BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2920
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 74/87 (85%)
Query: 238 RRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKK 297
RRVTRAVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NPW+TV+ NG VRVKK
Sbjct: 2 RRVTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKK 61
Query: 298 RWDFEELGPEKTIDFWVTINNQATNGG 324
+WD+EELGPEKTIDFWV I N N G
Sbjct: 62 KWDYEELGPEKTIDFWVIITNMGHNAG 88
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 28/189 (14%)
Query: 28 VRYSI-TQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ---YSLVITA 83
+RY++ QG TF + PT SG++ + + ++D E++ Q YSL++TA
Sbjct: 251 IRYTLKAQGQGAGTFNI-GPT-----------SGIVKL-AKELDFEDLRQPHVYSLIVTA 297
Query: 84 TDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVS 143
T+ G +T+ V D NDN+P F Y+ D L +++ K ++ S S
Sbjct: 298 TEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVK---AMDSDS 354
Query: 144 ATDADGDKVAY--KLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYA 201
++A+ + + AV SN +++ +L D +++ YE V A D P +
Sbjct: 355 GSNAEIEYLVSDDHFAVDSNGIIV--NNKQL----DADNNNAYYEFIVTAKDKGEPPKSG 408
Query: 202 REPAQVWLQ 210
+V+ +
Sbjct: 409 VATVRVYTK 417
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 69/82 (84%)
Query: 243 AVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFE 302
AVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NPW+TV+ NG VRVKK+WD+E
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 303 ELGPEKTIDFWVTINNQATNGG 324
ELGPEKTIDFWV I N N G
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAG 83
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 17/84 (20%)
Query: 28 VRYSI-TQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ---YSLVITA 83
+RY++ QG TF + PT SG++ + + ++D E++ Q YSL++TA
Sbjct: 246 IRYTLKAQGQGAGTFNI-GPT-----------SGIVKL-AKELDFEDLRQPHVYSLIVTA 292
Query: 84 TDVKGINKAETHVTVDVLDENDNS 107
T+ G +T+ V D NDN+
Sbjct: 293 TEDSGGFSTSVDLTIRVTDVNDNA 316
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 114/264 (43%), Gaps = 60/264 (22%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S+K V YSIT QG DN P R E ++G +LVT +DREE +Y
Sbjct: 32 SNKDRFNKVYYSITGQGADN-------PPQGVFR--IEWETGWMLVTR-PLDREEYDKYV 81
Query: 79 LVITATDVKGINKAE-THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G E +T++V+D+NDN P F+Q V+R G ++ + +
Sbjct: 82 LSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR---GSVREGVQPG-------T 131
Query: 138 SIGSVSATDADGD------KVAYKL-------AVPSNLVVIVPQTG--ELLLTGDPPSDD 182
+ +VSATD D + ++Y + +P NL I +TG L+ TG
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP-NLFTINRETGVISLIGTGLDREKF 190
Query: 183 VEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTR 242
EY LTV+A DL+ ++ + ++Q+ D AP I +
Sbjct: 191 PEYTLTVQATDLEGAGLS---------------VEGKAIIQITDANDNAP--IFDPKTYT 233
Query: 243 AVRPTKRIDF-----SETDGEMEG 261
A+ P I F S TD +M G
Sbjct: 234 ALVPENEIGFEVQRLSVTDLDMPG 257
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 55 TESKSGVLLVTSGDIDRE----EVAQYSLVITATDVK-GINKAETHVTVDVLDENDNSPV 109
T +K ++ +G++DRE + Y++++ TD + + + VLD NDN PV
Sbjct: 386 TVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 445
Query: 110 FSQKVYRFI 118
S +V+
Sbjct: 446 PSPRVFTMC 454
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 114/264 (43%), Gaps = 60/264 (22%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S+K V YSIT QG DN P R E ++G +LVT +DREE +Y
Sbjct: 181 SNKDRFNKVYYSITGQGADN-------PPQGVFR--IEWETGWMLVTR-PLDREEYDKYV 230
Query: 79 LVITATDVKGINKAE-THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G E +T++V+D+NDN P F+Q V+R G ++ + +
Sbjct: 231 LSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR---GSVREGVQPG-------T 280
Query: 138 SIGSVSATDADGD------KVAYKL-------AVPSNLVVIVPQTG--ELLLTGDPPSDD 182
+ +VSATD D + ++Y + +P NL I +TG L+ TG
Sbjct: 281 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP-NLFTINRETGVISLIGTGLDREKF 339
Query: 183 VEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTR 242
EY LTV+A DL+ ++ + ++Q+ D AP I +
Sbjct: 340 PEYTLTVQATDLEGAGL---------------SVEGKAIIQITDANDNAP--IFDPKTYT 382
Query: 243 AVRPTKRIDF-----SETDGEMEG 261
A+ P I F S TD +M G
