++
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~-~~~ 231 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQ-LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-cCc
Confidence 3455678899999999999999999987632 222 245577778899999999999999999999998765422 222
Q ss_pred chHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHcC
Q psy292 218 DVQELKLKYYRLMIELDQHEG-SYLATCKHYRAILTT 253 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~~~~-df~ea~~~y~e~~~t 253 (452)
.......+...|..+...+ +|-+|-.+|..++..
T Consensus 232 --~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 232 --MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 2234555666788888777 578888888888543
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.28 E-value=0.055 Score=50.25 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=122.1
Q ss_pred CCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHH-
Q psy292 55 GSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL----KQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRT- 128 (452)
Q Consensus 55 ~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~----k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~- 128 (452)
+.+.+....++..++..++..|+++.....+.......... ..........+........+.+.-...++ .+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999988776665421111 01111222222222222233333334443 2221
Q ss_pred --hhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHHhhccChHHHHHHH
Q psy292 129 --VTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGS--MEKKEKVTLILEQMRLCLAKKDYIRTQIIS 204 (452)
Q Consensus 129 --~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~--~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~ 204 (452)
...+.. .........++.++...|++++|...++....-.... -+.......+....+++...+++..|..+.
T Consensus 100 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 100 EKTLGKDH---PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHhCCCC---hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 111111 1245566788999999999999999998865321111 223466778888899999999999999999
Q ss_pred HHhhhhhccCC-CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 205 KKINTKFFDDE-KDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 205 ~K~~~~~~~~~-~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
.++....-... ++ .......+...+..+...++|-+|..+|.+++.
T Consensus 177 ~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 177 QRALEIYQTKLGPD--DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHTSCTT--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99876542221 11 122344556678999999999999999999875
No 29
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.22 E-value=0.014 Score=48.30 Aligned_cols=112 Identities=10% Similarity=-0.069 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.++.+-..++.++...|++++|...++....-....-+.......+.....++...+++..|.....++.... ...++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~- 84 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKD- 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTC-
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCC-
Confidence 3667778899999999999999999987653222223445666788888999999999999999999988765 33344
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+......+...+..+...++|-+|..+|.+++..
T Consensus 85 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 85 -RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5566667777899999999999999999988654
No 30
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.17 E-value=0.13 Score=48.78 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=120.3
Q ss_pred HhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHh
Q psy292 33 AAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK---RRSQLKQAVVKMIQECVT 108 (452)
Q Consensus 33 ~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~---~~~q~k~av~~~v~~~~~ 108 (452)
...|++++|++.+.. ++-... ..|......++..++.+|...|+++...+.+..-.. ..|.... .+.....+-.
T Consensus 48 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~-~a~~~~~lg~ 125 (292)
T 1qqe_A 48 RLRKELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR-GANFKFELGE 125 (292)
T ss_dssp HHTTCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 347889999998776 332222 234444567899999999999999999887665543 2222221 1222222223
Q ss_pred hhcC-CCCHHHHHHHHH-HHHHh-hcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc-hHHHHHHH
Q psy292 109 YVDK-TPSKEIKVKLIE-TLRTV-TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME-KKEKVTLI 184 (452)
Q Consensus 109 ~~~~-~~~~~~~~~l~~-~L~~~-~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~-~~~k~e~~ 184 (452)
.... +.+.+.-+..++ .|.-. ..+... ..+.+-..++.++...|++++|...++....-....-. ...-.+.+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVA---LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 2223 245555555555 44321 122211 13456678899999999999999999986632111111 11334567
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHH
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQ--HEGSYLATCKHYRAI 250 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~--~~~df~ea~~~y~e~ 250 (452)
+....+++..||+..|....+++.......+.. .+ .++..-.+..+. ...+|.+|...|..+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~--~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RE--SNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HH--HHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777888999999999999999886543111111 11 122221222222 235577777777655
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.14 E-value=0.12 Score=50.58 Aligned_cols=188 Identities=9% Similarity=-0.072 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVER 140 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er 140 (452)
.....+..++..|+++...+++....+....+ ....+..-..+........+.+.-+..++ ++........ .....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-YSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-CHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-chhhH
Confidence 44456777888999999888776655432221 11222222222222222334444444444 3432222111 12245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
+.+...++.++...|++++|.+.++....-....-+.......+.....+|...|++.+|..+..++.... ...++ +
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~--~ 258 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS-REKVP--D 258 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHCG--G
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCC--h
Confidence 67778899999999999999999987653221222334666778888999999999999999999997654 21122 2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
.. ..-+...|..+...++|-+|..+|..++.....
T Consensus 259 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 259 LL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 23 444556799999999999999999999876544
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.09 E-value=0.14 Score=46.30 Aligned_cols=200 Identities=11% Similarity=0.013 Sum_probs=126.3
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
....+......|++++|++.+....+.. +.+ ..+...++.+++..|+++...+.+.............. ..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~ 110 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID--PSS----ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL---NN 110 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---HH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH---HH
Confidence 3445566677899999999887744322 122 35778899999999999999888877664321111111 11
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHH
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLI 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~ 184 (452)
...-+. ...+.+.-.+.++.. ...... .........++.++...|++++|...++....- .. .-...+
T Consensus 111 la~~~~-~~g~~~~A~~~~~~~---~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~ 178 (252)
T 2ho1_A 111 YGGFLY-EQKRYEEAYQRLLEA---SQDTLY--PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NR-----NQPSVA 178 (252)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHH---TTCTTC--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CS-----CCHHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHH---HhCccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-Cc-----ccHHHH
Confidence 111111 122333333333322 111011 113345567899999999999999999886532 11 114567
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+...+++...+++..|.....++.... ++. .+. +...+.++...+++.+|...|..+....
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGG---GQN--ARS----LLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS---CCC--HHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---cCc--HHH----HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 788899999999999999998876543 232 222 3445778888999999999998887654
No 33
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.08 E-value=0.066 Score=48.54 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=107.9
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH-HHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK-QAVVKM 102 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k-~av~~~ 102 (452)
.....+....+.|++++|++.+..+.+.. .+......+...++..+++.|+|+...+.+..+.+....-. ...+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35667888888999999999999865432 23344567889999999999999999988877765322211 000110
Q ss_pred -HHHHHhh--------hcCCC-------CHHHHHHHHHHHHHhhcCcchHH----------HHHHHHHHHHHHHHHhcCC
Q psy292 103 -IQECVTY--------VDKTP-------SKEIKVKLIETLRTVTEGKIYVE----------VERARLTHILAKMKEDEGD 156 (452)
Q Consensus 103 -v~~~~~~--------~~~~~-------~~~~~~~l~~~L~~~~e~ki~lE----------~er~~l~~~La~i~e~~gd 156 (452)
+-.+... +..+. +.+.-+..++.+...-++..+.. .........++.+|...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 0000000 00000 00111122221111111211111 1122233577999999999
Q ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 157 VTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 157 ~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+.+|...++.+... +..- ..-.+.+.....++...|++..|....+++...
T Consensus 163 ~~~A~~~~~~~l~~-~p~~--~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD-YPDT--QATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHH-STTS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-CcCC--CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 99999999987632 3221 223467788889999999999999888877544
No 34
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.00 E-value=0.25 Score=47.00 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=108.3
Q ss_pred HhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhh
Q psy292 33 AAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR---RSQLKQAVVKMIQECVTY 109 (452)
Q Consensus 33 ~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~---~~q~k~av~~~v~~~~~~ 109 (452)
...|++++|++.+...-.-.+...+....-.++..++.+|...|+++.-.+++..-... .|... ..+.....+-..
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~-~~a~~~~~lg~~ 125 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD-TAAMALDRAGKL 125 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH
Confidence 34678888888776632222222344445668889999999999999988876654432 22222 122322333333
Q ss_pred hcCCCCHHHHHHHHH-HHHHh-hcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q psy292 110 VDKTPSKEIKVKLIE-TLRTV-TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQ 187 (452)
Q Consensus 110 ~~~~~~~~~~~~l~~-~L~~~-~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~ 187 (452)
... .+.+.-+..++ .+.-. ..+.. ...+.+...++.+|...|++++|...++....-....-........++..
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERL---RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 333 44455555555 44222 12222 12456778899999999999999999987653211222233455678888
Q ss_pred HHHHhhccChHHHHHHHHHhh
Q psy292 188 MRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 188 ~rl~l~~~d~~~a~~~~~K~~ 208 (452)
..+++..+|+..|....+++.
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 889999999999999999998
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.17 Score=47.22 Aligned_cols=201 Identities=8% Similarity=-0.079 Sum_probs=128.0
Q ss_pred hhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH
Q psy292 22 CDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK 101 (452)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~ 101 (452)
.+..+..+......|++++|++.+..+-+... .+ ..++...+..++..|+++.....+..+.+....-..+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 92 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FH----ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS--- 92 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH---
Confidence 34567788888889999999998888544321 22 1345566778889999999988877766532111111
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHH
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKV 181 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~ 181 (452)
......-+...-.+.+.-...++......+.. ...-..++.++...|++++|...++....- ... ..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~ 159 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-------GPAWIAYGHSFAVESEHDQAMAAYFTAAQL-MKG-----CH 159 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-------THHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTT-----CS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-ccc-----cH
Confidence 11111111111113333344444222222221 123457799999999999999999886532 111 12
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..+.....++...+++..|....+++.... +++ .. .+..++..+...++|-+|-..|..++..
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~--~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED--PF----VMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTC--HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCC--hH----HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345557888999999999999999887654 322 22 2345688888999999999999988765
No 36
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.99 E-value=0.21 Score=48.84 Aligned_cols=111 Identities=12% Similarity=0.007 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCC
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME--KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK 216 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~--~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~ 216 (452)
..+.+-..++.+|...|++++|...++... +.+...+ .......+.....+|...|++..|.....++....-. .+
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~ 218 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAY-EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA-EK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-cC
Confidence 467777889999999999999999998765 3343333 3456677778889999999999999999999876532 34
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 217 DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 217 ~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+ .......+...|..+...++|-+|-.+|.+++..
T Consensus 219 ~--~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 219 Q--PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 4555666677899999999999999999999874
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.99 E-value=0.092 Score=47.75 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=109.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhcc--CCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH----HHHHHHH
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRT--GSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL----KQAVVKM 102 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~--~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~----k~av~~~ 102 (452)
+......|++++|++.+....+..+. +.+......++..++.+++..|+++...+++.......... .......
T Consensus 50 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 50 ALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 33445578899999987774332221 24456677899999999999999999998877666432111 0112222
Q ss_pred HHHHHhhhcCCCCHHHHHHHHH-HHHH--hhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc----C-
Q psy292 103 IQECVTYVDKTPSKEIKVKLIE-TLRT--VTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYG----S- 174 (452)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~l~~-~L~~--~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~----~- 174 (452)
...+........+.+.-...++ .+.. ...+... .....+...|+.++...|++++|...++....-... .
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 2222222223344444444444 2221 1111111 124566778899999999999999999877632110 0
Q ss_pred --------------------------------------cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh
Q psy292 175 --------------------------------------MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 175 --------------------------------------~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
-........+....+++...|++..|..+.+++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02234556677778888888888888888877653
No 38
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.95 E-value=0.092 Score=49.60 Aligned_cols=189 Identities=7% Similarity=-0.060 Sum_probs=112.2
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVKM 102 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~~ 102 (452)
....+......|++++|++.+....+......+..........++.++...|+++...+.+.......... .......
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34566677788999999998877443322222222222345667888888999999988776554211000 0111222
Q ss_pred HHHHHhhhcCCCCHHHHHHHHH-HHH--HhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHH
Q psy292 103 IQECVTYVDKTPSKEIKVKLIE-TLR--TVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKE 179 (452)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~l~~-~L~--~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~ 179 (452)
...+........+.+.-+..++ ++. ....+.. .....+-..++.+|...|++++|...++....-....-+...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 2222222222334444455554 332 1222221 112356678899999999999999999875432111112224
Q ss_pred HHHHHHHHHHHHhhccChHHH-HHHHHHhhhhhccCCCC
Q psy292 180 KVTLILEQMRLCLAKKDYIRT-QIISKKINTKFFDDEKD 217 (452)
Q Consensus 180 k~e~~Le~~rl~l~~~d~~~a-~~~~~K~~~~~~~~~~~ 217 (452)
....+.....++...|++..| ..+.+++.... +..++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~-~~~~~ 272 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF-DILEM 272 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHhCc
Confidence 577888999999999999999 88888887654 33444
No 39
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.82 E-value=0.19 Score=49.71 Aligned_cols=106 Identities=8% Similarity=0.031 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcch-------HHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccC
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEK-------KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDD 214 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~-------~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~ 214 (452)
..-..++.++...|++++|...++.+.. ....-.. -.+.+..+.....+...+++..|...+.++....
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--- 287 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--- 287 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 3456789999999999999999998752 2111111 1122334556888999999999999999887643
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 215 EKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 215 ~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+++ +......+...+..+...++|-+|...|..+...
T Consensus 288 p~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 288 PSI--AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp CSS--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred Ccc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334 5666667778899999999999999999998764
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.81 E-value=0.065 Score=47.96 Aligned_cols=198 Identities=5% Similarity=-0.118 Sum_probs=116.9
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
.+..+......|++++|++.+....+.. +.+ ..+...++.+++..|+++...+.+........... ....
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~ 95 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN--KED----AIPYINFANLLSSVNELERALAFYDKALELDSSAA----TAYY 95 (243)
T ss_dssp ----------------CCTTHHHHHTTC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC--ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----HHHH
Confidence 3455666777888999988887744321 122 45778899999999999999888776664321111 1111
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHH
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLI 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~ 184 (452)
..........+.+.-.+.++......+.. ..+...++.++...|++++|...++....- .. .-...+
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~ 162 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NE-----NDTEAR 162 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CT-----TCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC-----ccHHHH
Confidence 11111112233344444455333333322 224566799999999999999999886532 11 123467
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.....++...+++..|.....++.... ++. .. .+...+..+...++|-+|..+|..++...
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD---PGH--AD----AFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---ccc--HH----HHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 778889999999999999998886653 222 22 23456888889999999999999887654
No 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.81 E-value=0.45 Score=46.85 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=100.4
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
..+..+....+.|++++|++.+....+.. +.+ ..+...++..++..|+++...+.+....+.......+...+.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDN----YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--Ccc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 35566777788999999999888744322 122 457788899999999999998877766543211111111110
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcc-----hH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKI-----YV---EVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM 175 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki-----~l---E~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~ 175 (452)
.......+.+.-...++......+... +. ..........+|..+...|++++|...++.+... ..
T Consensus 102 ----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-- 174 (450)
T 2y4t_A 102 ----HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CV-- 174 (450)
T ss_dssp ----HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--
T ss_pred ----HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--
Confidence 000011112222222221111111110 00 0001112334466666777777777776665421 11
Q ss_pred chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 176 EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 176 ~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
.-...+.....++...|++..|.....++.... +++ .. .+...+..+...++|-+|...|..+..
T Consensus 175 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 175 ---WDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDN--TE----AFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp ---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSC--HH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112344555556666666666666555554432 111 11 122234455555555555555555543
No 42
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.77 E-value=0.15 Score=49.00 Aligned_cols=208 Identities=12% Similarity=-0.005 Sum_probs=123.3
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
..+..+....+.|++++|++.+....+.. +.+ ..+...++.+++..|+++...+.+............ ..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~ 136 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD--PGD----AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK----AL 136 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HH
Confidence 46677888888999999999888844322 122 457889999999999999998887766643211111 11
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcC--cchHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEG--KIYVEV-ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~--ki~lE~-er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k 180 (452)
..+........+.+.-+..++......+. ..+... ....+...++.++...|++++|...++....- ... ...
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~---~~~ 212 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-NGD---MID 212 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-SCS---SCC
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-CcC---ccC
Confidence 11111111222333333444422111111 111100 12344566799999999999999999987632 111 012
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
...+.....++...+++..|.....++.... +++ .. .+...|..+...++|-+|-..|..++...
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~--~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR---PED--YS----LWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567778889999999999999999887653 332 22 23456888889999999999999997653
No 43
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.72 E-value=0.41 Score=45.17 Aligned_cols=190 Identities=11% Similarity=0.068 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHhh-cCc
Q psy292 58 MVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL--KQAVVKMIQECVTYVDKTPSKEIKVKLIE-TLRTVT-EGK 133 (452)
Q Consensus 58 ~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~--k~av~~~v~~~~~~~~~~~~~~~~~~l~~-~L~~~~-e~k 133 (452)
....-....+.+.++...|+|+.-.+.+.........+ ....+.....+-.......+.+.-+..++ .+.-.. .|.
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 33344456666778888888888887766544322111 11122222222222223333333334444 332111 122
Q ss_pred chHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 134 IYVEVERARLTHILAKMKEDE-GDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 134 i~lE~er~~l~~~La~i~e~~-gd~~eA~~iL~~l~~Et~~~~-~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.. .-+..-..++.+|... |++++|...++.... .+... +.....+.+.....++...|++..|....+++....
T Consensus 113 ~~---~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 113 FR---RGANFKFELGEILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HH---HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HH---HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11 1345567889999997 999999999987542 22222 222345678888999999999999999999988765
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 212 FDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 212 ~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
...+.. .+. ...++...|..+...++|-+|-.+|..+...
T Consensus 189 ~~~~~~-~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 189 MGNRLS-QWS-LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp SSCTTT-GGG-HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hcCCcc-cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 332211 001 1224455688888899999999999998654
No 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.72 E-value=0.4 Score=45.07 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=131.4
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVT 108 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~ 108 (452)
+......|++++|++.+....+... .+ ..+...++.++...|+++...+.+............+...+.. -
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~---~ 197 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV--WD----AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST---L 197 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHH---H
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC--Cc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---H
Confidence 5566778899999998888544321 22 3567889999999999999988877766432111111111111 1
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCcchH-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 109 YVDKTPSKEIKVKLIETLRTVTEGKIYV-----EVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 109 ~~~~~~~~~~~~~l~~~L~~~~e~ki~l-----E~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
+. ...+.+.-...++......+..... ..........++.++...|++++|...++..... ..-+.......
T Consensus 198 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 274 (359)
T 3ieg_A 198 YY-QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS 274 (359)
T ss_dssp HH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH
Confidence 11 1122233333333222222222111 1112233456699999999999999999987642 22234455567
Q ss_pred HHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
+.....++...|++..|.....++.... +++ ++ .+...|..+...++|-+|..+|..++...+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~----~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQME---PDN--VN----ALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC---ccc--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7788899999999999999999887652 333 33 244558889999999999999999987643
No 45
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.70 E-value=0.061 Score=50.86 Aligned_cols=169 Identities=17% Similarity=0.110 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH---HHHHhhhc--CCCCHHHHHHHHHHHH----HhhcCcchHHHHHHHHHHHHHHHH
Q psy292 81 LNEHITMLTKRRSQLKQAVVKMI---QECVTYVD--KTPSKEIKVKLIETLR----TVTEGKIYVEVERARLTHILAKMK 151 (452)
Q Consensus 81 l~~~~~~l~~~~~q~k~av~~~v---~~~~~~~~--~~~~~~~~~~l~~~L~----~~~e~ki~lE~er~~l~~~La~i~ 151 (452)
+-+.+..+++.+|-....+++.+ ..+-.|-. ..|+.+....+.+.+. .+..+..+-+.+....-...+..+
T Consensus 6 ~g~~i~~~R~~~~~tq~~la~~~~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 85 (293)
T 3u3w_A 6 LGSEIKKIRVLRGLTQKQLSENICHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIML 85 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTTSCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHhCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHH
Confidence 33456666666655544444321 11112211 2467777777777552 333333222223333334557788
Q ss_pred HhcCCHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHH
Q psy292 152 EDEGDVTEAANIIQELQVETYGSMEK-KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLM 230 (452)
Q Consensus 152 e~~gd~~eA~~iL~~l~~Et~~~~~~-~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~ 230 (452)
...|++++|..+++.+... ....++ .....++....-+++..+++..|.....++...... .++ +......+...
T Consensus 86 ~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~--~~~~~~~~~~l 161 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GID--VYQNLYIENAI 161 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSC--TTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-ccc--HHHHHHHHHHH
Confidence 9999999999999987642 222222 233556666777788888999999999999875433 233 44455556778
Q ss_pred HHHHHHhhhHHHHHHHHHHHHcC
Q psy292 231 IELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 231 ~~~~~~~~df~ea~~~y~e~~~t 253 (452)
|..+...++|-+|-.+|..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999853
No 46
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.69 E-value=0.19 Score=48.29 Aligned_cols=198 Identities=12% Similarity=-0.029 Sum_probs=122.9
Q ss_pred HHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHH------HHHH
Q psy292 30 IKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAV------VKMI 103 (452)
Q Consensus 30 ~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av------~~~v 103 (452)
......|++++|++.+...-+.. +.+ ..+...++.++...|+++...+.+....+......... +.+.
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 180 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQ--PNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLT 180 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHH
Confidence 33455688899999887743321 121 35788999999999999999888776664321111000 0111
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
..+........+.+.-...++......+... ...+-..++.++...|++++|...++....- .. .-...
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~ 249 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RP-----EDYSL 249 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT-----TCHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC-----CCHHH
Confidence 1111111111222333444443333333311 1234467899999999999999999986532 11 11457
Q ss_pred HHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+.....++...|++..|....+++.... ++. ... +...+..+...++|-+|..+|..++..
T Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~--~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 250 WNRLGATLANGDRSEEAVEAYTRALEIQ---PGF--IRS----RYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HHH----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCc--hHH----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7788899999999999999999887653 332 222 344588888999999999999988764
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.67 E-value=0.19 Score=45.83 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=42.9
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
..+..+..+...|++++|++.+....+... .+. .++..++.+++..|+++...+.+.....
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY--NSP----YIYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--CCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356677788888889999998887433221 221 2466777788889999988887766654
No 48
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.62 E-value=0.07 Score=44.03 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+.....|+..+...|+|++|...++... +... .-...+.-...+++..+++..|.....++.........+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~~p-----~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELDP-----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD-- 78 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-----CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh--
Confidence 45556788999999999999999998754 2211 124677788889999999999999999887654333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+.....-+..+|..+...++|-+|..+|..++...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555556677999999999999999999987643
No 49
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.61 E-value=0.54 Score=48.33 Aligned_cols=269 Identities=11% Similarity=-0.039 Sum_probs=140.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVT 108 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~ 108 (452)
+....+.|++++|++.+..+.+.. +.+ ..+...++..|.+.|+++...+.+..+.+....- . .....+..
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~l~~ 381 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID--PYN----LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK--A--VTWLAVGI 381 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTC----CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--H--HHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC--ccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc--H--HHHHHHHH
Confidence 444455666667766665533211 111 1234555666667777776666555444221110 0 11111111
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q psy292 109 YVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQM 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~ 188 (452)
......+.+.-.++++......++. ...-..++.++...|++++|.++++.+... .. .-...+....
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~~l~ 448 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQF-------GPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQ-----GTHLPYLFLG 448 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TT-----TCSHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----cchHHHHHHH
Confidence 1112223333333333222222221 123356788999999999999999876532 11 1134566677
Q ss_pred HHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC-CCCCHHHHHHHH
Q psy292 189 RLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC-IQSDPIQRHAVL 267 (452)
Q Consensus 189 rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~-~~~d~~~~~~~L 267 (452)
.+|...|++..|....+++.... +++ +.. +..++..+...++|-+|...|.++..... ...++..+..++
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF---QYD--PLL----LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC---CCC--HHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCC--hHH----HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 88889999999999888886543 223 322 45678888889999999999998876421 011222222233
Q ss_pred HHHHHHHHhCCCChhhhHhHHhhhh-hhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCC
Q psy292 268 QNVVLYLMLAPYDNEQSDLTHRVLE-DKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333 (452)
Q Consensus 268 k~~vl~~ILa~~~~~~~~ll~~~~~-~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~ 333 (452)
..+..+..-.+.-.+--..+.+..+ +| .....+..+..+|... -+|.+....|+..+.-+|-
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLST--NDANVHTAIALVYLHK--KIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCC
Confidence 3333222222221222223333332 22 1233566677777543 2566666677777665443
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.61 E-value=0.37 Score=45.95 Aligned_cols=202 Identities=9% Similarity=-0.028 Sum_probs=120.1
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh------------
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRR------------ 92 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~------------ 92 (452)
.+..+......|++++|++.+....+.. +.+ ..+...++.+++..|+++...+.+.......
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~ 140 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 140 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4567778888999999999888854322 122 3567788999999999999887766554321
Q ss_pred -----hhHHHHHHHHHHHHHhhhcCCCCH-----------------------------HHHHHHHHHHHHhhcCcchHHH
Q psy292 93 -----SQLKQAVVKMIQECVTYVDKTPSK-----------------------------EIKVKLIETLRTVTEGKIYVEV 138 (452)
Q Consensus 93 -----~q~k~av~~~v~~~~~~~~~~~~~-----------------------------~~~~~l~~~L~~~~e~ki~lE~ 138 (452)
|+...|+ ...+.++..-+..+.. +.-+..++......+...
T Consensus 141 ~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---- 215 (368)
T 1fch_A 141 SFTNESLQRQAC-EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI---- 215 (368)
T ss_dssp HHHHTTCHHHHH-HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC----
T ss_pred HHHHcCCHHHHH-HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc----
Confidence 1111111 1122222211110000 000111111111111100
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
...+-..++.++...|++++|...++....- .. .-...+.....++...|++..|.....++.... ++.
T Consensus 216 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~- 284 (368)
T 1fch_A 216 -DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---PGY- 284 (368)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc-
Confidence 2344567788899999999999888876532 11 113567777888888999999988888876543 332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.. .+...+..+...++|-+|..+|..+...
T Consensus 285 -~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 285 -IR----SRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp -HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22 2344578888888999988888887654
No 51
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.54 E-value=0.15 Score=40.42 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
+..-..++..+...|++++|...++....- .. .-...+.....++...+++..|.....++.......++. +
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-DP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--Y 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--H
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--H
Confidence 445577899999999999999999886532 11 124677788889999999999999999987665333333 4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
......+...+..+...++|-+|-.+|..++...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4445556677999999999999999999987754
No 52
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.51 E-value=0.27 Score=46.29 Aligned_cols=109 Identities=6% Similarity=-0.026 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
....++.++...|++++|...++..........+.......+.....+|...+++..|..+..++....-..++. +..
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~ 194 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEF 194 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccc
Confidence 345588999999999999999987653222333444567788888999999999999999999998654233343 444
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
....+...|..+...++|-+|-.+|..++..
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5455666799999999999999999988643
No 53
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.48 E-value=0.17 Score=43.88 Aligned_cols=112 Identities=10% Similarity=-0.023 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM-EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~-~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
...+...++.++...|++++|...++.... ..... +.......+.....++...+++..|.....++....-..+++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 102 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQ-QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED- 102 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc-
Confidence 345667789999999999999999988654 23333 445677788888999999999999999999988765332323
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+......+...+..+...++|-+|..+|.+++...
T Consensus 103 -~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 103 -PLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44555666777999999999999999999987543
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.39 E-value=0.7 Score=43.83 Aligned_cols=191 Identities=7% Similarity=0.057 Sum_probs=116.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy292 27 PAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQEC 106 (452)
Q Consensus 27 ~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~ 106 (452)
=.++.+.-.|++++|++.+..+.. .+-.....+-..+.+.|...|+++.....+.... ..-...+..+
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~-------~~~~~a~~~l 71 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS-------APELQAVRMF 71 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTS-------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccC-------ChhHHHHHHH
Confidence 356778888999999988765432 1112223455667889999999998876553321 1122345555
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHh--hcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHH
Q psy292 107 VTYVDKTPSKEIKVKLIETLRTV--TEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLI 184 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~L~~~--~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~ 184 (452)
..++....+.+.-++.++.+-.. .++. ..+...++.++...|++++|.+.++. ..-.+.+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~-------~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~ 133 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTN-------TTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECM 133 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSC-------HHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHH
Confidence 55555444444444444422111 1222 22456778889999999999988865 1223567
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+...++++..|++..|...++++...- ++. . ...+......++...++|-+|...|.++....
