BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2920
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15943|CADN_DROME Neural-cadherin OS=Drosophila melanogaster GN=CadN PE=1 SV=2
Length = 3097
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/341 (49%), Positives = 232/341 (68%), Gaps = 21/341 (6%)
Query: 2 ENSKSGTGVKGLPILVASSHK------HPHQLVRYSITQGNDNHTFALKNPTTHE-IRNS 54
EN +GT V+G+P++ A S + VRY+I GN + FAL+ ++ I+ S
Sbjct: 183 ENQPAGTRVRGVPLMQAFSGSILDEELATPKKVRYTIIDGNVDDAFALQERKANKNIQIS 242
Query: 55 TES-------KSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNS 107
+S +SGV LVT+ +DREE A Y L + A+DV G+++ + + + VLDENDN
Sbjct: 243 AKSLVINGDDESGVWLVTNRPLDREERAHYDLSVEASDVDGLDRTVSKIQITVLDENDNR 302
Query: 108 PVFSQKVYRF-IVGDLKSSLNSNVS-HWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVI 165
P+F Y+F I G +S+ SN S +++F+ +G V ATDADGDK+AY+L PSN+V+I
Sbjct: 303 PIFKSLDYKFAIAGQKSASMESNSSVTYQRFAIMGKVEATDADGDKIAYRLKSPSNVVII 362
Query: 166 VPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNS--PVLQDEQLLQ 223
VPQTGE++L G+P S+++ E V AHDL+ PS + +PA+V L+F + PV Q L+
Sbjct: 363 VPQTGEIMLAGEPTSNELLIE--VIAHDLRYPSLVSAKPAKVLLEFLAAEPVSFIMQHLE 420
Query: 224 MIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENP 283
D + + HR EKRRVTRAVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NP
Sbjct: 421 HDDINNHSHHR-EKRRVTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP 479
Query: 284 WITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGG 324
W+TV+ NG VRVKK+WD+EELGPEKTIDFWV I N N G
Sbjct: 480 WVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAG 520
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RY IT GN FA+KN T G + V +G +D E +Y L + A+D
Sbjct: 1447 IRYEITSGNIGGAFAVKNMT------------GAIYV-AGALDYETRRRYELRLAASD-- 1491
Query: 88 GINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
+ + T V + V D NDN PVF + YR + + N+ + V+ATD
Sbjct: 1492 NLKENYTTVIIHVKDVNDNPPVFERPTYR---TQITEEDDRNLP-----KRVLQVTATDG 1543
Query: 148 DGDKVAYKLAVPSNLVVIVPQTG 170
D D+ P N+V + G
Sbjct: 1544 DKDR-------PQNIVYFLTGQG 1559
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 28/187 (14%)
Query: 28 VRYSI-TQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ---YSLVITA 83
+RY++ QG TF + PT SG++ + ++D E++ Q YSL++TA
Sbjct: 683 IRYTLKAQGQGAGTFNI-GPT-----------SGIVKLAK-ELDFEDLRQPHVYSLIVTA 729
Query: 84 TDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVS 143
T+ G +T+ V D NDN+P F Y+ D L +++ K ++ S S
Sbjct: 730 TEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVK---AMDSDS 786
Query: 144 ATDADGDKVAY--KLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYA 201
++A+ + + AV SN +++ +L D +++ YE V A D P +
Sbjct: 787 GSNAEIEYLVSDDHFAVDSNGIIV--NNKQL----DADNNNAYYEFIVTAKDKGEPPKSG 840
Query: 202 REPAQVW 208
+V+
Sbjct: 841 VATVRVY 847
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 39/174 (22%)
Query: 78 SLVITATD-----VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSH 132
S+ + ATD ++G+ TV++ D NDN P+F ++ Y V +
Sbjct: 1045 SVTVKATDQGDPSLEGV----CSFTVEITDVNDNPPLFDRQKY--------------VEN 1086
Query: 133 WKKFSSIGS----VSATDADGDK---VAYKLAVPSN-----LVVIVPQTGELLLTGDPPS 180
K+ +SIG+ VSA+D D D + Y L P N I ++G ++L P
Sbjct: 1087 VKQDASIGTNILRVSASDEDADNNGAIVYSLTAPFNPNDLEYFEIQAESGWIVLK--KPL 1144
Query: 181 DDVEYELTVEAHDLQSP--SRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAP 232
D Y+L A D P SR V + N+P + D + I K P
Sbjct: 1145 DRETYKLEAMAQDKGYPPLSRTVEVQIDVVDRANNPPVWDHTVYGPIYVKENMP 1198
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 75 AQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNVSH 132
A Y ++TA D KG TV V ++ND P FSQ+VY V D + N+ V+
Sbjct: 822 AYYEFIVTAKD-KGEPPKSGVATVRVYTKNKNDEEPKFSQQVYTPNV-DENAGPNTLVT- 878
Query: 133 WKKFSSIGSVSATDADGDKVAYKL---AVPSNLVVIVPQTGELLLTGDPPS-DDVEYELT 188
+V A+D DGD V + S VI TG + L S D +YEL
Sbjct: 879 --------TVVASDKDGDNVRFGFVGGGTSSGQFVIEDITGVIRLHNKAISLDKDKYELN 930
Query: 189 VEAHD 193
V A D
Sbjct: 931 VTAMD 935
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 63 LVTSGDIDREEVAQYSLVITATD--------VKGINKAETHVTVDVLDENDNSPVFSQKV 114
+ T DRE+ Y+L + A D G N + + + D+NDN P F + +
Sbjct: 1359 IFTKTVFDREKKGAYALEVEARDGAPSARPNSNGPNSVTKFIRIGIADKNDNPPYFDKSL 1418
Query: 115 YRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPS--NLVVIVPQTGE 171
Y V + N ++ H ++ +V+A D D ++ Y++ + + TG
Sbjct: 1419 YEAEVDE-----NEDIQH-----TVLTVTAKDHDESSRIRYEITSGNIGGAFAVKNMTGA 1468
Query: 172 LLLTGDPPSDDVE----YELTVEAHD 193
+ + G + D E YEL + A D
Sbjct: 1469 IYVAG---ALDYETRRRYELRLAASD 1491
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2
Length = 4349
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 29/223 (13%)
Query: 12 GLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDR 71
G PIL+ S+ P + V Y + +GN + F++ S SG L+ T +D
Sbjct: 1676 GSPILLVSAMS-PSE-VTYELREGNKDGVFSMN------------SYSG-LISTQKKLDH 1720
Query: 72 EEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVS 131
E+++ Y L I +++ G + V VD++DENDN+P+F + + VG + +
Sbjct: 1721 EKISSYQLKIRGSNMAGA-FTDVMVVVDIIDENDNAPMFLKSTF---VGQISEAAPLYSM 1776
Query: 132 HWKKFSSIGSVSATDADGDK---VAYKLAVPSNL--VVIVPQTGELLLTGDPPSDDV-EY 185
K ++ + A+D+D + + YK+ P L I P G L + + + + +
Sbjct: 1777 IMDKNNNPFVIHASDSDKEANSLLVYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSF 1836
Query: 186 ELTVEAHDLQSPSRYAREPAQVWLQF----NSPVLQDEQLLQM 224
+ V HD SP +A PAQV + +SP EQ+ ++
Sbjct: 1837 QFCVYVHDQGSPVLFAPRPAQVIIHVRDVNDSPPRFSEQIYEV 1879
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 79/178 (44%), Gaps = 32/178 (17%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
+ENS+ G V L L A + Q+ Y IT+G+ F + E R S+
Sbjct: 2916 VENSEPGELVATLKTLDADISEQNRQVTCY-ITEGDPLGQFGISQ-VGDEWRISSRKT-- 2971
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+DRE A+Y L +TA+D G +A V + VLD NDNSP SQ +Y V
Sbjct: 2972 --------LDREHTAKYLLRVTASD--GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKV- 3020
Query: 121 DLKSSLNSNVSHWKKFSS--IGSVSATDADGD---KVAYKLAVP-SNLVVIVPQTGEL 172
H F I VSATD D D ++ Y L P ++ + P TGEL
Sbjct: 3021 -----------HEDVFPGHFILKVSATDLDTDTNAQITYSLHGPGAHEFKLDPHTGEL 3067
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 28/162 (17%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHE---IRNSTESKSGVLLVTSGDIDREEVAQYSLV 80
P VRY I G+ + F + +R T+S + LL +RE Y+L+
Sbjct: 65 PQWAVRYRIISGDVANVFKTEEYVVGNFCFLRIRTKSSNTALL------NREVRDSYTLI 118
Query: 81 ITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGD---LKSSLNSNVSHWKKFS 137
I AT+ +A T V V +LD+ND P+FS YR + + LK S
Sbjct: 119 IQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPLK-------------S 165
Query: 138 SIGSVSATDADGDKVA---YKLAVPSNLVVIVPQTGELLLTG 176
I V+ATDAD + A Y S + I P +G + + G
Sbjct: 166 PICKVTATDADLGQNAEFYYAFNTRSEMFAIHPTSGVVTVAG 207
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
Y I GN+ F + E ++G LL + +D E Y L +T D+
Sbjct: 752 YVIADGNEEGCFDI------------ELETG-LLTVAAPLDYEATNFYILNVTVYDLGTP 798
Query: 90 NKAE-THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD 148
K+ +TV+V D NDN+P F Y+ + + ++ V ++I ++ DAD
Sbjct: 799 QKSSWKLLTVNVKDWNDNAPRFPPGGYQLTISE-----DTEVG-----TTIAELTTKDAD 848
Query: 149 GD---KVAYKLAVPSNLVVIVPQTGELLLTGDPPSD-DVEYELTVEAHD 193
+ +V Y L P+ + P TGEL++TG + + Y L VEA D
Sbjct: 849 SEDNGRVRYTLLSPTEKFSLHPLTGELVVTGHLDRESEPRYILKVEARD 897
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 33/205 (16%)
Query: 26 QLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
++V +T N + LK P++ + +++G L+ T+ +D + A Y L I +
Sbjct: 380 RVVMVRVTPAFPNLQYVLK-PSSENVGFKLNARTG-LITTTKLMDFHDRAHYQLHIRTSP 437
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
+A T V +D++D N+++P+F++ Y +L+ N+ +S+ +V+AT
Sbjct: 438 ----GQASTVVVIDIVDCNNHAPLFNRSSY-------DGTLDENI---PPGTSVLAVTAT 483
Query: 146 DADGDK---VAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELT-------VEAHDLQ 195
D D + V Y +A P L + ++ T P ++YEL V A D
Sbjct: 484 DRDHGENGYVTYSIAGPKALPFSIDPYLGIISTSKP----MDYELMKRIYTFRVRASDWG 539
Query: 196 SPSRYAREPAQVWLQFNSPVLQDEQ 220
SP R +E ++LQ + L D Q
Sbjct: 540 SPFRREKE-VSIFLQLRN--LNDNQ 561
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQK 113
+T+ K+GVL VT G +D E ++ + ATD + +E V V V D NDN P FSQ
Sbjct: 2217 TTDFKTGVLTVT-GPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQL 2275
Query: 114 VY 115
VY
Sbjct: 2276 VY 2277
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 31/123 (25%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ ++IT GN F + +P T LL T+ +DRE ++ L +T D
Sbjct: 1172 LTFNITSGN-YMGFFMIHPVTG------------LLSTAQQLDRENKDEHILEVTVLDNG 1218
Query: 88 GIN-KAETHVTVDVLDENDNSPVFSQK-----------------VYRFIVGDLKSSLNSN 129
+ K+ + V V +LD NDN P+FS K VYR + DL LN
Sbjct: 1219 EPSLKSTSRVVVGILDVNDNPPIFSHKLFNVRLPERLSPVSPGPVYRLVASDLDEGLNGR 1278
Query: 130 VSH 132
V++
Sbjct: 1279 VTY 1281
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAE-THVTVDVLDENDNSPVFSQKVY 115
++ T +DRE + Y L + A D + + T V ++V D NDN P SQ V+
Sbjct: 1088 MIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVF 1142
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ YS+ GN F + K G L V +DRE+ + YSL + ATD
Sbjct: 3356 ITYSLIGGNQLGHFTI------------HPKKGELQVAKA-LDREQASSYSLKLRATDSG 3402
Query: 88 GINKAE-THVTVDVLDENDNSPVFSQKVY 115
E T + + V D NDN P F Q Y
Sbjct: 3403 QPPLHEDTDIAIQVADVNDNPPRFFQLNY 3431
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 23/190 (12%)
Query: 36 NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINK-AET 94
ND ++ L N T ++ + +S +GVL DRE+ + L + D + + A+
Sbjct: 1998 NDTLSYFLLNGT--DMFHMVQS-AGVLQTRGVAFDREQQDTHELAVEVRDNRTPQRVAQG 2054
Query: 95 HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDK 151
V V + D NDN P F Y I+ D + + VSATD D
Sbjct: 2055 LVRVSIEDVNDNPPKFKHLPYYTIIQD----------GTEPGDVLFQVSATDEDLGTNGA 2104
Query: 152 VAYKLAVPSNLVVIVPQTGELLLTGDPPSDDV---EYELTVEAHDLQSPSRYAREPAQVW 208
V Y+ A I P G++ L P D +Y L V A D +PS + E V
Sbjct: 2105 VTYEFAEDYTYFRIDPYLGDISLKK--PFDYQALNKYHLKVIARDGGTPSLQSEEEVLVT 2162
Query: 209 LQFNS-PVLQ 217
++ S P+ Q
Sbjct: 2163 VRNKSNPLFQ 2172
>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft
PE=1 SV=3
Length = 5147