Sbjct: 383 ALVPENEIGFEVQRLSVTDLDMPG 406
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 55 TESKSGVLLVTSGDIDRE----EVAQYSLVITATDVK-GINKAETHVTVDVLDENDNSPV 109
T +K ++ +G++DRE + Y++++ TD + + + VLD NDN PV
Sbjct: 535 TVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 594
Query: 110 FSQKVY 115
S +V+
Sbjct: 595 PSPRVF 600
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 38/193 (19%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S+K V YSIT QG D + E ++G L VT +DRE +A Y+
Sbjct: 26 SNKDKEGKVFYSITGQGADTPPVGVF---------IIERETGWLKVTE-PLDRERIATYT 75
Query: 79 LVITATDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKF 136
L A G N E + + V D+NDN P F+Q+V++ V ++ +L
Sbjct: 76 LFSHAVSSNG-NAVEDPMEILITVTDQNDNKPEFTQEVFKGSV--MEGALPG-------- 124
Query: 137 SSIGSVSATDADGDKVAYKLAVP------------SNLVVIVPQTG--ELLLTGDPPSDD 182
+S+ V+ATDAD D Y A+ N+ I TG ++ TG
Sbjct: 125 TSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESF 184
Query: 183 VEYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 185 PTYTLVVQAADLQ 197
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVVTTGLDRESFPTYTLVVQAADLQG 198
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E SK GT V + + A + ++RY I + +P I N T G
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRILS----QAPSTPSPNMFTINNET----GD 170
Query: 62 LLVTSGDIDREEVAQYSLVITATDVK-----GINKAETHVTVDVLDENDNSPVFSQKVY 115
++ + +DRE+V QY+L+I ATD++ G++ T V + V D NDN P F+ +
Sbjct: 171 IITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAV-ITVTDVNDNPPEFTAMTF 228
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 37/190 (19%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYS+T A + PT I N SG L VT +DRE +A++ L A D+
Sbjct: 34 LRYSVTGPG-----ADQPPTGIFIINPI---SGQLSVTK-PLDRELIARFHLRAHAVDIN 84
Query: 88 GINKAET--HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS-IGSVSA 144
G N+ E + ++V+D NDN P F +V+ N +V K + + +V+A
Sbjct: 85 G-NQVENPIDIVINVIDMNDNRPEFLHQVW-----------NGSVPEGSKPGTYVMTVTA 132
Query: 145 TDAD-----GDKVAYKL-----AVPS-NLVVIVPQTGELL--LTGDPPSDDVEYELTVEA 191
DAD + Y++ + PS N+ I +TG+++ G +Y L ++A
Sbjct: 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQA 192
Query: 192 HDLQSPSRYA 201
D++ Y
Sbjct: 193 TDMEGNPTYG 202
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 52/213 (24%)
Query: 14 PILVASSHK--HPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVT--SGDI 69
PIL+ + + P + + ++G + F L + + G+ + SGD+
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSG------KGVDQDPKGIFRINEISGDV 59
Query: 70 ------DREEVAQYSLVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDL 122
DRE +A Y L + TD+ G I + + V+D+NDN P+F + Y
Sbjct: 60 SVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPY------- 112
Query: 123 KSSLNSNVSHWKKFSSIGS----VSATDADG---DKVAYKLAV-------PS-NLVVIVP 167
V H + S G+ ++A DAD D + + PS N+ I P
Sbjct: 113 -------VGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDP 165
Query: 168 QTGELLLTGDPPSDDVE------YELTVEAHDL 194
+ G+++ P D E YEL +EA D+
Sbjct: 166 EKGDIVTVVSPVLLDRETMETPKYELVIEAKDM 198
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
ME S +GT V + A + L+RY+I + P+ + E
Sbjct: 117 MEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTK------PSPNMFYIDPEKGDI 170
Query: 61 VLLVTSGDIDRE--EVAQYSLVITATDVKG 88
V +V+ +DRE E +Y LVI A D+ G
Sbjct: 171 VTVVSPVLLDRETMETPKYELVIEAKDMGG 200
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 83/192 (43%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKGINKAE-THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G A+ + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKV 114
E ++G L VT +DRE +A+Y L A G + + + V D+NDN P F+Q+V
Sbjct: 54 ERETGWLKVTQP-LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV 112
Query: 115 YRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------ 168
+ V + +S+ VSATDAD D Y A+ +V P+
Sbjct: 113 FEGSVAEGAV----------PGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 169 ------TG--ELLLTGDPPSDDVEYELTVEAHDLQ 195
TG +L +G Y L V+A DLQ
Sbjct: 163 FTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQ 197
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYR 116
+GV+ V + +DRE Y+LV+ A D++G + T + V D NDN+PVF+ Y+