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~--~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD---EDA--T--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--H--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC---cCc--H--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 777888888899999888888876552 332 2 12222212234445678888888888887753
No 55
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.32 E-value=0.67 Score=42.99 Aligned_cols=201 Identities=7% Similarity=-0.068 Sum_probs=123.2
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhh----------
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRS---------- 93 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~---------- 93 (452)
..+..+......|++++|+..+....+.. +. ...+...++..++..|+++...+.+........
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 45778888889999999999887754422 12 235667788999999999988877665543211
Q ss_pred -------hHHHHHHHHHHHHHhhhcCCCCH-----------------------------HHHHHHHHHHHHhhcCcchHH
Q psy292 94 -------QLKQAVVKMIQECVTYVDKTPSK-----------------------------EIKVKLIETLRTVTEGKIYVE 137 (452)
Q Consensus 94 -------q~k~av~~~v~~~~~~~~~~~~~-----------------------------~~~~~l~~~L~~~~e~ki~lE 137 (452)
+...|+ +..+.++..-+..+.. +.-...++......+.
T Consensus 97 ~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----- 170 (327)
T 3cv0_A 97 VSHTNEHNANAAL-ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN----- 170 (327)
T ss_dssp HHHHHTTCHHHHH-HHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-----
T ss_pred HHHHHcCCHHHHH-HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-----
Confidence 111111 1122222211111000 0001111111111111
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCC
Q psy292 138 VERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKD 217 (452)
Q Consensus 138 ~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~ 217 (452)
...+...++.++...|++++|...++..... .. .-...+.....++...+++..|.....++.... ++.
T Consensus 171 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 239 (327)
T 3cv0_A 171 --DAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDIN---PGY 239 (327)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred --CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC
Confidence 2345567899999999999999999876532 11 113567778888999999999999888886653 222
Q ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 218 DVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 218 ~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
... +...+..+...++|-+|...|..++..
T Consensus 240 --~~~----~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 240 --VRV----MYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp --HHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHH----HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222 334578888889999999999888654
No 56
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.49 Score=42.25 Aligned_cols=171 Identities=13% Similarity=0.002 Sum_probs=106.6
Q ss_pred hHHHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh---------hhhH
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR---------RSQL 95 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~---------~~q~ 95 (452)
...+......|++++|++.+.. ++.......+......+...++.++...|+++...+.+....+. .|+.
T Consensus 42 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 42 NNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 3445556678899999998877 44333333455555778999999999999999998887766652 1222
Q ss_pred HHHHHHHHHHHHhh--------------hcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy292 96 KQAVVKMIQECVTY--------------VDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAA 161 (452)
Q Consensus 96 k~av~~~v~~~~~~--------------~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~ 161 (452)
..++. ..+.++.. .-...+.+.-+..++......+. ...+-..++.++...|++++|.
T Consensus 122 ~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 122 EKELK-KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-------DARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHH-HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-------cHHHHHHHHHHHHHhCCHHHHH
Confidence 22111 11111110 00111222222233322222222 1235567899999999999999
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 162 NIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 162 ~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..++....- .. .-.+.++....++...|++..|.....++...
T Consensus 194 ~~~~~al~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 194 ADCNKAIEK-DP-----NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999886531 11 12467788889999999999999998888654
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.27 E-value=0.24 Score=42.54 Aligned_cols=159 Identities=11% Similarity=-0.029 Sum_probs=101.6
Q ss_pred HHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQEC 106 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~ 106 (452)
-+....+.|++++|++.+.. ++..+ .+ ..+...++.++...|+++...+.+............+. ...
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 79 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKADP---NN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY----YIL 79 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH----HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH----HHH
Confidence 34555678899999998888 44322 22 35788999999999999999887776654322221111 111
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q psy292 107 VTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le 186 (452)
........+.+.-...++......+.. ......++.++...|++++|.+.++....- .. .-.+.+..
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-~p-----~~~~~~~~ 146 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI-KP-----GFIRAYQS 146 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHh-cc-----hhhhHHHH
Confidence 111112223333444444333333322 224466799999999999999999876531 11 22457778
Q ss_pred HHHHHhhccChHHHHHHHHHhhhh
Q psy292 187 QMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 187 ~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
...++...|++..|....+++...
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 888999999999999999988543
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.24 E-value=0.36 Score=49.68 Aligned_cols=103 Identities=13% Similarity=-0.046 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYG-SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~-~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.-..++.++...|++++|.+.++....-... ..++......+.....+|...|++..|....+++...- +++ ..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~--~~ 551 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---TND--AN 551 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SCC--HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCC--hH
Confidence 3456788888889999998888876532111 22233336777788888888899998888888876553 332 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.+...+..+...+++-+|...|..+++..
T Consensus 552 ----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 552 ----VHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 24455778888888888888888887653
No 59
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.23 E-value=0.95 Score=43.79 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=99.3
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQE 105 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~ 105 (452)
++.|....+.|++++|++.+..+-+.. +.+ ..++..+..+++..|+++..........+.....-.+-..+..
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~- 75 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQE--PDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN- 75 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH-
Confidence 345777788899999999887754432 122 2456677888999999998877665554322111011000100
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 106 CVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
-+. ...+.+.-+..++......++.. ..-..++..+...|++++|.+.++....- .. .-...+.
T Consensus 76 --~~~-~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~ 139 (388)
T 1w3b_A 76 --VYK-ERGQLQEAIEHYRHALRLKPDFI-------DGYINLAAALVAAGDMEGAVQAYVSALQY-NP-----DLYCVRS 139 (388)
T ss_dssp --HHH-HHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CT-----TCTHHHH
T ss_pred --HHH-HCCCHHHHHHHHHHHHHcCcchH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----CcHHHHH
Confidence 000 01111222222221111222211 12244566666677777777666654321 10 1123344
Q ss_pred HHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 186 EQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 186 e~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
....++...+++..|.....++.... ++. .. .+...+..+...++|-+|...|..+...
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~---p~~--~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ---PNF--AV----AWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC---CCC--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45555666667766666666655432 221 11 1233455666666666666666666543
No 60
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.18 E-value=0.38 Score=44.80 Aligned_cols=104 Identities=10% Similarity=0.108 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYG---SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~---~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.+-..++.++...|++++|...++....-... ..........+.....++...|++..|....+++.... ++.
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~- 269 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---PQN- 269 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC-
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC---ccc-
Confidence 34466788888899999998888876532111 11112334677778888888899999988888887653 211
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
... +...+..+...++|-+|..+|..++...
T Consensus 270 -~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 270 -AST----YSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp -SHH----HHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred -hHH----HHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 111 3345888888899999999998887654
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.17 E-value=0.43 Score=40.92 Aligned_cols=166 Identities=9% Similarity=-0.031 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
..+...++..++..|+++.-.+.+....+....-..+ ......-+. ...+.+.-+..++......... .
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~-------~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET---LLKLGKTYM-DIGLPNDAIESLKKFVVLDTTS-------A 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCC-------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHH-HCCCHHHHHHHHHHHHhcCchh-------H
Confidence 3466789999999999999988877666432111111 111111111 2223333444444333333332 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.....++.++...|++++|...+.....- .. .-.+.+.....++...|++..|....+++...- |++ ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---p~~--~~ 142 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIAL-NT-----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---PGF--IR 142 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---chh--hh
Confidence 24456788999999999999998876532 11 123566777888999999999999999887653 333 33
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. +...|..+...++|-+|..+|..+++.
T Consensus 143 ~----~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 143 A----YQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 2 344688999999999999999999764
No 62
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.32 Score=48.64 Aligned_cols=101 Identities=7% Similarity=0.022 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh---ccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLA---KKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~---~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..++.++...|++++|...++....-....-+.......+.....++.. .|++..|....+++.... ++. ..
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~--~~ 450 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRS--EQ 450 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---ccc--HH
Confidence 4556666677777777766665432111111111113355556666666 677777766666665432 222 11
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.+...+..+...++|-+|...|..++...
T Consensus 451 ----~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 451 ----AKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 12334666666777777777777666543
No 63
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.01 E-value=0.25 Score=44.50 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=110.0
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHH---HHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQA---VVK 101 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~a---v~~ 101 (452)
....+..+.+.|++++|+..+....+.. +.+ ..+...++.++...|+++.-...+....+.......+ .+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN--PQD----PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3455677788999999999888744321 122 3567889999999999999988777665432111111 111
Q ss_pred HHHHHHhhhcCCC-------CHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q psy292 102 MIQECVTYVDKTP-------SKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGS 174 (452)
Q Consensus 102 ~v~~~~~~~~~~~-------~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~ 174 (452)
+.... + .... +.+.-+..++......++. ...-..++.++...|++++|...++....- .
T Consensus 82 ~~~~~--~-~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~- 148 (217)
T 2pl2_A 82 AYVAL--Y-RQAEDRERGKGYLEQALSVLKDAERVNPRY-------APLHLQRGLVYALLGERDKAEASLKQALAL--E- 148 (217)
T ss_dssp HHHHH--H-HTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-
T ss_pred HHHHh--h-hhhhhhcccccCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--c-
Confidence 11110 0 0000 0011112222111222221 234467899999999999999999886532 1
Q ss_pred cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 175 MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 175 ~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
.-.+.++....++...|++..|...++++...- |++ ++. +...+..+...++|-+|...|..+
T Consensus 149 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~~--~~~----~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 ----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---PKD--LDL----RVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTC--HHH----HHHHHHHHTC--------------
T ss_pred ----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--hHH----HHHHHHHHHHccCHHHHHHHHHHH
Confidence 224567788889999999999999999887653 443 333 233477888889999988887765
No 64
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.00 E-value=0.24 Score=51.46 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=95.9
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHH-Hhhhhc-cCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLA-LEKQTR-TGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK 101 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~-lek~~r-~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~ 101 (452)
..++++..+-..|++++|+..+.. |+...+ .+.+..++-.++..++.+|..+|+|+....+......-+
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--------- 381 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY--------- 381 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 456667777778999999997766 555444 378889999999999999999999999877665443210
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cCcchH--
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY-GSMEKK-- 178 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~-~~~~~~-- 178 (452)
. . .-|.-..+ .+..-..||.+|...|++++|..+++.... .+ ..+++.
T Consensus 382 --~---~---------------------~lG~~Hp~--~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~-i~~~~lG~~Hp 432 (490)
T 3n71_A 382 --M---K---------------------LYHHNNAQ--LGMAVMRAGLTNWHAGHIEVGHGMICKAYA-ILLVTHGPSHP 432 (490)
T ss_dssp --H---H---------------------HSCTTCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCTTSH
T ss_pred --H---H---------------------HcCCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 0 0 11111111 455567889999999999999999887542 22 222222
Q ss_pred --HHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 179 --EKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 179 --~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..+.-.|.+. +.+.+-+..|+..+.++...
T Consensus 433 ~~~~~~~~l~~~--~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 433 ITKDLEAMRMQT--EMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2233333333 34555567777666666443
No 65
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.80 E-value=1.3 Score=41.54 Aligned_cols=175 Identities=11% Similarity=0.029 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.+...++.++...|++++|...++..... .. .-.+.+.....++...+++..|....+++.... ++. ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~--~~ 223 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKL-KS-----DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDH--KR 223 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CS-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---ccc--hH
Confidence 34566788899999999999988876532 11 123567788888999999999998888887553 222 22
Q ss_pred HHHHH--------HHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhh-
Q psy292 222 LKLKY--------YRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLE- 292 (452)
Q Consensus 222 lk~~~--------~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~- 292 (452)
....| ....+..+...++|-+|...|..+...... ++.-+..++..+..+..-...-.+--..+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22111 223477788899999999999999875433 3322222222222222222211122223333332
Q ss_pred hhccCCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCC
Q psy292 293 DKLLNEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333 (452)
Q Consensus 293 ~~~~~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~ 333 (452)
+|. ....+..+..++... -++.+....|+..+.-+|-
T Consensus 302 ~~~--~~~~~~~~~~~~~~~--g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 302 EPD--NVNALKDRAEAYLIE--EMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp CTT--CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCTT
T ss_pred Ccc--cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCC
Confidence 222 233556667776543 3566666778887765554
No 66
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.67 E-value=1.6 Score=41.90 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=128.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---hhhhHHHHHHH-HH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK---RRSQLKQAVVK-MI 103 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~---~~~q~k~av~~-~v 103 (452)
.+......|++++|++.+........ ..+......++..+..+++..|+++.-.+.+..... ..|... .... ..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 97 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH-YALWSLI 97 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-HHHHHHH
Confidence 34445668899999998877333222 223333445788889999999999998777665443 222211 1111 11
Q ss_pred HHHHhhhcCCCCHHHHHHHHH-HHHHhhc--CcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIE-TLRTVTE--GKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~-~L~~~~e--~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k 180 (452)
....-+. ...+.+.-...++ .+....+ +.-. .........++.++...|++++|...+.....- ....+....
T Consensus 98 ~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~ 173 (373)
T 1hz4_A 98 QQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQL--PMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQ 173 (373)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTS--THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGG
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHH
Confidence 1111111 1222333334444 3322111 1100 013445567899999999999999999876532 222223334
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
...+....+++...||+..|...+.++.... ...+.. ...........+.++...+++-+|...|.++....
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 5667778999999999999999999887654 222220 11112222234556778999999999998887543
No 67
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.65 E-value=0.76 Score=46.31 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=120.8
Q ss_pred CcHHHHHHHHHHhhhhccCCchh-H--HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCC
Q psy292 37 KFHDAIDSLLALEKQTRTGSDMV-S--TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKT 113 (452)
Q Consensus 37 ~~~~a~~~l~~lek~~r~~~d~~-~--~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~ 113 (452)
++++|+..+..+.+... .+.. + ...++..++.+++..|+++...+.+......... ..-.+.... .....
T Consensus 217 ~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~-~~~~~ 289 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANT--VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT----PNSYIFLAL-TLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHC--C--CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHH-HTCCS
T ss_pred HHHHHHHHHHHHHHHCC--CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----chHHHHHHH-HHHHh
Confidence 46777777776443221 2211 1 2337888899999999999998887776653222 111122122 22223
Q ss_pred CCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Q psy292 114 PSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLA 193 (452)
Q Consensus 114 ~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~ 193 (452)
.+.+.-...++......+.. ..+...++.++...|++++|...++....- ... -...+.....++..
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEY-------PPTYYHRGQMYFILQDYKNAKEDFQKAQSL-NPE-----NVYPYIQLACLLYK 356 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHH
Confidence 33344455555333333322 234567899999999999999999887632 111 12567778889999
Q ss_pred ccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 194 KKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 194 ~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.|++..|.....++.... +++ ++. +...+..+...++|-+|...|..++..
T Consensus 357 ~g~~~~A~~~~~~~~~~~---~~~--~~~----~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKF---PTL--PEV----PTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC---TTC--THH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCC--hHH----HHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999999999887664 222 222 234488889999999999999998654
No 68
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.68 Score=46.21 Aligned_cols=192 Identities=9% Similarity=0.056 Sum_probs=122.9
Q ss_pred cCCcHHHHHHHHHHhh-----hhccCCch---hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy292 35 EGKFHDAIDSLLALEK-----QTRTGSDM---VSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQEC 106 (452)
Q Consensus 35 ~~~~~~a~~~l~~lek-----~~r~~~d~---~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~ 106 (452)
.|++++|++.+....+ ....+.+. .....+...++..++..|+++...+.+......... ..-.....
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~l~ 277 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMA 277 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc----HHHHHHHH
Confidence 7889999998877444 22222332 445668899999999999999998888776653322 11111111
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Q psy292 107 VTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le 186 (452)
.-+. ...+.+.-...++......++. ..+...++.++...|++++|...+.....- ... -...+..
T Consensus 278 ~~~~-~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~ 343 (514)
T 2gw1_A 278 LIMA-DRNDSTEYYNYFDKALKLDSNN-------SSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPE-----NIFPYIQ 343 (514)
T ss_dssp HHHH-TSSCCTTGGGHHHHHHTTCTTC-------THHHHHHHHHHHHTTCTTHHHHHHHHHHHT-CSS-----CSHHHHH
T ss_pred HHHH-HCCCHHHHHHHHHHHhhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-Chh-----hHHHHHH
Confidence 1111 1122222222333222222221 124467799999999999999999886532 111 1346777
Q ss_pred HHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 187 QMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 187 ~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
...++...|++..|.....++.... ++. ++ .+...+..+...++|-+|...|..++..
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKF---PEA--PE----VPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHS---TTC--SH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHc---ccC--HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8889999999999999999887653 222 22 2344588888999999999999988654
No 69
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.60 E-value=0.83 Score=46.01 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=31.3
Q ss_pred HHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292 30 IKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT 89 (452)
Q Consensus 30 ~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~ 89 (452)
......|++++|++.+....+.. .+ ..+...++.++...|+++...+.+....
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH---PT----PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC---CC----chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 34455677777777766643322 11 2455666667777777777766655544
No 70
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.46 Score=46.74 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.+...+..++...|++++|..+++....-+...-....+........+++...|+|..|..++.++....... ++ ..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~--~~ 172 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL-DD--KP 172 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-SC--ST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc-cc--ch
Confidence 4456678888899999999999987664332222334567788888999999999999999999887665332 22 35
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.+..++...++.+...+||..|-..|..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 57888899999999999999999999888654
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.50 E-value=0.16 Score=42.99 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHH
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLK 225 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~ 225 (452)
.|+.++...|++++|...++... . ...+....++...++|+..+++..|....+++...- |++ ++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~----~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~--~~a--- 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST----P--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERD--PKA--- 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS----C--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HHH---
T ss_pred HhHHHHHHcChHHHHHHHHHHhc----c--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HHH---
Confidence 36788888999999998887632 1 234556677888999999999999999999887653 333 332
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+...|..+...++|-+|-.+|..++...
T Consensus 68 -~~~lg~~~~~~~~~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 68 -HRFLGLLYELEENTDKAVECYRRSVELN 95 (150)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 3455888999999999999999987653
No 72
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.46 E-value=1.2 Score=38.76 Aligned_cols=170 Identities=5% Similarity=-0.043 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
...+...++..++..|+++...+.+........... .....+........+.+.-.+.++......++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------- 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------
Confidence 345667777788888888877776665553221110 010111111111222233333333222222221
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 141 ARLTHILAKMKEDE-GDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 141 ~~l~~~La~i~e~~-gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
......++.++... |++++|...++.... .+. .......+....+++...+++..|.....++.... +++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~-- 146 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALA--DPT--YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQF-- 146 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STT--CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC--
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--
Confidence 22345678889999 999999999887653 111 12345677778888899999999988888876543 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.. .+...+..+...++|-+|...|..+....
T Consensus 147 ~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 147 PP----AFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ch----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 23445778888899999999888887653
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.33 E-value=2.1 Score=41.03 Aligned_cols=214 Identities=9% Similarity=-0.007 Sum_probs=122.8
Q ss_pred HHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH----HHHHHHHHHH
Q psy292 31 KMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK----QAVVKMIQEC 106 (452)
Q Consensus 31 ~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k----~av~~~v~~~ 106 (452)
.....|++++|++.+.......+...+......++..+..+++..|+++.-.+++........... .........+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 344568899998887774443333344444556788899999999999999887766554221110 0111111111
Q ss_pred HhhhcCCCCHHHHHHHHH-HHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcch--HHHHHH
Q psy292 107 VTYVDKTPSKEIKVKLIE-TLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEK--KEKVTL 183 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~-~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~--~~k~e~ 183 (452)
-...-...+.+.-...++ .+. ..+...... .......++.++...|++++|...++....- ....+. ......
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIE-VLSSYQPQQ--QLQCLAMLIQCSLARGDLDNARSQLNRLENL-LGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGG--GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSCCCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-HhhccCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhccCcchhHHHHH
Confidence 111112233344444444 332 222111111 2344567899999999999999999876522 121111 111122
Q ss_pred HHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.+-...+++..||+..|...+.++...... ++ +.... -+...+..+...++|-+|...|.++...
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~---~~~~~-~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NN---HFLQG-QWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCT-TC---GGGHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCC-cc---hhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 223456688999999999999888653211 11 11011 1244588888999999999999888654
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.22 E-value=1.7 Score=39.21 Aligned_cols=200 Identities=5% Similarity=-0.098 Sum_probs=105.1
Q ss_pred cCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCC
Q psy292 35 EGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTP 114 (452)
Q Consensus 35 ~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~ 114 (452)
+|++++|++.+....+... .+.+....++..++..++..|+++...+.+............+ ......-+ ....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~-~~~~ 91 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRA--LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV---FNYLGIYL-TQAG 91 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHH-HHTT
T ss_pred cchHHHHHHHHHHHHhccc--ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH---HHHHHHHH-HHcc
Confidence 3557788887777444321 2334456788889999999999998888776655432111111 11111111 1122
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc
Q psy292 115 SKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAK 194 (452)
Q Consensus 115 ~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~ 194 (452)
+.+.-++.++......++. ...-..++.++...|++++|...++....- ..... .......++...
T Consensus 92 ~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~------~~~~~~~~~~~~ 157 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDP------FRSLWLYLAEQK 157 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCh------HHHHHHHHHHHh
Confidence 3333344444332233322 234466788888899999999888876532 11111 111122234555
Q ss_pred cChHHHHHHHHHhhhhhccCC------------CCc-------------hHH---HHHHHHHHHHHHHHHhhhHHHHHHH
Q psy292 195 KDYIRTQIISKKINTKFFDDE------------KDD-------------VQE---LKLKYYRLMIELDQHEGSYLATCKH 246 (452)
Q Consensus 195 ~d~~~a~~~~~K~~~~~~~~~------------~~~-------------~~~---lk~~~~~~~~~~~~~~~df~ea~~~ 246 (452)
+++..|.....++....-... ++. .+. .....+...|..+...++|-+|..+
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777666655543210000 000 000 1123344557777777777777777
Q ss_pred HHHHHcCC
Q psy292 247 YRAILTTP 254 (452)
Q Consensus 247 y~e~~~t~ 254 (452)
|..+....
T Consensus 238 ~~~al~~~ 245 (275)
T 1xnf_A 238 FKLAVANN 245 (275)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 77776543
No 75
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.18 E-value=1.6 Score=38.91 Aligned_cols=169 Identities=9% Similarity=-0.017 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
..+...++..++..|+++...+.+........... .....+........+.+.-.+.++.......+. .
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYRKALASDSRN-------A 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------H
Confidence 56778888888888888888777665553211110 111111111111223333344444332222221 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.+...++.++...|++++|.+.++.+.. .. ........+.....++...+++..|.....++.... ++. ..
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~ 176 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQ---DT-LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQ--PS 176 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT---CT-TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCC--HH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh---Cc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---ccc--HH
Confidence 3456678899999999999999887653 10 112345677777888999999999998888876553 222 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. +...+..+...++|-+|...|..+....
T Consensus 177 ~----~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 177 V----ALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 3445788888899999999999887654
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.15 E-value=0.62 Score=41.50 Aligned_cols=139 Identities=12% Similarity=-0.008 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
.++...+..++..|+++.-.+.+........ .++. .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~-------------------------~ 43 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------------NQDS-------------------------V 43 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------------------TCCH-------------------------H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------------------CCCc-------------------------H
Confidence 5678888899999999888776655443110 0110 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-..++..+...|++++|...++..... ...-...+.....++...+++..|....+++.......+.. +..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~ 115 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKK------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI--EKL 115 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH--HHH
Confidence 2233789999999999999999876521 11245678888999999999999999999987764221111 222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
....+...|..+...++|-+|-.+|..++..
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 3355677899999999999999999999764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.14 E-value=1.2 Score=37.12 Aligned_cols=162 Identities=8% Similarity=-0.024 Sum_probs=108.1
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQE 105 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~ 105 (452)
...+......|++++|++.+....+.. +. ...+...++.+++..|+++...+.+....+.
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------- 71 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD--AF----DVDVALHLGIAYVKTGAVDRGTELLERSLAD-------------- 71 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT--SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--cc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------
Confidence 334555667788888887775555432 11 1356777788888888877766555443321
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 106 CVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
.|+. ..+...++.++...|++++|.+.++....- .. .-...++
T Consensus 72 -------~~~~------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~ 114 (186)
T 3as5_A 72 -------APDN------------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NP-----INFNVRF 114 (186)
T ss_dssp -------CTTC------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT-----TCHHHHH
T ss_pred -------CCCC------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-Cc-----HhHHHHH
Confidence 1110 123355788899999999999999876532 11 1235677
Q ss_pred HHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 186 EQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 186 e~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
...+++...+++..|.....++.... ++. +. .+...+..+...++|-+|..+|..+...
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALGLR---PNE--GK----VHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcC---ccc--hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88889999999999999998887653 222 22 2344588888899999999998887543
No 78
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.05 E-value=0.6 Score=37.16 Aligned_cols=102 Identities=8% Similarity=-0.003 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..+|..+...|++++|...++.+... ... .....+.++....++...|++..|.....++.......+ . ..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~----~--~~ 76 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL-YPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD----K--AA 76 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----T--HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH-CCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----c--cH
Confidence 45688999999999999999987642 221 123346777888999999999999999998876542211 0 11
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
..+...|..+...++|-+|...|..+...++
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 2233458888899999999999999877653
No 79
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.00 E-value=2.7 Score=40.46 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..++.++...|++++|...+.....- . + .-...+.....++...+++..|....+++.... ++. ++.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~--~---p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~--~~~-- 273 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSL--S---P-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---PHF--PDA-- 273 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHH--C---T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---SSC--HHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--C---c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC--HHH--
Confidence 45566666667777766666554321 0 0 112345555666777777777777777665432 222 222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCCh-hh-hHhHHhhhhhhccCC-chH
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDN-EQ-SDLTHRVLEDKLLNE-IPL 301 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~-~~-~~ll~~~~~~~~~~~-ip~ 301 (452)
+...+..+...++|-+|...|..+...... + .. ++..+. .++...+. +. ...+.+..+ ..+. .+.
T Consensus 274 --~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~-~~---~~~~l~--~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 341 (388)
T 1w3b_A 274 --YCNLANALKEKGSVAEAEDCYNTALRLCPT--H-AD---SLNNLA--NIKREQGNIEEAVRLYRKALE--VFPEFAAA 341 (388)
T ss_dssp --HHHHHHHHHHHSCHHHHHHHHHHHHHHCTT--C-HH---HHHHHH--HHHHTTTCHHHHHHHHHHHTT--SCTTCHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--c-HH---HHHHHH--HHHHHcCCHHHHHHHHHHHHh--cCCCcHHH
Confidence 234466777777777777777777654321 1 11 111111 11112111 11 122222222 1122 234
Q ss_pred HHHHHHHhcCCcccCchhHHHHHHHHhccCCCC
Q psy292 302 YKGLLQWFTNPELIKWSGLRQLYEEELFKTSVF 334 (452)
Q Consensus 302 ~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~ 334 (452)
+..+...|... -++++....|+..+.-+|-+
T Consensus 342 ~~~l~~~~~~~--g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 342 HSNLASVLQQQ--GKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHHHHTT--TCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 55666666544 25666667777777655544
No 80
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.86 E-value=0.93 Score=37.01 Aligned_cols=101 Identities=14% Similarity=-0.040 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
+.+..-..++..+...|+|++|.+.++.... .. ..-.+.+.....++...|++..|.....++...- ++.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~- 80 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK-RD-----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKF- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhh-
Confidence 4555566789999999999999999987542 11 1224677888899999999999999999887652 332
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+ .. +...|..+...++|-+|...|..++...
T Consensus 81 -~--~a--~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 81 -I--KG--YIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp -H--HH--HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -h--HH--HHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 2 22 3445899999999999999999997754
No 81
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.84 E-value=2.7 Score=39.64 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=37.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLT 89 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~ 89 (452)
-++.....|+++.|+..+ ++ .+.. ...++..++..+...++++...+.+..+.