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 19/143 (13%)
Query: 35 GNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET 94
N N +++ + R E +SG + V +G +DRE+ +Y L + A+D G +AET
Sbjct: 2943 ANANASYSFSENPGEKFR--IEPQSGNITV-AGHLDREQQDEYILKVVASD--GAWRAET 2997
Query: 95 HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD----GD 150
+T+ + D+NDN+P F Y F +L+ S+ + +G + ATD D
Sbjct: 2998 PITITIQDQNDNAPEFEHSFYSFSFPELQQSI----------ALVGQIIATDRDKQGPNS 3047
Query: 151 KVAYKLAVPSNLVVIVPQTGELL 173
++Y L PS + I P TGE+
Sbjct: 3048 VISYSLQQPSPMFSIDPATGEVF 3070
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDL 122
L+ + +DRE ++Y L I +D G+ E + T+ V D NDN P+F VY F + +
Sbjct: 1877 LILNDTLDRETKSKYELRIRVSD--GVQYTEAYATIQVSDTNDNPPLFEDTVYSFDIPE- 1933
Query: 123 KSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPS----NLVVIVPQTGELLLTGD 177
+ ++ +G + A DAD G V S ++ + PQTG L LT
Sbjct: 1934 ---------NAQRGYQVGQIVARDADLGQNAQLSYGVVSDWANDVFSLNPQTGMLTLTAR 1984
Query: 178 PPSDDVE-YELTVEAHDLQSPS 198
++V+ Y L V+A D PS
Sbjct: 1985 LDYEEVQHYILIVQAQDNGQPS 2006
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 120/281 (42%), Gaps = 43/281 (15%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
EN+ +GT V + + + S + VR I GN+ F L+ E+
Sbjct: 398 ENAVNGTVVAAVAVKDSDSGLNGRTSVR--IVSGNELGHFRLE-----------EAADLH 444
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVG 120
++ +G +DREE+ +Y+L + A D + T H+ +DV D ND+ PVF + Y ++
Sbjct: 445 IVRVNGVLDREEIGKYNLTVVAMDQGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLS 504
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNL--VVIVPQTGELLLT 175
+L + S + S++ATD D +V Y + + L + P TG ++ T
Sbjct: 505 ELAPT----------GSFVASITATDEDTGVNAQVHYDILSGNELKWFSMDPLTGLIVTT 554
Query: 176 GDPPSDDVE--YELTVEAHDLQSPSRYAREPAQV-WLQFNSPVLQDEQLLQMIDRKSEAP 232
G P ++ EL++ A D ++A +V L N Q Q Q + +AP
Sbjct: 555 G-PLDREIRDTVELSISARDGGPNPKFAYTQLKVIILDENDEAPQFSQREQNVTLGEDAP 613
Query: 233 HRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETER 273
+ +T ++ D G + FAL ER
Sbjct: 614 PQTIVALMTA----------TDHDQGTNGSVTFALAPSVER 644
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 33/180 (18%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYSI G+ NH F++ T GV+ V + +++ E +++YSL + A D
Sbjct: 2313 IRYSIVLGDQNHDFSISEDT------------GVVRV-AKNLNYERLSRYSLTVRAEDCA 2359
Query: 88 GINKA--ETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
N A +T+++LD NDN P F Y V +++++ N + + +V+A
Sbjct: 2360 LENPAGDTAELTINILDINDNRPTFLDSPYLARV--MENTVPPNGGY------VLTVNAY 2411
Query: 146 DAD----GDKVAYKLA-VPSNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQSP 197
DAD +V Y L S+L I +G++ L P D EY LT+ A D SP
Sbjct: 2412 DADTPPLNSQVRYFLKEGDSDLFRINASSGDIALL--KPLDREQQSEYTLTLVAMDTGSP 2469
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 29 RYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+Y I GN ++ F L N + S + L T+G++DRE Y L I+A D
Sbjct: 193 QYEIVAGNVDNKFRLVTTA-----NPSGDTSYLHLETTGNLDRESRGSYQLNISARDGGS 247
Query: 89 INK-AETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
+ V V +LD NDN P+F D SLN ++ +
Sbjct: 248 PPRFGYLQVNVTILDVNDNPPIFDHS-------DYNVSLNETALPGTPVVTVMASDNDLG 300
Query: 148 DGDKVAYKLAVPSNLVVIVPQTG 170
D K+ Y LA + + P+TG
Sbjct: 301 DNSKITYYLAETEHQFTVNPETG 323
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 69 IDREEVAQYSLVITATDVKG--INKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+DRE + Y L ITA D +G E+ + + +LDENDNSPVF K Y V +
Sbjct: 2236 LDRELRSSYLLNITARD-RGEPPQSTESQLLIRILDENDNSPVFDPKQYSASVAE----- 2289
Query: 127 NSNVSHWKKFSSIGSVSATDAD 148
N+++ + + VSATD D
Sbjct: 2290 NASIG-----AMVLQVSATDVD 2306
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 68 DIDREEVAQYSLVITATDVKGINK----AETHVTVDVLDENDNSPVFSQKVYRFIVGDLK 123
+IDRE + + L + ATD ++ E VTV V D NDN+PVF +
Sbjct: 1555 EIDRESIDTFRLTVVATDRAQPSERQLSTEKLVTVIVEDINDNAPVFVSMNAAILPPKFS 1614
Query: 124 SSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKL-AVPSNLVVIVPQTGELLLTGDPP 179
+S S+ +++ V A DAD V Y++ + P L + TG + T P
Sbjct: 1615 TSKGSS-------TAVMQVHAKDADSSSNGLVTYEIVSGPQELFKLQRNTGIITFTPGPQ 1667
Query: 180 -SDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSP 214
+V Y+LT+++ D S R ++V++ +P
Sbjct: 1668 FKQEVRYQLTLKSTDEAVQSE--RRSSEVYITIITP 1701
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P+ ++RYSI+ GN+ F S + ++G +++ +D + + +Y L IT
Sbjct: 3260 PNGMLRYSISGGNERQDF------------SVDERTGGIVIQQ-QLDYDLIQEYHLNITV 3306
Query: 84 TDVKGINKAET--HVTVDVLDENDNSPVFSQKVYRFIV 119
D+ G + + +T+ + D NDN PVF+ K Y +
Sbjct: 3307 QDL-GYHPLSSVAMLTIILTDVNDNPPVFNHKEYHCYI 3343
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 51 IRNSTESKSGVL----LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDEND 105
I +TE GV L +DREE Y+L ++ D +++ V + V+DEND
Sbjct: 1089 IEGNTERMFGVFPDGYLFVRAPLDREERDYYALTVSCRDAGQPSRSSVVPVVIHVIDEND 1148
Query: 106 NSPVFSQKVYRFIV 119
N+P F+ + F +
Sbjct: 1149 NAPQFTNSTFTFSI 1162
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTV--DVLDENDNSPVFS 111
S ++G+L +T+ +D EEV Y L++ A D G T +TV +VLD NDN+P+F
Sbjct: 1971 SLNPQTGMLTLTA-RLDYEEVQHYILIVQAQD-NGQPSLSTTITVYCNVLDLNDNAPIFD 2028
Query: 112 QKVY 115
Y
Sbjct: 2029 PMSY 2032
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 25/240 (10%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTV--DVLDENDNSPVFSQK--VYRFI 118
L T +DRE+++QY + + A D TV +V D NDN P F + +Y
Sbjct: 659 LTTRRPLDREKMSQYEISVIARDQGAPTPQSATATVWLNVADVNDNDPQFYPRHYIYSLA 718
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKL-AVPSNLVVIVPQTGELLLTGD 177
D L V + + + D D + Y+L + L + ++G + L GD
Sbjct: 719 DDDDDIKLKKEVEKERILLHVTASDKDDGDNALIEYRLESGGEGLFQLDARSGAISLRGD 778
Query: 178 PPSD---DVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPV--LQDEQL------LQMID 226
P+ Y+L V A D + R +++ A V + S + L+ Q QM++
Sbjct: 779 APASMHWKPHYKLLVSARD--AGQRRSQQDAIVEIVLKSKLEMLECGQAQAGGYEFQMVE 836
Query: 227 RKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWIT 286
E++R ++ R + T+G+ I + + + + F+I + IT
Sbjct: 837 DH-------EQQRNSQPNREVGIVQVKSTNGKANSHIEYDIIQGDRAQNFRIDTRSGRIT 889
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 30/120 (25%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD-- 85
V YS+ +GN+ F L + T L +DRE + L++ A D
Sbjct: 1313 VYYSLAKGNEAGQFNLDSATGQ-------------LSLGRRLDRESQEIHHLIVVAKDAA 1359
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQ---------------KVYRFIVGDLKSSLNSNV 130
+K + +T+ VLDENDN+P F+Q ++ RF D +NS V
Sbjct: 1360 LKHPLSSNASITIVVLDENDNAPEFTQSSSEVSVLETSPTGTELMRFRASDADQGVNSQV 1419
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
YSI GN +F + + T EI ST S+ +DREE + Y+LVI A D G+
Sbjct: 3583 YSIINGNLKQSFKI-DVQTGEI--STASR----------LDREETSTYNLVIGAIDT-GL 3628
Query: 90 --NKAETHVTVDVLDENDNSPVFS 111
V +++ D NDN P F+
Sbjct: 3629 PPQTGSATVHIELEDVNDNGPTFT 3652
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 64 VTSGDI------DREEVAQYSLVITATDVKGINKAETHVT-VDVLDENDNSPVFSQKVYR 116
+SGDI DRE+ ++Y+L + A D T + V+V D NDN PVF + Y
Sbjct: 2438 ASSGDIALLKPLDREQQSEYTLTLVAMDTGSPPLTGTGIVRVEVQDINDNDPVFELQSYH 2497
Query: 117 FIV 119
V
Sbjct: 2498 ATV 2500
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 38/143 (26%)
Query: 15 ILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEV 74
+ V S++ + + Y I QG+ F + +++SG + T+ +DREE
Sbjct: 853 VQVKSTNGKANSHIEYDIIQGDRAQNFRI------------DTRSG-RITTARPLDREEQ 899
Query: 75 AQYSLVITATDVKGINK-------AETHVTVDVLDENDNSPVFS---------------- 111
A Y L I A+ + + V + ++D NDN+PVF+
Sbjct: 900 ANYRLTILASSSSSSSAAASSVSYGQCIVNIAIIDLNDNAPVFALDRESEPTISLPENAA 959
Query: 112 --QKVYRFIVGDLKSSLNSNVSH 132
Q++Y V D + +NS +S+
Sbjct: 960 VGQEIYLSRVRDRDAGVNSRISY 982
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVY 115
SG+L V +D E Y + I A D + ++ T +T++V D NDN+PV Q +Y
Sbjct: 2758 SGLLSVGQDGLDYELTHLYEIWIEAADGDTPSLRSVTLITLNVTDANDNAPVMEQLIY 2815
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 49 HEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD--VKGINKAETHVTVDVLDENDN 106
H R +S++G + T+ +DREE + Y L + A D + + ++T+ V D NDN
Sbjct: 2534 HMHRFHIDSETGEI-STATTLDREETSVYHLTLMAQDSSITEPRASSVNLTISVSDVNDN 2592
Query: 107 SPVFSQKVYRFIV 119
P F Y V
Sbjct: 2593 IPKFDSTTYNVAV 2605
>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1
Length = 3298
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 23/154 (14%)
Query: 66 SGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSS 125
+G +D E+ +Y L + A D G ++ ++TV V D NDN+P FSQ +Y+ ++
Sbjct: 2334 TGPLDFEQCDRYQLQLLAHD--GPHEGRANLTVLVEDVNDNAPAFSQSLYQVML------ 2385
Query: 126 LNSNVSHWKKFSSIGSVSATDADGDK---VAYKLAVPSNLVVIVPQTGELL------LTG 176
+ H S+I SVSATD D ++Y LA P++ + P G L G
Sbjct: 2386 ----LEHTPPGSAILSVSATDRDSGANGHISYHLASPADGFSVDPNNGTLFTIVGTVALG 2441
Query: 177 DPPSDDVEYELTVEAHDLQSPSRYAREPAQVWLQ 210
S V ++ +EA D +P R AR V LQ
Sbjct: 2442 HDGSGAV--DVVLEARDHGAPGRAARATVHVQLQ 2473
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
EN GT V + P+ + YS+ Q +++ +P T E+
Sbjct: 1116 ENQPPGTSVGR--VFATDRDSGPNGRLTYSLQQLSEDSKAFRIHPQTGEV---------- 1163
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIVG 120
T +DRE+ + Y L++ D ++ T V V VLD NDNSP F Q G
Sbjct: 1164 --TTLQTLDREQQSSYQLLVQVQDGGSPPRSTTGTVHVAVLDLNDNSPTFLQ-ASGAAGG 1220
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVP-SNLVVIVPQTGELLLTGDP- 178
L + V +++ + + + + Y L P S L + P +GE LLT P
Sbjct: 1221 GLPIQVPDRVPPGTLVTTLQAKDPDEGENGTILYTLTGPGSELFSLHPHSGE-LLTAAPL 1279
Query: 179 -PSDDVEYELTVEAHDLQSPSRYA 201
++ Y LT+ AHD SP R A
Sbjct: 1280 IRAERPHYVLTLSAHDQGSPPRSA 1303
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
PH LVR++++ G+ + F L + SG L + +D E A++ LV+ A
Sbjct: 2633 PHGLVRFTVSSGDPSGLFEL------------DESSGTLRLAHA-LDCETQARHQLVVQA 2679
Query: 84 TDVKGINKAETHVTVDVLDENDNSPVF 110
D G + A VT++V D ND+ P F
Sbjct: 2680 ADPAGAHFALAPVTIEVQDVNDHGPAF 2706
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 97/250 (38%), Gaps = 35/250 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET--HVTVDVLDENDNSPVFSQKVYRFIVG 120
L T+ +DRE+ Y+ ++A D T VT+ V D ND++P F R +
Sbjct: 1911 LRTAAALDREQCPSYTFSVSAVDGAAAGPLSTTVSVTITVRDVNDHAPTFPTSPLRLRLP 1970