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQ 227
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 28 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 77
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 78 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 127
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 128 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 187
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 188 TYTLVVQAADLQ 199
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFS 111
+GV+ V + +DRE Y+LV+ A D++G + T + V D NDN+PVF+
Sbjct: 171 TGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN 224
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 27 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 76
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 77 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 126
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 127 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 186
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 187 TYTLVVQAADLQ 198
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNS 107
+GV+ V + +DRE Y+LV+ A D++G + T + V D NDN+
Sbjct: 170 TGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNA 219
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 28 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 77
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 78 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 127
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 128 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 187
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 188 TYTLVVQAADLQ 199
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 171 TGVISVLTSGLDRESYPTYTLVVQAADLQG 200
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 25 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 74
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 75 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 124
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 125 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 184
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 185 TYTLVVQAADLQ 196
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 168 TGVISVLTSGLDRESYPTYTLVVQAADLQG 197
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 36/148 (24%)
Query: 69 IDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLN 127
+DRE +A Y L + TD G + + V V+D+NDN P+F + Y
Sbjct: 66 LDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPY------------ 113
Query: 128 SNVSHWKKFSSIGS----VSATDADG---DKVAYKLAV-------PS-NLVVIVPQTGEL 172
+ H + S G+ ++A DAD D + + PS N+ I P+ G++
Sbjct: 114 --IGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDI 171
Query: 173 LLTGDPPSDDVE------YELTVEAHDL 194
+ P D E YEL +EA D+
Sbjct: 172 VTVVSPALLDRETLENPKYELIIEAQDM 199
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
ME S +GT V + A + L+RY+I Q + P+ + E
Sbjct: 118 MEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDK------PSPNMFYIDPEKGDI 171
Query: 61 VLLVTSGDIDRE--EVAQYSLVITATDVKGINKAET 94
V +V+ +DRE E +Y L+I A D+ G++ T
Sbjct: 172 VTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLT 207
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TG--ELLLTGDPPSDDV 183
S+ VSATDAD D Y A+ +V P+ TG +L +G
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 184 EYELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 186 TYTLVVQAADLQ 197
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQG 198
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 84/194 (43%), Gaps = 40/194 (20%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 26 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 75
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 76 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE----------GAVPGT 125
Query: 138 SIGSVSATDADGDKVAYKLAVPSNLVVIVPQ------------TGELLLTGDPPSDDVE- 184
S+ VSATDAD D Y A+ +V P+ TG +++ D D E
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG--VISVDTSGLDRES 183
Query: 185 ---YELTVEAHDLQ 195
Y L V+A DLQ
Sbjct: 184 YPTYTLVVQAADLQ 197
