RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy292
         (452 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 87.9 bits (218), Expect = 4e-22
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 347 MLKHRVVEHNIRVMAKYYTRITLQRMCDLLGLPIEETEEFLSSMVVSKTITAKIDRPAGI 406
           +L   V+EHN+   +K Y  IT + +  LL +P  + E+  S M+    +   ID+  GI
Sbjct: 11  ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70

Query: 407 INFARNKD 414
           ++F   + 
Sbjct: 71  VHFETREA 78


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 29.7 bits (66), Expect = 0.44
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 156 DVTEAANIIQELQVETYGSMEKKEKVTLILEQMRLCLAKKDYIRTQIISKKINTKFFDDE 215
           D+T    +I+ L +  Y      +  T+ + + +LC    +  + Q ++ +         
Sbjct: 35  DITR--YLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 92

Query: 216 KDDVQELKLKYYRLMIELDQHEGSYLATCKHYRAILTTPCI-QSDPIQRHAVLQNVVL 272
             D + +K+   R        +   +       A L    I  +D   R    +++VL
Sbjct: 93  LPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVL 150


>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit
           fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 106

 Score = 27.5 bits (61), Expect = 1.3
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 94  QLKQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILA-KMKE 152
           +  + + K+  +     D    +  +  LI   +    G  ++E E  RL  + A K+ E
Sbjct: 22  EQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTE 81

Query: 153 DEGD-VTEAANIIQELQVE 170
            + + +    NI++  +V 
Sbjct: 82  AKKEELLRKLNILEVFRVH 100


>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,
           C-terminal domain {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 106

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 96  KQAVVKMIQECVTYVDKTPSKEIKVKLIETLRTVTEGKIYVEVERARLTHILA-KMKEDE 154
           +QA++K  Q+ ++ V +T  K     L    + + +G+ +   E AR++ ++  KM E +
Sbjct: 23  RQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGEDFPASELARISKLIENKMSEGK 82

Query: 155 GD-VTEAANIIQELQVET 171
            + +  + NI+   + + 
Sbjct: 83  KEELQRSLNILTAFRKKG 100


>d1c16a2 d.19.1.1 (A:1-180) Class I MHC homolog {Mouse (Mus
           musculus), t22 [TaxId: 10090]}
          Length = 164

 Score = 26.2 bits (57), Expect = 5.9
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 51  QTRTGSDMVSTGRILVAIVQICFEAKNWTALNEHITMLTKRRSQLKQAVVKMIQECV 107
           Q   G D+     + +   Q+ +++++   LNE+ +  T   S +      +   C 
Sbjct: 93  QWLQGCDVEPDRHLCLWYNQLAYDSEDLPTLNENPSSCTVGNSTVPHISQDLKSHCS 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,638,516
Number of extensions: 77623
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 18
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)