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLA-VPSNLVVIVPQTGELLLTG 176
S ++ ++ ++ A D D + Y+LA P + TGE+ +
Sbjct: 1971 RPGPSFSTPT------LALATLRAEDRDAGANASILYRLAGTPPPGTTVDSYTGEIRVAR 2024
Query: 177 DP----PSDDVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAP 232
P P D V L + A DL P+R A V LQ + E+ + SEA
Sbjct: 2025 SPVALGPRDRV---LFIVATDLGRPARSATGVIIVGLQGEA-----ERGPRFPRASSEAT 2076
Query: 233 HRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGD 292
R T V P + G G I +++ E+ F I+ IT
Sbjct: 2077 IRENAPPGTPIVSPR-----AVHAGGTNGPITYSILSGNEKGTFSIQPSTGAIT------ 2125
Query: 293 VRVKKRWDFE 302
VR + DFE
Sbjct: 2126 VRSAEGLDFE 2135
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 34 QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN-KA 92
+G + H FAL ST+ L+ + +DREE Y+L +TATD +A
Sbjct: 406 EGGEGH-FAL----------STQDSVIYLVCVARRLDREERDAYNLRVTATDSGSPPLRA 454
Query: 93 ETHVTVDVLDENDNSPVFSQKVYR 116
E + V D NDN+P F +++YR
Sbjct: 455 EAAFVLHVTDVNDNAPAFDRQLYR 478
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
V Y + G D H F L S +G L V +DRE+ A++ L + A+D
Sbjct: 1580 VSYRLASGGDGH-FRL------------HSSTGALSVVR-PLDREQRAEHVLTVVASDHG 1625
Query: 88 GINKAETHV-TVDVLDENDNSPVFSQKVYRFIV 119
++ T V TV V D ND +P F Q+ Y ++
Sbjct: 1626 SPPRSATQVLTVSVADVNDEAPTFQQQEYSVLL 1658
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
Y+++ TF L E R + LV +G++DRE + Y L + A D
Sbjct: 180 YALSGDGAGETFRL------ETRPGPDGTPVPELVVTGELDRENRSHYMLQLEAYDGGSP 233
Query: 90 -NKAETHVTVDVLDENDNSPVFSQKVYRFIV 119
+A+ + V +LD ND++P F+Q Y +V
Sbjct: 234 PRRAQALLDVTLLDINDHAPAFNQSRYHAVV 264
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 25 HQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVL--LVTSGDIDREEVAQYSLVIT 82
H V YSI GN F L+ P E S L LV +D E + QY+L +
Sbjct: 2515 HAAVDYSIISGNWGRVFQLE-PRLAEAGESAGPGPRALGCLVLLEPLDFESLTQYNLTVA 2573
Query: 83 ATD-VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIV 119
A D + + VTV VLD NDN PVF++ YR V
Sbjct: 2574 AADRGQPPQSSVVPVTVTVLDVNDNPPVFTRASYRVTV 2611
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
V YS+ G H F++ +PT SG++ T+ +D E Q L++ ATD
Sbjct: 508 VTYSLAPGAHTHWFSI-DPT-----------SGII-TTAASLDYELEPQPQLIVVATD-G 553
Query: 88 GINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
G+ + TV V D NDN P F + Y +SL F V+AT
Sbjct: 554 GLPPLASSATVSVALQDVNDNEPQFQRTFY-------NASLPEGTQPGTCFL---QVTAT 603
Query: 146 DAD 148
DAD
Sbjct: 604 DAD 606
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 37/284 (13%)
Query: 10 VKGLPILVASSHKHPHQL--VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSG 67
G + + +H P +L V S++ G+ F+L ++ SG LL T
Sbjct: 804 APGTSVGIVQAHNPPGRLAPVTLSLSGGDPRGLFSL------------DAVSG-LLQTLR 850
Query: 68 DIDREEVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSS 125
+DRE + L + G+ A V VL D NDNSP F +
Sbjct: 851 PLDRELLGPV-LELEVRAGSGVPPAFAVARVRVLLDDVNDNSPAFPAPEDTVL------- 902
Query: 126 LNSNVSHWKKFSSIGSVSATDADGDKVAYKL-AVPSNLVVIVPQTGEL-LLTGDPPSDDV 183
L N + ++ ++ +V + L A + P TG + L+ PS
Sbjct: 903 LPPNTAPGTPIYTLRALDPDSGVNSRVTFTLLAGGGGAFTVDPTTGHVRLMRPLGPSGGP 962
Query: 184 EYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRA 243
+EL +EA D SP R + +V V+QD + R + +R++ T A
Sbjct: 963 AHELELEARDGGSPPRTSHFRLRV-------VVQDVGTRGLAPRFNSPTYRVDLPSGTTA 1015
Query: 244 VRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITV 287
++ DG G I + L E F + ++ W+ V
Sbjct: 1016 GTQVLQVQAQAPDG---GPITYHLAAEGASSPFGLEPQSGWLWV 1056
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 23/157 (14%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFS 111
S + +GVL T +DREE + +L + A D +G THVTV V DEND++P F
Sbjct: 1695 SLDPDTGVL-TTLRALDREEQEEINLTVYAQD-RGSPPQLTHVTVRVAVEDENDHAPTFG 1752
Query: 112 QKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKL--AVPSNLVVIV 166
+ L+ V + ++ + A+D D ++ Y++ PS V+
Sbjct: 1753 -----------SAHLSLEVPEGQDPQTLTMLRASDPDVGANGQLQYRILDGDPSGAFVLD 1801
Query: 167 PQTGELLLTGDPPSDDVE--YELTVEAHDLQSPSRYA 201
+GE T P +VE ++L +EA D P+ A
Sbjct: 1802 LASGE-FGTMRPLDREVEPAFQLRIEARDGGQPALSA 1837
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
EN+ GT + + A P + YSI GN+ TF+++ P+T I + S G
Sbjct: 2079 ENAPPGTPIVSPRAVHAGGTNGP---ITYSILSGNEKGTFSIQ-PSTGAI--TVRSAEG- 2131
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVY 115
+D E + LV+ A G A T +T+ + D NDN+P F + Y
Sbjct: 2132 -------LDFEVSPRLRLVLQAE--SGGAFAFTVLTLTLQDANDNAPRFLRPHY 2176
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E ++ GT L + + P L+ YS+ G L + + R S
Sbjct: 589 EGTQPGTCF--LQVTATDADSGPFGLLSYSLGAG-------LGSSGSPPFRIDAHSGD-- 637
Query: 62 LLVTSGDIDREE-VAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVY 115
+ T+ +DR++ + + +TA D G+ K+ +V V + DENDN P F + Y
Sbjct: 638 -VCTTRTLDRDQGPSSFDFTVTAVDGGGL-KSMVYVKVFLSDENDNPPQFYPREY 690
>sp|Q5DRC3|PCDBH_PANTR Protocadherin beta-17 OS=Pan troglodytes GN=PCDHB17 PE=3 SV=1
Length = 795
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
L+T G +DRE A+Y++ IT TD+ K E ++TV V D NDN+P F+Q Y V +
Sbjct: 403 LLTEGALDRESRAEYNITITVTDLGTPRLKTEYNITVLVSDVNDNAPAFTQTSYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSN-------LVVIVPQTGE 171
NS H IGSVSATD D +V Y L P N LV I G
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQNPHLPLASLVSINTDNGH 512
Query: 172 LLLTGDPPSDDV-EYELTVEAHDLQSPS 198
L + + E+E V A D SP+
Sbjct: 513 LFALRSLDYEALQEFEFRVGATDRGSPA 540
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
YSI+ + H F RN ++ K LV +DREE Q L +TA D
Sbjct: 170 YSISTNSYFHLFT---------RNHSDGKKYPELVLDQALDREEQPQLRLTLTALDGGSP 220
Query: 90 NKAET-HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD 148
+ T V + ++D NDN P F+Q+ Y V + N+ + S + +VSA D D
Sbjct: 221 PRIGTSQVLIVIVDINDNVPEFAQRRYEVQVPE-----NTPIG-----SLVITVSARDLD 270
Query: 149 G---DKVAYKLAVPSNLVV----IVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
+++Y SN ++ I TGE+ L ++++ Y + VEA D
Sbjct: 271 AGTHGELSYSFFQYSNQIIQAFEINSITGEIRLKKALDFEEIQSYHMEVEASD 323
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSP 108
+D EE+ Y + + A+D G++ T V ++V+D NDN+P
Sbjct: 307 LDFEEIQSYHMEVEASDGGGLSGKCT-VAIEVMDINDNAP 345
>sp|Q5DRD9|PCDBA_PANTR Protocadherin beta-10 OS=Pan troglodytes GN=PCDHB10 PE=3 SV=1
Length = 798
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 14/105 (13%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+L+T G +DRE A+Y++ IT TD+ K E ++TV V D NDN+P F+Q Y V
Sbjct: 402 ILITEGALDRELRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVR 461
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSNL 162
+ NS H IGSVSATD D +V Y L P +L
Sbjct: 462 E----NNSPALH------IGSVSATDGDSGTNAQVTYSLLPPQDL 496
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 35 GNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET 94
G N+T + + +I S E LV +DREE + SL +TA D +++ T
Sbjct: 166 GIQNYTISPNSFFHIKISGSDEGMIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGT 225
Query: 95 H-VTVDVLDENDNSPVFSQKVY 115
V + VLD NDN+P F+Q +Y
Sbjct: 226 STVRIVVLDVNDNAPQFAQALY 247
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSP 108
+D E V Y + I A D G++ A V V+VLD NDN P
Sbjct: 307 LDYELVNSYKINIQAMDGGGLS-ARCRVLVEVLDTNDNPP 345
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3
Length = 3503
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 22/185 (11%)
Query: 69 IDREEVAQYSLVITATD-VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLN 127
+DRE +Y L + ATD A+T V V VLD NDN P F + Y F + +
Sbjct: 1058 LDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKSKYEFRIEE------ 1111
Query: 128 SNVSHWKKFSSIGSVSATDAD-GDKVA--YKLAVPSNLVVIVPQTGELLLTGDPPSDDVE 184
+ ++ S +G V+A+D D G+ A Y L ++ + P TGE + T +P ++
Sbjct: 1112 ----NLRRGSVVGVVTASDLDLGENAAIRYSLLPINSSFQVHPVTGE-ISTREPLDRELR 1166
Query: 185 --YELTVEAHDLQSPSRYAREPAQVW---LQFNSPVLQDEQLLQMIDRKSEAPHRIEKRR 239
Y+L VEA D +P R AR P ++ + N+P + D Q ++ + E P E R
Sbjct: 1167 ELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ-EDVVSVREEQPPGTEVVR 1225
Query: 240 VTRAV 244
V RAV
Sbjct: 1226 V-RAV 1229
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVL---LVTSGDIDREEVAQYSLV 80
P+ RY+I GN N F L +S + GVL L SG +DRE YSL+
Sbjct: 152 PYNTQRYNIVSGNVNDAFRL---------SSHRERDGVLYLDLQISGFLDRETTPGYSLL 202
Query: 81 ITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS 138
I A D G +TV++ D NDN P+F+Q Y V + N+ V +S
Sbjct: 203 IEALD-GGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPE-----NATVG-----TS 251
Query: 139 IGSVSATDADGDK 151
+ V A+D D D+
Sbjct: 252 VLQVYASDTDADE 264
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 46/227 (20%)
Query: 36 NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG--INKAE 93
N ++L N T + + + +SG L+ T G +DRE A Y+ ++ ATD + A
Sbjct: 1931 NARLVYSLANETQWQF--AIDGQSG-LITTVGKLDRELQASYNFMVLATDGGRYEVRSAT 1987
Query: 94 THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GD 150
V ++VLD NDN P+F + Y +G + + + + K V A DAD
Sbjct: 1988 VPVQINVLDINDNRPIFERYPY---IGQVPALIQPGQTLLK-------VQALDADLGANA 2037
Query: 151 KVAYKLAVPSNLVV----IVPQTGEL------------LL--------TGDPPSDDVEY- 185
++ Y L ++ V I P TG L LL G+PP +
Sbjct: 2038 EIVYSLNAENSAVSAKFRINPSTGALSASQSLASESGKLLHLEVVARDKGNPPQSSLGLI 2097
Query: 186 ELTVEAHDLQSPS-RYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEA 231
EL + +P R+ E +V L+ NSP +LLQ++ +S+
Sbjct: 2098 ELLIGEAPQGTPVLRFQNETYRVMLKENSP--SGTRLLQVVALRSDG 2142
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 15/123 (12%)
Query: 56 ESKSGVLLVTSGDI-DREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKV 114
+S+SG LVTS + D E+ +Y + + A+D+ G KA V V++ ++ +P F+++
Sbjct: 2864 DSESG--LVTSAFVFDYEQRQRYDMELLASDMGG-KKASVAVRVEIESRDEFTPQFTERT 2920
Query: 115 YRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAYKLAVPSNLVVIVPQTGE 171
YRF+ L + V+ + + +G V+ATD+D +V Y+L+ P + + +G
Sbjct: 2921 YRFV-------LPAAVALPQGY-VVGQVTATDSDSGPDGRVVYQLSAPHSHFKVNRSSGA 2972
Query: 172 LLL 174
+L+
Sbjct: 2973 VLI 2975
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 51/216 (23%)
Query: 12 GLPILVASSH---KHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGD 68
G P+ A +H V YS+ + + FA+ + H L+ S
Sbjct: 894 GAPLYAAHAHDKDSGSSGQVTYSLVKESGKGLFAIDARSGH-------------LILSQH 940