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+GV+ V + +DRE Y+LV+ A D++G
Sbjct: 169 TGVISVDTSGLDRESYPTYTLVVQAADLQG 198
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E SK GT V + + A + ++RY I + + +P I N T G
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRIV----SQAPSTPSPNMFTINNET----GD 170
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKG 88
++ + +DRE+V QY+L+I ATD++G
Sbjct: 171 IITVAAGLDREKVQQYTLIIQATDMEG 197
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 37/190 (19%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYS+T A + PT I N SG L VT +DRE +A++ L A D+
Sbjct: 34 LRYSVTGPG-----ADQPPTGIFIINPI---SGQLSVTK-PLDRELIARFHLRAHAVDIN 84
Query: 88 GINKAET--HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS-IGSVSA 144
G N+ E + ++V+D NDN P F +V+ N +V K + + +V+A
Sbjct: 85 G-NQVENPIDIVINVIDMNDNRPEFLHQVW-----------NGSVPEGSKPGTYVMTVTA 132
Query: 145 TDAD-----GDKVAYKL-----AVPS-NLVVIVPQTGELL--LTGDPPSDDVEYELTVEA 191
DAD + Y++ + PS N+ I +TG+++ G +Y L ++A
Sbjct: 133 IDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQA 192
Query: 192 HDLQSPSRYA 201
D++ Y
Sbjct: 193 TDMEGNPTYG 202
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E SK GT V + + A + ++RY I + + +P I N T G
Sbjct: 119 EGSKPGTYVMTVTAIDADDPNALNGMLRYRIL----SQAPSTPSPNMFTINNET----GD 170
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKG 88
++ + +DRE+V QY+L+I ATD++G
Sbjct: 171 IITVAAGLDREKVQQYTLIIQATDMEG 197
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 37/190 (19%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYS+T A + PT I N SG L VT +DRE +A++ L A D+
Sbjct: 34 LRYSVTGPG-----ADQPPTGIFIINPI---SGQLSVTK-PLDRELIARFHLRAHAVDIN 84
Query: 88 GINKAET--HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS-IGSVSA 144
G N+ E + ++V+D NDN P F +V+ N +V K + + +V+A
Sbjct: 85 G-NQVENPIDIVINVIDMNDNRPEFLHQVW-----------NGSVPEGSKPGTYVMTVTA 132
Query: 145 TDAD-----GDKVAYKL-----AVPS-NLVVIVPQTGELL--LTGDPPSDDVEYELTVEA 191
DAD + Y++ + PS N+ I +TG+++ G +Y L ++A
Sbjct: 133 IDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQA 192
Query: 192 HDLQSPSRYA 201
D++ Y
Sbjct: 193 TDMEGNPTYG 202
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 20 SHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYS 78
S++ V YSIT QG D K P I E ++G L VT +DRE +A+Y
Sbjct: 28 SNRDKETKVFYSITGQGAD------KPPVGVFI---IERETGWLKVTQ-PLDREAIAKYI 77
Query: 79 LVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
L A G + + + V D+NDN P F+Q+V+ V + +
Sbjct: 78 LYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP----------GT 127
Query: 138 SIGSVSATDADGDKVAY 154
S+ VSATDAD D Y
Sbjct: 128 SVMKVSATDADDDVNTY 144
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 32/192 (16%)
Query: 14 PILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREE 73
P+LV H I G+ N + L I + KSG + T +DREE
Sbjct: 19 PVLVGRLHS--------DIDSGDGNIKYILSGEGAGTIF-VIDDKSGNIHATK-TLDREE 68
Query: 74 VAQYSLVITATDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVS 131
AQY+L+ A D E + V V D NDN P F ++Y V + SNV
Sbjct: 69 RAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPE-----RSNVG 123
Query: 132 HWKKFSSIGSVSATDAD------GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSD---D 182
+S+ V+A+DAD K+ Y + + QTG ++ T P D
Sbjct: 124 -----TSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTG-IIRTALPNMDREAK 177
Query: 183 VEYELTVEAHDL 194
EY + ++A D+
Sbjct: 178 EEYHVVIQAKDM 189
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKG 88
S E+++G++ ++DRE +Y +VI A D+ G
Sbjct: 157 SVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGG 191
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
PH + + + + GN N + ++ + + I + +DRE+ A+Y L
Sbjct: 18 PHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFER--LDREKKAEYELTAHI 75
Query: 84 TDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKF-SSIG 140
D + E + + V D NDN+P+F QK++ N +V + +S+
Sbjct: 76 IDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIF-----------NGSVPEMSRLGTSVT 124
Query: 141 SVSATDADGDKVAYKLAVPSNLV 163
V+A DAD VA V ++
Sbjct: 125 KVTAEDADDPTVAGHATVTYQII 147
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 25 HQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITAT 84