T Consensus 40 l~r~yi~~g~~~~al~~~---~~-----~~~~-~~~a~~~la~~~~~~~~~~~A~~~l~~ll 92 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEI---KP-----SSAP-ELQAVRMFAEYLASHSRRDAIVAELDREM 92 (291)
T ss_dssp HHHHHHHTTCHHHHHHHS---CT-----TSCH-HHHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHh---cc-----cCCh-hHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 366677788888888755 22 1112 35778888888888888888888777665
No 82
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.80 E-value=1.6 Score=41.45 Aligned_cols=207 Identities=9% Similarity=-0.094 Sum_probs=119.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-----------------
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR----------------- 91 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~----------------- 91 (452)
+......|++++|++.+....+.. +. ...+...++.++...|+++...+.+......
T Consensus 105 ~~~~~~~g~~~~A~~~~~~al~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 1fch_A 105 GTTQAENEQELLAISALRRCLELK--PD----NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred HHHHHHCcCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh
Confidence 344556788899998887743322 12 2357888999999999999988877654431
Q ss_pred ---------------hhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH---HhhcCcchHHH------HHHHHHHHH
Q psy292 92 ---------------RSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLR---TVTEGKIYVEV------ERARLTHIL 147 (452)
Q Consensus 92 ---------------~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~---~~~e~ki~lE~------er~~l~~~L 147 (452)
.|....|+ ...+.++..-+..++......+..... ...+..-+++. .....-..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 257 (368)
T 1fch_A 179 AGLGPSKRILGSLLSDSLFLEVK-ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 257 (368)
T ss_dssp -------CTTHHHHHHHHHHHHH-HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccHHHHHHHHHhhcccHHHHH-HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 12222221 123333332222112222222211111 00000111110 012355678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH-----
Q psy292 148 AKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL----- 222 (452)
Q Consensus 148 a~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l----- 222 (452)
+.++...|++++|...++....- .. .-...+.....++...|++..|....+++........+ +..
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~ 328 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALEL-QP-----GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG---PRGEGGAM 328 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------CCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC---ccccccch
Confidence 99999999999999999886531 11 22467788899999999999999999998765422211 111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
....+...+..+...+++-+|...+...+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 12334556777888888888877766543
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.77 E-value=1.1 Score=40.78 Aligned_cols=105 Identities=7% Similarity=-0.043 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.....+|..+...|++++|...++.+... +.. .....+.++....+++..|++..|.....++.......+. .
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~ 88 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTY-GRT--HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR----V 88 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGG-CSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCC--CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch----h
Confidence 34567799999999999999999987632 211 1244678888899999999999999999998876522222 1
Q ss_pred HHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHcCCC
Q psy292 222 LKLKYYRLMIELDQH--------EGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 222 lk~~~~~~~~~~~~~--------~~df~ea~~~y~e~~~t~~ 255 (452)
-... ...|..+.. .++|-+|...|..++..++
T Consensus 89 ~~a~--~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 89 PQAE--YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHH--HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHH--HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 1222 334777777 8999999999999987654
No 84
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.77 E-value=0.87 Score=34.89 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
+..-..++..+...|++++|...++..... .. .-...+.....++...+++..|.....++.... ++. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~--~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-DP-----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDW--G 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC--H
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CC-----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---ccc--H
Confidence 344567799999999999999999986532 11 124577888889999999999999999887653 322 2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.. +...+..+...++|-+|...|..+....
T Consensus 73 ~~----~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 73 KG----YSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HH----HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HH----HHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 22 3345788888999999999999998764
No 85
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.73 E-value=1.3 Score=39.03 Aligned_cols=161 Identities=7% Similarity=-0.005 Sum_probs=103.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECV 107 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~ 107 (452)
.+......|++++|++.+....+... . ...+...++.++...|+++...+.+....+....-... ... ..
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~-~a 132 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDS--S----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL---FYM-LG 132 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHH---HHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC--c----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH---HHH-HH
Confidence 34455678889999998877443221 1 23567888999999999999988877766432111111 111 11
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q psy292 108 TYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQ 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~ 187 (452)
.......+.+.-...++......++. ..+...++.++...|++++|...++..... .. .....+...
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~l 199 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNEND-------TEARFQFGMCLANEGMLDEALSQFAAVTEQ-DP-----GHADAFYNA 199 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-CT-----TCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----ccHHHHHHH
Confidence 11112233344444444332232222 234567899999999999999999886532 11 124577888
Q ss_pred HHHHhhccChHHHHHHHHHhhhhh
Q psy292 188 MRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 188 ~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.+++...|++..|....+++....
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999887654
No 86
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.65 E-value=2 Score=37.20 Aligned_cols=198 Identities=9% Similarity=-0.036 Sum_probs=124.2
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
....+......|++++|++.+....+... .+ ..+...++.++...|+++...+.+........... ....
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 80 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDP--KN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----EINN 80 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHH
Confidence 34556667788999999998887443221 22 34678889999999999999888776654321111 1111
Q ss_pred HHHhhhcCC-CCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 105 ECVTYVDKT-PSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
......... .+.+.-...++.... ..... ....+...++.++...|++++|...++..... .. .-...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~ 149 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALA-DPTYP----TPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QP-----QFPPA 149 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT-STTCS----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHc-CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----CCchH
Confidence 111222233 344444444443222 11110 12345577899999999999999999886532 11 12467
Q ss_pred HHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
+....+++...+++..|....+++..... .+. ... +...+.++...+++.+|..++..+.
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~--~~~----~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVE--VLQ--ADD----LLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SCC--HHH----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCC--HHH----HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 78889999999999999999998876541 022 222 2344667777778777766666654
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.52 E-value=2.6 Score=37.98 Aligned_cols=240 Identities=10% Similarity=0.029 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
.++...+..++..|+++...+.+....+....-..+ ......-+. ...+.+.-+..++...... +...+ ...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~-~~~~~~~A~~~~~~a~~~~-~~~~~---~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI---YNRRAVCYY-ELAKYDLAQKDIETYFSKV-NATKA---KSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTT---HHHHHHHHH-HTTCHHHHHHHHHHHHTTS-CTTTC---CHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHH-HHhhHHHHHHHHHHHHhcc-CchhH---HHH
Confidence 356778889999999999988877665432111001 111111111 1222333334444222211 11111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-..++.++...|++++|.+.++....- .. ...+.+.....++...+++..|....+++.... ++. +..
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~--~~~ 144 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDR-DT-----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTD--PKV 144 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCC--HHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc-Cc-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCc--HHH
Confidence 4577899999999999999999886532 11 123578888999999999999999999887652 333 222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCC---CChhhhHhHHhhhh-hhccCC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAP---YDNEQSDLTHRVLE-DKLLNE 298 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~---~~~~~~~ll~~~~~-~~~~~~ 298 (452)
+...+...-...+|-+|-.+|..++...+. + . ...+....++..+.+ ++.-.. .+.+... .+..+.
T Consensus 145 ----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~-~--~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 145 ----FYELGQAYYYNKEYVKADSSFVKVLELKPN--I-Y--IGYLWRARANAAQDPDTKQGLAKP-YYEKLIEVCAPGGA 214 (272)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C-H--HHHHHHHHHHHHHSTTCSSCTTHH-HHHHHHHHHGGGGG
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--c-h--HHHHHHHHHHHHcCcchhhHHHHH-HHHHHHHHHhcccc
Confidence 222352222344999999999999876432 2 1 112233444444544 221111 1112111 111111
Q ss_pred ------chHHHHHHHHhcCCcccCchhHHHHHHHHhccCCC
Q psy292 299 ------IPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSV 333 (452)
Q Consensus 299 ------ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~ 333 (452)
...+..+...|... -.+......|...+.-+|-
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTIN--RDKVKADAAWKNILALDPT 253 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcc
Confidence 12445566666443 2455666677777654443
No 88
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.47 E-value=1.1 Score=36.13 Aligned_cols=101 Identities=12% Similarity=-0.017 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..++..+...|++++|...++..... .-+.......+.....++...+++..|.....++.... +++ .
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~--~- 99 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGD--V- 99 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCC--H-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccC--H-
Confidence 34567799999999999999999986521 11223457888888999999999999999998887653 322 2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.. +...+..+...++|-+|...|..++...
T Consensus 100 -~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 -KA--LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp -HH--HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -HH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22 3345888888999999999999987654
No 89
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.33 E-value=1.4 Score=34.25 Aligned_cols=100 Identities=7% Similarity=-0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
....-..++..+...|++++|...++..... .. .-...+.....++...+++..|.....++.... +++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~-- 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NP-----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAY-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CC-----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccC--
Confidence 4455677899999999999999999886532 11 114577788889999999999999999887653 332
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.. .+...|..+...++|-+|...|..++...
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 80 SK----AYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HH----HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 22 23445888899999999999999987654
No 90
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.13 E-value=0.81 Score=38.64 Aligned_cols=101 Identities=6% Similarity=-0.064 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+..-..++..+...|++++|...++....- .. .-..++.....+++..+++..|...+.++...- +++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~-- 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-AP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD---PKY-- 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCC--
Confidence 4455677899999999999999999886532 11 125678888999999999999999999887653 332
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
+ .. +...+..+...++|-+|..+|..++....
T Consensus 79 ~--~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 79 S--KA--WSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp H--HH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred H--HH--HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 2 22 34458889999999999999999976643
No 91
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.06 E-value=1.1 Score=37.75 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-----Ccc-------hHHHHHHHHHHHHHHhhccChHHHHHHHHHh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYG-----SME-------KKEKVTLILEQMRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~-----~~~-------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~ 207 (452)
.+..-..++..+...|+|.+|...+.....-... .-+ .......++....+++..+++..|.....++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455577899999999999999988875531100 000 3456678888899999999999999999988
Q ss_pred hhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 208 NTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 208 ~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
...- ++. + +.. ...|..+...++|-+|...|..++..
T Consensus 90 l~~~---p~~--~--~a~--~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE---ETN--E--KAL--FRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS---TTC--H--HHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC---Ccc--h--HHH--HHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 7652 333 2 333 34588899999999999999988654
No 92
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.02 E-value=1.4 Score=36.28 Aligned_cols=100 Identities=12% Similarity=-0.016 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.+..-..+|..+...|++++|...+...... .. .-.+.+.....++...+++..|.....++.... ++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~-- 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-NP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKY-- 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccc--
Confidence 4556678899999999999999999886532 11 125677888889999999999999999887653 332
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+. .+...|..+...++|-+|..+|..++...
T Consensus 81 ~~----~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 81 IK----GYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HH----HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22 23445888899999999999999987654
No 93
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.02 E-value=1.6 Score=34.79 Aligned_cols=98 Identities=12% Similarity=-0.032 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
+..-..++..+...|++++|...+.....- .. .-...+.....+++..+++..|.....++...- ++. +
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~--~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-AP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNF--V 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--H
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc--H
Confidence 344467799999999999999999876532 11 124678888999999999999999999887653 332 2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
.. +...|..+...++|-+|...|..++..
T Consensus 73 --~~--~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 73 --RA--YIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp --HH--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HH--HHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 22 344588889999999999999988654
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.66 E-value=2.6 Score=34.91 Aligned_cols=127 Identities=9% Similarity=-0.034 Sum_probs=86.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECV 107 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~ 107 (452)
.+......|++++|++.+....+.. +. ...+...++.+++..|+++...+.+....+.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------- 105 (186)
T 3as5_A 48 LGIAYVKTGAVDRGTELLERSLADA--PD----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA---------------- 105 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------
Confidence 3445567888999998877744322 11 1346777888899999988876655443321
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q psy292 108 TYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQ 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~ 187 (452)
.|+. ......++.++...|++++|...++..... .. .....+...
T Consensus 106 -----~~~~------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~l 150 (186)
T 3as5_A 106 -----NPIN------------------------FNVRFRLGVALDNLGRFDEAIDSFKIALGL-RP-----NEGKVHRAI 150 (186)
T ss_dssp -----CTTC------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHH
T ss_pred -----CcHh------------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-Cc-----cchHHHHHH
Confidence 1110 123356788899999999999999886532 11 114677788
Q ss_pred HHHHhhccChHHHHHHHHHhhhhh
Q psy292 188 MRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 188 ~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.+++...|++..|....+++....
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 889999999999999888886543
No 95
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=93.59 E-value=0.86 Score=35.99 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-..++..+...|++++|...++..... .. .-.+.+.....++...+++..|.....++.... ++. +.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~--~~- 85 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR-NP-----KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTF--IK- 85 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT-CT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTC--HH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCc--hH-
Confidence 3356799999999999999999886521 11 125678888999999999999999999887653 222 22
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.+...+..+...++|-+|..+|..++...
T Consensus 86 ---~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 86 ---GYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 23445888889999999999999987643
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.56 E-value=0.38 Score=40.63 Aligned_cols=98 Identities=9% Similarity=-0.084 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
+...-..||.+|...|++++|.+.++....- .. .-.+.+.....++...+++..|....+++...- |++
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~p-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~-- 98 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV-QE-----RDPKAHRFLGLLYELEENTDKAVECYRRSVELN---PTQ-- 98 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CCC--
Confidence 4444567899999999999999999876521 11 224677788889999999999999999887653 443
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHc
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRA-ILT 252 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e-~~~ 252 (452)
++. +...|..+...++|.+|++.|.+ ++.
T Consensus 99 ~~~----~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 99 KDL----VLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHH----HHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 333 33458888888899899888753 443
No 97
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.45 E-value=6.5 Score=39.78 Aligned_cols=192 Identities=9% Similarity=-0.078 Sum_probs=114.8
Q ss_pred HHHHHhcCCc-HHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy292 29 AIKMAAEGKF-HDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECV 107 (452)
Q Consensus 29 ~~~~~~~~~~-~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~ 107 (452)
+......|++ ++|++.+...-+.. +.+ ..+...++.+|+..|+++...+.+......... + .-..+...
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~--p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~-~~~~~lg~ 178 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLE--PEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---K-VSLQNLSM 178 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---H-HHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---H-HHHHHHHH
Confidence 3344456788 99998887733321 111 357788999999999999998887776653322 1 11111111
Q ss_pred hhhcCC--CC-------HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHH
Q psy292 108 TYVDKT--PS-------KEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDE--------GDVTEAANIIQELQVE 170 (452)
Q Consensus 108 ~~~~~~--~~-------~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~--------gd~~eA~~iL~~l~~E 170 (452)
-+. .. .+ .+.-+..++......++. ...-..|+.++... |++++|...++....-
T Consensus 179 ~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 179 VLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 111 11 11 112222233222222221 22345678888888 9999999999886531
Q ss_pred hccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 171 TYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 171 t~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
... ...-.+.+.....++...+++..|...++++...- ++. ++. +...+..+...+++-+|...|..+
T Consensus 251 -~p~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~--~~a----~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 251 -DRK--ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---PAW--PEP----QQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -CGG--GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HHH----HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -CCC--cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HHH----HHHHHHHHHHHHHHHHHHHHhccc
Confidence 110 11456778888999999999999999999987664 333 332 223366666677777777765443
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.40 E-value=0.55 Score=45.73 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=114.1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy292 28 AAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECV 107 (452)
Q Consensus 28 ~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~ 107 (452)
.++...=.|++..+++.. .+-.. .++. .+...+.+-+...|+++.- +++ ....+.|+...
T Consensus 19 ~ikn~fy~G~yq~~i~e~---~~~~~-~~~~----~~~~~~~Rs~iAlg~~~~~------~~~------~~~~~a~~~la 78 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEI---EKFSK-VTDN----TLLFYKAKTLLALGQYQSQ------DPT------SKLGKVLDLYV 78 (310)
T ss_dssp HHHHHHTTTCHHHHTHHH---HTSSC-CCCH----HHHHHHHHHHHHTTCCCCC------CSS------STTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH---HhcCc-cchH----HHHHHHHHHHHHcCCCccC------CCC------CHHHHHHHHHH
Confidence 567777788899999854 33221 1221 3556666777777776531 111 11123466666
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcC--cchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHH
Q psy292 108 TYVDKTPSKEIKVKLIETLRTVTEG--KIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLIL 185 (452)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~L~~~~e~--ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~L 185 (452)
+|+++ +. +..+....++ .... ....+|.+++..|++++|.+.+.... +.-+...-++.++
T Consensus 79 ~~~~~-~a-------~~~l~~l~~~~~~~~~------~~~~la~i~~~~g~~eeAL~~l~~~i----~~~~~~~~lea~~ 140 (310)
T 3mv2_B 79 QFLDT-KN-------IEELENLLKDKQNSPY------ELYLLATAQAILGDLDKSLETCVEGI----DNDEAEGTTELLL 140 (310)
T ss_dssp HHHTT-TC-------CHHHHHTTTTSCCCHH------HHHHHHHHHHHHTCHHHHHHHHHHHH----TSSCSTTHHHHHH
T ss_pred HHhcc-cH-------HHHHHHHHhcCCCCcH------HHHHHHHHHHHcCCHHHHHHHHHHHh----ccCCCcCcHHHHH
Confidence 66642 21 2333322221 1111 12578999999999999999998742 1111136789999
Q ss_pred HHHHHHhhccChHHHHHHHHHhhhhhccCCC--CchHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCC
Q psy292 186 EQMRLCLAKKDYIRTQIISKKINTKFFDDEK--DDVQELKLKYYRLMIELDQHEG--SYLATCKHYRAILTTPC 255 (452)
Q Consensus 186 e~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~--~~~~~lk~~~~~~~~~~~~~~~--df~ea~~~y~e~~~t~~ 255 (452)
..+++++..|+...|...+++....- ++ . .+--+..+...+.+..+.+ +|.+|+..|.|+.+.++
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~~---~d~~~--~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNAI---EDTVS--GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHH--HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---ccccc--cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 99999999999999999998774432 10 0 0123334444565555555 99999999999988764
No 99
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.34 E-value=2 Score=34.27 Aligned_cols=97 Identities=6% Similarity=-0.130 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..++..+...|++++|...++....- .. .-..++.....++...+++..|.....++.... +++ +.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~--~~ 78 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR-NP-----LVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQS--VK 78 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh-Cc-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chh--HH
Confidence 34467799999999999999999876532 11 124678888999999999999999999887653 333 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. +...|..+...++|-+|-..|..++..
T Consensus 79 --~--~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 --A--HFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp --H--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 344588888999999999999888643
No 100
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.24 E-value=4.1 Score=35.90 Aligned_cols=160 Identities=10% Similarity=-0.003 Sum_probs=98.4
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
..+..+......|++++|++.+....+... ..+. .+...++..++..|+++...+.+....+...... ...
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~ 79 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA----NAY 79 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH----HHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH----HHH
Confidence 456777788889999999998887443221 0221 4566689999999999999988877765332221 111
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
...........+.+.-+..++......++...+....+.+-..++.++...|++++|.+.++.... .-+...-.+.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~ 155 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD----VTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SSCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh----cCCCcccHHH
Confidence 111111122334444555555444455555545455566778889999999999999999987542 1122113455
Q ss_pred HHHHHHHHhhccC
Q psy292 184 ILEQMRLCLAKKD 196 (452)
Q Consensus 184 ~Le~~rl~l~~~d 196 (452)
+.....+++..++
T Consensus 156 ~~~l~~~~~~~~~ 168 (228)
T 4i17_A 156 LYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555666654443
No 101
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.11 E-value=1.6 Score=35.96 Aligned_cols=97 Identities=10% Similarity=-0.082 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.....++..+...|++++|...++.+..- .. .-..++.....++...+++..|...+.++...- +++ +.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~--~~ 87 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DH----YDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INE--PR 87 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--TH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CC----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCC--cH
Confidence 34467799999999999999999886532 11 124567778889999999999999999987663 332 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. +...|..+...++|-+|...|..++..
T Consensus 88 ~----~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 88 F----PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 234588899999999999999888654
No 102
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.11 E-value=2.9 Score=42.31 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=78.2
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHH-Hhhhhc-cCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLA-LEKQTR-TGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK 101 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~-lek~~r-~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~ 101 (452)
..++.++.+.+.|++++|++.+.. ++...+ .+.+...+-+++..++.+|...|+|+....+......-+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--------- 359 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--------- 359 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH---------
Confidence 455666777778899999998776 665433 377888999999999999999999999977765444210
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
... -|.-... .+..-..||.+|...|++++|..+++...
T Consensus 360 -----~~~---------------------lg~~Hp~--~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 360 -----RIF---------------------FPGSHPV--RGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -----HHH---------------------SCSSCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHH---------------------cCCCChH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 011 1111121 45566788999999999999999887644
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.86 E-value=1.7 Score=36.41 Aligned_cols=98 Identities=12% Similarity=-0.099 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
......++..+...|++++|...++.+..- .. .-.+++.....++...+++..|...++++...- +++ +
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~--~ 89 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DH----YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXE--P 89 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC--T
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--Cc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCC--c
Confidence 334566799999999999999999876532 11 124566777888999999999999999987653 332 2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. . +...|..+...++|-+|-.+|..++..
T Consensus 90 ~--~--~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 90 R--F--PFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp H--H--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h--H--HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 2 234588999999999999999988654
No 104
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.80 E-value=1.5 Score=44.49 Aligned_cols=107 Identities=8% Similarity=0.031 Sum_probs=75.0
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHH-Hhhhhc-cCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLA-LEKQTR-TGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKM 102 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~-lek~~r-~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~ 102 (452)
.+++.+..-+.|++++|++.+.. |+...+ .+.+...+-.++..++.+|..+|+|+....+......-+
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~---------- 370 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY---------- 370 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH----------
Confidence 34445555556788999997766 554433 478889999999999999999999999877665444210
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 103 IQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
. .. -|.-..+ .+..-..||.+|...|++++|..+++...
T Consensus 371 -~---~~---------------------lG~~Hp~--~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 371 -S---KH---------------------YPVYSLN--VASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp -H---HH---------------------SCSSCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -H---HH---------------------cCCCChH--HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 0 11 1111111 34455788999999999999999987643
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.79 E-value=3.5 Score=33.81 Aligned_cols=132 Identities=9% Similarity=-0.075 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
....+..++..++..|+++.....+...... .|+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~~~~------------------------ 46 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL---------------------NPSN------------------------ 46 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STTC------------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCCC------------------------
Confidence 4457888889999999988886665444321 1110
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
..+...++.++...|++++|...+.....- .. .-...+.....++...+++..|.....++.... +++ +
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~--~ 115 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIEL-DK-----KYIKGYYRRAASNMALGKFRAALRDYETVVKVK---PHD--K 115 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC--H
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCC--H
Confidence 223456788999999999999999876532 11 124567788888999999999999999887653 333 3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 221 ELKLKYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 221 ~lk~~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
..... ...+..+...++|.+|...|...
T Consensus 116 ~~~~~--~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 116 DAKMK--YQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHcccch
Confidence 33322 22344455678888888777655
No 106
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.77 E-value=3.9 Score=36.31 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
.+...++..++..|+++.-...+....+.-.....+ ......-+. ...+.+.-+..++..-...++. ..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~-------~~ 74 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA---LYWLARTQL-KLGLVNPALENGKTLVARTPRY-------LG 74 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH---HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-------HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCc-------HH
Confidence 356778888999999998887776655422111111 111111111 1222233333333322333322 22
Q ss_pred HHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 143 LTHILAKMKEDE-----------GDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 143 l~~~La~i~e~~-----------gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
....|+.++... |++++|...++....- .. .-.+.++....++...|++..|....+++...-
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-NP-----RYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-Cc-----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 345668888888 9999999999876531 11 123567777888999999999999999987764
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 212 FDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 212 ~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. + ++. +...|..+...++|-+|...|..++...
T Consensus 149 -~---~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 149 -D---T--PEI----RSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp -C---C--HHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -c---c--hHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 2 333 2345888899999999999999987643
No 107
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.69 E-value=6.9 Score=38.32 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=84.9
Q ss_pred hhhhhHHHHHHHhcCCc---HHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHH
Q psy292 22 CDEKIPAAIKMAAEGKF---HDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQA 98 (452)
Q Consensus 22 ~~~~~~~~~~~~~~~~~---~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~a 98 (452)
.+.++.+-+.-.++|++ =+|...+..+-..-.........-.+|.+=+..+.+.|++.--.|+...+..--.+-+..
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~ 91 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR 91 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 34566777777778888 677777777654333345555556677777788888888877777655555321111100
Q ss_pred H-HHHHHHHHhhhcCCCCH-HHHHHHHH-HH-HHhhcCc-chHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy292 99 V-VKMIQECVTYVDKTPSK-EIKVKLIE-TL-RTVTEGK-IYVEVERARLTHILAKMKEDEGDVTEAANI 163 (452)
Q Consensus 99 v-~~~v~~~~~~~~~~~~~-~~~~~l~~-~L-~~~~e~k-i~lE~er~~l~~~La~i~e~~gd~~eA~~i 163 (452)
+ ...+..+++.+..+|.. ..+..++. ++ |....|. -+= .-.|-..+|.+|.++|++.+|-.-
T Consensus 92 ~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G---dp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 92 VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG---DPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHccCCHHHHHHH
Confidence 1 12455555556666653 56788888 55 7776432 111 223556789999999999888543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=92.65 E-value=3.5 Score=35.07 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=99.5
Q ss_pred hhhhHHHHHHHhcCCcHHHHHHHHH-HhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH
Q psy292 23 DEKIPAAIKMAAEGKFHDAIDSLLA-LEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK 101 (452)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~a~~~l~~-lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~ 101 (452)
+..+..+..+...|++++|+..+.. ++..+ . ...+...++.++...|+++.-...+........ - .....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ---S----RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKS 77 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH---T----SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---C----cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHH
Confidence 3467788888999999999998877 33322 1 245788899999999999999887766543321 0 11111
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHH
Q psy292 102 MIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKV 181 (452)
Q Consensus 102 ~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~ 181 (452)
+. ..+.........+ -+..++......++. ......|+.++...|++++|...++.+..- .. .....
T Consensus 78 ~~-~~~~~~~~~~~~~-a~~~~~~al~~~P~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p---~~~~~ 144 (176)
T 2r5s_A 78 LI-AKLELHQQAAESP-ELKRLEQELAANPDN-------FELACELAVQYNQVGRDEEALELLWNILKV-NL---GAQDG 144 (176)
T ss_dssp HH-HHHHHHHHHTSCH-HHHHHHHHHHHSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CT---TTTTT
T ss_pred HH-HHHHHHhhcccch-HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-Cc---ccChH
Confidence 10 0011111000001 123333222223322 235567899999999999999999876521 11 11112
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..+.....++...|++..|...++++...
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 34445567788889999888888777543
No 109
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.59 E-value=2.3 Score=33.52 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=71.2
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
.+..+....+.|++++|++.+..+.+.. .+......+...++.+++..|+++...+.+..+...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~------------- 68 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR------------- 68 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------------
Confidence 4567778888999999999988855432 233444568889999999999999887666554431
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQV 169 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~ 169 (452)
-|+.. + .......++.++...|++++|...++.+..
T Consensus 69 --------~p~~~-----------------~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 69 --------YPTHD-----------------K----AAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --------CTTST-----------------T----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------CCCCc-----------------c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12210 0 122445679999999999999999998763
No 110
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.57 E-value=1.8 Score=37.67 Aligned_cols=104 Identities=13% Similarity=-0.047 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc-----------hHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME-----------KKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~-----------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
.+..-..++..+...|++++|...+.....- ..... ...+...+.....+++..+++..|.....++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455577899999999999999999886531 11111 11235788888999999999999999999887
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 209 TKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 209 ~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..- ++. . +. +...|..+...++|-+|..+|..++..
T Consensus 116 ~~~---p~~--~--~~--~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 116 KID---KNN--V--KA--LYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHS---TTC--H--HH--HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhC---ccc--H--HH--HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 653 332 2 33 344588889999999999999988655
No 111
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.57 E-value=1.9 Score=34.68 Aligned_cols=94 Identities=13% Similarity=-0.083 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..++..+...|++++|...++..... .. .-.+.++....++...+++..|....+++...- +++ .+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~-~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~--~~~-- 87 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK-EP-----EREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKD--IAV-- 87 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HHH--
Confidence 45688899999999999999886532 11 224677778888999999999999999887663 333 332
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+...+..+...++|-+|...|..++..