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVT--VDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+D E +++L++TATD G+ T++T VDV D NDN PVF + Y
Sbjct: 941 LDYESSQRHTLIVTATD-GGVPSLSTNLTILVDVQDVNDNPPVFEKDEYSV--------- 990
Query: 127 NSNVSHWKKFSS-IGSVSATDAD---GDKVAYKL----------AVPSNLVV----IVPQ 168
NVS + ++ I V+A+D D ++ Y++ ++ S+ V I P
Sbjct: 991 --NVSESRSINAQIIQVNASDLDTGNNARITYRIVDAGVDNVTNSISSSDVSQHFGIFPN 1048
Query: 169 TGELLLTG--DPPSDDVEYELTVEAHDLQSPSRYAR 202
+G + L D + D Y+LTV A D +P+ +A+
Sbjct: 1049 SGWIYLRAPLDRETRD-RYQLTVLATDNGTPAAHAK 1083
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 36/163 (22%)
Query: 2 ENSKSGTGVKGLPILVASS-HKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
ENS+ G + +VAS + P+ + YSIT GN + F S +S SG
Sbjct: 1806 ENSEPGV----IHTVVASDLDEGPNADLIYSITGGNLGNKF------------SIDSSSG 1849
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKA---ETHVTVDVLDENDNSPVFSQKVYRF 117
L ++ +DRE+ ++Y+L I A+D +G K+ ++T+ V D+NDN+P RF
Sbjct: 1850 EL--SARPLDREQHSRYTLQIQASD-RGQPKSRQGHCNITIFVEDQNDNAP-------RF 1899
Query: 118 IVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLA 157
+ S+ + +S+ +SA DAD ++ Y LA
Sbjct: 1900 KLSKYTGSVQEDAPLG---TSVVQISAVDADLGVNARLVYSLA 1939
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 23/153 (15%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
+V Y+I +G K+ T E+R S SG + + +G++D E + Y + ATD
Sbjct: 592 MVNYTIGEG-------FKHLTEFEVR----SASGEICI-AGELDFERRSSYEFPVLATDR 639
Query: 87 KGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATD 146
G++ + + + D NDN PVF + Y+ L+ S S + I +V ATD
Sbjct: 640 GGLSTTAM-IKMQLTDVNDNRPVFYPREYKV---SLRES--PKASSQASSTPIVAVVATD 693
Query: 147 AD-GD--KVAYKLAV--PSNLVVIVPQTGELLL 174
D G+ +V+Y++ + + I TGE+ +
Sbjct: 694 PDYGNFGQVSYRIVAGNEAGIFRIDRSTGEIFV 726
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 42/190 (22%)
Query: 20 SHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSL 79
+H+ P VRYSI G+ + F S E+ SG + + +D E +Q L
Sbjct: 804 AHRSP---VRYSIYSGDPDGYF------------SIETNSGNIRIAK-PLDHEAKSQVLL 847
Query: 80 VITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIV---GDLKSSLNSNVSHWKKF 136
I AT + T V ++V D NDN+P F + R V +L + L + +H K
Sbjct: 848 NIQATLGEPPVYGHTQVNIEVEDVNDNAPEFEASMVRISVPESAELGAPLYAAHAHDKDS 907
Query: 137 SSIGSVSATDADGDKVAYKLAVPS--NLVVIVPQTGELLLTGDPPSDDVEYE------LT 188
S G +V Y L S L I ++G L+L S ++YE L
Sbjct: 908 GSSG----------QVTYSLVKESGKGLFAIDARSGHLIL-----SQHLDYESSQRHTLI 952
Query: 189 VEAHDLQSPS 198
V A D PS
Sbjct: 953 VTATDGGVPS 962
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 35 GNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN--KA 92
G D H FAL +T S L++ +DRE V+ Y+L + ATD KG A
Sbjct: 386 GGDGH-FAL----------TTRDNSIYLVIVHLPLDREIVSNYTLSVVATD-KGTPPLHA 433
Query: 93 ETHVTVDVLDENDNSPVFSQKVY 115
+ + + D NDN P F Q +Y
Sbjct: 434 SKSIFLRITDVNDNPPEFEQDLY 456
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVF--SQKVYRFIVG 120
LV +D E +Y L + A+D ++A T +TV V DENDN+PVF Q F +
Sbjct: 2434 LVLKRRLDYELQQEYELDVIASDAA--HEARTVLTVRVNDENDNAPVFLAQQPPAYFAIL 2491
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD----KVAY 154
S ++ ++S F + +V+ATDAD + KV Y
Sbjct: 2492 PAISEISESLS--VDFDLL-TVNATDADSEGNNSKVIY 2526
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQ 112
+DRE A YSLV A + G N V V V DENDN+P F Q
Sbjct: 85 LDRETRASYSLV--AIPLSGRN---IRVLVTVKDENDNAPTFPQ 123
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 28 VRYSITQG--NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
+ YSI +G +D H +PT+ IR T +D EE + Y L + A+D
Sbjct: 1239 ITYSIVKGRDSDGHGLFSIDPTSGVIR------------TRVVLDHEERSIYRLGVAASD 1286
Query: 86 VKGINKAET--HVTVDVLDENDNSPVFSQKVYRFIV 119
G ET + V+VLD NDN P F+ F V
Sbjct: 1287 -GGNPPRETVRMLRVEVLDLNDNRPTFTSSSLVFRV 1321
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 36 NDNHTFAL-KNPTTHEIRNSTESKSGVLLVTSG-DIDREEVAQYSLVITATDVKGINKAE 93
N T++L + P TH + ++G++ S D + E V Q ++V V ++
Sbjct: 483 NSALTYSLAETPETHAQWFQIDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTA 542
Query: 94 THVTVDVLDENDNSPVFSQKVYRFIVGD 121
T V V + D NDN P+F Q Y V +
Sbjct: 543 T-VLVTIHDVNDNEPIFDQSFYNVSVAE 569
>sp|Q5DRC8|PCDB6_PANTR Protocadherin beta-6 OS=Pan troglodytes GN=PCDHB6 PE=3 SV=1
Length = 794
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT G +DRE A+Y++ IT TD+ K + +TV V D NDN+P F+Q Y V +
Sbjct: 401 LVTEGALDRESRAEYNITITVTDLGTPRLKTQQSITVQVSDVNDNAPAFTQTSYTLFVRE 460
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 461 ----NNSPALH------IGSVSATDRDSGINAQVTYSLLPPQDPHLPLASLVSINADNGH 510
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 511 LFALRSLDYEALQAFEFRVGATDRGSPA 538
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 29/176 (16%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEI-RNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
L RY+I+ NP H + RN +E + LV +DREE Q L + A D
Sbjct: 166 LQRYTIS----------SNPHFHVLTRNRSEGRKFPELVLDKPLDREEQPQLRLTLIALD 215
Query: 86 VKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSA 144
++ T + + VLD NDN P F++++Y V + N+ + S + +VSA
Sbjct: 216 GGSPPRSGTSEIQIQVLDINDNVPEFAEELYEAQVPE-----NNPLG-----SLVITVSA 265
Query: 145 TDADG---DKVAYKLAVPSNL---VVIVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
D D KV+Y L ++ I TGE+ L ++++ Y+L VEA D
Sbjct: 266 RDLDAGSFGKVSYALFQVDDVNQPFEINAITGEIRLRKALDFEEIQSYDLDVEATD 321
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 32/177 (18%)
Query: 28 VRYSITQGND-NHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
V Y++ Q +D N F + N T EIR +D EE+ Y L + ATD
Sbjct: 276 VSYALFQVDDVNQPFEI-NAITGEIR------------LRKALDFEEIQSYDLDVEATDG 322
Query: 87 KGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATD 146
G++ + + V VLD NDN+P + F + + +L + + S +D
Sbjct: 323 GGLS-GKCSLLVRVLDVNDNAPELTMS---FFISPIPENLPEII--------VAVFSVSD 370
Query: 147 AD-GDKVAYKLAVPSNLVVIVPQTGE----LLLTGDPPSDD-VEYELTVEAHDLQSP 197
AD G ++ +NL ++ T E L+ G + EY +T+ DL +P
Sbjct: 371 ADSGHNQQVICSIENNLPFLLRPTVENFYTLVTEGALDRESRAEYNITITVTDLGTP 427
>sp|Q9Y5E3|PCDB6_HUMAN Protocadherin beta-6 OS=Homo sapiens GN=PCDHB6 PE=2 SV=1
Length = 794
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 30 YSITQGNDNHT----FALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
+S++ + H +++N +R S E+ LVT G +DRE A+Y++ IT TD
Sbjct: 366 FSVSDADSGHNQQVICSIENNLPFLLRPSVENF--YTLVTEGALDRESRAEYNITITVTD 423
Query: 86 VKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSA 144
+ K + +TV V D NDN P F+Q Y V + NS H IGSVSA
Sbjct: 424 LGTPRLKTQQSITVQVSDVNDNVPAFTQTSYTLFVRE----NNSPALH------IGSVSA 473
Query: 145 TDADGD---KVAYKLAVP-------SNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
TD D +V Y L P S+LV I G L + ++ +E V A D
Sbjct: 474 TDRDSGINAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATD 533
Query: 194 LQSPS 198
SP+
Sbjct: 534 RGSPA 538
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEI-RNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
L RY+I+ NP H + RN +E + LV +DREE Q L + A D
Sbjct: 166 LQRYTIS----------SNPHFHVLTRNRSEGRKFPELVLDKPLDREEQPQLRLTLIALD 215
Query: 86 VKGINKAET-HVTVDVLDENDNSPVFSQKVY 115
++ T + + VLD NDN P F+Q++Y
Sbjct: 216 GGSPPRSGTSEIQIQVLDINDNVPEFAQELY 246
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 28 VRYSITQGND-NHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
V Y++ Q +D N F + N T EIR +D EE+ Y + + ATD
Sbjct: 276 VSYALFQVDDVNQPFEI-NAITGEIR------------LRKALDFEEIQSYDVDVEATDG 322
Query: 87 KGINKAETHVTVDVLDENDNSPVFSQKVY 115
G++ + + V VLD NDN+P + +
Sbjct: 323 GGLS-GKCSLVVRVLDVNDNAPELTMSFF 350
>sp|Q9UN67|PCDBA_HUMAN Protocadherin beta-10 OS=Homo sapiens GN=PCDHB10 PE=1 SV=1
Length = 800
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+L+T G +DRE A+Y++ IT TD+ K E ++TV V D NDN+P F+Q Y V
Sbjct: 402 ILITEGALDREIRAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVR 461
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTG 170
+ NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 462 E----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNG 511
Query: 171 ELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 512 HLFALRSLDYEALQAFEFRVGATDRGSPA 540
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVY 115
LV +DREE + SL +TA D +++ T V + VLD NDN+P F+Q +Y
Sbjct: 194 LVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALY 247
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 24/138 (17%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNS 128
+D E V Y + I A D G++ A V V+VLD NDN P IV SS ++
Sbjct: 307 LDYELVNSYKINIQAMDGGGLS-ARCRVLVEVLDTNDNPP-------ELIV----SSFSN 354
Query: 129 NVSHWKKFSSIGSVSATDAD----GDKVAYKLAVPSNLVVIVPQTGE---LLLTGDPPSD 181
+V+ + + D D G V Y + NL ++ + E +L+T
Sbjct: 355 SVAENSPETPLAVFKINDRDSGENGKMVCY---IQENLPFLLKPSVENFYILITEGALDR 411
Query: 182 DV--EYELTVEAHDLQSP 197
++ EY +T+ DL +P
Sbjct: 412 EIRAEYNITITVTDLGTP 429
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2
Length = 4588
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 44/287 (15%)
Query: 23 HPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVIT 82
H V Y I GN F + NP SG + +T +D E + Y+L+I
Sbjct: 1692 HSQSSVVYEIKDGNTGDAFDI-NP-----------HSGTI-ITQKALDFETLPIYTLIIQ 1738
Query: 83 ATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSV 142
T++ G++ T V V + DENDN+PVF Q Y ++ + +S+NS V + + +
Sbjct: 1739 GTNMAGLS-TNTTVLVHLQDENDNAPVFMQAEYTGLISE-SASINSVVLTDRNVPLV--I 1794
Query: 143 SATDADGDK---VAYKLAVPS--NLVVIVPQTGEL--LLTGDPPSDDVEYELTVEAHDLQ 195
A DAD D + Y + PS I TG + +L+ D + + TV+ HD+
Sbjct: 1795 RAADADKDSNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSI-FHFTVQVHDMG 1853
Query: 196 SPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKR------ 249
+P +A A V + +ID P + + PT +
Sbjct: 1854 TPRLFAEYAANV-------------TVHVIDINDCPPVFAKPLYEASLLLPTYKGVKVIT 1900
Query: 250 IDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVK 296
++ ++ D ++++++ + EKF + + +TV +R +
Sbjct: 1901 VNATDADSSAFSQLIYSITEGNIGEKFSMDYKTGALTVQNTTQLRSR 1947
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHE---IRNSTESK 58
ENS + T V G P+ + HP VRY I G+ + F + + +R T+
Sbjct: 45 ENSAAKTYV-GHPVKMGVYITHPAWEVRYKIVSGDSENLFKAEEYILGDFCFLRIRTKGG 103
