RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy292
(452 letters)
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 136 bits (342), Expect = 6e-36
Identities = 53/384 (13%), Positives = 134/384 (34%), Gaps = 14/384 (3%)
Query: 65 LVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVV-KMIQECVTYVDKTP-SKEIKVKL 122
++ ++ + L + I + S + +A K+++ V I+V+L
Sbjct: 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQL 81
Query: 123 IETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETYGSMEKKEKVT 182
+ + + R L L + D TEA + +L E +K V
Sbjct: 82 CKDCIEWAK-QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVE 140
Query: 183 LILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHEGSYLA 242
+ L + + A + + + T + L ++ E +
Sbjct: 141 VQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHA-ADERDFKT 199
Query: 243 TCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQSDLTHRVLEDKLLNEIPLY 302
++ ++ ++ +ML D+ ++ ++ +I
Sbjct: 200 AFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAM 259
Query: 303 KGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAK 362
K + + L + + Y++EL + + Q L ++E N+ + +
Sbjct: 260 KSVAEASHKRSLADFQAALKEYKKELAEDVIV-------QAHLGTLYDTMLEQNLCRIIE 312
Query: 363 YYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGIINFARNKDPGEILNEW 422
Y+R+ + + + + LP+ + E+ LS M++ K + +D+ G++ +
Sbjct: 313 PYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV 372
Query: 423 SASLNELMKLVNNTTHLINKEQMI 446
++ + K+V+ L K + +
Sbjct: 373 LETIQSMGKVVDT---LYQKAKKL 393
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 103 bits (258), Expect = 3e-27
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 346 KMLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAG 405
+L V+EHN+ +K Y IT + + LL +P + E+ S M+ + ID+ G
Sbjct: 10 SILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 69
Query: 406 IINFARNKDPGE 417
I++F + G
Sbjct: 70 IVHFETREASGP 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 3e-14
Identities = 56/420 (13%), Positives = 144/420 (34%), Gaps = 93/420 (22%)
Query: 85 ITMLTKRRSQLKQAVVKMIQ-------ECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVE 137
T+L+K+ +++ V ++++ + + PS ++ + + R + +++ +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 138 --VERAR----LTHILAKMKEDEGDVTE----------AANIIQELQVET-------YGS 174
V R + L L +++ + + + A ++ +V+ + +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 175 MEKKEKVTLILEQM-RLCL-AKKDYIRTQIISKKINTKF-FDDEKDDVQEL-KLKYYR-- 228
++ +LE + +L ++ T N K + +++ L K K Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 229 LMIELD-----QHEGSYLATCKHYRAILTTPCIQ-SDPIQRHAVLQNVVLYLMLAPYDNE 282
L++ L + ++ +CK +LTT Q +D + A ++ L +
Sbjct: 247 LLV-LLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPD 301
Query: 283 QS-DLTHRVLE---DKLLNEI----PLYKGLLQWFTNPELIKWSGLRQLYEEEL---FKT 331
+ L + L+ L E+ P ++ L W + + ++L ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 332 SVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYYTRITLQRMCDL-LGLPIEETEEFLSSM 390
S+ E +K F L V + I + + + + ++ +
Sbjct: 362 SLNVLEPAEYRKMFDRLS--VFPPS--------AHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 391 VVSKTITAKIDRPAGIINFARNKDPGEILNEWSASLNELMKLVNNTTHLINKEQMIHQRV 450
+ K P E + S+ + + L N+ + H+ +
Sbjct: 412 HKYSLV---------------EKQP----KESTISIPSI--YLELKVKLENEYAL-HRSI 449
Score = 29.8 bits (66), Expect = 2.3
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 98 AVVKMIQECVTY----VDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHIL--AKMK 151
+++ +Q+ Y D P E V I E + ++ T +L A M
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI----CSKYTDLLRIALMA 574
Query: 152 EDEGDVTEAANIIQ 165