T Consensus 88 --~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 --HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334588888999999999999998754
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.57 E-value=2.8 Score=32.17 Aligned_cols=98 Identities=14% Similarity=0.032 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..++..+...|++++|.+.+...... .. .-...+.....++...+++..|....+++.... ++. ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~ 78 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNN--AE 78 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Cc-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---Ccc--HH
Confidence 34466789999999999999999887532 11 123567778889999999999999998887653 322 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. +...+..+...++|-+|...|..+....
T Consensus 79 ~----~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 79 A----WYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 2 3345788888999999999999887653
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.52 E-value=3.4 Score=42.59 Aligned_cols=153 Identities=10% Similarity=-0.007 Sum_probs=91.4
Q ss_pred CCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCC
Q psy292 36 GKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPS 115 (452)
Q Consensus 36 ~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~ 115 (452)
|++++|++.+...-+.. +.+ ..+...++.+++..|+++...+.+...... -|+
T Consensus 3 g~~~~A~~~~~~al~~~--p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~p~ 55 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQD----FVAWLMLADAELGMGDTTAGEMAVQRGLAL---------------------HPG 55 (568)
T ss_dssp --------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------------------STT
T ss_pred ccHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC
Confidence 45667776665532211 122 356788899999999998876665544421 121
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc
Q psy292 116 KEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK 195 (452)
Q Consensus 116 ~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~ 195 (452)
.......|+.++...|++++|.+.++....- .. .-.+.+.....++...+
T Consensus 56 ------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 56 ------------------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDA-AP-----EHPGIALWLGHALEDAG 105 (568)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTT
T ss_pred ------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHcC
Confidence 1123356788888999999999888876532 11 11456777788888999
Q ss_pred ChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHcCC
Q psy292 196 DYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHE---GSYLATCKHYRAILTTP 254 (452)
Q Consensus 196 d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~---~df~ea~~~y~e~~~t~ 254 (452)
++..|...++++.... +++ .+. +...+..+... +++-+|...|.+++...
T Consensus 106 ~~~~A~~~~~~al~~~---p~~--~~~----~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLL---PEE--PYI----TAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CHHHHHHHHHHHHHHC---TTC--HHH----HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC---CCC--HHH----HHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999988888887653 332 222 23346677777 88888888888887654
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=92.45 E-value=4.4 Score=34.17 Aligned_cols=98 Identities=8% Similarity=0.034 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-HhhccCh--HHHHHHHHHhhhhhccCCCCch
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRL-CLAKKDY--IRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl-~l~~~d~--~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
.-..++.++...|++++|...++....- ... -...+.....+ +...+++ ..|...+.++.... +++
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~---p~~-- 114 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQL-RGE-----NAELYAALATVLYYQASQHMTAQTRAMIDKALALD---SNE-- 114 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCS-----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC---TTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC---CCc--
Confidence 4467899999999999999999886532 111 14566677777 7788998 99999988887653 333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
+.. +...+..+...++|-+|...|..++....
T Consensus 115 ~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 115 ITA----LMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHH----HHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHH----HHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 222 33458888899999999999999877643
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=92.26 E-value=1.7 Score=32.92 Aligned_cols=98 Identities=10% Similarity=0.013 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..++.++...|++++|...+.....- .. .-...+.....++...+++..|.....++...... ... ..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~--~~--- 77 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL-DP-----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYN--KD--- 77 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTC--HH---
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh-Cc-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cch--HH---
Confidence 45688999999999999999876532 11 12356778888999999999999999988765311 102 22
Q ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHcCCC
Q psy292 225 KYYRLMIELDQHE-GSYLATCKHYRAILTTPC 255 (452)
Q Consensus 225 ~~~~~~~~~~~~~-~df~ea~~~y~e~~~t~~ 255 (452)
.+...+..+... ++|-+|..+|..+.....
T Consensus 78 -~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 78 -VWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp -HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 234458888889 999999999999977653
No 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.24 E-value=7.5 Score=39.30 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 140 RARLTHILAKMKEDEGDV-TEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~-~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.+..-..++..+...|++ ++|.+.++..... .. .-.+.+.....++...+++..|...+.++...- ++
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-EP-----ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KN-- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CC--
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC--
Confidence 345667789999999999 9999999886532 11 224678888999999999999999999887653 21
Q ss_pred hHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH-hCCCCh---hh-h
Q psy292 219 VQELKLKYYRLMIELDQHE---------GSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLM-LAPYDN---EQ-S 284 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~---------~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~I-La~~~~---~~-~ 284 (452)
...+...+..+... ++|-+|...|.+++..... + ......|-.+..... .....+ +. -
T Consensus 170 -----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 170 -----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--D-GRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp -----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--C-HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 13344557777788 9999999999999876432 2 222222221111110 011111 11 1
Q ss_pred HhHHhhhh-hhcc-CCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHh
Q psy292 285 DLTHRVLE-DKLL-NEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAK 362 (452)
Q Consensus 285 ~ll~~~~~-~~~~-~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~~~~~g~~~~~~L~~~viEhNi~~isk 362 (452)
..+.+... +|.. .....+..+..+|... -+|.+....|+..+.-+|-.. .....+..+.. ...+.....+
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~----~a~~~l~~~~~--~lg~~~eAi~ 313 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYE--ESYGEALEGFSQAAALDPAWP----EPQQREQQLLE--FLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH--HHHHHHHHHH
Confidence 12222222 3311 1223456677776543 357677778888776555431 00011111111 1123334455
Q ss_pred hccceeHHHHHHHh
Q psy292 363 YYTRITLQRMCDLL 376 (452)
Q Consensus 363 ~Ys~Itl~~La~ll 376 (452)
.|.++.-.++.+++
T Consensus 314 ~~~~~~~~~l~~~~ 327 (474)
T 4abn_A 314 SKGKTKPKKLQSML 327 (474)
T ss_dssp HTTTCCHHHHHHHH
T ss_pred HhccccCccHHHHH
Confidence 67888777776655
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.03 E-value=3.1 Score=39.00 Aligned_cols=163 Identities=9% Similarity=0.040 Sum_probs=98.0
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHH-hhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLAL-EKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~l-ek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.+..+..+...|++++|+..+... +..+ .+ ..+...++.++...|+++.-...+..+...... .. ....
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~-~~~~ 189 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSN---QN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--TR-YQGL 189 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTT---SC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HH-HHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCC---cc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hH-HHHH
Confidence 556677778899999999988874 4322 22 357888999999999999998887766543211 11 1112
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
...+.+...-...+ -+..++......++ .......||.++...|++++|...+..+... ... ....+.
T Consensus 190 ~~~~~l~~~~~~~~-a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-~p~---~~~~~a 257 (287)
T 3qou_A 190 VAQIELLXQAADTP-EIQQLQQQVAENPE-------DAALATQLALQLHQVGRNEEALELLFGHLRX-DLT---AADGQT 257 (287)
T ss_dssp HHHHHHHHHHTSCH-HHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT---GGGGHH
T ss_pred HHHHHHHhhcccCc-cHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-ccc---cccchH
Confidence 22222211111111 12222211122222 2245678899999999999999999987642 111 122334
Q ss_pred HHHHHHHHhhccChHHHHHHHHHhhh
Q psy292 184 ILEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 184 ~Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
......++...|+...|...++|+..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 45556667778888888777777654
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.01 E-value=3.7 Score=35.60 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=92.6
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
....+......|++++|++.+...-. . ...+...++.+++..|+++...+.+......
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 66 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR------------- 66 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 34556677788999999998866421 1 2357888999999999998886665443321
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc---------
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM--------- 175 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~--------- 175 (452)
-|+ ....-..++.++...|++++|...++....-..+.-
T Consensus 67 --------~~~------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 67 --------DKH------------------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp --------CTT------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred --------Ccc------------------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 121 012335679999999999999999988653211110
Q ss_pred -chHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 176 -EKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 176 -~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
....-.+.+.....++...|++..|.....++....
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 111345778888999999999999999999887654
No 119
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.86 E-value=2.2 Score=44.04 Aligned_cols=106 Identities=9% Similarity=0.020 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchH--HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKK--EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~--~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
...+.-+..+|+|++|..+++....-..+.+++. .-+..+--.+.+|...|+|..|..+..|+.......-|.++++.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3445667789999999999988764333555554 56667777788999999999999999999765432222112666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
-..|.. .|..+...++|-+|-.+|..++
T Consensus 393 a~~l~n-La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 393 GMAVMR-AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHH
Confidence 555543 6888889999999999998884
No 120
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.76 E-value=0.52 Score=35.42 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 359 VMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 359 ~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
.+++-=+.+.++.||..||++.+++-.-|-.+..+|+|.|.||-....|...+
T Consensus 14 ~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 14 NYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 34455788999999999999999999999999999999999999766776543
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.73 E-value=2.9 Score=35.59 Aligned_cols=100 Identities=10% Similarity=-0.025 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
....-..++..+...|++++|...++.+..- .. .-.+++.-...++...+++..|...+.++...- |++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~-- 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KND-- 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCC--
Confidence 3445577899999999999999999986532 11 224577778888999999999999999998764 332
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
++ . +...|..+...++|-+|-.+|..++...
T Consensus 104 ~~--~--~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 YT--P--VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CH--H--HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cH--H--HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 2 2345889999999999999999997654
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.64 E-value=6.6 Score=34.50 Aligned_cols=173 Identities=9% Similarity=0.055 Sum_probs=92.9
Q ss_pred hhhhhHHHHHHHhcCCcHHHHHHHHHH-hhhhccCC---------chhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Q psy292 22 CDEKIPAAIKMAAEGKFHDAIDSLLAL-EKQTRTGS---------DMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR 91 (452)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~a~~~l~~l-ek~~r~~~---------d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~ 91 (452)
++..+..+..+.+.|++++|++.+... +..+..+. ......++...++.+++..|+++.-...+....+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456778888889999999999988774 33221000 00001112223667777777776665544433321
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy292 92 RSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVET 171 (452)
Q Consensus 92 ~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et 171 (452)
-|+. ...-..|+.++...|++++|...++.+.. .
T Consensus 84 ---------------------~p~~------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~ 117 (208)
T 3urz_A 84 ---------------------APNN------------------------VDCLEACAEMQVCRGQEKDALRMYEKILQ-L 117 (208)
T ss_dssp ---------------------CTTC------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H
T ss_pred ---------------------CCCC------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c
Confidence 1221 12335668888999999999998887652 1
Q ss_pred ccCcchHHHHHHHHHHHHHHhhccC--hHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy292 172 YGSMEKKEKVTLILEQMRLCLAKKD--YIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRA 249 (452)
Q Consensus 172 ~~~~~~~~k~e~~Le~~rl~l~~~d--~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e 249 (452)
... -.+.+.....++...++ ...+....+++. . +. +.--..|. .|..+...++|-+|-.+|..
T Consensus 118 ~P~-----~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~-~~---~~~~a~~~--~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 118 EAD-----NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----S-PT---KMQYARYR--DGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp CTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C-CC---HHHHHHHH--HHHHHHHHHTHHHHHHHHHH
T ss_pred CCC-----CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----C-CC---chhHHHHH--HHHHHHHccCHHHHHHHHHH
Confidence 111 12233333333333332 233333333321 1 21 22222232 36666667889999999998
Q ss_pred HHcCCC
Q psy292 250 ILTTPC 255 (452)
Q Consensus 250 ~~~t~~ 255 (452)
++...+
T Consensus 183 al~l~P 188 (208)
T 3urz_A 183 VILRFP 188 (208)
T ss_dssp HTTTSC
T ss_pred HHHhCC
Confidence 876643
No 123
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.48 E-value=2 Score=42.44 Aligned_cols=105 Identities=7% Similarity=-0.156 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc-----------chHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM-----------EKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~-----------~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
.+..-..+|..+...|++++|...++....- .... ........++....+++..+++..|...++++.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY-VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4445577899999999999999999876531 1110 234567888889999999999999999999887
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 209 TKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 209 ~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
..- ++. .+.. ...|..+...++|-+|..+|..++...
T Consensus 301 ~~~---p~~----~~a~--~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 301 EID---PSN----TKAL--YRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTC---TTC----HHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC---chh----HHHH--HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 653 332 2333 345888889999999999999887553
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.35 E-value=3.5 Score=31.87 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKL 224 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~ 224 (452)
..++..+...|++++|...+...... .. .-...+.....++...+++..|.....++.... ++. ...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~~-- 71 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL-DP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRS--AEA-- 71 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC--HHH--
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc-CC-----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCc--hHH--
Confidence 45788899999999999999886532 11 113456667888899999999999988876543 222 222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+...+..+...++|-+|...|.++...
T Consensus 72 --~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 72 --WYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp --HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 234577888889999999888888654
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.20 E-value=7.7 Score=34.42 Aligned_cols=185 Identities=10% Similarity=0.065 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHH--
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVE-- 139 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~e-- 139 (452)
..++...+..++..|+|+...+.+..+.+....-..+..........+. ...+.+.-+..++.+-...++......-
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4567788889999999999988888777532111000001111111111 1122233333333332222222211000
Q ss_pred -HHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchH----HH--------HHHHHHHHHHHhhcc
Q psy292 140 -RARLT-----------HILAKMKEDEGDVTEAANIIQELQVETYGSMEKK----EK--------VTLILEQMRLCLAKK 195 (452)
Q Consensus 140 -r~~l~-----------~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~----~k--------~e~~Le~~rl~l~~~ 195 (452)
++.+- ..++..+...|++++|...++.+... +..-... .+ .+..+...++++..+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11110 12344555689999999999987642 3111111 11 122356678899999
Q ss_pred ChHHHHHHHHHhhhhhccCCCCchHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 196 DYIRTQIISKKINTKFFDDEKDDVQE-LKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 196 d~~~a~~~~~K~~~~~~~~~~~~~~~-lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
++..|....+++.... |++ +. -... ...+..+...+++-+|...|..+...++
T Consensus 162 ~~~~A~~~~~~~l~~~---p~~--~~~~~a~--~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDY---PDT--QATRDAL--PLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp CHHHHHHHHHHHHHHS---TTS--HHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHHHHC---cCC--CccHHHH--HHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 9999999999887765 332 21 2333 3458889999999999999888766543
No 126
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.63 E-value=5.7 Score=43.04 Aligned_cols=164 Identities=7% Similarity=-0.085 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
..++..++.++.+.|++++-.+.+..........-.+ ..+...-+ ....+.+.-+..++..-.+..+ .+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a---~~nLg~~l-~~~g~~~eA~~~~~~Al~l~P~-------~~ 77 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---HSNLASVL-QQQGKLQEALMHYKEAIRISPT-------FA 77 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH---HHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-------CH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-------CH
Confidence 4567777777777777777766665544321111111 11111111 1112222223333311122222 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..|+.++.+.|++++|.+.++.... ... .-.+.+.....++...|++..|...++++...- ++. .+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~P-----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~--~~ 146 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQ-INP-----AFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDF--PD 146 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCC--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--hH
Confidence 3446789999999999999999987542 111 224567778888999999999999999987653 433 33
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
. +...+..+...++|-+|...|..+.
T Consensus 147 a----~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 147 A----YCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp H----HHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred H----HhhhhhHHHhcccHHHHHHHHHHHH
Confidence 3 2334666777777777777666554
No 127
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.99 E-value=11 Score=34.36 Aligned_cols=205 Identities=10% Similarity=-0.010 Sum_probs=119.1
Q ss_pred HHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh------------------
Q psy292 30 IKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKR------------------ 91 (452)
Q Consensus 30 ~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~------------------ 91 (452)
......|++++|++.+....+.. +.+ ..+...++.++...|+++...+.+....+.
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~--~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLD--PKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDI 136 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--cCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHH
Confidence 33455688888888877743321 122 356788899999999999998877665431
Q ss_pred --------------hhhHHHHHHHHHHHHHhhhcCCCC-HHHHHHHHHHHH---HhhcCcchHHH------HHHHHHHHH
Q psy292 92 --------------RSQLKQAVVKMIQECVTYVDKTPS-KEIKVKLIETLR---TVTEGKIYVEV------ERARLTHIL 147 (452)
Q Consensus 92 --------------~~q~k~av~~~v~~~~~~~~~~~~-~~~~~~l~~~L~---~~~e~ki~lE~------er~~l~~~L 147 (452)
.|....|+ +..+.++.. .|+ ......+..... ...+..-+++. .....-..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 212 (327)
T 3cv0_A 137 DDLNVQSEDFFFAAPNEYRECR-TLLHAALEM---NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212 (327)
T ss_dssp ---------CCTTSHHHHHHHH-HHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhHHHHHcccHHHHH-HHHHHHHhh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 11121211 122222222 222 122222211110 00000001100 012345678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH----HH
Q psy292 148 AKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE----LK 223 (452)
Q Consensus 148 a~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~----lk 223 (452)
+.++...|++++|...++....- .. .-...+....+++...|++..|.....++........+. ..+ ..
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~ 285 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDI-NP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP-TGEASREAT 285 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC------CCTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-CC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccc-cccchhhcC
Confidence 99999999999999999886532 11 123467778899999999999999999887654221111 000 02
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
...+...+..+...+++-+|...|..++
T Consensus 286 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566888888999999888877553
No 128
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=89.89 E-value=5.1 Score=35.25 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHH----------------HHHHHhhccChHHHHHHHHHhh
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILE----------------QMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le----------------~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
...+..+...|++++|...++..... + ..-.+.++. ...++...|++..|...++++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL-----N-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----C-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----C-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45577888999999999999876532 1 112233444 7888999999999999999887
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 209 TKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 209 ~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
..- |++ ++. +...|..+...++|-+|-.+|..++...
T Consensus 82 ~~~---p~~--~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 82 QKA---PNN--VDC----LEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHC---TTC--HHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHC---CCC--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 663 433 333 3445888999999999999999998764
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.64 E-value=4.6 Score=38.87 Aligned_cols=105 Identities=9% Similarity=-0.029 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSME----------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~----------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
.+..-..++..+...|++++|...++....- ..... ...+...++....+++..+++..|...++++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677899999999999999999876532 22111 123467888889999999999999999999877
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 210 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 210 ~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.- +++ . +.. ...|..+...++|-+|..+|..++...
T Consensus 225 ~~---p~~--~--~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 225 LD---SNN--E--KGL--SRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HC---TTC--H--HHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hC---CCc--H--HHH--HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 63 332 2 333 345888999999999999999987654
No 130
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.30 E-value=5.1 Score=40.60 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=73.4
Q ss_pred HhcCCHHHHHHHHHHHHHHhccCcchH--HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHH
Q psy292 152 EDEGDVTEAANIIQELQVETYGSMEKK--EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRL 229 (452)
Q Consensus 152 e~~gd~~eA~~iL~~l~~Et~~~~~~~--~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~ 229 (452)
...|+|++|..+++....-..+.+++. .-+..+--.+.+|...|+|..|..+..|+.......-|.++++.=..|..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n- 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK- 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-
Confidence 356899999999988764323455554 56666667788899999999999999999765432222212666665544
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHc
Q psy292 230 MIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 230 ~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
.|..+...++|-+|-..|..++.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 68889999999999999988853
No 131
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=89.22 E-value=6.9 Score=42.36 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..|+.++.+.|++++|...++.... ... .-.+.+.....++...|++..|...++++...- ++. .+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~-l~P-----~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~--~~ 78 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALE-VFP-----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTF--AD 78 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HH
Confidence 3446789999999999999998887542 211 113566667788888999999999988887653 333 33
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
. +...|..+...++|-+|-.+|..++..
T Consensus 79 a----~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 79 A----YSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 344588888899999999999988764
No 132
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=89.01 E-value=5.5 Score=40.24 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc---c-------hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM---E-------KKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~---~-------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
.+.....++..+...|+|.+|...+.....- .... + ...+...++....+++..++|..|...++++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4455677899999999999999999876532 2211 1 224467888889999999999999999999877
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 210 KFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 210 ~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.- ++. .+..| ..|..+...++|-+|..+|..++...
T Consensus 346 ~~---p~~----~~a~~--~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 346 LD---SAN----EKGLY--RRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HS---TTC----HHHHH--HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cC---Ccc----HHHHH--HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 53 332 23333 34888999999999999999997653
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=88.69 E-value=3.8 Score=35.46 Aligned_cols=104 Identities=7% Similarity=-0.049 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCC-------
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE------- 215 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~------- 215 (452)
.-..++.++...|++++|...++....- .. .-...+.....++...+++..|.....++....-...
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 112 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINR-DK-----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHh
Confidence 4467799999999999999999876532 11 1246777888999999999999999999876542111
Q ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCC
Q psy292 216 ---KDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPC 255 (452)
Q Consensus 216 ---~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~ 255 (452)
.. .... ..+...|..+...++|-+|..+|..++....
T Consensus 113 ~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 113 GLQFK-LFAC--EVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TBCCE-EEHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccccC-ccch--HHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 00 0111 2234558888999999999999999987653
No 134
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=88.44 E-value=3.3 Score=37.17 Aligned_cols=100 Identities=8% Similarity=-0.201 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
....-..++.++...|++++|...++....- .. .-.+.+.....++...|++..|.....++.... ++.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~-- 110 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI-RP-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTY-- 110 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CC-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---ccc--
Confidence 4555667788888888888888888775531 11 123466677778888888888888888776653 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.. .+...|..+...++|-+|...|..++...
T Consensus 111 ~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 111 NY----AHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp TH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cH----HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11 13344777777888888888888887643
No 135
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.14 E-value=20 Score=34.69 Aligned_cols=181 Identities=9% Similarity=0.003 Sum_probs=112.7
Q ss_pred hhhhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHH-H
Q psy292 22 CDEKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAV-V 100 (452)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av-~ 100 (452)
++..+...+.-.++|++=+|...+..+-..-.........-.+|.+=+..+.+.|++.--.++...+..--.+-+..+ .
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 445677777778888888999988886543333445555667888888888888998888776544443111111111 2
Q ss_pred HHHHHHHhhhcCCCCH-HHHHHHHH-HH-HHhhcCc-chHHHHHHHHHHHHHHHHHhcCCHHHHHH-----------HHH
Q psy292 101 KMIQECVTYVDKTPSK-EIKVKLIE-TL-RTVTEGK-IYVEVERARLTHILAKMKEDEGDVTEAAN-----------IIQ 165 (452)
Q Consensus 101 ~~v~~~~~~~~~~~~~-~~~~~l~~-~L-~~~~e~k-i~lE~er~~l~~~La~i~e~~gd~~eA~~-----------iL~ 165 (452)
..+..+++.+...|.. ..+.+++. ++ |....|- -+= .-.+-..+|..|.++|++.+|.. .+.
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G---dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a 169 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG---DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYV 169 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHH
Confidence 2455555555555543 46788888 55 7765532 111 23466777888888999988765 345
Q ss_pred HHHHHhccC---cchHHHHHHHHHHHHHHhhccChHHHHHHHH
Q psy292 166 ELQVETYGS---MEKKEKVTLILEQMRLCLAKKDYIRTQIISK 205 (452)
Q Consensus 166 ~l~~Et~~~---~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~ 205 (452)
.+.+|.+.. -.+.+.--|+.+-+=-||..+|..-|.....
T Consensus 170 ~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 170 DLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555544 2334554455555555788888887765444
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.89 E-value=4.6 Score=37.68 Aligned_cols=96 Identities=7% Similarity=-0.130 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-..+|..+...|++++|...+.....- .. .-..++.....++...+++..|...+.++.... +++ +
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~--~-- 72 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR-NP-----LVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQS--V-- 72 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTC--H--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCC--H--
Confidence 3456799999999999999999876532 11 124677888899999999999999999887653 333 2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+. +...|..+...++|-+|...|..++..
T Consensus 73 ~~--~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 73 KA--HFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HH--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 334588889999999999999888654
No 137
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.29 E-value=5 Score=31.15 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=46.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc--CCcEEEeccCCChhHHHHHHHHHHHHHHHH
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR--PAGIINFARNKDPGEILNEWSASLNELMKL 432 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq--~~giV~f~~~~~~~~~l~~W~~~i~~ll~~ 432 (452)
...++...||+.+|+|..-+-..|..|...|-+...-|. ..+.+... ....+.+..+...+..+.+.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t--~~g~~~~~~~~~~~~~~~~~ 100 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA--EKPEKVLKEFKSSILGEIER 100 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE--CCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEec--CcHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999776554 33333332 23344555555444444433
No 138
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.81 E-value=3 Score=31.53 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcc---ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccC
Q psy292 354 EHNIRVMAKYYT---RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 403 (452)
Q Consensus 354 EhNi~~isk~Ys---~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~ 403 (452)
++.|+.+-+--. .+|...||+.||+|...|.+.|.+|..+|.|...-+.|
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 344544444455 89999999999999999999999999999998876666
No 139
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.75 E-value=25 Score=34.38 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhc--cC
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQV---ETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFF--DD 214 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~---Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~--~~ 214 (452)
++++--.||.++...|++++|.+.++.-.- +..+.-....-...+--...+|...|++..|..+..|+....- ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345556789999999999999999876421 1111111222334455667889999999999999988864321 11
Q ss_pred CCC-chHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHcCC
Q psy292 215 EKD-DVQELKLKYYRLMI--ELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 215 ~~~-~~~~lk~~~~~~~~--~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+.. +..+. +...| ......++|-+|-.+|..++...
T Consensus 130 ~~~~~~~~~----~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 130 PYRIESPEL----DCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp SSCCCCHHH----HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred ccchhhHHH----HHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 111 00221 22223 33445678889999999887653
No 140
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.69 E-value=3.5 Score=32.44 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHH
Q psy292 153 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 232 (452)
Q Consensus 153 ~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~ 232 (452)
..|++++|...++.... ...++..-...++....++...+++..|.....++.... +++ ++. +...|.
T Consensus 2 ~~g~~~~A~~~~~~al~---~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~--~~~----~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA---SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNH--QAL----RVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HHH----HHHHHH
T ss_pred CCCcHHHHHHHHHHHHH---cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc--hHH----HHHHHH
Confidence 35788888888877542 112245667788888889999999999999999887664 333 332 334588
Q ss_pred HHHHhhhHHHHHHHHHHHHcCC
Q psy292 233 LDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 233 ~~~~~~df~ea~~~y~e~~~t~ 254 (452)
.+...++|-+|-..|..++...
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888999999999988887653
No 141
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=85.89 E-value=3.5 Score=38.10 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=59.8
Q ss_pred CCchHHHHHHHHhcCCcccCchhHHHHHHHHhccCC-CCCccchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHH
Q psy292 297 NEIPLYKGLLQWFTNPELIKWSGLRQLYEEELFKTS-VFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDL 375 (452)
Q Consensus 297 ~~ip~~~~L~~~f~~~~Li~~~~~~~~~~~~L~~~~-~~~~~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~l 375 (452)
+.+...-.|.+...+++ |+. |...+...+ ++ .....|...+++.-...+++-|++|+++.++++
T Consensus 97 ~~I~~i~~L~~~L~~~~---y~~----fW~~l~~~~~l~--------~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~l 161 (226)
T 1rz4_A 97 RPIRQILYLGDLLETCH---FQA----FWQALDENMDLL--------EGITGFEDSVRKFICHVVGITYQHIDRWLLAEM 161 (226)
T ss_dssp TTHHHHHHHHHHHHTTC---HHH----HHHHSCTTCHHH--------HTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---HHH----HHHHHhcChhHH--------HHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 45556667778877773 433 333343322 11 011236667888777889999999999999999
Q ss_pred hC-CChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 376 LG-LPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 376 l~-ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
|| ++++++++.+.+- | =++| ++|.|.|.
T Consensus 162 Lg~~s~~el~~fi~~~---G---W~vd-~~g~I~~~ 190 (226)
T 1rz4_A 162 LGDLSDSQLKVWMSKY---G---WSAD-ESGQIFIC 190 (226)
T ss_dssp TTSCCHHHHHHHHHHH---T---CEEC-C--CEECC
T ss_pred HcCCCHHHHHHHHHHC---C---CEEC-CCccEEeC
Confidence 94 8999988887762 2 1355 66777664
No 142
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=85.67 E-value=9.7 Score=28.67 Aligned_cols=89 Identities=9% Similarity=-0.037 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
.-..++..+...|++++|...++....- .. .-...+.....+++..+++..|.....++...... .++ +..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~--~~~ 76 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA-QP-----QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEH--VAI 76 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTS--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccH--HHH
Confidence 4466799999999999999999886532 11 11456778888999999999999999998765422 222 333
Q ss_pred HHHHHHHHHHHHHHhhhH
Q psy292 223 KLKYYRLMIELDQHEGSY 240 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df 240 (452)
....+...+..+...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 233333345554444433
No 143
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.43 E-value=15 Score=34.20 Aligned_cols=97 Identities=8% Similarity=-0.058 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
....+|..+...|++++|...++.+... .. .-.+.++...++++..|++..|...++++...- ++ ...