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFI 118
+ +L +RE Y+L++ A + +A T V V VLD ND P+FS Y
Sbjct: 104 NTAIL------NREVKDHYTLIVKALEKNTNVEARTKVRVQVLDTNDLRPLFSPTSYSV- 156
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQTGELLLT 175
SL N + +SI VSATDAD + Y +++ I P +G ++LT
Sbjct: 157 ------SLPENTAIR---TSIARVSATDADIGTNGEFYYSFKDRTDMFAIHPTSGVIVLT 207
Query: 176 G 176
G
Sbjct: 208 G 208
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 9 GVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGD 68
G + L + AS + + YSI GN++ F++ +SK+G + + +
Sbjct: 3246 GTEVLQVYAASRDIEANAEITYSIISGNEHGKFSI------------DSKTGAVFIIE-N 3292
Query: 69 IDREEVAQYSLVITATD--VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+D E +Y L + ATD ++ T V V+V D NDN+PVFSQ Y ++ + + L
Sbjct: 3293 LDYESSHEYYLTVEATDGGTPSLSDVAT-VNVNVTDINDNTPVFSQDTYTTVISE-DAVL 3350
Query: 127 NSNVSHWKKFSSIGSVSATDADG---DKVAYKL--AVPSNLVVIVPQTGELLLTGDPPSD 181
S+ +V A DADG + Y + + I P GE+ +T +
Sbjct: 3351 E---------QSVITVMADDADGPSNSHIHYSIIDGNQGSSFTIDPVRGEVKVTKLLDRE 3401
Query: 182 DVE-YELTVEAHDLQSPSR 199
+ Y LTV+A D SP R
Sbjct: 3402 TISGYTLTVQASDNGSPPR 3420
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ Y IT GN F++ K+G++ TS +DRE+ ++ L +T TD
Sbjct: 1174 LMYKITSGNPQGFFSI------------HPKTGLITTTSRKLDREQQDEHILEVTVTDNG 1221
Query: 88 GINKAE-THVTVDVLDENDNSPVFSQKVYRF 117
K+ V V +LDENDN P F QK Y+
Sbjct: 1222 SPPKSTIARVIVKILDENDNKPQFLQKFYKI 1252
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ YSI GN +F + +P E++ + +DRE ++ Y+L + A+D
Sbjct: 3370 IHYSIIDGNQGSSFTI-DPVRGEVK------------VTKLLDRETISGYTLTVQASDNG 3416
Query: 88 GINKAETH-VTVDVLDENDNSPVFSQKVYRFIV 119
+ T V +DV D NDN+PVFS+ Y I+
Sbjct: 3417 SPPRVNTTTVNIDVSDVNDNAPVFSRGNYSVII 3449
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNS 128
+DRE+ Y L ITATD G ++ V V VLD NDNSPV + +Y ++
Sbjct: 2984 LDREKRDNYLLTITATD--GTFSSKAIVEVKVLDANDNSPVCEKTLY-------SDTIPE 3034
Query: 129 NVSHWKKFSSIGSVSATDAD---GDKVAYK-LAVPSNLVVIVPQTGEL 172
+V K I +SATDAD ++ Y L + + P TGEL
Sbjct: 3035 DVLPGKL---IMQISATDADIRSNAEITYTLLGSGAEKFKLNPDTGEL 3079
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 103/250 (41%), Gaps = 36/250 (14%)
Query: 50 EIRNSTESKSGV----------LLVTSGDIDREEVAQYSLVITATDVKGINKAET--HVT 97
EIR S SGV ++ TS +DRE + Y L + ATD +G+ + +
Sbjct: 1068 EIRYSIRDGSGVGVFKIGEETGVIETSDRLDRESTSHYWLTVFATD-QGVVPLSSFIEIY 1126
Query: 98 VDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAY 154
++V D NDN+P S+ VY + + + K S+ + A D D DK+ Y
Sbjct: 1127 IEVEDVNDNAPQTSEPVYYPEI----------MENSPKDVSVVQIEAFDPDSSSNDKLMY 1176
Query: 155 KLAV--PSNLVVIVPQTGELLLTG---DPPSDDVEYELTVEAHDLQSPSRYAREPAQVWL 209
K+ P I P+TG + T D D E+ L V D SP + A+V +
Sbjct: 1177 KITSGNPQGFFSIHPKTGLITTTSRKLDREQQD-EHILEVTVTDNGSPPK--STIARVIV 1233
Query: 210 QFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVR-PTKRIDFSETDGEMEGRIVFALE 268
+ Q LQ K P R + R A R P + ++ D I +++E
Sbjct: 1234 KILDENDNKPQFLQKF-YKIRLPEREKPDRERNARREPLYHVIATDKDEGPNAEISYSIE 1292
Query: 269 KETEREKFKI 278
E KF I
Sbjct: 1293 DGNEHGKFFI 1302
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 69 IDREEVAQYSLVITATDVKGIN--KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+D E+ Q+++ + A D G+ ++ VTVDV D NDN P+F Q++Y ++ +
Sbjct: 2348 LDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNDNPPLFEQQIY-------EARI 2399
Query: 127 NSNVSHWKKFSSIGSVSATDADGDKVAYKL 156
+ + H + + + A +D DK+ Y +
Sbjct: 2400 SEHAPHGHFVTCVKAYDADSSDIDKLQYSI 2429
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNS 128
+ R++ A + L +T +D KA T V V VL N N P F+Q Y K++ +
Sbjct: 426 VKRQQAAHFELEVTTSD----RKASTKVLVKVLGANSNPPEFTQTAY-------KAAFDE 474
Query: 129 NVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELT 188
NV S+ +V + + V Y +A ++ VP + S++++YEL
Sbjct: 475 NVPIGTTVMSLSAVDPDEGENGYVTYSIANLNH----VPFAIDHFTGAVSTSENLDYELM 530
Query: 189 VEAHDLQ 195
+ L+
Sbjct: 531 PRVYTLR 537
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 35 GNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET 94
G+ F L NP T E++ ST +DREE A Y L++ ATD G +
Sbjct: 3064 GSGAEKFKL-NPDTGELKTSTP------------LDREEQAVYHLLVRATDGGG-RFCQA 3109
Query: 95 HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---K 151
+ + + D NDN+P FS Y V + + + + V ATDAD K
Sbjct: 3110 SIVLTLEDVNDNAPEFSADPYAITV----------FENTEPGTLLTRVQATDADAGLNRK 3159
Query: 152 VAYKL 156
+ Y L
Sbjct: 3160 ILYSL 3164
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
Y+++ GN++ F + + ++G+L + S +DRE +Y+L IT D+
Sbjct: 754 YAVSGGNEDSCFMI------------DMETGMLKILS-PLDRETTDKYTLNITVYDLGIP 800
Query: 90 NKAETHVT-VDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD 148
KA + V V+D NDN P F Q+ Y V + K + S I V ATD D
Sbjct: 801 QKAAWRLLHVVVVDANDNPPEFLQESYFVEVSEDK----------EVHSEIIQVEATDKD 850
Query: 149 ---GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYE--LTVEAHDLQSPSRYARE 203
V Y + ++ I TG ++ P ++++E L +EA D ARE
Sbjct: 851 LGPNGHVTYSIVTDTDTFSIDSVTG-VVNIARPLDRELQHEHSLKIEARD------QARE 903
Query: 204 PAQVW 208
Q++
Sbjct: 904 EPQLF 908
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
V YSIT G+ F + T GV+ V + +D E Y L I ATD
Sbjct: 2214 VFYSITDGDPFSQFTINFNT------------GVINVIA-PLDFEAHPAYKLSIRATDSL 2260
Query: 88 GINKAETHVTVDVLDENDNSPVFSQKVY 115
AE V + V D NDN PVF+Q+ Y
Sbjct: 2261 TGAHAEVFVDIIVDDINDNPPVFAQQSY 2288
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIV 119
++ + +D E+ + Y+L + ATD G T V + V+D ND+ P FS Y ++
Sbjct: 1411 IIVAKPLDAEQKSNYNLTVEATD--GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVI 1465
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 69 IDREEVAQYSLVITATDVKGINK---AETHVTVDVLDENDNSPVFSQKVY 115
+DRE A Y+L + A D +G+ + A V V VLD NDN PVF + Y
Sbjct: 3187 LDRELQAVYTLSLKAVD-QGLPRRLTATGTVIVSVLDINDNPPVFEYREY 3235
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ-YSLVITATDV 86
++YSI GND+ F + +S +G+ +T ++ R + YSL ++ +D
Sbjct: 2425 LQYSILSGNDHKHFVI------------DSATGI--ITLSNLHRHALKPFYSLNLSVSD- 2469
Query: 87 KGINKAETHVTVDVLDENDNSPVFSQKVY 115
G+ ++ T V V V+ N +SP F Q Y
Sbjct: 2470 -GVFRSSTQVHVTVIGGNLHSPAFLQNEY 2497
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
V YSI GN ++F + +P I+ T+ ++DR A+Y L++ ATD
Sbjct: 1597 VLYSIESGNIGNSFMI-DPVLGSIK------------TAKELDRSNQAEYDLMVKATDKG 1643
Query: 88 GINKAE-THVTVDVLDENDNSPVFSQKVY 115
+E T V + V ++ SP F+ K Y
Sbjct: 1644 SPPMSEITSVRIFVTIADNASPKFTSKEY 1672
>sp|Q9Y5E8|PCDBF_HUMAN Protocadherin beta-15 OS=Homo sapiens GN=PCDHB15 PE=1 SV=1
Length = 787
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT G +DRE A+Y++ IT TD+ K E +TV V D NDN+P F+Q Y V +
Sbjct: 403 LVTEGALDRETRAEYNITITITDLGTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP 159
NS H IGSVSATD D +V Y L P
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPP 493
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVY 115
LV ++DREE A+ L +TA D ++ T + + VLD NDN+P F Q +Y
Sbjct: 194 LVLDTELDREEQAELRLTLTAVDGGSPPRSGTVQILILVLDANDNAPEFVQALY 247
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFS 111
+D E ++ Y L I A+D G++ + V+V VLD NDN P S
Sbjct: 307 LDFETMSSYDLDIEASDGGGLS-GKCSVSVKVLDVNDNFPELS 348
>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens
GN=CELSR3 PE=1 SV=2
Length = 3312
Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats.
Identities = 80/280 (28%), Positives = 117/280 (41%), Gaps = 53/280 (18%)
Query: 42 ALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDV 100
AL N + E+ S + +SG L+ T+ +DRE + ++ L +TA D A T V V V
Sbjct: 366 ALMNSRSLELF-SIDPQSG-LIRTAAALDRESMERHYLRVTAQDHGSPRLSATTMVAVTV 423
Query: 101 LDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVA---YKLA 157
D ND+SPVF Q YR +L NV ++ I + ATD D A Y+
Sbjct: 424 ADRNDHSPVFEQAQYR-------ETLRENV---EEGYPILQLRATDGDAPPNANLRYRFV 473
Query: 158 VPSNLVV-------IVPQTGELLLTGDPPSDDVE-YELTVEAHDL-QSPSRYAREPAQVW 208
P I P++G + +G + +E YEL VEA D Q P P
Sbjct: 474 GPPAARAAAAAAFEIDPRSGLISTSGRVDREHMESYELVVEASDQGQEPG-----PRSAT 528
Query: 209 LQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRA---VRPTK---RIDFSETDGEMEGR 262
++ + VL D AP EKR V + VRP R+ ++ D + G
Sbjct: 529 VRVHITVL---------DENDNAPQFSEKRYVAQVREDVRPHTVVLRVTATDRDKDANGL 579
Query: 263 IVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFE 302
+ + + R F I G+++V DFE
Sbjct: 580 VHYNIISGNSRGHFAID--------SLTGEIQVVAPLDFE 611
Score = 55.1 bits (131), Expect = 7e-07, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDV---KGINKAETHVTVDVLDENDNSPVFSQ 112
+ +SG L+ TSG +DRE + Y LV+ A+D G A V + VLDENDN+P FS+
Sbjct: 489 DPRSG-LISTSGRVDREHMESYELVVEASDQGQEPGPRSATVRVHITVLDENDNAPQFSE 547
Query: 113 KVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKLAVPSNL--VVIVP 167
K Y V ++ + + + + V+ATD D D V Y + ++ I
Sbjct: 548 KRY---VAQVREDV-------RPHTVVLRVTATDRDKDANGLVHYNIISGNSRGHFAIDS 597
Query: 168 QTGELLLTGDPPSD---DVEYELTVEAHDLQSP 197
TGE+ + P D + EY L + A D P
Sbjct: 598 LTGEIQVVA--PLDFEAEREYALRIRAQDAGRP 628
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 30/179 (16%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
ENS G+ V I + P+ + Y I +GN F + + SG
Sbjct: 1078 ENSIVGSVVA--QITAVDPDEGPNAHIMYQIVEGNIPELFQM------------DIFSGE 1123
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFS--QKVYRFIV 119
L D+D E +Y +V+ AT +++A HV + +D+NDNSPV + Q ++ V
Sbjct: 1124 LTALI-DLDYEARQEYVIVVQATSAPLVSRATVHVRL--VDQNDNSPVLNNFQILFNNYV 1180
Query: 120 GDLKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPSNL-VVIVPQT-GELLLT 175
+ + S + IG + A D D D + Y + L +++V QT GEL L+
Sbjct: 1181 SNRSDTFPSGI--------IGRIPAYDPDVSDHLFYSFERGNELQLLVVNQTSGELRLS 1231
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 66 SGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKS 124
SG +DRE V Y + A D A VTV VLD NDN P F+ K Y
Sbjct: 711 SGPLDRESVEHYFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHL------- 763
Query: 125 SLNSNVSHWKKFSSIGSVSATDADGDK-VAYKL--AVPSNLVVIVPQTGELLLTGDPPSD 181
LN + + +S+ SV+A D D + ++Y++ N I Q G L+T P D
Sbjct: 764 RLNEDAA---VGTSVVSVTAVDRDANSAISYQITGGNTRNRFAISTQGGVGLVTLALPLD 820
Query: 182 ---DVEYELTVEAHD 193
+ ++L + A D
Sbjct: 821 YKQERYFKLVLTASD 835
Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats.
Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 31/218 (14%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L I H + V+Y+ G D PT+ +R T +DRE
Sbjct: 981 LQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPTSGIVR------------TVRRLDRE 1028
Query: 73 EVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
V+ Y L A D +G+ T V++ V+ D NDN+PVF + + V + NS V
Sbjct: 1029 AVSVYELTAYAVD-RGVPPLRTPVSIQVMVQDVNDNAPVFPAEEFEVRVKE-----NSIV 1082
Query: 131 SHWKKFSSIGSVSATDADGDKVAYKL--AVPSNLVVIVPQ---TGELLLTGDPPSD-DVE 184
S + ++A D D A+ + V N+ + +GEL D + E
Sbjct: 1083 G-----SVVAQITAVDPDEGPNAHIMYQIVEGNIPELFQMDIFSGELTALIDLDYEARQE 1137
Query: 185 YELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLL 222
Y + V+A SR V NSPVL + Q+L
Sbjct: 1138 YVIVVQATSAPLVSRATVHVRLVDQNDNSPVLNNFQIL 1175
Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L + K + LV Y+I GN FA+ +S +G + V + +D E
Sbjct: 565 LRVTATDRDKDANGLVHYNIISGNSRGHFAI------------DSLTGEIQVVA-PLDFE 611
Query: 73 EVAQYSLVITATDV--KGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
+Y+L I A D ++ ++ V+D ND+ P+F ++ V + + L +V
Sbjct: 612 AEREYALRIRAQDAGRPPLSNNTGLASIQVVDINDHIPIFVSTPFQVSVLE-NAPLGHSV 670
Query: 131 SHWKKFSSIGSVSATDADGDKVAYKLA--VPSNLVVIVPQTGELLLTGDPPSDDVE-YEL 187
H I +V A + ++ Y L P VI TG + ++G + VE Y
Sbjct: 671 IH------IQAVDADHGENARLEYSLTGVAPDTPFVINSATGWVSVSGPLDRESVEHYFF 724
Query: 188 TVEAHDLQSP 197
VEA D SP
Sbjct: 725 GVEARDHGSP 734
Score = 38.9 bits (89), Expect = 0.057, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKV 114
++ SG + + + +D E+ Y+L ITA D KA+T +V V V D NDN+P F
Sbjct: 907 DADSGAITLQA-PLDYEDQVTYTLAITARDNGIPQKADTTYVEVMVNDVNDNAPQFVASH 965
Query: 115 YRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSN---LVVIVPQ 168
Y +V + F+S+ +SATD D +V Y + I P
Sbjct: 966 YTGLVSE----------DAPPFTSVLQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPT 1015
Query: 169 TGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVWLQ---FNSPVLQDEQL 221
+G + + V YELT A D P QV +Q N+PV E+
Sbjct: 1016 SGIVRTVRRLDREAVSVYELTAYAVDRGVPPLRTPVSIQVMVQDVNDNAPVFPAEEF 1072
Score = 38.1 bits (87), Expect = 0.078, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 33/203 (16%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E++ GT V + V + + + + Y IT GN + FA+ ++ GV
Sbjct: 767 EDAAVGTSV----VSVTAVDRDANSAISYQITGGNTRNRFAI------------STQGGV 810
Query: 62 LLVTSG-DIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
LVT +D ++ + LV+TA+D + ++ +V +++ D N + PVF Y V
Sbjct: 811 GLVTLALPLDYKQERYFKLVLTASD-RALHD-HCYVHINITDANTHRPVFQSAHYSVSVN 868
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPSNLVVIVPQTGELLLTGDPP 179
+ + S+I +SA+D D G+ + NL +T P
Sbjct: 869 EDRP----------MGSTIVVISASDDDVGENARITYLLEDNLPQFRIDADSGAITLQAP 918
Query: 180 ---SDDVEYELTVEAHDLQSPSR 199
D V Y L + A D P +
Sbjct: 919 LDYEDQVTYTLAITARDNGIPQK 941
>sp|Q5DRD0|PCDB4_PANTR Protocadherin beta-4 OS=Pan troglodytes GN=PCDHB4 PE=3 SV=1
Length = 795
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 37 DNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETH 95
DN F LK PT K+ LVT +DRE A+Y++ IT TD+ K +
Sbjct: 386 DNLPFILK-PTL---------KNFYTLVTERPLDRETSAEYNITITVTDLGTPRLKTQQS 435
Query: 96 VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KV 152
+TV V D NDN+P F+Q Y V + NS H IGSVSATD D +V
Sbjct: 436 ITVQVSDVNDNAPAFAQTSYTLFVRE----NNSPALH------IGSVSATDRDSGTNAQV 485
Query: 153 AYKLAVP-------SNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
Y L P S+LV I G L + ++ +E V A D SP+
Sbjct: 486 TYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPA 539
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 1 MENSKSGTGVKGLPILVASSHK-HPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKS 59
+ENS+ GT P+L+A + L +Y+I+ + H RN +E K
Sbjct: 142 LENSQPGTL---FPLLIAEDLDVGSNGLQKYTISPNSHFHILT---------RNHSEGKK 189
Query: 60 GVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVY 115
LV +DREE ++SL + A D ++ T V + ++D NDN+P F Y
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPY 246
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Query: 28 VRYSITQGND--NHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
V Y + Q +D TF++ N T EI + +D E++ Y + I ATD
Sbjct: 276 VSYGLFQASDEIKQTFSI-NEVTGEI------------LLKKKLDFEKIKSYHVEIEATD 322
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
G++ T V ++V+D NDN P I+ L SS+ N + SI +
Sbjct: 323 GGGLSGKGT-VVIEVVDVNDNPP-------ELIISSLTSSIPENAP--ETVVSIFRIRDR 372
Query: 146 DADGDKVAYKLAVPSNLVVIVPQTGE--LLLTGDPPSD---DVEYELTVEAHDLQSP 197
D+ G+ ++P NL I+ T + L + P D EY +T+ DL +P
Sbjct: 373 DS-GENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITITVTDLGTP 428
>sp|Q9Y5E1|PCDB9_HUMAN Protocadherin beta-9 OS=Homo sapiens GN=PCDHB9 PE=2 SV=2
Length = 797
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+L+T G +DRE A+Y++ IT TD+ K E +T+ V D NDN+P F+Q Y V
Sbjct: 402 ILMTEGALDRESKAEYNITITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVR 461
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTG 170
+ NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 462 E----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNG 511
Query: 171 ELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ ++ V A D SP+
Sbjct: 512 HLFALRSLDYEALQAFDFRVGASDRGSPA 540
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + SL +TA D +++ T + + VLD NDN+P F+Q +Y +
Sbjct: 194 LVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALY-----E 248
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSNLVV----IVPQTGELLL 174
++ NS V S I VSA DAD +V+Y S ++ I P +GE+ L
Sbjct: 249 TQAPENSPVG-----SLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGEIFL 303
>sp|Q9NRJ7|PCDBG_HUMAN Protocadherin beta-16 OS=Homo sapiens GN=PCDHB16 PE=1 SV=3
Length = 776
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT +DRE A+Y++ +T TD+ K E ++TV + D NDN+P F+Q Y V +
Sbjct: 403 LVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPTFTQTSYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGH 512
Query: 172 LLLTGDPPSDDV-EYELTVEAHDLQSPS 198
L + + E+E V A D SP+
Sbjct: 513 LFALRSLDYEALREFEFRVSATDRGSPA 540
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 49 HEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNS 107
HE R+ + LV ++DREE Q L +TA D ++ T V ++V+D NDN+
Sbjct: 183 HEFRDGRKYPE---LVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNA 239
Query: 108 PVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAYKLAVP----S 160
P F Q +Y+ + + NS + S + +VSA D DG K++Y L P S
Sbjct: 240 PEFEQPIYKVQIPE-----NSPLG-----SLVATVSARDLDGGANGKISYTLFQPSEDIS 289
Query: 161 NLVVIVPQTGELLLTGDPPSDDV-EYELTVEAHD 193
+ + P TGE+ L + V YE+ ++A D
Sbjct: 290 KTLEVNPMTGEVRLRKQVDFEMVTSYEVRIKATD 323
>sp|Q5F226|FAT2_MOUSE Protocadherin Fat 2 OS=Mus musculus GN=Fat2 PE=2 SV=1
Length = 4351
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 29/184 (15%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHE---IRNSTESK 58
ENS T V+ P+ + PH +V+Y I G+ F + +R T+S
Sbjct: 44 ENSAPKTYVES-PVKMGMYLAEPHWVVKYRIISGDAAGVFKTEEHVVGNFCFLRIRTKSS 102
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFI 118
+ LL +RE Y+LV+ A+D +A T V V +LD+ND P+FS YRF
Sbjct: 103 NTALL------NREVRDSYTLVVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRFT 156
Query: 119 VGD---LKSSLNSNVSHWKKFSSIGSVSATDADGDKVA---YKLAVPSNLVVIVPQTGEL 172
+ + LK S I V+ATDAD + A Y S + I P +G +
Sbjct: 157 ISEDRPLK-------------SPICKVTATDADLGQNAEFYYAFNARSEVFAIHPTSGVV 203
Query: 173 LLTG 176
+ G
Sbjct: 204 TVAG 207
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 12 GLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDR 71
G PIL+ S+ V Y + +GN N F++ S SG L+ T +D
Sbjct: 1676 GSPILLISAASSSD--VTYELREGNKNSVFSMN------------SYSG-LISTQKRLDH 1720
Query: 72 EEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVS 131
E+V+ Y L I +++ G+ E V ++DENDN+P F + + VG + + +
Sbjct: 1721 EKVSSYQLKIRGSNMAGV-FTEVVALVYIIDENDNAPAFLKSTF---VGHISEAAPLHSL 1776
Query: 132 HWKKFSSIGSVSATDADGDK---VAYKLAVPSNL--VVIVPQTGELLLTGDPPSDDVE-Y 185
+ +S + A+D+D + + YK+ P L I P G L +T + + +
Sbjct: 1777 ILGEDNSPLVIRASDSDQEANSLLVYKILEPEALKFFKIDPSMGTLTITSELDYETTPLF 1836
Query: 186 ELTVEAHDLQSPSRYAREPAQVWLQF----NSPVLQDEQLLQM 224
+ ++ HD +P +A A+V + +SP EQ+ ++
Sbjct: 1837 QFSIYVHDQGTPILFAPRSARVIIHVRDVNDSPPRFSEQIYEV 1879
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
+EN++ G V L L A + Q+ Y IT+G+ F++ E R
Sbjct: 2918 VENNEPGELVATLKTLDADISEQNRQVTCY-ITEGDPLGQFSISQ-VGDEWR-------- 2967
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+ + +DRE +A+Y L ITA+D G +A V V VLD NDNSP SQ +Y G
Sbjct: 2968 --ITSRKTLDREHIAKYLLRITASD--GKFQASVPVEVFVLDINDNSPQCSQLLY---TG 3020
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-SNLVVIVPQTGEL 172
++ + H+ I VSA D D D ++ Y L P + + P TGEL
Sbjct: 3021 KVREDVTPG--HF-----ILKVSAIDVDMDTNAQITYSLHGPGAQEFKLDPHTGEL 3069
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 41 FALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDV 100
+ALK P++ +++G L+ T+ +D E QY L + + + +A T V +D+
Sbjct: 395 YALK-PSSGSTVFKLNARTG-LITTTKPVDFHEQNQYQLHVKTS----LGQATTTVIIDI 448
Query: 101 LDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-GDK--VAYKLA 157
+D N+++PVF++ Y + +L+ N+ +S+ +V+ATD D GD + Y +A
Sbjct: 449 VDCNNHAPVFNRSSY-------EGTLDENI---PPGTSVLTVTATDQDHGDNGHITYSIA 498
Query: 158 VPSNL-VVIVPQTGELLLTGDPPSDDVE-----YELTVEAHDLQSPSRYARE 203
P + I P G + T S D E Y V A D SP R +E
Sbjct: 499 GPKAVPFSIDPYLGVISTTK---SMDYELMKRIYTFRVRASDWGSPFRQEKE 547
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQK 113
+T+ K+GVL VT G +D E ++ + ATD + +E V V V D NDN P FSQ
Sbjct: 2217 TTDFKTGVLTVT-GPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQL 2275
Query: 114 VY 115
VY
Sbjct: 2276 VY 2277
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 25 HQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITAT 84
H + Y I GN+ F + E ++G+L V + +D E + Y L +T
Sbjct: 747 HGRLVYVIADGNEEGCFDI------------ELETGLLTVAAA-LDYETTSFYVLNVTVY 793
Query: 85 DVKGINKAE-THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVS 143
D+ K+ +TV V D ND P F Y+ + + + + + V+ K
Sbjct: 794 DLGTPPKSSWKLLTVTVKDWNDKPPRFPPGGYQLTISE-DTEVGTTVAELK-------TR 845
Query: 144 ATDA-DGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSD-DVEYELTVEAHD 193
TD+ D +V Y L P+ + P TGEL++TG + + +Y L EA D
Sbjct: 846 DTDSEDNGRVRYTLLTPTEKFSLHPLTGELVVTGQLDRESEPQYILKAEARD 897
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQK------- 113
LL T+ +DRE +Y L +T D ++ + V V VLD NDNSP+FS K
Sbjct: 1193 LLSTAKQLDRENKDEYVLEVTVQDNGDPPLRSTSRVVVCVLDVNDNSPMFSHKLFNVRLS 1252
Query: 114 ----------VYRFIVGDLKSSLNSNVSH 132
VYR + D LN ++++
Sbjct: 1253 ERLSPLSPEPVYRLVASDPDEGLNGSITY 1281
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 36 NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETH 95