EDE EA +Q
Sbjct: 575 EDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 5e-07
Identities = 57/322 (17%), Positives = 98/322 (30%), Gaps = 114/322 (35%)
Query: 171 TYGSMEKKEKVTLIL--------EQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQEL 222
++GS+E L++ Q++ K T+ + DDE EL
Sbjct: 12 SHGSLE----HVLLVPTASFFIASQLQEQFNKILPEPTEGFAA-------DDEPTTPAEL 60
Query: 223 KLKY---------------YR--LMIELDQHEGSYLATCK-HYRAILTTPCIQSDPIQRH 264
K+ + L + L + E YL H A + ++
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 265 AVLQNVVLY-----LMLAPYDN-EQSDLTHRVLEDKLLNEIPLYK---GLLQ-----WFT 310
+++N Y + P+D S L V E L G Q +F
Sbjct: 121 ELIKN---YITARIMAKRPFDKKSNSALFRAVGE----GNAQLVAIFGG--QGNTDDYF- 170
Query: 311 NPELIKWSGLRQLYE------EELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKYY 364
E LR LY+ +L K S + L ++ + K +
Sbjct: 171 -EE------LRDLYQTYHVLVGDLIKFS------------AETLS-ELIRTTLDA-EKVF 209
Query: 365 TRITLQRMCDLLG-LPIEET---EEFLSSMVVS-KTITAKIDRPAGIINFAR-------- 411
T+ ++L L +++L S+ +S I G+I A
Sbjct: 210 TQG-----LNILEWLENPSNTPDKDYLLSIPISCPLI--------GVIQLAHYVVTAKLL 256
Query: 412 NKDPGEILNEWSASLNELMKLV 433
PGE+ + + LV
Sbjct: 257 GFTPGELRSYLKGATGHSQGLV 278
Score = 49.3 bits (117), Expect = 3e-06
Identities = 28/123 (22%), Positives = 37/123 (30%), Gaps = 44/123 (35%)
Query: 38 FH-----DAIDSLLA-LEKQ---------------TRTGSDM-VSTGRILVAIV-QICFE 74
FH A D + L K T GSD+ V +G I IV I
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 75 AKNWTALNE----HI-----------TMLTKRRSQLKQAV-VKMIQECVTYVDKTPSKEI 118
W + HI +LT R K V++I +D P +
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHR---NKDGTGVRVIV--AGTLDINPDDDY 541
Query: 119 KVK 121
K
Sbjct: 542 GFK 544
Score = 36.6 bits (84), Expect = 0.019
Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 95/317 (29%)
Query: 60 STGR---ILVAIVQICFEAKNWTALNEH----ITMLTK--RRSQLKQAV------VKMIQ 104
+TG ++ A+ E +W + IT+L R +A +++
Sbjct: 270 ATGHSQGLVTAVA--IAETDSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSLPPSILE 325
Query: 105 ECVTYVDKTPS----------KEIKVKLIETLRTV--TEGKIYVEVERARLTHILAKMKE 152
+ + + PS ++++ + + ++ + + +++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLVVS---- 380
Query: 153 DEGDVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISK-KINTKF 211
G + L+ K K L+Q R+ +++ K K + +F
Sbjct: 381 --GPPQSLYGLNLTLR---------KAKAPSGLDQSRIPFSER---------KLKFSNRF 420
Query: 212 ------F--------------DDEKDDV----QELKLKYYRLMIELDQHEGSYLATCKHY 247
F D K++V +++++ Y D +GS L
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY------DTFDGSDLRVLSGS 474
Query: 248 RAILTTPCIQSDPIQRHAVLQNVVLY-LMLAP-YDNEQSDLTHRVLEDKLLNEIPLYKGL 305
+ CI P++ Q + L P + LTHR + + I G
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA--GT 532
Query: 306 LQWFTNPELIKWSGLRQ 322
L + + G +Q
Sbjct: 533 LDINPDDDY----GFKQ 545
Score = 35.8 bits (82), Expect = 0.032
Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 60/174 (34%)
Query: 65 LVAI--VQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECVTYVDKTPSKEI---K 119
L ++ V + E+ + + R Q V P E+
Sbjct: 1770 LASLADV-MSIES----LVE-----VVFYRGMTMQVAV-------------PRDELGRSN 1806
Query: 120 VKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANI-IQELQVETYGSMEKK 178
+I + G++ + L +++ ++ + G + E N ++ Q G +
Sbjct: 1807 YGMI----AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 179 EKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIE 232
+ VT +L ++L +KI D+ EL+ L +E
Sbjct: 1863 DTVTNVLNFIKL--------------QKI----------DIIELQKS---LSLE 1889
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.006
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 11 IVKMEVD---YAPTCDEKIPA-AIKMAAE 35