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P-----~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~---~~~ 186 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQL-SN-----QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QD---TRY 186 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-TT-----SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CS---HHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh-CC-----cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cc---hHH
Confidence 4467799999999999999999987642 11 224677888899999999999999998875543 22 111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 223 KLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 223 k~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. ....+..+...+++-+|...|..+....
T Consensus 187 ~---~~~~~~~l~~~~~~~~a~~~l~~al~~~ 215 (287)
T 3qou_A 187 Q---GLVAQIELLXQAADTPEIQQLQQQVAEN 215 (287)
T ss_dssp H---HHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred H---HHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence 1 1222334455566667777777776543
No 144
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.38 E-value=8.2 Score=38.93 Aligned_cols=98 Identities=8% Similarity=0.083 Sum_probs=73.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHhc-cCcchH--HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhcc--CCCCchHHHHHH
Q psy292 151 KEDEGDVTEAANIIQELQVETY-GSMEKK--EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFD--DEKDDVQELKLK 225 (452)
Q Consensus 151 ~e~~gd~~eA~~iL~~l~~Et~-~~~~~~--~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~--~~~~~~~~lk~~ 225 (452)
+..+|+|++|..+++.... .+ +.+++. .-+..+--.+.+|...|+|.+|..+..|+...... .+.. ++.=..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~-~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H--p~~a~~ 373 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIIS-SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH--PVRGVQ 373 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHT-CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC--HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHH-hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC--hHHHHH
Confidence 4467999999999887653 32 444443 66677777788899999999999999999765432 2333 666555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
|.. .|..+...++|-+|-.+|..+++
T Consensus 374 l~n-La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMK-VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHH
Confidence 544 68888899999999999988853
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=84.82 E-value=7.9 Score=36.89 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.|-.+.+.+|..+...|++++|.+++..+.. + ....+ ..+-...+++..++|..|.....++... + +
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~---~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~-d- 166 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPV---A---GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----P-D- 166 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---T---TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----S-C-
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c---CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----C-C-
Confidence 3677888899999999999999999987652 1 12333 5555666999999999999888744221 1 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+.+...-+.+.|..+...++|-+|-.+|..+...+
T Consensus 167 -~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 167 -KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred -cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 33334344556999999999999999999998655
No 146
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=84.69 E-value=1.6 Score=33.40 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=35.5
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
|+.+.+-..+++++.||+.|++|+.-|...|..+...|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 33444558899999999999999999999999999999773
No 147
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=84.25 E-value=12 Score=28.62 Aligned_cols=104 Identities=8% Similarity=0.040 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
..++..++..++..|+++.....+...... .|+. .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~------------------------~ 38 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---------------------DPTN------------------------M 38 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------H
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---------------------CCcc------------------------H
Confidence 356778888888889888876665444421 1211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYG-SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~-~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
.+...++.++...|++++|...+.....-... .-+.......+.....++...+++..|.....++...
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23356788999999999999999876532111 1222344778888899999999999999999988765
No 148
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.20 E-value=13 Score=32.60 Aligned_cols=126 Identities=19% Similarity=0.145 Sum_probs=78.0
Q ss_pred hhhHHHHHHHhcCCcHHHHH---HHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhH-HHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAID---SLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQL-KQAV 99 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~---~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~-k~av 99 (452)
..++..+.+++.|-++.|+- .++.+....+.......-..++...+..+|..|+|..-..++..-.+.+.-+ |.+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47888999999987877665 4455655444333345566799999999999999999988776654322222 3221
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy292 100 VKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVE 170 (452)
Q Consensus 100 ~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~E 170 (452)
+ +..+.--+..|+. . ..+-| ..++.++|.-|.+.|++++|..+|+.|+..
T Consensus 102 ~---~~~~~~~ss~p~s---------~------~~~~e---~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 V---RPSTGNSASTPQS---------Q------CLPSE---IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------------CCCCH---HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c---cccccccCCCccc---------c------cccch---HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 1011100011110 0 01223 346777899999999999999999999864
No 149
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.20 E-value=1.7 Score=34.05 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=36.8
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
|+.+.+-..+++++.||+.|++|+.-|...|..+...|.+.-.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444455899999999999999999999999999999987543
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=83.80 E-value=33 Score=33.33 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
..+..++..+++.|+|+...+.+........... . . .+.+.. .-+......
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~---~-~~~~~~--------------~~~~~~~~~ 274 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------A---A-AEDADG--------------AKLQPVALS 274 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------H---H-SCHHHH--------------GGGHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------c---c-cChHHH--------------HHHHHHHHH
Confidence 3678889999999999998877765553211110 0 0 000000 012333556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
+-..+|..+...|++++|...++.... . + ......+.....++...+++..|...++++....
T Consensus 275 ~~~nla~~~~~~g~~~~A~~~~~~al~-~----~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 275 CVLNIGACKLKMSDWQGAVDSCLEALE-I----D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT-T----C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH-h----C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 677889999999999999999987652 1 1 1235667888889999999999999999987764
No 151
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=83.44 E-value=43 Score=39.23 Aligned_cols=50 Identities=12% Similarity=-0.000 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh
Q psy292 146 ILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 146 ~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
.+|..+++.|+|++|...++.. ..+...++.+...|++..|-..++|++.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 5899999999999999888763 4777788888888999999999888853
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.44 E-value=16 Score=29.27 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
.+.+.++..+++.|+|+.-.+.+...... -|+. ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------------------~p~~------------------------~~ 43 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------------------DPSN------------------------IT 43 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC------------------------HH
Confidence 46788999999999999987766543310 1221 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETY-GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~-~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+-..+|.+|...|++++|.+.++....-.. ...+.......+...-.++...+++..|.....++...
T Consensus 44 ~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334679999999999999998876542111 12233455667778888899999999999999887653
No 153
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=82.87 E-value=7.1 Score=29.96 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=48.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEe---ccCCcEEEeccCCChhHHHHHHHHHHHHHHHH
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKI---DRPAGIINFARNKDPGEILNEWSASLNELMKL 432 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akI---Dq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~ 432 (452)
...+++..||+.+|+|..-+-..|..|...|-+...- |+....+.... ...+.+..|...+..+.+.
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~--~g~~~~~~~~~~~~~~~~~ 97 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD--FGMEEAKRFLSSLKAVIDG 97 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH--HHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECH--HHHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999999999998766 43333333332 2234566666666655544
No 154
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=82.63 E-value=14 Score=39.24 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=104.5
Q ss_pred HhcCCcHHHHHHHHHHh-hhhcc-CCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy292 33 AAEGKFHDAIDSLLALE-KQTRT-GSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYV 110 (452)
Q Consensus 33 ~~~~~~~~a~~~l~~le-k~~r~-~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~ 110 (452)
...|++++|++.+.... ..-.. .........+...++..+...|+++...+.+....+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------- 462 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER------------------- 462 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------------------
Confidence 56778899998887743 00000 0011112346788888999999998886666544421
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q psy292 111 DKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRL 190 (452)
Q Consensus 111 ~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl 190 (452)
-|+ ....-..++.++...|++++|...++....-.-+ -.+.++....+
T Consensus 463 --~p~------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~ 510 (681)
T 2pzi_A 463 --VGW------------------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------ELAPKLALAAT 510 (681)
T ss_dssp --HCC------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHH
T ss_pred --Ccc------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHH
Confidence 122 1123346688899999999999999876532111 13556677777
Q ss_pred HhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 191 CLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 191 ~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+...|++.. ...++++...- +++ .+ . +...|..+...++|-+|-..|..+...
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~---P~~--~~--a--~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTN---DGV--IS--A--AFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHC---TTC--HH--H--HHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHcCChHH-HHHHHHHHHhC---Cch--HH--H--HHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 888899998 88888876553 333 33 2 334588889999999999999988654
No 155
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=82.36 E-value=2.6 Score=32.40 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcc---ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccC
Q psy292 354 EHNIRVMAKYYT---RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRP 403 (452)
Q Consensus 354 EhNi~~isk~Ys---~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~ 403 (452)
++.|+.+.+-.. ++|...||+.||+|...|.+.|.+|-.+|.|.-.--++
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 344455555566 89999999999999999999999999999986543333
No 156
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=81.94 E-value=18 Score=28.93 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
...+....+..+++.|+|+.-.+.+....+. -|+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---------------------~p~~------------------------ 46 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---------------------DPEN------------------------ 46 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC------------------------
Confidence 4457788899999999998887766544321 1211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..+-..++..+...|++++|...++.... .. ..-.+.++....++...|++..|....+++...
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~-----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIR-LD-----SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hh-----hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12334568888899999999988877542 11 122456777888899999999999988888765
No 157
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=81.91 E-value=15 Score=27.97 Aligned_cols=124 Identities=12% Similarity=0.046 Sum_probs=76.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVT 108 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~ 108 (452)
+......|++++|++.+....+... .+ ..+...++.+++..|+++.....+......
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDP--RS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCC--cc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 4445566777777777666655321 11 234556666677777766654444332210
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q psy292 109 YVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQM 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~ 188 (452)
.|+ . ......++.++...|++++|.+.+...... .. .....+....
T Consensus 65 ----~~~-----------------~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~la 110 (136)
T 2fo7_A 65 ----DPR-----------------S-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP-----RSAEAWYNLG 110 (136)
T ss_dssp ----CTT-----------------C-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHH
T ss_pred ----CCC-----------------c-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC-----CChHHHHHHH
Confidence 011 0 112345688899999999999999876532 11 1135667778
Q ss_pred HHHhhccChHHHHHHHHHhhh
Q psy292 189 RLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 189 rl~l~~~d~~~a~~~~~K~~~ 209 (452)
+++...+++..|.....++..
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHc
Confidence 889999999999888877654
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.42 E-value=20 Score=28.98 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
...++..++..++..|+++.-...+...... -|+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------------~p~~------------------------ 51 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---------------------DHYD------------------------ 51 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---------------------CCcc------------------------
Confidence 3456778888899999998886665544421 1211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchH
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQ 220 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~ 220 (452)
...-..|+.++...|++++|...++....- .. .-.+.++....++...|++..|...+.++.......+.. +
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~ 123 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALM--DI----NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH--E 123 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG--H
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CC----CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch--H
Confidence 112345788999999999999999876532 11 112456777888999999999999999887665333333 4
Q ss_pred HHHHHHHH
Q psy292 221 ELKLKYYR 228 (452)
Q Consensus 221 ~lk~~~~~ 228 (452)
.++-+...
T Consensus 124 ~~~~~~~~ 131 (142)
T 2xcb_A 124 ALAARAGA 131 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 159
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=80.98 E-value=11 Score=40.03 Aligned_cols=162 Identities=14% Similarity=0.048 Sum_probs=101.0
Q ss_pred HhcCCHHHHHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHH
Q psy292 152 EDEGDVTEAANIIQELQVETY---GSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYR 228 (452)
Q Consensus 152 e~~gd~~eA~~iL~~l~~Et~---~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~ 228 (452)
...|++++|.+.++...--.+ +..+ ..-.+.++...++++..+++..|...++++...- +++ ++. +.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~--~~a----~~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWR--WRL----VW 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCC--HHH----HH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cch--HHH----HH
Confidence 678999999999988651000 1111 1234678888999999999999999999887654 433 333 34
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhhhccCCchHHHHHHHH
Q psy292 229 LMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLYKGLLQW 308 (452)
Q Consensus 229 ~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~~~~~~ip~~~~L~~~ 308 (452)
..|..+...++|-+|-..|..++....- + .... +....+|.-+..+.. ...+-..+..+|.. ...+..+..+
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l~P~--~-~~~~--~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~a~~~lg~~ 543 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDTFPG--E-LAPK--LALAATAELAGNTDE-HKFYQTVWSTNDGV--ISAAFGLARA 543 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--C-SHHH--HHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-hHHH--HHHHHHHHHcCChHH-HHHHHHHHHhCCch--HHHHHHHHHH
Confidence 4588889999999999999999765432 1 2222 233444555555655 43332333334432 2356667777
Q ss_pred hcCCcccCchhHHHHHHHHhccCCC
Q psy292 309 FTNPELIKWSGLRQLYEEELFKTSV 333 (452)
Q Consensus 309 f~~~~Li~~~~~~~~~~~~L~~~~~ 333 (452)
+... -++.+....|++.+.-+|-
T Consensus 544 ~~~~--g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 544 RSAE--GDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHT--TCHHHHHHHHHTSCTTSTT
T ss_pred HHHc--CCHHHHHHHHHhhcccCcc
Confidence 6543 2466666677666654443
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=80.56 E-value=7.1 Score=37.57 Aligned_cols=105 Identities=13% Similarity=-0.039 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-----Ccc------hHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYG-----SME------KKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~-----~~~------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
.+.....++..+...|++.+|...+.....-.-. ... ...+...++....+++..++|..|....+++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455577899999999999999998875421100 000 01122477788889999999999999999887
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 209 TKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 209 ~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..- +++ .+..| ..+..+...++|-+|-.+|..++..
T Consensus 258 ~~~---p~~----~~a~~--~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEE---EKN----PKALF--RRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHC---TTC----HHHHH--HHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhC---CCC----HHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 653 332 23333 3588899999999999999998654
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=80.12 E-value=1.9 Score=36.58 Aligned_cols=123 Identities=9% Similarity=0.066 Sum_probs=77.7
Q ss_pred HHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhc
Q psy292 32 MAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVD 111 (452)
Q Consensus 32 ~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~ 111 (452)
+...|++++|++.+...-+.. +.+ ..+...++.+|+..|+++...+.+.......
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------- 74 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------- 74 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------
Confidence 445566777777776633221 122 2567889999999999988866655444210
Q ss_pred CCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q psy292 112 KTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKM-KEDEGDV--TEAANIIQELQVETYGSMEKKEKVTLILEQM 188 (452)
Q Consensus 112 ~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i-~e~~gd~--~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~ 188 (452)
|+. ......++.+ +...|++ ++|...++..... .. .-...++...
T Consensus 75 --p~~------------------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~la 122 (177)
T 2e2e_A 75 --GEN------------------------AELYAALATVLYYQASQHMTAQTRAMIDKALAL-DS-----NEITALMLLA 122 (177)
T ss_dssp --CSC------------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-CT-----TCHHHHHHHH
T ss_pred --CCC------------------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-CC-----CcHHHHHHHH
Confidence 110 1123455777 7788998 9999988876532 11 1135677778
Q ss_pred HHHhhccChHHHHHHHHHhhhhh
Q psy292 189 RLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 189 rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
+++...|++..|...+.++....
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcccHHHHHHHHHHHHhhC
Confidence 88999999999999998887654
No 162
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=79.93 E-value=24 Score=29.04 Aligned_cols=100 Identities=9% Similarity=-0.042 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
...++..++..++..|+++.-...+...... -|+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~~------------------------ 54 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---------------------DHYD------------------------ 54 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------------------Cccc------------------------
Confidence 3456788888999999998876665444321 1211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
...-..++.++...|++++|...+.....- .. .-.+.++....++...|++..|...+.++....
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-DI-----XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 112245788999999999999999876531 11 112466777888999999999999999987665
No 163
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.67 E-value=11 Score=28.61 Aligned_cols=64 Identities=11% Similarity=-0.110 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.....|+.++...|++++|...++....- ... -...++....++...+++..|...++++....
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET-DPD-----YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34567899999999999999999986532 111 22477888899999999999999999887654
No 164
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.56 E-value=53 Score=32.79 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHH
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIR 199 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~ 199 (452)
+.++...-+.++...++|.+|+..+-++. +|+...+.-...++.+.-+=+++...+...
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~-~t~~~~e~~~~~~~~~y~~l~al~~~~r~~ 265 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSL-ATFTSIELTSYESIATYASVTGLFTLERTD 265 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHh-ccCCccchhhHHHHHHHHHHHHHhcCCHHH
Confidence 44555556777888999999999998874 567666655666666555555555555443
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=79.54 E-value=43 Score=31.78 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHhhcCcchHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSK--EIKVKLIETLRTVTEGKIYVEV 138 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~--~~~~~l~~~L~~~~e~ki~lE~ 138 (452)
...++..++..++..|+|+.....+..... ..+..++. +...+ +..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~------------------~~p~~~~~~~~~~~~--------------~~~ 193 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS------------------WLEYESSFSNEEAQK--------------AQA 193 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HTTTCCCCCSHHHHH--------------HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------HhhccccCChHHHHH--------------HHH
Confidence 345788899999999999888766544432 22222111 11111 112
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
.+..+-..||.++...|++++|...++.... ... .-...++....++...+++..|...++++.... +++
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~- 263 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALE-LDS-----NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNN- 263 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCC-
Confidence 2455667889999999999999999988653 111 124577888899999999999999999987663 333
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHH
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCK-HYRAI 250 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~-~y~e~ 250 (452)
.+. +...+..+...+++.+|-+ .|..+
T Consensus 264 -~~a----~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 -KAA----KTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2233556666667766633 34444
No 166
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=79.36 E-value=12 Score=38.31 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..++.++...|++++|.+.++....- +. .-.+.+.....++...+++..|...++++.... +++ .+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~--~~ 92 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLAL-----HP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA---PEH--PG 92 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCC--HH
Confidence 34567899999999999999999886521 11 225677888889999999999999999987653 333 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. +...+..+...++|-+|-..|..++...
T Consensus 93 ~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 93 I----ALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp H----HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 3445888899999999999999997754
No 167
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.00 E-value=1.1e+02 Score=36.04 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=79.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHH------
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKM------ 102 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~------ 102 (452)
++..+.+|.+.+|++.|-.+.-.. +........+..++....+. +.....+++..+-+ ++...++.+
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~---s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDN---SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCC---CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhCCC
Confidence 445567888999999887755332 21111233344444444444 55666666666652 233333332
Q ss_pred HHHHHhhhcCCCCHH-HHHHHHHHHHHhhcCcchHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHH
Q psy292 103 IQECVTYVDKTPSKE-IKVKLIETLRTVTEGKIYVEV-ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEK 180 (452)
Q Consensus 103 v~~~~~~~~~~~~~~-~~~~l~~~L~~~~e~ki~lE~-er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k 180 (452)
..++...+.+..... -...+++.+.......-|.|. .--.+=..+|+.+++.|++++|.+.+..- .=
T Consensus 1065 yEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----------dD 1133 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------DD 1133 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----------CC
Confidence 344444443332211 122233322221111111110 01123347788888889999888877431 11
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHh
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKI 207 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~ 207 (452)
.+.+.+.+..+...|+|..|-.++..+
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234555666666667766665555443
No 168
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.76 E-value=14 Score=26.56 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 179 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 179 ~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
...+.+.....++...+++..|....+++.... +++ .. . +...+..+...++|-+|..+|..+...
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~--~~--~--~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNN--AE--A--WYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH--H--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC--HH--H--HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344555566666666677777766666665432 222 11 1 223466666677777777777766553
No 169
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=76.59 E-value=23 Score=27.10 Aligned_cols=63 Identities=8% Similarity=-0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
....++.++...|++++|...++....- .. .-.+.+.....++...|++..|...+.++....
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF-DP-----TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH-CC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999886531 11 124567777888999999999999999887654
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=76.58 E-value=25 Score=27.46 Aligned_cols=99 Identities=11% Similarity=-0.062 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
..++..++..++..|+|+.....+...... .|+. .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~~~~------------------------~ 43 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---------------------NPLV------------------------A 43 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------H
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---------------------CcCc------------------------H
Confidence 456788899999999998887666544421 1211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.+-..++.++...|++++|...++....- .. .-...++....++...+++..|.....++....
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALEL-DG-----QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cc-----hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 23456799999999999999999876531 11 124577788888999999999999888886543
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=76.57 E-value=31 Score=29.39 Aligned_cols=139 Identities=7% Similarity=-0.120 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
...+..++..++..|+|+...+.+..... ..+..++.... .+... ......
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~-----~~~~~------~~~~~~ 88 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALD------------------FFIHTEEWDDQ-----ILLDK------KKNIEI 88 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TTTTCTTCCCH-----HHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HHhcccccchh-----hHHHH------HHHHHH
Confidence 34678888999999999988766554442 11222211000 00000 011134
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
.+-..+|..+...|++++|...+.....- .. .-...++....++...+++..|.....++.... +++ .+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~--~~ 157 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DK-----NNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNN--LD 157 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTC--HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cc-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCc--HH
Confidence 55677899999999999999999876532 11 224577888899999999999999999887653 333 33
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q psy292 222 LKLKYYRLMIELDQHEGSYLATC 244 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~ 244 (452)
....+ +..+...+++.++-
T Consensus 158 ~~~~l----~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSY----ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHH----HHHHHHHHHHHC--
T ss_pred HHHHH----HHHHHHHHHHHHHH
Confidence 33322 44444455555544
No 172
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=76.52 E-value=15 Score=28.74 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=42.3
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHH
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNEL 429 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~l 429 (452)
++...||..+|+|+.-+...+..+...|-+.-. .+|+...+.....-+.+..|..-+..+
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~~~LT~kG~~~l~~l~~~~~~l~~l 80 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKKGEELLEDIRKFNEMRKNM 80 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCeeEEChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 345554444332223444444333333
No 173
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.65 E-value=38 Score=31.91 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhhHhHHhhhhh-hccCCchHHH---HHHHHhcCCcccCchhHHHHHHHHhccCCCCCc
Q psy292 261 IQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLED-KLLNEIPLYK---GLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQ 336 (452)
Q Consensus 261 ~~~~~~Lk~~vl~~ILa~~~~~~~~ll~~~~~~-~~~~~ip~~~---~L~~~f~~~~Li~~~~~~~~~~~~L~~~~~~~~ 336 (452)
+.....+.+-++|.+..+..++-+..|..+... +...+-|..+ .|.+++..++ |.. |-+.++..+...
T Consensus 100 ~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGn---Y~k----ff~l~~~~~~p~- 171 (274)
T 4b4t_T 100 DKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS---YQK----AWDLLQSGSQNI- 171 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTC---SHH----HHHHHHTCTTCC-
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCC---HHH----HHHHHhcCCCCc-
Confidence 445567778888887766666666556555432 2233334433 4666666664 322 222333333221
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHHHhCCC-hHHHHHHHHhhhhcCcEEEEeccCCcEEEeccC
Q psy292 337 STEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLP-IEETEEFLSSMVVSKTITAKIDRPAGIINFARN 412 (452)
Q Consensus 337 ~~~~g~~~~~~L~~~viEhNi~~isk~Ys~Itl~~La~ll~ls-~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~ 412 (452)
....--...|..+++..-+..+.+.|.+|+++.++++|+++ ++++...+.+ ... +++ +|-|.|...
T Consensus 172 --~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~----~gW--~~~--~~~v~F~~~ 238 (274)
T 4b4t_T 172 --SEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE----RNW--PIV--NSKVYFNNQ 238 (274)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH----TTC--CCC--SSCCCC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH----cCC--EEe--CCEeEECCc
Confidence 00001135677889998899999999999999999999995 5555555443 321 232 455667543
No 174
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=75.58 E-value=20 Score=26.45 Aligned_cols=61 Identities=10% Similarity=-0.070 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHH-HHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVT-LILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e-~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
..+|..+...|++++|...++..... ... -.. .++....++...+++..|.....++...-
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-EPV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-CSS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 35688899999999999999986532 111 123 67777888999999999999999887664
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=75.50 E-value=17 Score=28.23 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.......|+.++...|++++|...++....- ... -.+.+.....++...|++..|.....++....
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPN-----HQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556678899999999999999999986532 111 15677778888999999999999999987764
No 176
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=75.47 E-value=35 Score=28.55 Aligned_cols=24 Identities=4% Similarity=-0.116 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
..++..|...|++++|...++...
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455777777777777777776654
No 177
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.03 E-value=6.8 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=31.1
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
-.+|+..||+.||+|+.-|...|..+-..|.|.-
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4599999999999999999999999999998854
No 178
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=74.98 E-value=23 Score=26.29 Aligned_cols=94 Identities=14% Similarity=-0.000 Sum_probs=62.8
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
.....+......|++++|+..+....+.. +.+ ..+...++.+++..|+++...+.+......
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------ 67 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------------ 67 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHh------------
Confidence 34556677778888999998887744322 122 346778888888888888776554433321
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
.|+ .......++.++...|++++|...++...
T Consensus 68 ---------~~~------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 68 ---------KPD------------------------WGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp ---------CTT------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------Ccc------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 01233567889999999999999998754
No 179
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=74.85 E-value=27 Score=27.06 Aligned_cols=97 Identities=18% Similarity=0.077 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
..+...+..++..|+|+...+.+...... .|+. ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~~------------------------~~ 39 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---------------------APED------------------------AR 39 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------------CCCC------------------------hH
Confidence 46777888889999988886665444321 1221 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+-..++..+...|++++|...++....- .. .-...++....++...|++..|.....++...
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 40 GYSNRAAALAKLMSFPEAIADCNKAIEK-DP-----NFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC-----CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 4456788999999999999999876531 11 12456778888999999999999988888654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=74.83 E-value=29 Score=27.36 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=64.6
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMI 103 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v 103 (452)
..+..+..+.+.|++++|+..+...-+.. +.+ ..+...++.++...|+++.-...+......
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------ 80 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PER----EEAWRSLGLTQAENEKDGLAIIALNHARML------------ 80 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 45677888889999999999888743321 122 356778889999999988775554433321
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
-|+. ......|+.++...|++++|...++...
T Consensus 81 ---------~P~~------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 81 ---------DPKD------------------------IAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp ---------CTTC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCC------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1221 1133567889999999999999988754
No 181
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=74.77 E-value=9 Score=27.87 Aligned_cols=34 Identities=6% Similarity=0.192 Sum_probs=31.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
..++.+.||+.+|+|...|.+.|..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4699999999999999999999999999998754
No 182
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=74.59 E-value=25 Score=26.58 Aligned_cols=101 Identities=10% Similarity=-0.097 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHH
Q psy292 59 VSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEV 138 (452)
Q Consensus 59 ~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~ 138 (452)
.....++..++..++..|+++...+.+...... .|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~---------------------- 45 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL---------------------NPAN---------------------- 45 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC----------------------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---------------------CCCC----------------------
Confidence 344567888888999999988876655443321 1110
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
......++.++...|++++|...+.....- .. .-...++....++...+++..|.....++...
T Consensus 46 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 --AVYFCNRAAAYSKLGNYAGAVQDCERAICI-DP-----AYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhchHHHHHHHHHHHhc-Cc-----cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 123356788888999999999998876532 11 11456777888899999999999988888765
No 183
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.99 E-value=22 Score=28.87 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=38.5
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
.....++...||+.+|+|+.-+-..+.+|+..|-+.-.-|..++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCccc
Confidence 34678999999999999999999999999999999877765544
No 184
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=73.89 E-value=25 Score=28.55 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=32.1
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
+|...||+.+|+|..-|-+.|..|...|-+.-.-+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 99999999999999999999999999999865433
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=73.64 E-value=22 Score=25.41 Aligned_cols=64 Identities=16% Similarity=-0.017 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
......++..+...|++++|...++....- .. .-...+.....++...+++..|.....++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345567899999999999999999876532 11 11356777888999999999999999988765
No 186
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=73.22 E-value=29 Score=26.56 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy292 59 VSTGRILVAIVQICFEAKNWTALNEHITMLT 89 (452)
Q Consensus 59 ~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~ 89 (452)
.....++..++..++..|+|+...+.+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 43 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI 43 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445566666777777777666655544433
No 187
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.64 E-value=19 Score=29.22 Aligned_cols=43 Identities=2% Similarity=-0.086 Sum_probs=38.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
...++...||+.+|++..-+-..+.+|...|-+.-.-|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4579999999999999999999999999999998877766653
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=72.31 E-value=15 Score=27.19 Aligned_cols=64 Identities=6% Similarity=-0.074 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhc-cChHHHHHHHHHhhhhh
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAK-KDYIRTQIISKKINTKF 211 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~-~d~~~a~~~~~K~~~~~ 211 (452)
...+|.++...|++++|...++....- ... ....+.+.....++... +++..|.....++....