N T++L P E + + L T +DRE Y+LV ATD G +
Sbjct: 3045 NAQITYSLHGPGAQEFKLDPHTGE---LTTLSVLDRERKDVYNLVAKATDGGG-QSCQAE 3100
Query: 96 VTVDVLDENDNSPVF 110
VT+ + D NDN+P F
Sbjct: 3101 VTLHIEDVNDNAPRF 3115
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
++ YS+ GN F + + K G L V +D E+ YSL I ATD
Sbjct: 3357 VITYSLVGGNQLGHFTI------------DPKKGKLQVAKA-LDWEQTPSYSLRIRATDS 3403
Query: 87 KGINKAE-THVTVDVLDENDNSPVFSQKVY 115
E T V V+V+D NDN P F Q Y
Sbjct: 3404 GQPPLHEDTEVAVEVVDVNDNPPRFFQLNY 3433
>sp|Q9Y5E4|PCDB5_HUMAN Protocadherin beta-5 OS=Homo sapiens GN=PCDHB5 PE=1 SV=1
Length = 795
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT +DRE A+Y++ IT TD+ K E ++TV V D NDN+P F+Q Y V +
Sbjct: 402 LVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE 461
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSN 161
NS H IGSVSATD D +V Y L P N
Sbjct: 462 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQN 494
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + SL +TA D ++ T + + VLD NDN+P F Q Y V +
Sbjct: 194 LVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEVQVPE 253
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAYKL 156
S LNS V VSA D D VAY L
Sbjct: 254 -NSPLNSLVV---------VVSARDLDAGAYGSVAYAL 281
>sp|Q5DRD3|PCDBF_PANTR Protocadherin beta-15 OS=Pan troglodytes GN=PCDHB15 PE=3 SV=1
Length = 787
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT G +DRE A+Y++ IT TD+ K + ++TV V D NDN+P F+Q Y V +
Sbjct: 403 LVTEGALDRETRAEYNITITITDLGTPRLKTQHNITVLVSDVNDNAPAFTQTSYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINTDNGH 512
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 513 LFALRSLDYEALQAFEFHVGATDRGSPA 540
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVY 115
LV ++DREE A+ L +TA D ++ T + + VLD NDN+P F+Q +Y
Sbjct: 194 LVLDTELDREEQAELRLTLTAVDGGSPPRSGTVQILILVLDANDNAPEFAQALY 247
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 69 IDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFS 111
+D E ++ Y L I A+D G++ + V+V VLD NDN P S
Sbjct: 307 LDFETMSSYDLDIEASDGGGLS-GKCSVSVKVLDVNDNFPELS 348
>sp|Q5DRC4|PCDB9_PANTR Protocadherin beta-9 OS=Pan troglodytes GN=PCDHB9 PE=3 SV=1
Length = 797
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 22/149 (14%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+L+T G +DRE A+Y++ IT TD+ K E +T+ V D NDN+P F+Q Y V
Sbjct: 402 ILMTEGALDRESKAEYNITITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVR 461
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTG 170
+ NS H +GSVS TD D +V Y L P ++LV I G
Sbjct: 462 E----NNSPALH------VGSVSPTDGDSGTNAQVTYSLLPPQDPHLPLASLVSINADNG 511
Query: 171 ELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 512 HLFALRSLDYEALQAFEFRVGATDRGSPA 540
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + SL +TA D +++ T + + VLD NDN+P F+Q +Y +
Sbjct: 194 LVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALY-----E 248
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSNLVV----IVPQTGELLL 174
++ NS V S I VSA DAD +V+Y S ++ I P +GE+ L
Sbjct: 249 TQAPENSPVG-----SRIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPSSGEIFL 303
>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2
Length = 4981
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P+ V+YSI+ G+ + R +KSGV+ T +DREE Y L + A
Sbjct: 720 PNGTVKYSISAGDRS-------------RFQIHAKSGVI-STKMALDREEKTAYQLQVVA 765
Query: 84 TDVKGINKA-ETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSV 142
TD + + VTV VLD DN PVFSQ Y F+V + NV+ +GSV
Sbjct: 766 TDGGNLQSPNQAIVTVTVLDTQDNPPVFSQAAYSFVVFE-------NVALGYH---VGSV 815
Query: 143 SATDAD-GDKVAYKLAVPS--NLVVIVPQTGEL 172
SAT D ++Y + + + P TG+L
Sbjct: 816 SATTMDLNANISYLITTGDQRGMFAMNPVTGQL 848
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ Y IT G+ FA+ NP T + L T+ IDREE + Y L I A+
Sbjct: 826 ISYLITTGDQRGMFAM-NPVTGQ------------LTTASVIDREEQSFYQLKIVAS--G 870
Query: 88 GINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
G +T V + V D NDN+P F Q V S+N+ V +W+ SI A D
Sbjct: 871 GAVTGDTVVNITVKDLNDNAPHFLQAV---------ESINA-VENWQAGHSIFQAKAVDP 920
Query: 148 D---GDKVAYKLAV-PSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSP 197
D +V Y L P NL I Q G + L G Y++ + A D+ P
Sbjct: 921 DEGVNGRVLYSLKQNPKNLFTINEQNGNISLLGALDVHAGSYQVEIVASDMGVP 974
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 40/185 (21%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG-VLLVTSGDIDREEVAQYSLVITATD 85
L+ YSI +GN+ FA+ +S SG V LV G +D E + YSL+I A D
Sbjct: 1244 LIHYSILKGNEERQFAI------------DSFSGQVTLV--GKLDYEATSAYSLLIQAVD 1289
Query: 86 VKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS-IGSVS 143
I T +++D+LDENDN+P F KS+L +V + + SV+
Sbjct: 1290 SGAIPLNSTCTLSIDILDENDNTPSFP-----------KSTLFVDVLENMRIGELVSSVT 1338
Query: 144 ATDADGDKVA---YKLAVPSN--LVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDL 194
ATD+D A Y + +N I P TG + L D E Y+L + A D
Sbjct: 1339 ATDSDSGVNADLHYTITGSNNHGTFSISPNTGSIFLA---KKLDFETQSLYKLNITAKDQ 1395
Query: 195 QSPSR 199
P R
Sbjct: 1396 GRPPR 1400
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Query: 66 SGDIDREEVAQYSLVITATDVKGIN--KAETHVTVDVLDENDNSPVFSQKVYR 116
+G++DREEV+ YSL + ATD KG + T V V VLD NDN+PVF+Q +YR
Sbjct: 2109 TGELDREEVSNYSLTVVATD-KGQPPLSSSTEVVVMVLDINDNNPVFAQAMYR 2160
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P+ + Y I GN +F + N T EIR+ +DRE+++ Y L + +
Sbjct: 2701 PNGQLDYEIVNGNQESSFTI-NHATGEIRSIRP------------LDREKISHYELTVKS 2747
Query: 84 TDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGS 141
+D KG T V V +LDENDN+P FSQ ++ S NS + + ++
Sbjct: 2748 SD-KGSPSQSTSVKVIISILDENDNAPRFSQIFSAYV------SENSPLGY-----TVTR 2795
Query: 142 VSATDADGDKVA---YKLAVPSNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
V+ +D D A Y + S I P TG+++++ +D + Y + V AHD
Sbjct: 2796 VTTSDEDIGINAISRYSIVDTSLPFTINPNTGDIVISRPLNREDTDRYRIRVSAHD 2851
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 88/207 (42%), Gaps = 45/207 (21%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
Y I GN+ F L N + + + LV+ G +DRE QY L++ D KG
Sbjct: 174 YRIVSGNEAGRFRLD-----ITLNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVED-KGE 227
Query: 90 NKAETH--VTVDVLDENDNSPVFSQKVYR------FIVGDLKSSLNSNVSHWKKFSSIGS 141
K + V V V D NDN PVF Y+ +VG SS+
Sbjct: 228 PKRRGYLQVNVTVQDINDNPPVFGSSHYQAGVPEDAVVG----------------SSVLQ 271
Query: 142 VSATDAD---GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQ 195
V+A DAD + Y+L + P+TG L+T P D +Y LTV+A D
Sbjct: 272 VAAADADEGTNADIRYRLQDEGTPFQMDPETG--LITVREPLDFEARRQYSLTVQATDRG 329
Query: 196 SPSRYAREPAQVWLQF-----NSPVLQ 217
PS R A+ ++Q N PV++
Sbjct: 330 VPSLTGR--AEAFIQLLDVNDNDPVVK 354
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 7 GTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTS 66
G G K + + + + + LV Y++ G D+ +F + + +SG L+ T
Sbjct: 1754 GDGSKIMQLTAMDADEGANALVTYALISGADD-SFRI------------DPESGDLIATK 1800
Query: 67 GDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRF 117
+DRE ++YSL++ A D G+ ++ + + + D ND++P FS+ VY F
Sbjct: 1801 -RLDREHRSKYSLLVRADD--GLQSSDMRINITISDVNDHTPRFSRPVYSF 1848
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVF 110
L T+ +DREE A Y L I ATD+ ++ T V V +LD NDNSPVF
Sbjct: 641 LSTASSLDREEQAFYCLSILATDLGSPPQSSTAQVNVSLLDINDNSPVF 689
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 35/177 (19%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
L+ Y+I GN+ FA+ S +GV+ + +D E +++ + I+ATD
Sbjct: 3125 LISYNIISGNEEGIFAIN------------SSTGVVTLAKA-LDYEMSSKHEMTISATDG 3171
Query: 87 KGINK-AETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
+ + +TV V+D NDNSPVF + V + S + V H ++AT
Sbjct: 3172 GWVARTGYCSLTVSVIDVNDNSPVFVPDEFFPTVMENAPS-GTTVIH---------LNAT 3221
Query: 146 DADGDK---VAYKL-AVPSNLVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDL 194
DAD +AY + + S+L VI P G + G D E Y LTV+A ++
Sbjct: 3222 DADSGANAVIAYTVQSSDSDLFVIDPNMGVITTQG---FLDFETKQSYHLTVKAFNV 3275
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 34/172 (19%)
Query: 63 LVTSGDIDREEVAQYSLVITATD---VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIV 119
+ SG +DRE+ + SL + A + ++G + E V + VLD ND PVFS YR +
Sbjct: 3357 IYVSGLLDREKEERVSLKVLAKNFGNIRGADIDEVTVNITVLDAND-PPVFSLSTYRVQI 3415
Query: 120 GD---------LKSSLNSN-VSHWKKFSS-IGSVSATDADGDKVAYKLAVPSNLVVIVPQ 168
+ S+ +S+ + W +FS IGS + A I PQ
Sbjct: 3416 SEGVPIGTHVTFVSAFDSDSIPSWSRFSYFIGSGNENGA---------------FSINPQ 3460
Query: 169 TGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVWLQ---FNSPVL 216
TG++ +T + + Y LTV A D +PS V L+ N PVL
Sbjct: 3461 TGQITVTSGLDRESLPVYNLTVLAVDSGTPSATGSASLVVTLEDINDNGPVL 3512
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 27/207 (13%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYSI GN F + +E V +G +DRE +Q L I+A D +
Sbjct: 510 LRYSIVSGNGLGWFHI-----------SEHSGLVTTSAAGGLDRELASQIVLNISARD-Q 557
Query: 88 GINKAETH--VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
G++ ++ + V VLD ND PVFSQ + S+ N + +G+
Sbjct: 558 GVHPKVSYAQLVVTVLDVNDEKPVFSQP------EGYEVSVVENAPTGTELLVLGATDRD 611
Query: 146 DADGDKVAYKLAVPSN---LVVIVPQTGELLLTGDPPSDD-VEYELTVEAHDLQSPSRYA 201
D V + L N L + P +G L ++ Y L++ A DL SP + +
Sbjct: 612 LGDNGTVRFSLQEAENDQRLFRLDPVSGRLSTASSLDREEQAFYCLSILATDLGSPPQSS 671
Query: 202 REPAQVWL---QFNSPVLQDEQLLQMI 225
V L NSPV Q I
Sbjct: 672 TAQVNVSLLDINDNSPVFYPVQYFAHI 698
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ Y+IT GN+ F + G L + S ++DRE +Y L++ A+D +
Sbjct: 1031 IAYTITDGNNGDAFGIF-------------PDGQLYIKS-ELDRELQDRYVLLVVASD-R 1075
Query: 88 GINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
+ V V VL D NDN P+F+ Y F + + S +G VSA
Sbjct: 1076 AVEPLSATVNVTVLLEDVNDNRPLFNSTNYTFYFEE----------EQRAGSFVGKVSAV 1125
Query: 146 DAD 148
D D
Sbjct: 1126 DKD 1128
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 34 QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAE 93
QG N+ P T+ ST +GVL T+ +IDRE++A + L + D +
Sbjct: 3543 QGPFNYYLLSTGPATNYFSLST---AGVL-STTREIDREQIADFYLSVVTRDSGAPQMSS 3598
Query: 94 TH-VTVDVLDENDNSPVFSQKVYRFI--VGDLKSSLNSNVSHWKKFSSIGSVSATDADG- 149
T V + VLD+NDN P S+ V F+ G+L ++GSV D D
Sbjct: 3599 TGTVHITVLDQNDN-PSQSRTVEIFVNYYGNLFPG-----------GTLGSVKPQDPDVL 3646
Query: 150 DKVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHD 193
D L + +P G L+ P S D ++LTV + D
Sbjct: 3647 DSFHCSLTSGVTSLFSIP-AGSCDLSSQPRSTDGTFDLTVVSSD 3689
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 8 TGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSG 67
TG + + A + + + VRY I GN + F + +S +G + V
Sbjct: 2169 TGTDIIQVSAADNDEGTNGQVRYGIVGGNTHQEFRI------------DSVTGAITVAK- 2215
Query: 68 DIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVY 115
+DRE Y+L + ATD + ++ V + +LD ND PVF Y
Sbjct: 2216 SLDRETTPAYTLTVQATDRGSSPRTDSCTVAITLLDMNDFVPVFELSPY 2264