H V Y I +GN+ T SGV+ D+DRE + Y +++ A
Sbjct: 139 HATVTYQIIKGNEYFTV---------------DDSGVIFTARADLDRESQSAYEIIVKAK 183
Query: 85 DVKGINKAETHVTV 98
D G+ + TV
Sbjct: 184 DALGLTGESSTATV 197
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
Query: 69 IDREEVAQYSLVITATDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+DREE A+Y+L A D + E + + V D NDN+P F Y V ++ S L
Sbjct: 63 LDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEM-SIL 121
Query: 127 NSNVSHWKKFSSIGSVSATDAD------GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPS 180
++V++ V+ATDAD K+ Y + I P+T ++ T P
Sbjct: 122 GTSVTN---------VTATDADDPVYGNSAKLVYSILEGQPYFSIEPETA-IIKTALPNM 171
Query: 181 D---DVEYELTVEAHDL 194
D EY + ++A D+
Sbjct: 172 DREAKEEYLVVIQAKDM 188
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN---KAETHVTVDVLDENDNSPVF 110
S E ++ ++ ++DRE +Y +VI A D+ G + T +TV + D NDN P F
Sbjct: 156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Query: 111 SQKVYRFIV 119
+Q +Y F V
Sbjct: 216 AQSLYHFSV 224
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQ 112
+G L VTS +DREE + L A D +G N + + + VLD NDN PVF+Q
Sbjct: 69 TGELNVTS-ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYS+T A + PT I N SG L VT +DRE +A++ L A D+
Sbjct: 36 LRYSVTGPG-----ADQPPTGIFIINPI---SGQLSVTK-PLDRELIARFHLRAHAVDIN 86
Query: 88 GINKAET--HVTVDVLDENDNSPVF 110
G N+ E + ++V+D NDN P F
Sbjct: 87 G-NQVENPIDIVINVIDMNDNRPEF 110
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 69 IDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSP 108
+DRE +A Y L + TDV G + + V V+D+NDN P
Sbjct: 65 LDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNS 128
+DRE +++++ + +D +G+ V + V D NDN+P F + Y ++ N+
Sbjct: 71 LDRETKSEFTVEFSVSDHQGV--ITRKVNIQVGDVNDNAPTFHNQPYS-----VRIPENT 123
Query: 129 NVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVE- 184
V + I V+ATD D G V Y PS I G + + + + +
Sbjct: 124 PVG-----TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQA 178
Query: 185 YELTVEAHD 193
Y+LTV A D
Sbjct: 179 YQLTVNATD 187
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNS 128
+DRE +++++ + +D +G+ V + V D NDN+P F + Y ++ N+
Sbjct: 71 LDRETKSEFTVEFSVSDHQGV--ITRKVNIQVGDVNDNAPTFHNQPYS-----VRIPENT 123
Query: 129 NVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVE- 184
V + I V+ATD D G V Y PS I G + + + + +
Sbjct: 124 PVG-----TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQA 178
Query: 185 YELTVEAHD 193
Y+LTV A D
Sbjct: 179 YQLTVNATD 187
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNS 128
+DRE +++++ + +D +G+ V + V D NDN+P F + Y ++ N+
Sbjct: 70 LDRETKSEFTVEFSVSDHQGV--ITRKVNIQVGDVNDNAPTFHNQPYS-----VRIPENT 122
Query: 129 NVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVE- 184
V + I V+ATD D G V Y PS I G + + + + +
Sbjct: 123 PVG-----TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQA 177
Query: 185 YELTVEAHD 193
Y+LTV A D
Sbjct: 178 YQLTVNATD 186
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 22/137 (16%)
Query: 69 IDREEVAQYSLVITATDVKGIN--KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+DREE Y L A + + + E+ + + D NDN P+F++ VY V ++
Sbjct: 63 LDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEM---- 118
Query: 127 NSNVSHWKKFSSIGSVSATDAD------GDKVAYKLAVPSNLVVIVPQTGEL---LLTGD 177
++V + + V+ATDAD KV Y + + +TG + LL D
Sbjct: 119 -ADVGTF-----VVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMD 172
Query: 178 PPSDDVEYELTVEAHDL 194
+ + +Y++ ++A D+
Sbjct: 173 RENRE-QYQVVIQAKDM 188
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKG 88
S ES++G++ ++DRE QY +VI A D+ G
Sbjct: 156 SVESETGIIKTALLNMDRENREQYQVVIQAKDMGG 190
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 38 NHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVT 97
N+T+ALK PT+ +I + + K G + ++ E A+ ++ V+G + VT
Sbjct: 278 NNTYALKRPTSRKIYSEVQKKFGTFPFSLRQLEDERDAKSGVIEC---VRGGVFRQYEVT 334
Query: 98 VDVLDENDNSPV 109
D DN+PV
Sbjct: 335 GD----KDNAPV 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,129,601
Number of Sequences: 62578
Number of extensions: 431843
Number of successful extensions: 789
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 69
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)