T Consensus 43 ~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 43 WLMKGKALYNLERYEEAVDCYNYVINV-IED---EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-SCC---TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc---cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 356799999999999999999876531 111 11356788889999999 99999999999887653
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=72.04 E-value=48 Score=28.56 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCc------c-hHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 138 VERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSM------E-KKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 138 ~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~------~-~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+.-+..-..++..+...|+|++|...+....- ..... + .......+.-....+...++|..|-...+++...
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444557778999999999999998886542 11221 1 1123447778888899999999999999998765
Q ss_pred h---cc-CCCCchHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 211 F---FD-DEKDDVQELKLK----YYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 211 ~---~~-~~~~~~~~lk~~----~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+ .+ .++ .-+.. |. .|.-+..-++|-+|-.+|..+++-
T Consensus 87 ~n~~~e~~pd----~~~A~~~~~~~--rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 87 FNRRGELNQD----EGKLWISAVYS--RALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHCCTTST----HHHHHHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccccCCCc----hHHHHHHHHHh--HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1 01 132 23443 43 488889999999999999998654
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=71.93 E-value=39 Score=27.59 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
....+...+..+++.|+|+...+.+...... +..... ...|+.+.... +....
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~-----------~~~~~~--~~~~~~~~~~~--------------~~~~~ 62 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTR-----------LDTLIL--REKPGEPEWVE--------------LDRKN 62 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHHH--TSCTTSHHHHH--------------HHHTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------HHHhcc--cCCCCHHHHHH--------------HHHHH
Confidence 4457899999999999999998776554431 111111 12233222111 11224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
..+-..+|..|...|++++|...+.....- . ..-...++....++...|++..|...+.++...-
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~-----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR-E-----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C-----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 456677899999999999999998876421 1 1224578888999999999999999999887663
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=71.73 E-value=11 Score=38.31 Aligned_cols=92 Identities=12% Similarity=-0.022 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHH
Q psy292 147 LAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKY 226 (452)
Q Consensus 147 La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~ 226 (452)
+|..+...|++++|.+.++....- .. .-...+.....++...+++..|....+++...- ++. . ..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~--~--~~-- 76 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-NP-----SNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKY--I--KG-- 76 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTC--H--HH--
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCC--H--HH--
Confidence 344455566666666666554321 10 113445555556666666666666666555431 221 1 11
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 227 YRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 227 ~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+...|..+...++|-+|-..|..++..
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222355555666666666666666543
No 192
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.65 E-value=20 Score=28.94 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=37.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+.+|...|-+.-..|..++
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccC
Confidence 457899999999999999999999999999999888776666
No 193
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.07 E-value=20 Score=29.01 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=37.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+.+|+..|-+.-.-|..++
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 357999999999999999999999999999999887776555
No 194
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=70.94 E-value=21 Score=29.55 Aligned_cols=42 Identities=2% Similarity=0.041 Sum_probs=37.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 568999999999999999999999999999999877765544
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=70.89 E-value=33 Score=34.28 Aligned_cols=137 Identities=7% Similarity=-0.070 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCC--HHHHHHHHHHHHHhhcCcchHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPS--KEIKVKLIETLRTVTEGKIYVEVE 139 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~--~~~~~~l~~~L~~~~e~ki~lE~e 139 (452)
..++...+..+++.|+|+.....+..... ..+..++ .+...+ +...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~------------------~~p~~~~~~~~~~~~--------------~~~~ 315 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS------------------WLEMEYGLSEKESKA--------------SESF 315 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHTTCCSCCHHHHHH--------------HHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH------------------HhcccccCChHHHHH--------------HHHH
Confidence 44788889999999999888766544432 1121111 111110 1223
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCch
Q psy292 140 RARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDV 219 (452)
Q Consensus 140 r~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~ 219 (452)
+..+-..+|..|...|++++|...++....- .. .-...++...++++..+++..|...++++...- +++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~-- 384 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGL-DS-----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQN-- 384 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CC-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCC--
Confidence 5566678899999999999999999886531 11 124667888999999999999999999987653 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCK 245 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~ 245 (452)
.+. +...+..+...+++.+|-+
T Consensus 385 ~~a----~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 385 KAA----RLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -CH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHH
Confidence 111 2223555555666666543
No 196
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=70.63 E-value=26 Score=28.45 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=37.3
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++.+.||+.+|+|..-+-..+.+|...|-+.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 457999999999999999999999999999999887765544
No 197
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=70.59 E-value=25 Score=28.50 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=35.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++.+.||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999877766655
No 198
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=70.43 E-value=23 Score=28.86 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=37.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+|..-+-..+..|...|-+.-.-|..++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 778999999999999999999999999999999877665544
No 199
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=70.08 E-value=20 Score=28.96 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=38.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 4779999999999999999999999999999998877776663
No 200
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.04 E-value=95 Score=30.82 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccCcchHHHHH
Q psy292 140 RARLTHILAKMKE-DEGDVTEAANIIQELQVETYGSMEKKEKVT 182 (452)
Q Consensus 140 r~~l~~~La~i~e-~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e 182 (452)
.+.+...-+.++. .+|+|.+|+..+-+. .++|...+......
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea-f~~f~~~~~~~~~~ 221 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA-FEGFDSVDSVKALT 221 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHTTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH-HhcccccccHHHHH
Confidence 4556666688899 899999999998875 46676665544433
No 201
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=68.90 E-value=16 Score=29.64 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=46.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc---EEEeccCCChhHHHHHHHHHHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG---IINFARNKDPGEILNEWSASLNELMKLV 433 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g---iV~f~~~~~~~~~l~~W~~~i~~ll~~v 433 (452)
..++...||+.+|++..-+=..+.+|...|-+.-.-|..++ .|.... ...+.+......+..++..+
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~--~G~~~~~~~~~~~~~~~~~~ 121 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNA--QQRKKIESLLSRVNKRITEA 121 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCS--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECH--HHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999998776666555 344332 22334444444444444433
No 202
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=68.66 E-value=14 Score=37.56 Aligned_cols=185 Identities=18% Similarity=0.216 Sum_probs=73.0
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHH-HHHH-H-----
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLK-QAVV-K----- 101 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k-~av~-~----- 101 (452)
++...+.|++++|++.+.. +.| . .....++..|...|+|+.+..++..-++. ++ ++|- .
T Consensus 39 a~A~l~~g~~~eAIdsfik-------a~D-~---~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 39 AKAQLQKGMVKEAIDSYIK-------ADD-P---SSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHc-------CCC-H---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHH
Confidence 3445567889999998853 122 2 24566666777899999998876655542 22 1111 1
Q ss_pred ----HHHHHHhhhcCCCCHHHHHHHHHHH---HHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q psy292 102 ----MIQECVTYVDKTPSKEIKVKLIETL---RTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGS 174 (452)
Q Consensus 102 ----~v~~~~~~~~~~~~~~~~~~l~~~L---~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~ 174 (452)
-...+.+++.. |+......+-..+ ....+.+.++. .+.--.+||..+...|++.+|.+......
T Consensus 105 ~Klg~l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~--~a~n~~~LA~~L~~Lg~yq~AVea~~KA~------ 175 (449)
T 1b89_A 105 AKTNRLAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYN--NVSNFGRLASTLVHLGEYQAAVDGARKAN------ 175 (449)
T ss_dssp ----CHHHHTTTTTC-C----------------CTTTHHHHHH--HTTCHHHHHHHHHTTTCHHHHHHHHHHHT------
T ss_pred HHhCCHHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHH--HhhhHHHHHHHHHHhccHHHHHHHHHHcC------
Confidence 13444555533 4443333332222 22334444443 33344678999999999999988777541
Q ss_pred cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 175 MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 175 ~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
....+-...-.|...|+|..|...... +...+ .++ .-.+.++...+.|.+|.++|..++...
T Consensus 176 -----~~~~Wk~v~~aCv~~~ef~lA~~~~l~----L~~~a----d~l-----~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 176 -----STRTWKEVCFACVDGKEFRLAQMCGLH----IVVHA----DEL-----EELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHTTTT----TTTCH----HHH-----HHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred -----CchhHHHHHHHHHHcCcHHHHHHHHHH----HHhCH----hhH-----HHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 245667777889999999999554332 22222 121 225677888999999999999997544
No 203
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=68.46 E-value=21 Score=29.21 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=37.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc---EEEec
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG---IINFA 410 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g---iV~f~ 410 (452)
...++...||+.+|+++.-+-..+..|+..|-|.-.-|..++ .|...
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 98 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLT 98 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEEC
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeEC
Confidence 378999999999999999999999999999999877755444 45444
No 204
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=68.30 E-value=22 Score=29.77 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=36.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+++.-+-..+.+|+..|-+.-.-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 477999999999999999999999999999999887766555
No 205
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.25 E-value=21 Score=28.45 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=37.4
Q ss_pred cceeHHHHHHHh-CCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..+++..||+.+ |++..-+-..|..|...|-|...-|..++
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 578999999999 99999999999999999999988876655
No 206
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=67.97 E-value=66 Score=28.62 Aligned_cols=187 Identities=11% Similarity=-0.021 Sum_probs=120.3
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhhhhHHHHHHH
Q psy292 26 IPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFE----AKNWTALNEHITMLTKRRSQLKQAVVK 101 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~----~~~~~~l~~~~~~l~~~~~q~k~av~~ 101 (452)
...+......|++++|++-+....+ ..+ ..++..++.++.. .++++.-.+.+...... +.. .+
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~-~a--- 76 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD----LKE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYS-NG--- 76 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH-HH---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCH-HH---
Confidence 4445566677889999998877433 122 2467889999999 99999998887776643 211 11
Q ss_pred HHHHHHhhhc---CCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccC
Q psy292 102 MIQECVTYVD---KTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKED----EGDVTEAANIIQELQVETYGS 174 (452)
Q Consensus 102 ~v~~~~~~~~---~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~----~gd~~eA~~iL~~l~~Et~~~ 174 (452)
+.....-+.. ...+.+.-+..++..- ..+ .......|+.+|.. .|++++|...++.... .+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~--~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--~~- 144 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKAC--DLK-------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LN- 144 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TT-
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHH--HcC-------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh--cC-
Confidence 1111111221 1334344444444211 112 23355778999999 9999999999987653 12
Q ss_pred cchHHHHHHHHHHHHHHhh----ccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHH----hhhHHHHHHH
Q psy292 175 MEKKEKVTLILEQMRLCLA----KKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQH----EGSYLATCKH 246 (452)
Q Consensus 175 ~~~~~k~e~~Le~~rl~l~----~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~----~~df~ea~~~ 246 (452)
-.+.+.....++.. .+|+.+|....+++... ++ ++. +...+..+.. .++|.+|..+
T Consensus 145 -----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~--~~a----~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 145 -----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KD--SPG----CFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC--HHH----HHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred -----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC--HHH----HHHHHHHHHcCCCCCccHHHHHHH
Confidence 12445566677777 89999999999988754 22 222 2234777778 8999999999
Q ss_pred HHHHHcC
Q psy292 247 YRAILTT 253 (452)
Q Consensus 247 y~e~~~t 253 (452)
|..+.+.
T Consensus 209 ~~~a~~~ 215 (273)
T 1ouv_A 209 YSKACEL 215 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9988764
No 207
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=67.91 E-value=83 Score=29.69 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=91.2
Q ss_pred hhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy292 25 KIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQ 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~ 104 (452)
.+.-|..+.+.|++++|.+.|..+.... +.+ . +.....-+|++.++|+....++....
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~---~--~~~~~a~l~~~~~r~~dA~~~l~~a~--------------- 162 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEH---L--VAWMKAVVYGAAERWTDVIDQVKSAG--------------- 162 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHH---H--HHHHHHHHHHHTTCHHHHHHHHTTGG---------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cch---H--HHHHHHHHHHHcCCHHHHHHHHHHhh---------------
Confidence 4566778888999999999987754311 111 1 55666679999999999977664111
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHH
Q psy292 105 ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLI 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~ 184 (452)
..++.. ........|+..++..|++++|...++... .+..+...-.+.+
T Consensus 163 -------~~~d~~---------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~---~g~~~P~~~~da~ 211 (282)
T 4f3v_A 163 -------KWPDKF---------------------LAGAAGVAHGVAAANLALFTEAERRLTEAN---DSPAGEACARAIA 211 (282)
T ss_dssp -------GCSCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSTTTTTTHHHHH
T ss_pred -------ccCCcc---------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHh---cCCCCccccHHHH
Confidence 112211 123355677889999999999999998764 1332233366777
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+.+.-+....|+...|....+++...
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888889999888888877654
No 208
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=67.91 E-value=26 Score=28.70 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=36.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 457999999999999999999999999999999877765555
No 209
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=67.91 E-value=23 Score=29.19 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=37.4
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
....++...||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 51 ~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 51 LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 3568999999999999999999999999999999877665444
No 210
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.85 E-value=20 Score=28.89 Aligned_cols=42 Identities=5% Similarity=0.153 Sum_probs=37.3
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+|+.-+-..+..|...|-+.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 567999999999999999999999999999999877665554
No 211
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=67.49 E-value=15 Score=27.32 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=31.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
..++...||+.+|+|..-+-+.|..|...|.+..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999999874
No 212
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=67.36 E-value=39 Score=25.76 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=34.8
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCC
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA 404 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~ 404 (452)
-..++...||+.+|+|..-+-+.|..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 56799999999999999999999999999999977655433
No 213
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=67.23 E-value=46 Score=26.88 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=38.3
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
...++...||+.+|+|+.-+-..+..|...|-+.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4679999999999999999999999999999998887766653
No 214
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=66.82 E-value=25 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=38.3
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+++.-+=..+.+|+..|-|.-.-|..++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 468999999999999999999999999999999888776665
No 215
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=66.82 E-value=79 Score=29.07 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
..++.++...|++++|..+++..... ..+++....+++..-+++....|++..|..+.+++....
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~--~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTS--GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHS--SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 55566677777777777777654321 123333344556666666666677777777766666554
No 216
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=66.33 E-value=22 Score=29.02 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=37.6
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..+|...||+.+|+|..-+=..+..|...|-+.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 67999999999999999999999999999999888777665
No 217
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=65.38 E-value=98 Score=29.62 Aligned_cols=167 Identities=13% Similarity=0.180 Sum_probs=86.6
Q ss_pred HHHHHhcCCcHHHHHHHHHH-hhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhh---hH-HHHHHHHH
Q psy292 29 AIKMAAEGKFHDAIDSLLAL-EKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRS---QL-KQAVVKMI 103 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~l-ek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~---q~-k~av~~~v 103 (452)
+......|++++|+..+... +... ..-...+...+++++.+.|+.+.....+..+..... .- -..++.+.
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~-----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDE-----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCC-----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 33444567788888877663 4311 022456777788888888888888777776654321 00 01122222
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---c--chH
Q psy292 104 QECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGS---M--EKK 178 (452)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~---~--~~~ 178 (452)
..-+.......+...-..+++-+....+. +......+. .++..|++++|-+.|+.+... +.. . .+.
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~-------~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~-~p~~~~k~~~~p 252 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTFPT-------WKTQLGLLN-LHLQQRNIAEAQGIVELLLSD-YYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTSCS-------HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSH-HHHTTTCHHHHS
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhCCC-------cccHHHHHH-HHHHcCCHHHHHHHHHHHHHh-cccccccccCCC
Confidence 22222222211122223344433222211 111122223 788889999999998854422 111 1 012
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 179 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 179 ~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
...+++.-.+-++...|+ .|..+++++...-
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 356666666667777776 5666666665543
No 218
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=65.37 E-value=33 Score=28.51 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=36.5
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
-..++.+.||+.++++..-+=..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 456999999999999999999999999999999988887776
No 219
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.20 E-value=1.2e+02 Score=30.44 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGS-MEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINT 209 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~-~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~ 209 (452)
+...+-...++++...|||..|-.++..+..-.+.. -+...|+.|+....+++...+||..|...+.-+..
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455566667889999999999999999876433332 34568999999999999999999998877666654
No 220
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=64.89 E-value=31 Score=28.11 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=34.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 568999999999999999999999999999999877665444
No 221
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.67 E-value=34 Score=28.98 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=37.8
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+..|+..|-|.-.-|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999887776555
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=64.30 E-value=23 Score=27.33 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccC--CCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDD--EKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~--~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
+-++++.+.++..+||.+|...+.+|....-.+ .|. -+...+...+.-+...++|..|..+|.+++.-
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~----~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI----DKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcc----cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345677888889999999998888887654222 121 13344566688888899999999999998743
No 223
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=63.73 E-value=34 Score=28.35 Aligned_cols=42 Identities=7% Similarity=0.197 Sum_probs=36.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+.+|+..|-+.-.-|..++
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 347999999999999999999999999999999877765544
No 224
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=62.73 E-value=30 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=36.9
Q ss_pred HhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 361 AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 361 sk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
.+.-.++++..||+.+|+|+.-+-+.+.+|...|.|. +.+|+.
T Consensus 26 L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 26 LKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 3345689999999999999999999999999999884 567765
No 225
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=62.54 E-value=39 Score=28.10 Aligned_cols=42 Identities=5% Similarity=0.049 Sum_probs=35.8
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..|.+|...|-+.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 467999999999999999999999999999999876654444
No 226
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=62.37 E-value=22 Score=29.17 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=36.8
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 456999999999999999999999999999999876665554
No 227
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=62.32 E-value=53 Score=26.19 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=47.6
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHH-HHHHHHhhHhHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMK-LVNNTTHLINKE 443 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~-~v~k~~~lI~ke 443 (452)
..++...||+.+|+|..-+-..|..|...|-+...-+. +.+.+.-....-..+..|......+.. .++.+..++..+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g--r~~~y~l~~~~~~~l~~~~~~~~~~~~~~l~~l~~~l~~~ 107 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG--RVRTCAIEKEPFTAVEAWLAEQQELWESRTDRLEQFVTEH 107 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET--TEEEEEECSHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC--CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999876662 333343333333455666666554442 333444444433
No 228
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=62.22 E-value=15 Score=29.97 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=34.0
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV 407 (452)
..++.+.||+.+|+|+..+.+.+..|...|-+...=....|+.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 5689999999999999999999999999998865422233443
No 229
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=62.18 E-value=63 Score=26.33 Aligned_cols=102 Identities=12% Similarity=-0.045 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHH
Q psy292 59 VSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEV 138 (452)
Q Consensus 59 ~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~ 138 (452)
.....++..++..++..|+|+...+.+...... -|+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~----------------------- 43 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI---------------------APA----------------------- 43 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------STT-----------------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCc-----------------------
Confidence 345568889999999999999887766554421 121
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
...+-..++.+|...|++++|...++.... ... .-...++....++...+++..|...++++....
T Consensus 44 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 44 -NPIYLSNRAAAYSASGQHEKAAEDAELATV-VDP-----KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 122345678999999999999999987653 111 125677888899999999999999999998765
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=62.09 E-value=51 Score=25.26 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYG--SMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~--~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
-...|+..+...|+|..|..-++.... ... ......+.+++......+...|++..|..+.+++...-
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~-~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALR-QLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHH-hhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 456789999999999999999987642 221 11123566777778888999999999999999887653
No 231
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=62.00 E-value=14 Score=30.23 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=30.0
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++.+.||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 457999999999999999999999999999999887776655
No 232
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=61.76 E-value=51 Score=25.11 Aligned_cols=67 Identities=3% Similarity=0.014 Sum_probs=47.3
Q ss_pred ccceeHHHH----HHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHH
Q psy292 364 YTRITLQRM----CDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKL 432 (452)
Q Consensus 364 Ys~Itl~~L----a~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~ 432 (452)
...++...| |+.+|++..-+-..+..|...|-+.-.-|.....+..... ..+.+..|...+......
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~--G~~~~~~~~~~~~~~~~~ 90 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEK--GKLFAISLKTAIETYKQI 90 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH--HHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHH--HHHHHHHHHHHHHHHHHH
Confidence 467899999 9999999999999999999999998877774334444322 234455555444444443
No 233
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=61.73 E-value=36 Score=27.65 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=33.6
Q ss_pred HhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 361 AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 361 sk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..... ++...||+.+|+|..-+-..+..|...|-+.-.-|..++
T Consensus 47 l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 47 LSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp HTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 33455 999999999999999999999999999999887765555
No 234
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.72 E-value=55 Score=25.48 Aligned_cols=103 Identities=10% Similarity=-0.037 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHH
Q psy292 61 TGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVER 140 (452)
Q Consensus 61 ~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er 140 (452)
....+..++..++..|+|+...+.+...... .|+.. ..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------------------~~~~~---------------------~~ 64 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---------------------DATPQ---------------------DQ 64 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---------------------CCCHH---------------------HH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---------------------cccch---------------------HH
Confidence 3456788888899999988876665544421 23211 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
..+...++.++...|++++|...++....- .. .-...++....++...+++..|.....++....
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEK-DG-----GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TS-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhh-Cc-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445567788899999999999988875432 11 115667778888999999999999888887653
No 235
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=61.61 E-value=35 Score=26.67 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=33.7
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
..++...||+.+|+|..-+-..|..|...|.+...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999977655
No 236
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=61.09 E-value=36 Score=27.43 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=36.1
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
.++...||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 7999999999999999999999999999999877765554
No 237
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.79 E-value=51 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=34.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
-..++...||+.+|+|..-+-..|..|...|-+...-|.
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 346999999999999999999999999999999766553
No 238
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=60.74 E-value=40 Score=25.36 Aligned_cols=63 Identities=8% Similarity=-0.053 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..++....+++..+++..|.....++...- ++. +. .+...|..+...++|-+|...|..++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~--~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD---PDY--VG----TYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC--TH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466777888999999999999999987664 322 22 2445688999999999999999988654
No 239
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.27 E-value=18 Score=30.42 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=36.9
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
+-..++++..||+.+|+|+.-+-+.+.+|...|.+. +.+|..
T Consensus 18 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 18 MGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 345789999999999999999999999999999875 467865
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.14 E-value=42 Score=29.26 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCC--CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEK--DDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~--~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
-.++++++-.+..+-|.-|....+.+....-.+++ . ++.+..-..+.|.-+-++++|..|...|..++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s--p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS--PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 46789999999999999999999887654322222 3 677777778889999999999999999999854
No 241
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=60.11 E-value=45 Score=27.07 Aligned_cols=41 Identities=5% Similarity=0.002 Sum_probs=37.0
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
... +.+.||+.+|+++.-+=..+..|...|-+.-.-|..++
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 89 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDR 89 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 444 99999999999999999999999999999888877766
No 242
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=59.96 E-value=18 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=37.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999877765444
No 243
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=59.41 E-value=18 Score=34.61 Aligned_cols=64 Identities=8% Similarity=-0.132 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.+-..+|..|...|++++|...++....- .. .-...++...++++..+++..|...++++...-
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p-----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE-EE-----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35577899999999999999999876531 11 224567888899999999999999999986553
No 244
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=59.15 E-value=73 Score=29.13 Aligned_cols=97 Identities=10% Similarity=-0.063 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHH
Q psy292 63 RILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERAR 142 (452)
Q Consensus 63 ~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~ 142 (452)
.++..++..++..|+|+...+.+...... -|+ ...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~------------------------~~~ 39 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR---------------------NPL------------------------VAV 39 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CSC------------------------CHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCc------------------------cHH
Confidence 45777888888999988887666544421 121 012
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
+-..+|.++...|++++|...+..... . ++ .-...+.....++...|++..|...+.++...
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~al~----~-~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 40 YYTNRALCYLKMQQPEQALADCRRALE----L-DG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT----S-CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----h-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334567777788888888877776431 1 11 11345556667777788888887777776543
No 245
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=59.14 E-value=18 Score=30.13 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=37.4
Q ss_pred HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
..+...++++..||+.+|+|+.-+-+.+.+|...|.|. +.+|+.
T Consensus 13 ~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 13 ELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 33445789999999999999999999999999999885 457765
No 246
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=58.59 E-value=62 Score=26.51 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=34.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 567999999999999999999999999999999877665444
No 247
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=58.30 E-value=45 Score=24.39 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=47.2
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 185 LEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 185 Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
+.....++..+++..|....+++.... +++ .. ..+...|..+...++|-+|..+|..++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~--~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE---PVG--KD---EAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---SST--HH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc--HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456778889999999999999887653 333 22 124456888899999999999999987654
No 248
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=58.20 E-value=49 Score=28.71 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=38.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++.+.||+.+|++..-+=..|..|+..|-|.-.-|..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 568999999999999999999999999999999988877766
No 249
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.19 E-value=18 Score=30.40 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=36.2
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
+...+++...||+.+|+|+.-+-+.+.+|...|.+. +.+|..
T Consensus 19 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 19 SENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 345789999999999999999999999999999874 456754
No 250
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=58.05 E-value=38 Score=28.70 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=36.0
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc---EEEec
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG---IINFA 410 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g---iV~f~ 410 (452)
...++...||+.++++..-+=..|.+|+..|-|.-.-|..++ .|...
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 456999999999999999999999999999999877655444 45444
No 251
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=57.15 E-value=38 Score=28.33 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=37.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc---EEEec
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG---IINFA 410 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g---iV~f~ 410 (452)
...++...||+.+|++..-+=..+.+|...|-|.-.-|..++ .|...
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 458999999999999999999999999999999877665544 45444
No 252
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=56.46 E-value=56 Score=25.58 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=38.3
Q ss_pred ccceeHHHHHHHh-CCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...+++..|++.+ |+|+.-+=..|..|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 99999999999999999999988887655
No 253
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=56.41 E-value=20 Score=30.49 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
..+-..++++..||+.+|+|+.-+-+.+.+|...|.|. +.+|..
T Consensus 18 ~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 18 VLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 33345679999999999999999999999999999875 466754
No 254
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=55.70 E-value=15 Score=30.86 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcE
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~gi 406 (452)
+..+++.+.. +.+.||+.+++|+..+++.+..|...|-+...=- ..|+
T Consensus 15 L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy 62 (145)
T 1xd7_A 15 LSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGA 62 (145)
T ss_dssp HHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSC
T ss_pred HHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCc
Confidence 3445554556 9999999999999999999999999999877544 3444
No 255
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=55.64 E-value=46 Score=25.37 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=33.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
..+++..||+.+|+|..-+-+.|..|...|-+...-+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999999999999999987633
No 256
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=55.56 E-value=30 Score=28.63 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.5
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
....++...||+.+|++..-+-..+..|+..|-+.-.-|..++
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 3567999999999999999999999999999999766554443
No 257
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=55.49 E-value=24 Score=29.62 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=39.1
Q ss_pred HHHHHhhc--cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEE
Q psy292 357 IRVMAKYY--TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407 (452)
Q Consensus 357 i~~isk~Y--s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV 407 (452)
+..++... ..++.+.||+.+|+|+..+++.+..+...|-+..+=-...|+.
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 33444433 3699999999999999999999999999998877533334443
No 258
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=53.90 E-value=28 Score=28.69 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=35.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE--EeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a--kIDq~~g 405 (452)
...++...||+.+|+++.-+-..+.+|+..|-+.- .-|..++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~ 96 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDS 96 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCC
Confidence 46799999999999999999999999999999987 5555554
No 259
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=53.64 E-value=27 Score=28.56 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=33.4
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
....++...||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 51 ~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 3568999999999999999999999999999998776655444
No 260
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=53.39 E-value=66 Score=23.80 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHH
Q psy292 62 GRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERA 141 (452)
Q Consensus 62 ~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~ 141 (452)
..++..++..++..|+++...+.+....+. .|+. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~------------------------~ 43 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------------------DPNN------------------------A 43 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------CTTC------------------------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------CcCc------------------------H
Confidence 456778888888888888776655443321 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
.....++.++...|++++|...++....- .. .....+.....++...+++..|.....++...