+ K++ YA + PA AIK E
Sbjct: 22 LKKLQASLKLYAD---DSAPALAIKATME 47
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 33.3 bits (76), Expect = 0.086
Identities = 21/198 (10%), Positives = 61/198 (30%), Gaps = 31/198 (15%)
Query: 225 KYYRLMIELDQHEGSYLATCKHYRAILTTPCIQSDPIQRHAVLQNVVLYLMLAPYDNEQS 284
KYY + + + ++ L+ + + +++YL+
Sbjct: 17 KYYVGRKAMFDSD--FKQAEEY----LSF-AFEHCHRSSQKNKRMILIYLLPVKM----- 64
Query: 285 DLTHRVLEDKLLNEIPL--YKGLLQWFTNPELIKWSGLRQLYEEELFKTSVFNQSTEEGQ 342
L + +LL + L + + + + L+ +E + +F
Sbjct: 65 -LLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFL------- 116
Query: 343 KCFKMLKHRVVEHNIRVMAKYY--TRITLQRMCDLLGL------PIEETEEFLSSMVVSK 394
+ LK + + + +++L L I+E + L++++
Sbjct: 117 -ILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMG 175
Query: 395 TITAKIDRPAGIINFARN 412
+ I + ++
Sbjct: 176 HVKGYISHQHQKLVVSKQ 193
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 30.4 bits (68), Expect = 1.1
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 96 KQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEG 155
+QA++K Q+ ++ V +T K + L + + +G+ + E R+ ++ K K +G
Sbjct: 146 RQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDG 205
Query: 156 ---DVTEAANIIQELQVETYGSMEKKEKV 181
++ ++ NI+ Q + E +
Sbjct: 206 KKEELQKSLNILTAFQKKGAEKEELGSRS 234
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein
complex, beta-grAsp fold, amino-acid biosynthesis; HET:
PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Length = 93
Score = 27.0 bits (60), Expect = 3.7
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 118 IKVKLIETLRTVTEGKIYVEVERARLTHILAKMKED 153
+ V + LR T G+ V L +++ ++ +
Sbjct: 3 VTVSIPTILRPHTGGQKSVSASGDTLGAVISDLEAN 38
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 28.1 bits (62), Expect = 5.1
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 93 SQLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILA-KMK 151
++ + + K+ + D + + LI + G ++E E RL + A K+
Sbjct: 157 AEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVT 216
Query: 152 EDEGD-VTEAANIIQELQVE 170
E + + + NI++ +V
Sbjct: 217 EAKKEELLRKLNILEVFRVH 236
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 27.9 bits (61), Expect = 6.5
Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 119 KVKLIETLRTVTEGKIYVEVERARLTHILAKMKEDEGDVTEAANIIQELQVETY-GSMEK 177
KV+ LRT+ E +M+ D + +Q +++ GS
Sbjct: 116 KVRSYSRLRTLEES---------------MEMRTDPQYYEKKMIQLQLNFIKSVEGSFNS 160
Query: 178 KEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDEKDDVQELKLKYYRLMIELDQHE 237
+ ++E+++ + D+ + +I+ + FD E + V+ ++ Y+++ L+Q+
Sbjct: 161 FDAADELIEELK-KIPPDDFYELFLRISEISFEEFDSEGNTVENVEGNVYKILSYLEQYR 219
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix
bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Length = 196
Score = 27.6 bits (61), Expect = 6.8
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 320 LRQLYEEELFKTSVFNQSTEEGQKCFKMLKHRVVEHNIRVMAKY-YTRI 367
++ LYE+ + +H + N R Y Y R+
Sbjct: 36 MKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRL 84
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 27.6 bits (62), Expect = 8.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 372 MCDLLGLPIEETEEF--LSSMVVSKTITAKIDRPAGIINF---------ARNKDPGE 417
+C+LLG+ + EF SS ++ R R +PG+
Sbjct: 153 ICELLGVDEKYRGEFGRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEPGD 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.376
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,811,017
Number of extensions: 413915
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 38
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)