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 13346688899999999999999876531 11 11356677788899999999999998888655
No 261
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=53.11 E-value=33 Score=27.83 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=37.1
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+|..-+-..+..|...|-+.-.-|..++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 457999999999999999999999999999999877765444
No 262
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=52.83 E-value=31 Score=28.69 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=33.1
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+.+|+..|-|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 568999999999999999999999999999999766654444
No 263
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=52.68 E-value=1.2e+02 Score=26.74 Aligned_cols=178 Identities=7% Similarity=-0.058 Sum_probs=113.6
Q ss_pred cCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy292 35 EGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFE----AKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYV 110 (452)
Q Consensus 35 ~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~----~~~~~~l~~~~~~l~~~~~q~k~av~~~v~~~~~~~ 110 (452)
.+++++|++-+...-+. . ...++..+..+|.. .++++...+.+...... +.. .+ +.+...-+.
T Consensus 55 ~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~-~a---~~~lg~~~~ 121 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL----N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYA-EG---CASLGGIYH 121 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH-HH---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCc-cH---HHHHHHHHH
Confidence 67788888877663321 1 23577889999999 99999998887766643 211 11 111111121
Q ss_pred c---CCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccCcchHHHHHH
Q psy292 111 D---KTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKED----EGDVTEAANIIQELQVETYGSMEKKEKVTL 183 (452)
Q Consensus 111 ~---~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~----~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~ 183 (452)
. ...+.+.-+..++... ..+ .......|+.++.. .|++++|...++...-- + -.+.
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~--~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~------~~~a 184 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKAC--DLN-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--K------DSPG 184 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHH--HTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHH
T ss_pred cCCCcccCHHHHHHHHHHHH--hcC-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C------CHHH
Confidence 1 1334444444444211 112 12345678999998 99999999999875421 1 1355
Q ss_pred HHHHHHHHhh----ccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcC
Q psy292 184 ILEQMRLCLA----KKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQH----EGSYLATCKHYRAILTT 253 (452)
Q Consensus 184 ~Le~~rl~l~----~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~----~~df~ea~~~y~e~~~t 253 (452)
+.....++.. .+|+.+|....+++...- + ++. +...+..+.. .+++.+|..+|..+.+.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~--~~a----~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELE-----N--GGG----CFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----C--HHH----HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----C--HHH----HHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6677788888 899999999999887541 1 222 1234777777 88999999999888654
No 264
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=52.31 E-value=27 Score=29.16 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=36.3
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
+...++++..||+.+|+|+.-+-+.+.+|...|.+. +.+|+.
T Consensus 17 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 17 AADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 335789999999999999999999999999999874 567765
No 265
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=52.15 E-value=21 Score=29.97 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=35.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE--EeccCCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAGI 406 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a--kIDq~~gi 406 (452)
..-.|.+.||+.+|+++.++.+.|.+++..|-|.= +.|..+++
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 45579999999999999999999999999998864 55665443
No 266
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=51.14 E-value=42 Score=27.29 Aligned_cols=42 Identities=5% Similarity=0.101 Sum_probs=34.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++.+.||+.+++++.-+=..+.+|+..|-+.-.-|..++
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 578999999999999999999999999999999887766555
No 267
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=50.96 E-value=44 Score=28.71 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=38.1
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
..++.+.||+.+|+|+..+++.+..+...|-+..+=-...|+.--.
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecC
Confidence 3599999999999999999999999999999987744445554333
No 268
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=50.88 E-value=40 Score=34.03 Aligned_cols=94 Identities=6% Similarity=-0.162 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHH
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQE 221 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~ 221 (452)
..-..+|..+...|++++|...++....- . + .-...+.....++...+++..|....+++.... +++ .+
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~----p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~~--~~ 109 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIEL-D----K-KYIKGYYRRAASNMALGKFRAALRDYETVVKVK---PHD--KD 109 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-C----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTC--TT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--HH
Confidence 34467799999999999999999876521 1 1 124567777889999999999999999987653 222 22
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy292 222 LKLKYYRLMIELDQHEGSYLATCKHYR 248 (452)
Q Consensus 222 lk~~~~~~~~~~~~~~~df~ea~~~y~ 248 (452)
.... .-.+..+...++|.+|...|.
T Consensus 110 ~~~~--l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 110 AKMK--YQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHH--HHHHHHHHHHHHHCCC-----
T ss_pred HHHH--HHHHHHHHHHHHHHHHhcccc
Confidence 2221 211223566788999988888
No 269
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=50.58 E-value=1.8e+02 Score=28.13 Aligned_cols=93 Identities=9% Similarity=-0.030 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC-hHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKD-YIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d-~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
..++.++...|++++|...++.+..- .. .-.+.+.....++...++ +..|...++++...- +++ . .
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l-~P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~~--~--~ 167 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIEL-NA-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKN--Y--Q 167 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTC--H--H
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh-Cc-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CCC--H--H
Confidence 33455555555566655555544321 00 112333344444444553 555555555554432 111 1 1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAILT 252 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~~ 252 (452)
. +...|..+...++|-+|-.+|..++.
T Consensus 168 a--~~~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 168 V--WHHRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp H--HHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred H--HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 12224444445555555555555543
No 270
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=50.08 E-value=32 Score=34.94 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHhhhcCCCCHHHHHHHHHHHHHh--------hc
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVK----MIQECVTYVDKTPSKEIKVKLIETLRTV--------TE 131 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av~~----~v~~~~~~~~~~~~~~~~~~l~~~L~~~--------~e 131 (452)
+...++..|++.|+|+....++...+- +.+-+.+- -.+.+++...+..+......++.+.... +.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n---~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSN---FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -------------CTTTHHHHHHHTTC---HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhh---HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 778889999999999988877765532 22222211 1344444443334556666655532211 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHH----HHHHHHh
Q psy292 132 GKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRT----QIISKKI 207 (452)
Q Consensus 132 ~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a----~~~~~K~ 207 (452)
-.+-+.-+. ...++.+|++.|.+++|+.+|+.-.. ++ +.-+..+-+. .+....-...+. +.+..|+
T Consensus 201 l~L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~-----le-~ah~~~ftel-~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 201 LHIVVHADE---LEELINYYQDRGYFEELITMLEAALG-----LE-RAHMGMFTEL-AILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp TTTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTT-----ST-TCCHHHHHHH-HHHHHTTCHHHHHHHHHHHSTTS
T ss_pred HHHHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhC-----Cc-HHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHh
Confidence 112111111 22478999999999999999976321 11 2222222222 222222233332 3444555
Q ss_pred h-hhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 208 N-TKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 208 ~-~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
+ +++++.|.. .+...=...+|.+.++|-.|.....+-.
T Consensus 271 ni~k~~~~~~~------~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 271 NIPKVLRAAEQ------AHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp CHHHHHHHHHT------TTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred cCcHHHHHHHH------HHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 4 444433321 1111222567778899999988766663
No 271
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=49.57 E-value=53 Score=27.59 Aligned_cols=41 Identities=5% Similarity=0.002 Sum_probs=35.2
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++...||+.+|++..-+=..|.+|...|-|.-.-|..++
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCC
Confidence 48999999999999999999999999999999988887777
No 272
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=49.44 E-value=47 Score=27.30 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=33.3
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|+++.-+=..+..|+..|-|.-.-|..++
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 94 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDK 94 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCc
Confidence 578999999999999999999999999999999877665554
No 273
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=48.78 E-value=19 Score=31.28 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred HHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 358 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 358 ~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
+...+-..++++..||+.+|+|+.-+-+.+.+|...|.|. +.+|..
T Consensus 33 L~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 33 IKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 3333445799999999999999999999999999999874 456753
No 274
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=47.52 E-value=88 Score=23.56 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Q psy292 182 TLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTT 253 (452)
Q Consensus 182 e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t 253 (452)
..+.....++...+++..|...+.++.... ++. .. .+...|..+...++|-+|...|..++..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~--~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTY--SV----AWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC--HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCc--HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567778889999999999999999887653 332 22 2344588888999999999999988653
No 275
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=46.88 E-value=25 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=34.2
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE-e-ccCCcE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK-I-DRPAGI 406 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak-I-Dq~~gi 406 (452)
=..++...||+.+|+|..-|-+.+..|...|-+... . |+..|.
T Consensus 31 g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~ 75 (110)
T 1q1h_A 31 GTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGW 75 (110)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCce
Confidence 336899999999999999999999999999998654 2 244554
No 276
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=46.53 E-value=60 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=36.7
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
++...||+.+|++..-+=..+..|...|-+...-|+-...|...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 99999999999999999999999999999954445544455554
No 277
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=46.41 E-value=37 Score=28.13 Aligned_cols=44 Identities=2% Similarity=0.150 Sum_probs=34.5
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
.....++...||+.+|++..-+-..+.+|+..|-|.-.-|..++
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 34568999999999999999999999999999999776555444
No 278
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=46.38 E-value=36 Score=27.07 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=33.6
Q ss_pred ceeHHHHHHHh-CCChHHHHHHHHhhhhcCcEEEEec
Q psy292 366 RITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 366 ~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l~akID 401 (452)
++++..|++.+ |+|+.-+=+.|..|...|-+.-+.+
T Consensus 42 ~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 42 RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 36699999999 9999999999999999999998888
No 279
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=46.07 E-value=1.2e+02 Score=24.88 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 145 HILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 145 ~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..+|..+...|++++|...++..... ...-.+.+....++++..|++..|....+++...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 45678888888888888888764321 1122456777778888888888888888776544
No 280
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=46.06 E-value=52 Score=25.93 Aligned_cols=66 Identities=5% Similarity=-0.012 Sum_probs=47.1
Q ss_pred HHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc--EEEeccCCChhHHHHHHHHHHHHHHHHHHHH
Q psy292 371 RMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG--IINFARNKDPGEILNEWSASLNELMKLVNNT 436 (452)
Q Consensus 371 ~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g--iV~f~~~~~~~~~l~~W~~~i~~ll~~v~k~ 436 (452)
.|++.+++++.-+-..|.+|..+|-|...-+..+| -..|.=...-.+.+..|......+...++++
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~ 98 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGI 98 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445799999999999999999999887664343 2333322334567888888877777777664
No 281
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=45.95 E-value=24 Score=29.60 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=35.4
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEecc
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDR 402 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq 402 (452)
+-..++++..||+.+|+|+.-+-+.+.+|...|.+. +.+|.
T Consensus 17 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 17 QNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp HHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 335789999999999999999999999999999774 45665
No 282
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.53 E-value=22 Score=30.40 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE---EEeccC
Q psy292 357 IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT---AKIDRP 403 (452)
Q Consensus 357 i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~---akIDq~ 403 (452)
|+..-+--.++++..||+.+|+|+..+-+-+.+|...|.|. |.+|..
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 34444456789999999999999999999999999999764 677864
No 283
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=44.60 E-value=1.2e+02 Score=25.03 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=38.9
Q ss_pred HhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 361 AKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 361 sk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
.+.-..++.+.||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 41 ~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 41 NRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp HHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 333345677899999999999999999999999999988888777
No 284
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=44.39 E-value=42 Score=27.56 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=32.1
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++...||+.+++++.-+=..+.+|+..|-+.-.-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 35899999999999999999999999999999877666655
No 285
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=43.65 E-value=28 Score=28.60 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=32.4
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
.-.+++++.||+.+|+|+.-+-+.+.+|...|-+..
T Consensus 15 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 356899999999999999999999999999998753
No 286
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=43.59 E-value=2.3e+02 Score=27.18 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 143 LTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 143 l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
....++.+|...|++++|...+....
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 34567999999999999998887754
No 287
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=43.27 E-value=53 Score=26.12 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 346 KMLKHRVVEHNIRVMAKYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 346 ~~L~~~viEhNi~~isk~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
..+...+.+.=+.---.|=+++ +...||+.+|+|..-|-+.+..+..+|.|..+ +..|+.+-
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 3444444442222233456788 89999999999999999999999999987543 66676543
No 288
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=42.73 E-value=2.6e+02 Score=27.69 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=34.2
Q ss_pred hcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 153 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 153 ~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
..|++++|..+++.... ... .-.++++.-+.+....|++.+|..+..|+...
T Consensus 403 ~~~~~~~A~~~~e~al~-~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLK-KYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTCCHHHHHHHHHHHHH-HHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HcCChhHHHHHHHHHHH-HCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 46778888877776542 121 12456677777777778888887777777653
No 289
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=42.41 E-value=30 Score=26.17 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=32.5
Q ss_pred HHhhccceeHHHHHHHh-CCChHHHHHHHHhhhhcCcE
Q psy292 360 MAKYYTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTI 396 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l 396 (452)
-++.=++--|..++..| +..+-+|.+.+..||.+|++
T Consensus 15 k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 15 KSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred cccccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 33456677899999999 99999999999999999987
No 290
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=41.96 E-value=2.9e+02 Score=27.90 Aligned_cols=173 Identities=6% Similarity=0.029 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhhhhhHHHHH--HHHHHHHHhhhcCCC---CHHHHHHHHHHHHHhhcCcchHHH
Q psy292 64 ILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAV--VKMIQECVTYVDKTP---SKEIKVKLIETLRTVTEGKIYVEV 138 (452)
Q Consensus 64 ~l~~i~~l~~~~~~~~~l~~~~~~l~~~~~q~k~av--~~~v~~~~~~~~~~~---~~~~~~~l~~~L~~~~e~ki~lE~ 138 (452)
++..++..|.+.|+++...+.+..+..+ |--...+ +.+|..+... .... ......+..+.+....+..+-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~-~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-- 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLA-EAATESSPNPGLSRGFDIFKQMIVDKVVP-- 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTC-CCCSSSSCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhC-CchhhhhhcchHHHHHHHHHHHHHhCCCC--
Confidence 4677789999999999998888777642 2211112 1233322211 1100 0011111122222222222211
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCc
Q psy292 139 ERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDD 218 (452)
Q Consensus 139 er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~ 218 (452)
-...-..|...|.+.|++++|.+++.++... | +.+. +..+--.+..|...|++..|..+.......-+. ++
T Consensus 104 -d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g-~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd-- 174 (501)
T 4g26_A 104 -NEATFTNGARLAVAKDDPEMAFDMVKQMKAF--G-IQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PE-- 174 (501)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T-CCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CC--
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CC--
Confidence 1112245678888999999999999998743 2 2221 234555677788999999998888776543212 22
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 219 VQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 219 ~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. . -|..++.-+...+++-+|...|.+.-+..
T Consensus 175 -~---~-ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 175 -E---P-ELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp -H---H-HHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -H---H-HHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 1 1 24566777788899999999998885543
No 291
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=41.96 E-value=20 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=24.1
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSS 389 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~ 389 (452)
|=+.+++.||..+|++++++|..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998764
No 292
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=41.66 E-value=40 Score=27.38 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.4
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+-..+..|...|-+.-.-|..++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 458999999999999999999999999999999776664443
No 293
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.34 E-value=76 Score=28.05 Aligned_cols=42 Identities=2% Similarity=-0.011 Sum_probs=35.5
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...++...||+.+|++..-+=..|.+|...|-|.-.-|..++
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 357999999999999999999999999999999888876665
No 294
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=41.10 E-value=5.7 Score=37.59 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred cceeHHHHHHHh-CCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 365 TRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 365 s~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
.=|+++.|++.| ++|++++.+.+-.|+.+|.|+..||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 456778899888 79999999999999999999999984
No 295
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=40.99 E-value=23 Score=27.12 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=30.7
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
+|...||+.||+|...|-+.|-+|..+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998866
No 296
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=40.58 E-value=1.3e+02 Score=23.44 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=33.8
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
..+++..||+.+|+|+.-+-..|..|...|.+...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987643
No 297
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=40.42 E-value=1.7e+02 Score=24.94 Aligned_cols=129 Identities=12% Similarity=0.212 Sum_probs=80.6
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh-----hhHHHH
Q psy292 24 EKIPAAIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRR-----SQLKQA 98 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~-----~q~k~a 98 (452)
..+-+|++..-+|..++.++.+...-++.. -....| ++..++. .-+-+.+.+.+..+.+-+ |.+|.-
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssn-i~E~NW---~ICNiiD----~a~C~y~v~vLd~IGkiFDis~C~NlKrV 80 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSST-KSEYNW---FICNLLE----SIDCRYMFQVLDKIGSYFDLDKCQNLKSV 80 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-HHHHTH---HHHHHHH----HCCHHHHHHHHHHHGGGSCGGGCSCTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCC-ccccce---eeeecch----hhchhHHHHHHHHHhhhcCcHhhhcHHHH
Confidence 456678888889989999998888766431 122333 3444432 446666666666665422 344444
Q ss_pred HH---------HHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy292 99 VV---------KMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQEL 167 (452)
Q Consensus 99 v~---------~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l 167 (452)
|. +.|+.+++++-.-...+...+++.-| +-...+ ...+-.++|..|.+.|+..+|-++|.+.
T Consensus 81 i~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~--l~n~~~-----~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 81 VECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREI--LKNNEV-----SASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHH--C--CCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHH--hccCCC-----ChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 43 46888888876444445555554432 112222 2446688999999999999999999863
No 298
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=40.15 E-value=1.3e+02 Score=25.59 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh
Q psy292 141 ARLTHILAKMKEDEG---DVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK 210 (452)
Q Consensus 141 ~~l~~~La~i~e~~g---d~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~ 210 (452)
......+|--+...+ ++.+|..+|+++.... ++..+-+.+....--|...+||.+|..+.+++...
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345666677777776 8889999999876531 24466777777777889999999999999988765
No 299
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=39.73 E-value=42 Score=27.60 Aligned_cols=43 Identities=5% Similarity=0.085 Sum_probs=33.8
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE--EeccCCc
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA--KIDRPAG 405 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a--kIDq~~g 405 (452)
....++...||+.+|++..-+=..+..|...|-+.- ..|..++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 467899999999999999999999999999999986 3355555
No 300
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=38.73 E-value=56 Score=27.40 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=32.3
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
..++.+.||+.+|+|+..+++.+..+...|-+...=-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 4689999999999999999999999999998876433
No 301
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=38.42 E-value=97 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.332 Sum_probs=26.4
Q ss_pred hccceeHHHHHHHhC-----------CChHHHHHHHHhhhhcCcEEE
Q psy292 363 YYTRITLQRMCDLLG-----------LPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~-----------ls~~evE~~ls~mI~~~~l~a 398 (452)
-+.++.++||...|. +|.++++..|.++|.+|++.+
T Consensus 19 N~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 19 NLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 356666666666551 356888999999999998864
No 302
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.35 E-value=1e+02 Score=34.84 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--C-cc--------------hHHHHHHHHHHHHHHhhccChHHHHHHHHH
Q psy292 144 THILAKMKEDEGDVTEAANIIQELQVETYG--S-ME--------------KKEKVTLILEQMRLCLAKKDYIRTQIISKK 206 (452)
Q Consensus 144 ~~~La~i~e~~gd~~eA~~iL~~l~~Et~~--~-~~--------------~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K 206 (452)
+..+|..+...|++++|+..++....-... . .. ......||+.+++|+=..+-+.-+-.+++.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999999764311000 0 00 011346899999999888888877777777
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q psy292 207 INTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVL 272 (452)
Q Consensus 207 ~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~~~d~~~~~~~Lk~~vl 272 (452)
|.... ..++ ++++..++...-..+.+-+.|-+|+......- |.+.+..||+.+|.
T Consensus 925 Ai~~~--~~~~--~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-------d~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 925 ADASK--ETDD--EDLSIAITHETLKTACAAGKFDAAHVALMVLS-------TTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHC--CSCC--HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-------HSSSCHHHHHHHHH
T ss_pred HHHhc--cCCC--hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-------CHHHHHHHHHHHHH
Confidence 75543 2344 67777666655667777788888866655442 22345678888764
No 303
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=38.18 E-value=37 Score=28.20 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=36.1
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE---EeccC
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA---KIDRP 403 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a---kIDq~ 403 (452)
+--.+++...||+.+|+|+.-+-+.+.+|...|.|.. .+|..
T Consensus 13 ~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 13 QYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp TTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 3355899999999999999999999999999998754 67753
No 304
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=37.20 E-value=45 Score=28.66 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=35.7
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGII 407 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV 407 (452)
..++.+.||+.+|+|+..+++.+..+...|-+...=-+..|+.
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQ 69 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeE
Confidence 4699999999999999999999999999998876533333443
No 305
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=36.90 E-value=1.2e+02 Score=22.07 Aligned_cols=67 Identities=12% Similarity=-0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCCC
Q psy292 181 VTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI 256 (452)
Q Consensus 181 ~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~~~ 256 (452)
.+.+......++..+++..|.....++.... +++ ... +...|..+...++|-+|-..|..++.....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~--~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQN--PVG----YSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTC--HHH----HHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC--HHH----HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4566777888999999999999999887653 332 222 344588889999999999999999876543
No 306
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=36.77 E-value=30 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=27.2
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
..++...||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 67999999999999999999999999999999777665555
No 307
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=36.35 E-value=1.4e+02 Score=31.33 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=52.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh-----hccCCCCchHHHHH
Q psy292 150 MKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK-----FFDDEKDDVQELKL 224 (452)
Q Consensus 150 i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~-----~~~~~~~~~~~lk~ 224 (452)
+....|++++|.++.+.+.- . ..+-...++++..+|+..|+..+.++... +....++ ++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~~--------~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~--~~~-- 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDESA--------E---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN--KEG-- 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCCC--------H---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC--HHH--
T ss_pred hhhhcCCHHHHHHHHHhhCc--------H---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC--HHH--
Confidence 34566888888877654321 1 34556677778888888888777776321 1111232 222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 225 KYYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 225 ~~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
-..++......++|..|+.+|...
T Consensus 726 --~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 726 --LVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCchHHHHHHHHHc
Confidence 123466777788888888888876
No 308
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=35.41 E-value=65 Score=26.16 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 346 KMLKHRVVEHNIRVMAKYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 346 ~~L~~~viEhNi~~isk~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
..+...+.+.-+.---+|=.++ |...||+.+|+|..-|-+.+..+..+|.|..+ +..|..+-.
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 4444444442222223456788 69999999999999999999999999987653 556765543
No 309
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=35.28 E-value=23 Score=32.02 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=35.7
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCC-------ChhHHHHHHHHHHHHHHHHHH
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNK-------DPGEILNEWSASLNELMKLVN 434 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~-------~~~~~l~~W~~~i~~ll~~v~ 434 (452)
-.+|-..||+.+|++++-+-+.+.+|..+|-|.- ..|-|..-++. ....-+..|+..+++|-+.++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 3678999999999999999999999999997743 23433332221 112235667777777655544
No 310
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=34.64 E-value=80 Score=28.88 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=39.4
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEecc
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFAR 411 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~ 411 (452)
-....|.+.||+.+|+|+..|+..|.+|...|-+. =..+|.|..+.
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 37899999999999999999999999999999876 23567777664
No 311
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=34.30 E-value=71 Score=26.00 Aligned_cols=47 Identities=6% Similarity=0.005 Sum_probs=39.3
Q ss_pred hhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 362 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 362 k~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
+|=.++ +...||+.+|+|..-|-+.+..+..+|.|.. -+..|+.+-.
T Consensus 30 ~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 456788 9999999999999999999999999998854 4666775543
No 312
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=34.11 E-value=50 Score=32.45 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=38.1
Q ss_pred HHHHHHH---HHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 352 VVEHNIR---VMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 352 viEhNi~---~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
++++|.. .+.+-...+|-..||+.+|+|..-+-..+.+|+..|.+..
T Consensus 13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4455644 3344478899999999999999999999999999998743
No 313
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=33.12 E-value=1.4e+02 Score=24.66 Aligned_cols=62 Identities=6% Similarity=0.088 Sum_probs=46.2
Q ss_pred ccceeHHHHHHHh-CCChHHHHHHHHhhhhcCcEEEEeccCCc-EEEeccCCC------hhHHHHHHHHH
Q psy292 364 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAG-IINFARNKD------PGEILNEWSAS 425 (452)
Q Consensus 364 Ys~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l~akIDq~~g-iV~f~~~~~------~~~~l~~W~~~ 425 (452)
....+++.|++.+ |+|..-+-..|..|..+|-|.-+.+..++ .+.+.=... .-..+.+|...
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGES 106 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHH
Confidence 5678999999999 99999999999999999999877776554 233332211 23567778754
No 314
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.52 E-value=57 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=24.9
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
++.-.+...||+.+|+|+.-|...+.+..
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46778999999999999999998887654
No 315
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=32.30 E-value=1.6e+02 Score=23.50 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=32.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
...++..||+.+|+|..-+-..|..|...|-+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3689999999999999999999999999998876543
No 316
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=32.16 E-value=1.2e+02 Score=24.27 Aligned_cols=36 Identities=11% Similarity=0.314 Sum_probs=32.8
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
...+++..||+.+|+|..-+-+.|..|...|.+...
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 356899999999999999999999999999988764
No 317
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=31.97 E-value=62 Score=32.14 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=37.8
Q ss_pred HHHHHHHH---HHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 352 VVEHNIRV---MAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 352 viEhNi~~---isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
++++|.+. +.+-...+|-..||+.+|+|..-+-+.+.+|+..|.+.-
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34455443 334477899999999999999999999999999998754
No 318
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=31.92 E-value=73 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=25.6
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVV 392 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~ 392 (452)
+.-.|...||+.+|+|+.-|...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999999999999999998887653
No 319
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.90 E-value=67 Score=20.23 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVV 392 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~ 392 (452)
....+...||+.+|+|..-|...+...-.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 45679999999999999998888765433
No 320
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.74 E-value=60 Score=24.50 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=32.1
Q ss_pred ccceeHHHHHHHhCCChH-HHHHHHHhhhhcCcEEE
Q psy292 364 YTRITLQRMCDLLGLPIE-ETEEFLSSMVVSKTITA 398 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~-evE~~ls~mI~~~~l~a 398 (452)
-.-.+...||+.||++.. .|-..|..|-.+|.+..
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 457899999999999999 99999999999999973
No 321
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=31.39 E-value=1.2e+02 Score=23.37 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=33.2
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
..+++..||+.+|+|..-+-+.|..|...|.+...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4589999999999999999999999999999977543
No 322
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.16 E-value=1.7e+02 Score=27.54 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhh
Q psy292 29 AIKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRR 92 (452)
Q Consensus 29 ~~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~~~ 92 (452)
+..+.++|++++|++.+.+--|.. +.|.. .=..+.++++=.|+|+.-..++..+.+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~----~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 467788999999999999866633 23322 23467888999999999999999888543
No 323
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=30.84 E-value=3.7e+02 Score=25.88 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHH
Q psy292 145 HILAKMKEDEGD-VTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELK 223 (452)
Q Consensus 145 ~~La~i~e~~gd-~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk 223 (452)
..++.++...|+ +++|...++....- . . .-...+.....++...+++..|...++|+...- +++ . .
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~al~l-~----P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld---P~~--~--~ 201 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITAIIEE-Q----P-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD---AKN--Y--H 201 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH-C----T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTC--H--H
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHH-C----C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---ccC--H--H
Confidence 445777778885 99999988876532 1 1 123456666677778899999998888887653 332 1 2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Q psy292 224 LKYYRLMIELDQHEGSYLATCKHYRAILTTP 254 (452)
Q Consensus 224 ~~~~~~~~~~~~~~~df~ea~~~y~e~~~t~ 254 (452)
. +...|..+...++|-+|..+|..++...
T Consensus 202 a--~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 202 A--WQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp H--HHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 2 2334777778888999999999887754
No 324
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=30.82 E-value=1.2e+02 Score=22.69 Aligned_cols=32 Identities=6% Similarity=0.121 Sum_probs=30.8
Q ss_pred ceeHHHHHHHhCCChHH-HHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEE-TEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~e-vE~~ls~mI~~~~l~ 397 (452)
.++...||+.+|++..- +=..+.+|+..|-+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999997
No 325
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=30.69 E-value=1.7e+02 Score=28.49 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 135 YVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 135 ~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
.++..|..+...++..+.+.|++.+|...+..+... ..+ .| +++-..|+.+...|+...|...+.++....
T Consensus 165 ~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~--~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 165 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--HPY--RE--PLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT--CH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445556666677888888999999999888876432 222 22 256667888888888888887777776554
No 326
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=30.13 E-value=2.8e+02 Score=24.18 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=53.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhhhh----hc-cCCCCchHHHHHH
Q psy292 151 KEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTK----FF-DDEKDDVQELKLK 225 (452)
Q Consensus 151 ~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~----~~-~~~~~~~~~lk~~ 225 (452)
-.+.|+++.|.++..++..+ ..+=.....++..+|+.-|+..+.++... ++ ...|+ .+ ++
T Consensus 15 AL~lg~l~~A~e~a~~l~~~-----------~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~--~e-~L- 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLNDS-----------ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD--VN-KL- 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHCCH-----------HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC--HH-HH-
T ss_pred HHhcCCHHHHHHHHHHhCCH-----------HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC--HH-HH-
Confidence 45679999999998876432 13333455567777777777776666421 11 12333 11 11
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q psy292 226 YYRLMIELDQHEGSYLATCKHYRAI 250 (452)
Q Consensus 226 ~~~~~~~~~~~~~df~ea~~~y~e~ 250 (452)
.-++.+...+++|.-|+.+|...
T Consensus 80 --~kla~iA~~~g~~n~af~~~l~l 102 (177)
T 3mkq_B 80 --SKMQNIAQTREDFGSMLLNTFYN 102 (177)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHCccHHHHHHHHHHc
Confidence 34677888899999999999887
No 327
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=30.12 E-value=1.3e+02 Score=22.72 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=32.0
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
..+++..||+.+|+|..-+-+.|..|...|.+...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45899999999999999999999999999998753
No 328
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=29.07 E-value=1.3e+02 Score=25.06 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=37.9
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
....+++.|++.+|+|..-+=..|..|...|-|.-..+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999988876554
No 329
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=28.90 E-value=1.4e+02 Score=20.36 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=33.3
Q ss_pred hccceeHHHHHHHh-----CCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 363 YYTRITLQRMCDLL-----GLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 363 ~Ys~Itl~~La~ll-----~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
--..+|.+.|++.| ++|..-|-+.|.. .|.+ ++..++|...|+
T Consensus 16 ~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 16 SNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYKYS 63 (64)
T ss_dssp HSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEEEE
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCceeee
Confidence 34678999999999 9999999988883 3655 677777776653
No 330
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.84 E-value=4.1e+02 Score=25.83 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHhhccChHHHHHHHHHhh
Q psy292 142 RLTHILAKMKEDEGDVTEAANIIQELQVET--YGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKIN 208 (452)
Q Consensus 142 ~l~~~La~i~e~~gd~~eA~~iL~~l~~Et--~~~~~~~~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~ 208 (452)
.+....+.+|...||..+|-.+|..+..-. .+..+..-...|+.-...+|-..+++..+....-...
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455677999999999999999999876321 2445556667777777888888888887655444433
No 331
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=28.70 E-value=2.3e+02 Score=22.87 Aligned_cols=63 Identities=8% Similarity=0.177 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 346 KMLKHRVVEHNIRVMAKYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 346 ~~L~~~viEhNi~~isk~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
..+...+.+.=+.---+|=.++ +...||+.||+|..-|-+-+..+..+|.+..+ +..|..+-.
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~ 80 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeC
Confidence 4444555543222233567788 88899999999999999999999999988754 667875433
No 332
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.61 E-value=1.3e+02 Score=21.52 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=26.1
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVV 392 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~ 392 (452)
++.-.+...||+.+|+|+.-|...+.+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578899999999999999999988877653
No 333
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=28.59 E-value=1.9e+02 Score=23.20 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=41.7
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHHHHHHHHHH
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKL 432 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~~i~~ll~~ 432 (452)
+..+.++..+|+++++++..+..++..|++..- +...+...+.. +.++.|..++...+..
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~l~~~L~~ 77 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAIST-----ERYQAWWQAVTRALEE 77 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEH-----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecH-----HHHHHHHHHHHHHHHH
Confidence 444999999999999999999999999986543 33222212332 3566677666665554
No 334
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=27.61 E-value=89 Score=27.50 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=33.1
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
.+++...||+.+|+|+.-+-+.+..|...|.|...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999765
No 335
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=27.17 E-value=1.1e+02 Score=25.06 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=38.4
Q ss_pred hhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 362 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 362 k~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
+|=.++ +...||+.||+|..-|-+.+..+..+|.+.. -+..|+.+-
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 456788 8999999999999999999999999998754 466676543
No 336
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.13 E-value=64 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.8
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
...|...||+.+|+|+.-|...+.+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999988776654
No 337
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=26.56 E-value=85 Score=25.32 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=32.6
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
.-..+++..||+.+|+|..-+-+.+..|...|-+.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 456799999999999999999999999999997764
No 338
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=26.53 E-value=47 Score=21.85 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=21.3
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhh
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSM 390 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~m 390 (452)
.+++..+|..+|+++.++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4788999999999999988877764
No 339
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.31 E-value=5.1e+02 Score=26.00 Aligned_cols=161 Identities=9% Similarity=0.053 Sum_probs=87.4
Q ss_pred HHHHhcCCcHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccC---------HHHHHHHHHHHHhhhhhHHHH--
Q psy292 30 IKMAAEGKFHDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKN---------WTALNEHITMLTKRRSQLKQA-- 98 (452)
Q Consensus 30 ~~~~~~~~~~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~---------~~~l~~~~~~l~~~~~q~k~a-- 98 (452)
....+.|++++|++.+-.+.+.-- ..|. .....++..|...+. ++...+.+..+.. .|-....
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv-~pd~----~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~t 107 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGV-QLSQ----YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEAT 107 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTC-CCCH----HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHH
Confidence 444678999999999988654321 2232 234556677776554 3333333333332 1111111
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchH
Q psy292 99 VVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKK 178 (452)
Q Consensus 99 v~~~v~~~~~~~~~~~~~~~~~~l~~~L~~~~e~ki~lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~ 178 (452)
-+.+|+.+.. ..+.+.-.++++.+. +..+-. ....-..|-..|.+.|++++|.+++.++... |-. +.
T Consensus 108 yn~lI~~~~~----~g~~~~A~~l~~~M~---~~g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G~~-Pd 174 (501)
T 4g26_A 108 FTNGARLAVA----KDDPEMAFDMVKQMK---AFGIQP---RLRSYGPALFGFCRKGDADKAYEVDAHMVES--EVV-PE 174 (501)
T ss_dssp HHHHHHHHHH----HTCHHHHHHHHHHHH---HTTCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCC-CC
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHH---HcCCCC---ccceehHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-CC
Confidence 1122322222 122233333333221 111111 1112244567788999999999999998743 222 22
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHhhhhh
Q psy292 179 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKF 211 (452)
Q Consensus 179 ~k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~ 211 (452)
. ..+--.++.|...|++.+|..++.+-....
T Consensus 175 ~--~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 175 E--PELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 2 245556788899999999999988876654
No 340
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=26.14 E-value=1.3e+02 Score=26.11 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=30.3
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
-.+|-+.||+.+|++++-+-+.+.+|..+|-|.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 468899999999999999999999999999874
No 341
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=25.80 E-value=2.2e+02 Score=21.54 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=33.9
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEecc
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDR 402 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq 402 (452)
...++..||+.+|+|..-+-+.|..|...|-+...-+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45899999999999999999999999999999876543
No 342
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=25.74 E-value=3.1e+02 Score=23.34 Aligned_cols=143 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcc----ChHHHHHHHHHhhhhhccCCC
Q psy292 141 ARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKK----DYIRTQIISKKINTKFFDDEK 216 (452)
Q Consensus 141 ~~l~~~La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~~~----d~~~a~~~~~K~~~~~~~~~~ 216 (452)
......|+.+|...|++++|...++... ...-.+.+.....+|.. + |+.+|..+..++ -+.|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~--------~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-----~~~g 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAA--------AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA-----VEAG 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-----HHCC
Q ss_pred CchHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHHHHhCCCChhhhHhHH
Q psy292 217 DDVQELKLKYYRLMIELDQH----EGSYLATCKHYRAILTTPCIQSDP----IQRHAVLQNVVLYLMLAPYDNEQSDLTH 288 (452)
Q Consensus 217 ~~~~~lk~~~~~~~~~~~~~----~~df~ea~~~y~e~~~t~~~~~d~----~~~~~~Lk~~vl~~ILa~~~~~~~~ll~ 288 (452)
+ +.-...+ +.++.. .+|+.+|..+|..+ ...++ +.....|-.+-....-.+.+..++--.-
T Consensus 84 ~--~~a~~~L----g~~y~~g~g~~~d~~~A~~~~~~A-----~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 84 S--KSGEIVL----ARVLVNRQAGATDVAHAITLLQDA-----ARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp C--HHHHHHH----HHHHTCGGGSSCCHHHHHHHHHHH-----TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred C--HHHHHHH----HHHHHcCCCCccCHHHHHHHHHHH-----HHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q ss_pred hhhhhhccCCchHHHHHHHHh
Q psy292 289 RVLEDKLLNEIPLYKGLLQWF 309 (452)
Q Consensus 289 ~~~~~~~~~~ip~~~~L~~~f 309 (452)
+...+. ....+.+..|..+|
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHH
No 343
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.53 E-value=36 Score=26.44 Aligned_cols=46 Identities=7% Similarity=0.104 Sum_probs=37.3
Q ss_pred hccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 363 YYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 363 ~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
+=..+ +...||+.+|+|..-|-+.+..+...|.+.. -+..|+....
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 44677 9999999999999999999999999998864 3445764433
No 344
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.36 E-value=52 Score=32.09 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=35.7
Q ss_pred HHHHHHHHHH---HHHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEE
Q psy292 347 MLKHRVVEHN---IRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITA 398 (452)
Q Consensus 347 ~L~~~viEhN---i~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~a 398 (452)
.+-++++.+| |+.+.+ ...+|-..||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp ----------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444556665 344556 78999999999999999999999999999998854
No 345
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=24.80 E-value=3.1e+02 Score=29.66 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy292 180 KVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLATCKHY 247 (452)
Q Consensus 180 k~e~~Le~~rl~l~~~d~~~a~~~~~K~~~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~df~ea~~~y 247 (452)
..+.+..|++.++..+|+.-|-.+++|+-.....+... |.. .+..|..-+||-.|---.
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~t--W~~-------La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFES--WYN-------LARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH--HHH-------HHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHH--HHH-------HHHHHHHhccHHHHHHHH
Confidence 35678889999999999999999999986665333322 433 266777777777765443
No 346
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.47 E-value=61 Score=27.78 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.8
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.+|-+.||+.+|++++-+-+.+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57889999999999999999999999999874
No 347
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=24.45 E-value=72 Score=27.38 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-ccceeHHHHHHHhCCCh
Q psy292 341 GQKCFKMLKHRVVEHNIRVMAKY-YTRITLQRMCDLLGLPI 380 (452)
Q Consensus 341 g~~~~~~L~~~viEhNi~~isk~-Ys~Itl~~La~ll~ls~ 380 (452)
|..+-..-+.+|++--+..+.+. |..+|++.||+..|+|.
T Consensus 6 ~~~r~~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk 46 (211)
T 3bhq_A 6 GETRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASK 46 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCH
T ss_pred cCCccHhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCH
Confidence 33444566677888777777765 99999999999999996
No 348
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=24.25 E-value=53 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=24.1
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHh
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSS 389 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~ 389 (452)
|=+.+++.||+.+|++++++|..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998764
No 349
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.21 E-value=51 Score=26.93 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=31.5
Q ss_pred eeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEec
Q psy292 367 ITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 367 Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akID 401 (452)
+|.+.||+.+|+|+..|-+.|..++..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 89999999999999999999999999998865544
No 350
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=24.19 E-value=1.4e+02 Score=22.60 Aligned_cols=55 Identities=9% Similarity=0.142 Sum_probs=44.6
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCC-----cEEEeccCCChhHHHHHHHHH
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPA-----GIINFARNKDPGEILNEWSAS 425 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~-----giV~f~~~~~~~~~l~~W~~~ 425 (452)
=|+-+.|+.++|+++..+.+.-...=.+|+=+-+++.-. +.+.++. +.++.|.++
T Consensus 10 WV~e~~l~a~tGLs~~tIkryR~~~WlEGrhyrrvspdG~p~~~S~~~YN~-----~~I~~Wie~ 69 (78)
T 2kvv_A 10 WMVEKALMVRTGLGARQIESYRQGAWIEGVHFKRVSPSGEKTLRGTTWYNY-----PEINKFIRD 69 (78)
T ss_dssp EECHHHHHHHHCCCHHHHHHHHTTTCCBTTTEEEECSSSSCCTTCEEEEEH-----HHHHHHHHH
T ss_pred hhCHHHHHHHHCCCHHHHHHHHhchhhheeeeEeeCCCCCCCcCceEEEcH-----HHHHHHHHH
Confidence 367889999999999999999999999999998888544 3555554 478889865
No 351
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=23.82 E-value=2.5e+02 Score=21.55 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=37.3
Q ss_pred ccceeHHHHHHHh-CCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 364 YTRITLQRMCDLL-GLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 364 Ys~Itl~~La~ll-~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
...+++..|++.+ |++..-+-..|..|...|-+..+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 59999999999999999999988876554
No 352
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.80 E-value=1.1e+02 Score=22.58 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=25.4
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
++.-.+...||+.+|+|+.-|...+.+..
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788999999999999999998887654
No 353
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=23.80 E-value=1.8e+02 Score=21.74 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=32.5
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
=..+|...||..||+|-..|-+.|-.|-..|.+...
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 445999999999999999999999999999988764
No 354
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.58 E-value=93 Score=21.60 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=24.9
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
.|+...|...||+.+|+|+.-|...+.+..
T Consensus 27 ~~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 27 TQLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357789999999999999998887776653
No 355
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.42 E-value=1e+02 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.6
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
...|++.||+.+|+|+.-|...+.+.+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAl 64 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKAL 64 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 679999999999999999888776654
No 356
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=23.20 E-value=2.6e+02 Score=22.77 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
..++...||+.+|+|..-+-..|..|...|-+.-.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56899999999999999999999999999977544
No 357
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.15 E-value=91 Score=23.28 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=24.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
...|...||+.+|+|+.-|...+.+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999998887765
No 358
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.06 E-value=2.1e+02 Score=21.58 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHhhccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 358 RVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 358 ~~isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.++...=+=++-..||+.+|++-.+|.+.+-+|=-+|+|.
T Consensus 26 e~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 26 QVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 3555555678899999999999999999999999999864
No 359
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=22.85 E-value=1.1e+02 Score=23.88 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=37.5
Q ss_pred hhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 362 KYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 362 k~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
++=..+ +...||+.||+|..-|-+.+..|..+|.|...=.-..|+.+.
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 445667 999999999999999999999999999886543113566443
No 360
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=22.83 E-value=69 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=33.9
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
.+|-+.||+.+|++++-+-+.+.+|-.+|-|.- ..|-|...
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~ 209 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITIL 209 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEe
Confidence 678899999999999999999999999998742 24544443
No 361
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.82 E-value=2.1e+02 Score=20.72 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=36.5
Q ss_pred cceeHHHHHHHh-----CCChHHHHHHHHhhhhcCcEEEEeccCCcEEEec
Q psy292 365 TRITLQRMCDLL-----GLPIEETEEFLSSMVVSKTITAKIDRPAGIINFA 410 (452)
Q Consensus 365 s~Itl~~La~ll-----~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~ 410 (452)
.-++.+.|++.+ ++|..-|-+.|..|...|.+. ++.-++|...|+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~-~~~~~~~~~~y~ 81 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT-RHNFEGGKSVFE 81 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE-EEECGGGCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE-EEeeCCCceEee
Confidence 468999999999 999999999999999999886 444445555553
No 362
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=22.62 E-value=69 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=31.0
Q ss_pred ccceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 364 YTRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 364 Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
--.+|-+.||+.+|++++-+-+.+++|-.+|-|.
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3567899999999999999999999999999885
No 363
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.61 E-value=70 Score=27.42 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.9
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.+|-+.||+.+|++++-+-+.+++|-.+|.|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 57889999999999999999999999999875
No 364
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=22.44 E-value=64 Score=24.57 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=33.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEeccCCChhHHHHHHHH----HHHHHHHHHHHHHh
Q psy292 369 LQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEWSA----SLNELMKLVNNTTH 438 (452)
Q Consensus 369 l~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f~~~~~~~~~l~~W~~----~i~~ll~~v~k~~~ 438 (452)
-..||+.||++..+++.+-.. +.++...|+.|.. .+.+|+..+.++++
T Consensus 24 W~~LA~~Lg~~~~~I~~~~~~----------------------~~pt~~lL~~W~~r~~atv~~L~~aL~~igR 75 (85)
T 1ngr_A 24 WRHLAGELGYQPEHIDSFTHE----------------------ACPVRALLASWGAQDSATLDALLAALRRIQR 75 (85)
T ss_dssp HHHHHHHTTCCHHHHHHHHHS----------------------SCHHHHHHHHGGGSTTCBHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHcC----------------------CCHHHHHHHHHHhCCCCCHHHHHHHHHHcCc
Confidence 357999999999888876431 2346788999976 36677776665543
No 365
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=22.42 E-value=2.7e+02 Score=21.53 Aligned_cols=35 Identities=6% Similarity=0.156 Sum_probs=31.6
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAK 399 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ak 399 (452)
..+++..||+.+|+|..-+-+.|..|...|.+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999987543
No 366
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=22.40 E-value=72 Score=27.37 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=30.1
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
-.+|-+.||+.+|++++-+-+.+.+|..+|-|.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 347889999999999999999999999999875
No 367
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=22.23 E-value=72 Score=27.97 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=30.5
Q ss_pred cceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 365 TRITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 365 s~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
-.+|-+.||+.+|++++-+-+.+++|-.+|-|.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 467899999999999999999999999999885
No 368
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.16 E-value=2.1e+02 Score=22.99 Aligned_cols=32 Identities=3% Similarity=0.185 Sum_probs=27.2
Q ss_pred HHhhccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 360 MAKYYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 360 isk~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
+..++.-.|...||+.+|+|+.-|...+.+..
T Consensus 118 ~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 118 LTYLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33689999999999999999999988877654
No 369
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=22.08 E-value=3e+02 Score=21.81 Aligned_cols=88 Identities=10% Similarity=-0.064 Sum_probs=62.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh----ccChHHHHHHHHHhhhhhccCCCCchHHH
Q psy292 147 LAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLA----KKDYIRTQIISKKINTKFFDDEKDDVQEL 222 (452)
Q Consensus 147 La~i~e~~gd~~eA~~iL~~l~~Et~~~~~~~~k~e~~Le~~rl~l~----~~d~~~a~~~~~K~~~~~~~~~~~~~~~l 222 (452)
|+.+|...+.+++|.+.++.... .+. .+-+.....+|.. .+|+.+|..+.+|+... |+ ++-
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~--~g~------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g~--~~a 95 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE--LNS------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----ND--QDG 95 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH--TTC------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TC--HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc--CCC------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----CC--HHH
Confidence 89999998999998888876432 121 2344555666776 78999999999998754 22 222
Q ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcC
Q psy292 223 KLKYYRLMIELDQH----EGSYLATCKHYRAILTT 253 (452)
Q Consensus 223 k~~~~~~~~~~~~~----~~df~ea~~~y~e~~~t 253 (452)
.| ..+.++.. .+|+.+|..+|..+.+.
T Consensus 96 --~~--~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 96 --CL--ILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp --HH--HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --HH--HHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 12 23677777 89999999999998654
No 370
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=21.85 E-value=2.8e+02 Score=21.44 Aligned_cols=38 Identities=8% Similarity=0.088 Sum_probs=34.4
Q ss_pred ccceeHHHHHHHhC----CChHHHHHHHHhhhhcCcEEEEec
Q psy292 364 YTRITLQRMCDLLG----LPIEETEEFLSSMVVSKTITAKID 401 (452)
Q Consensus 364 Ys~Itl~~La~ll~----ls~~evE~~ls~mI~~~~l~akID 401 (452)
...+|...||+.++ ++..-+=..|.+|...|-+.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 46799999999999 889999999999999999977666
No 371
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.83 E-value=4.3e+02 Score=23.62 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy292 136 VEVERARLTHILAKMKEDEGDVTEAANIIQELQ 168 (452)
Q Consensus 136 lE~er~~l~~~La~i~e~~gd~~eA~~iL~~l~ 168 (452)
.|..+.-+..+..-+..+.|.+++|.++|+.+-
T Consensus 112 heei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 112 HEEIQNLIKIQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHh
Confidence 344455566666677888889999998888754
No 372
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.80 E-value=1.3e+02 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.8
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
.||.-.|...||+.+|+|+.-|...+.+..
T Consensus 49 ~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 49 SYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468899999999999999999988777653
No 373
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=21.67 E-value=74 Score=27.80 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.+|-+.||+.+|++++-+-+.+.+|..+|-|.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999774
No 374
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.57 E-value=65 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=29.5
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.+|-+.||+.+|+|++-+-+.+.+|..+|-|.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 47888999999999999999999999999874
No 375
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.34 E-value=76 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.7
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.++-+.||+.+|++++-+-+.+++|..+|.|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999875
No 376
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=21.33 E-value=3.1e+02 Score=23.19 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=45.6
Q ss_pred hhhHHHHHHHhcCCc---HHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 24 EKIPAAIKMAAEGKF---HDAIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~---~~a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
..+.=+..+++++++ .+++..|..+-+.. +-.....+++.+.--|++.|+|+.-..++..+..
T Consensus 34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 456667788888744 47777777755422 0113456999999999999999999988887774
No 377
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=21.27 E-value=1.1e+02 Score=25.34 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHh-hccceeHHHHHHHhCCCh
Q psy292 346 KMLKHRVVEHNIRVMAK-YYTRITLQRMCDLLGLPI 380 (452)
Q Consensus 346 ~~L~~~viEhNi~~isk-~Ys~Itl~~La~ll~ls~ 380 (452)
..-+.++++.-+..+.+ -|..+|+..||+..|+|.
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~ 41 (199)
T 3qbm_A 6 QETRERVVAQAAALFNVSGYAGTAISDIMAATGLEK 41 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCH
T ss_pred hhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCc
Confidence 34455666666666664 499999999999999996
No 378
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=21.20 E-value=3.4e+02 Score=22.18 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=45.2
Q ss_pred hhhHHHHHHHhcCCcHH---HHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy292 24 EKIPAAIKMAAEGKFHD---AIDSLLALEKQTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTK 90 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~---a~~~l~~lek~~r~~~d~~~~~~~l~~i~~l~~~~~~~~~l~~~~~~l~~ 90 (452)
..+.=|..++.+.++.. +|..|.++-+. . +......++..++--|++.|+|+.-..++..+..
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45666778888887777 55555554432 1 1223455999999999999999999998887775
No 379
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.15 E-value=1.3e+02 Score=22.96 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=25.9
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVV 392 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~ 392 (452)
++.-.|...||+.+|+|+.-|...+.+...
T Consensus 39 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 39 LSEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 378889999999999999999988887653
No 380
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.08 E-value=1.4e+02 Score=20.91 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.4
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMV 391 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI 391 (452)
++.-.+...||+.+|+|+.-|...+.+..
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667999999999999999988887654
No 381
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=20.80 E-value=78 Score=26.93 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=32.4
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCc
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~g 405 (452)
.++...||+.+|++..-+=..|.+|...|-|.-.-|..++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 3999999999999999999999999999999776554444
No 382
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=20.77 E-value=2.8e+02 Score=20.97 Aligned_cols=32 Identities=13% Similarity=-0.054 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy292 220 QELKLKYYRLMIELDQHEGSYLATCKHYRAIL 251 (452)
Q Consensus 220 ~~lk~~~~~~~~~~~~~~~df~ea~~~y~e~~ 251 (452)
+..+.......+.-.+..++|-+|..+|.++.
T Consensus 12 ~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 12 QSTAAATVLKRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666667777888899999999999999883
No 383
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.72 E-value=1e+02 Score=23.09 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=25.8
Q ss_pred hccceeHHHHHHHhCCChHHHHHHHHhhhh
Q psy292 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVV 392 (452)
Q Consensus 363 ~Ys~Itl~~La~ll~ls~~evE~~ls~mI~ 392 (452)
++.-.+...||+.+|+|+.-|...+.+...
T Consensus 41 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 41 IAKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HHTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367889999999999999999988887653
No 384
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=20.59 E-value=1.1e+02 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=31.0
Q ss_pred hhccceeHHHHHHHhCCChHHHHHHHHhhhhcCc
Q psy292 362 KYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKT 395 (452)
Q Consensus 362 k~Ys~Itl~~La~ll~ls~~evE~~ls~mI~~~~ 395 (452)
-+=.-.+++.||+.-|+++..++..|+.+|..|.
T Consensus 28 l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 28 QIDRKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 3447889999999999999999999999999995
No 385
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=20.50 E-value=4.6e+02 Score=23.42 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc--cC----cchH--HHHHHHHHH-HHHHhhccChHHHHHHHHHhhhhhccC-CC
Q psy292 147 LAKMKEDEGDVTEAANIIQELQVETY--GS----MEKK--EKVTLILEQ-MRLCLAKKDYIRTQIISKKINTKFFDD-EK 216 (452)
Q Consensus 147 La~i~e~~gd~~eA~~iL~~l~~Et~--~~----~~~~--~k~e~~Le~-~rl~l~~~d~~~a~~~~~K~~~~~~~~-~~ 216 (452)
|...++ .+|++.|.++|..+.++-- .. -+.. .-...++|+ +|+.++.+|............+...+. ++
T Consensus 14 L~~~~~-~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 14 LADLYD-RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHH-hccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 444454 5799999999999876531 21 1222 234455665 888999999997777666666555321 11
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhHHH
Q psy292 217 DDVQELKLKYYRLMIELDQHEGSYLA 242 (452)
Q Consensus 217 ~~~~~lk~~~~~~~~~~~~~~~df~e 242 (452)
. ..+..+..|...++...++.-+
T Consensus 93 s---~~~~e~~~~~LL~lL~~~~~~e 115 (229)
T 4b0z_A 93 S---SRMGLVTGLNLLYLLSENRIAE 115 (229)
T ss_dssp C---TTHHHHHHHHHHHHHHTTCHHH
T ss_pred C---ccHHHHHHHHHHHHHHcCCchH
Confidence 1 2255566666777777777655
No 386
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=20.47 E-value=2.3e+02 Score=25.75 Aligned_cols=60 Identities=5% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccce-eHHHHHHHhCCChHHHHHHHHhhhhcCcEEEEeccCCcEEEe
Q psy292 345 FKMLKHRVVEHNIRVMAKYYTRI-TLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINF 409 (452)
Q Consensus 345 ~~~L~~~viEhNi~~isk~Ys~I-tl~~La~ll~ls~~evE~~ls~mI~~~~l~akIDq~~giV~f 409 (452)
+..+...+.+.= .. -++=+++ +-..||+.+|+|..-|-+.+..+..+|.|.. +..|..+-
T Consensus 16 y~~i~~~l~~~I-~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~ 76 (248)
T 3f8m_A 16 HQVVRAELDRML-DG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVA 76 (248)
T ss_dssp HHHHHHHHHHHH-HH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEEC
T ss_pred HHHHHHHHHHHH-hC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEc
Confidence 344454444422 23 4556788 8999999999999999999999999998876 88887543
No 387
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=20.39 E-value=81 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=29.9
Q ss_pred ceeHHHHHHHhCCChHHHHHHHHhhhhcCcEE
Q psy292 366 RITLQRMCDLLGLPIEETEEFLSSMVVSKTIT 397 (452)
Q Consensus 366 ~Itl~~La~ll~ls~~evE~~ls~mI~~~~l~ 397 (452)
.+|-+.||+.+|++++-+-+.+.+|..+|-|.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 57889999999999999999999999999875
Done!