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 59/308 (19%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
MEN G+ V L V + + + YSI G+ FA+ K G
Sbjct: 1954 MENLPLGSTV--LVFNVTDADDGVNSQLSYSIASGDSLGQFAVD-------------KHG 1998
Query: 61 VLLVTSGDIDREEVAQYSLVITATDV----KGINKAETHVTVDVLDENDNSPVFSQKVYR 116
VL T +DRE + Y+LVI D+ + V++ +LD NDN P+F
Sbjct: 1999 VLK-TLKALDRESQSFYNLVIQVHDLPQPPTSRFTSTAQVSIILLDVNDNPPMF------ 2051
Query: 117 FIVGDLKSSLNSNVSHWKKFSSIGSV----SATDADG---DKVAYKLAVPS-NLVVIVPQ 168
L+ +++ + + I +V ATD D + Y L PS N I
Sbjct: 2052 ---------LSPKLTYIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPSGNKFSIGTI 2102
Query: 169 TGELLLTGDPPSDDVE-YELTVEAHDL-QSPSRYAREPAQVWLQF--NSPVLQDEQLLQM 224
GE+ LTG+ ++V Y LTV A D Q P + E + L N+PV
Sbjct: 2103 DGEVHLTGELDREEVSNYSLTVVATDKGQPPLSSSTEVVVMVLDINDNNPVF-------- 2154
Query: 225 IDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPW 284
++A +R++ + ++ ++ D G++ + + ++F+I
Sbjct: 2155 ----AQAMYRVQIKENILTGTDIIQVSAADNDEGTNGQVRYGIVGGNTHQEFRIDSVTGA 2210
Query: 285 ITVDENGD 292
ITV ++ D
Sbjct: 2211 ITVAKSLD 2218
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 28/155 (18%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
EN++ GT V L + A S + + I GN+ F E++ S +
Sbjct: 369 ENAQVGTVVALLTVTDADS-PAANGNISVQILGGNEQRHF--------EVQRSKVPNLSL 419
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGI--------NKAETHVTVDVLDENDNSPVFSQK 113
+ V S +DRE + Y+L ++ +D G + + + V D ND+ PVF Q+
Sbjct: 420 IKVASA-LDRERIPSYNLTVSVSDNSGAPPTAEVQARSSVASLVIFVNDINDHPPVFEQQ 478
Query: 114 VYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD 148
VYR +L+ V S + VSATD D
Sbjct: 479 VYRV-------NLSEEVPPG---SYVSGVSATDGD 503
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E++++GT V L + + + + ++ YSI GN T NP+T +I
Sbjct: 2375 EDARTGTDV--LLVNASDADAAANAVISYSIIGGNSQFTI---NPSTGQI---------- 2419
Query: 62 LLVTSGDIDREEVAQYSLVITATDV--KGINKAETHVTVDVLDENDNSPVFSQKVY 115
+TS +DRE Y+LV+ A+D + T V V + D NDN P F Y
Sbjct: 2420 --ITSALLDRETKDNYTLVVVASDAGSPESLSSSTSVLVTITDVNDNPPRFQHHPY 2473
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L ++ + P+ + Y + GN+++ F L + SG L VT +DRE
Sbjct: 2280 LQVVARDDDQGPNSQLSYVLLGGNEDNAFVL-------------TASGELRVTQ-SLDRE 2325
Query: 73 EVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVY 115
+ LV+TA D T + + V D NDN P F+ +Y
Sbjct: 2326 ARDHFVLVVTAADAGSPALTGTGTINIIVDDINDNVPTFANNMY 2369
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDL 122
+V S ++RE+ +Y + ++A D T VT+ V D NDN+P FS+ Y +L
Sbjct: 2829 IVISRPLNREDTDRYRIRVSAHDSGW--TVSTDVTIFVTDINDNTPRFSRPSYYLDCPEL 2886
Query: 123 KSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQTGELL 173
L S V+ VSATD D +V Y + S I TGE+
Sbjct: 2887 P-ELGSRVTQ---------VSATDPDEGSNGQVFYFIKSQSEYFRINATTGEIF 2930
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFI 118
+GV +T +D E Y L + A D G ++LD NDN PVFS Y
Sbjct: 1895 TGVFNLTRA-LDYETQQYYILTVRAEDGGG-QSTTIRAYFNILDVNDNPPVFSMSSY--- 1949
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNL-VVIVPQTGEL--LLT 175
+SL N+ A D +++Y +A +L V + G L L
Sbjct: 1950 ----STSLMENLPLGSTVLVFNVTDADDGVNSQLSYSIASGDSLGQFAVDKHGVLKTLKA 2005
Query: 176 GDPPSDDVEYELTVEAHDL-QSPSRYAREPAQVWL 209
D S Y L ++ HDL Q P+ AQV +
Sbjct: 2006 LDRESQSF-YNLVIQVHDLPQPPTSRFTSTAQVSI 2039
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 74 VAQYSLVITATDVKGINK-AETHVTVDVLDENDNSPVFSQKVY 115
+ ++S ++TA+D + +ET VT++ +D NDN P F Q Y
Sbjct: 2948 INRHSFIVTASDRGNPSLLSETTVTINTVDSNDNPPQFLQNKY 2990
>sp|Q5DRC6|PCDB8_PANTR Protocadherin beta-8 OS=Pan troglodytes GN=PCDHB8 PE=3 SV=1
Length = 801
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 24/149 (16%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVG 120
L+T +DRE A+Y++ IT TD+ G TH+ + VL D NDN+P F+Q Y V
Sbjct: 404 LLTETPLDRESRAEYNVTITVTDL-GTPGLTTHLNMTVLVSDVNDNAPAFTQASYTLFVR 462
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSN-------LVVIVPQTG 170
+ NS H IGSVSATD D +V Y L P N LV I G
Sbjct: 463 E----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQNPHLPLASLVSINTDNG 512
Query: 171 ELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 513 HLFALRSLDYEALQAFEFRVGASDRGSPA 541
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE A+ L +TA D ++ T V ++V+D NDN+P F Q YR
Sbjct: 195 LVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYR----- 249
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQ----TGELLL 174
++ S +S +S + VSATD D +++Y L S+ + + TGE+ L
Sbjct: 250 VQISEDSPISFL-----VVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFLTGEIRL 304
Query: 175 TGDPPSDDVE-YELTVEAHD 193
+ + YE+ +EA D
Sbjct: 305 KKQLDFEKFQSYEVNIEARD 324
>sp|Q5DRD5|PCDBE_PANTR Protocadherin beta-14 OS=Pan troglodytes GN=PCDHB14 PE=3 SV=1
Length = 798
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 32 ITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN- 90
I DN F LK PT K+ LV+ +DRE A+Y++ IT TD+
Sbjct: 382 ICSIQDNLPFFLK-PTF---------KNFFTLVSEKALDRESQAEYNITITVTDLGTPRL 431
Query: 91 KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD 150
K E ++TV V D NDN+P F+Q Y + + NS H IGSVSATD D
Sbjct: 432 KTEYNITVLVSDVNDNAPAFTQTSYTLFLRE----NNSPALH------IGSVSATDRDSG 481
Query: 151 ---KVAYKLAVP-------SNLVVIVPQTGELLLTGDPPSDDV-EYELTVEAHDLQSPS 198
+V Y L P ++LV I G L + + E+E V A D SP+
Sbjct: 482 TNAQVTYSLLPPQDPQLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPA 540
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 45 NPTTH---EIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDV 100
+P +H +I +S++ K LV +D E+ A+ L +TA D K+ T V + V
Sbjct: 173 SPNSHFYIKIPDSSDRKIYPELVLDRALDYEQEAELRLTLTAVDGGSPPKSGTTLVLIKV 232
Query: 101 LDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAYKL 156
LD NDN+P F Q +Y V + + + W I ++SA D D K++Y
Sbjct: 233 LDINDNAPEFPQSLYEVQVPE-----DRPLGSW-----IATISAKDLDAGNYGKISYTF 281
>sp|Q9UN66|PCDB8_HUMAN Protocadherin beta-8 OS=Homo sapiens GN=PCDHB8 PE=2 SV=3
Length = 801
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVG 120
L+T +DRE A+Y++ IT TD+ G + TH+ + VL D NDN+P F+Q Y V
Sbjct: 404 LLTETPLDRESRAEYNVTITVTDL-GTPRLTTHLNMTVLVSDVNDNAPAFTQTSYTLFVR 462
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTG 170
+ NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 463 E----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINTDNG 512
Query: 171 ELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 513 HLFALRSLDYEALQAFEFRVGASDRGSPA 541
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE A+ L +TA D ++ T V ++V+D NDN+P F Q YR
Sbjct: 195 LVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYR----- 249
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLVVIVPQ----TGELLL 174
++ S +S +S + VSATD D +++Y L S+ + + TGE+ L
Sbjct: 250 VQISEDSPISFL-----VVKVSATDVDTGVNGEISYSLFQASDEISKTFKVDFLTGEIRL 304
Query: 175 TGDPPSDDVE-YELTVEAHD 193
+ + YE+ +EA D
Sbjct: 305 KKQLDFEKFQSYEVNIEARD 324
>sp|Q5DRD1|PCDB3_PANTR Protocadherin beta-3 OS=Pan troglodytes GN=PCDHB3 PE=3 SV=1
Length = 796
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV+ G +DRE ++Y++ IT TD+ K + ++TV V D NDN+P F+Q Y V +
Sbjct: 403 LVSEGALDRETRSEYNITITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQTSYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P S+LV I G
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLVSINADNGH 512
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 513 LFALRSLDYEALQAFEFRVGATDRGSPA 540
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + SL +TA D ++ T + + VLD NDN+P F+Q +Y V
Sbjct: 194 LVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAV-- 251
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDAD 148
+ + +S I +VSA+D D
Sbjct: 252 --------LENTPVYSVIVTVSASDLD 270
>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus
GN=Celsr3 PE=2 SV=1
Length = 3313
Score = 55.1 bits (131), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDV---KGINKAETHVTVDVLDENDNSPVFSQ 112
+ +SG L+ TSG +DRE + Y LV+ A+D G A V + VLDENDN+P FS+
Sbjct: 480 DPRSG-LISTSGRVDREHMESYELVVEASDQGQEPGPRSATVRVHITVLDENDNAPQFSE 538
Query: 113 KVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKLAVPSNL--VVIVP 167
K Y V ++ + + + + V+ATD D D V Y + ++ I
Sbjct: 539 KRY---VAQVREDV-------RPHTVVLRVTATDKDKDANGLVHYNIISGNSRGHFAIDS 588
Query: 168 QTGELLLTGDPPSD---DVEYELTVEAHDLQSP 197
TGE+ + P D + EY L + A D P
Sbjct: 589 LTGEIQVMA--PLDFEAEREYALRIRAQDAGRP 619
Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats.
Identities = 88/322 (27%), Positives = 132/322 (40%), Gaps = 67/322 (20%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVR--YSITQGNDNHTFALKNPTTHEIRNSTESKS 59
EN +GT V + V + P + R YS+ AL N + E+ S + +S
Sbjct: 327 ENEAAGTAV----LRVVAQDPDPGEAGRLVYSLA--------ALMNSRSLELF-SIDPQS 373
Query: 60 GVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFI 118
G L+ T+ +DRE + ++ L +TA D A T V V V D ND++PVF Q YR
Sbjct: 374 G-LIRTAAALDRESMERHYLRVTAQDHGSPRLSATTMVAVTVADRNDHAPVFEQAQYR-- 430
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVA---YKLA-------VPSNLVVIVPQ 168
+L NV ++ I + ATD D A Y+ + I P+
Sbjct: 431 -----ETLRENV---EEGYPILQLRATDGDAPPNANLRYRFVGSPAARTAAAAAFEIDPR 482
Query: 169 TGELLLTGDPPSDDVE-YELTVEAHDL-QSPSRYAREPAQVWLQFNSPVLQDEQLLQMID 226
+G + +G + +E YEL VEA D Q P P ++ + VL D
Sbjct: 483 SGLISTSGRVDREHMESYELVVEASDQGQEPG-----PRSATVRVHITVL---------D 528
Query: 227 RKSEAPHRIEKRRVTRA---VRPTK---RIDFSETDGEMEGRIVFALEKETEREKFKIRD 280
AP EKR V + VRP R+ ++ D + G + + + R F I
Sbjct: 529 ENDNAPQFSEKRYVAQVREDVRPHTVVLRVTATDKDKDANGLVHYNIISGNSRGHFAID- 587
Query: 281 ENPWITVDENGDVRVKKRWDFE 302
G+++V DFE
Sbjct: 588 -------SLTGEIQVMAPLDFE 602
Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 66 SGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKS 124
SG +DRE V Y + A D A VTV VLD NDN P F+ K Y
Sbjct: 702 SGPLDRESVEHYFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHL------- 754
Query: 125 SLNSNVSHWKKFSSIGSVSATDADGDK-VAYKL--AVPSNLVVIVPQTGELLLTGDPPSD 181
LN + + +S+ SV+A D D + ++Y++ N I Q G L+T P D
Sbjct: 755 RLNEDAA---VGTSVVSVTAVDRDANSAISYQITGGNTRNRFAISTQGGMGLVTLALPLD 811
Query: 182 ---DVEYELTVEAHD 193
+ ++L + A D
Sbjct: 812 YKQERYFKLVLTASD 826
Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 68 DIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFS--QKVYRFIVGDLKSS 125
D+D E +Y +V+ AT +++A HV + +D+NDNSPV + Q ++ V + +
Sbjct: 1120 DLDYEARQEYVIVVQATSAPLVSRATVHVRL--VDQNDNSPVLNNFQILFNNYVSNRSDT 1177
Query: 126 LNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPSNL-VVIVPQT-GELLLT 175
S + IG + A D D D + Y + L +++V QT GEL L+
Sbjct: 1178 FPSGI--------IGRIPAYDPDVSDHLFYSFERGNELQLLVVNQTSGELRLS 1222
Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L + K + LV Y+I GN FA+ +S +G + V + +D E
Sbjct: 556 LRVTATDKDKDANGLVHYNIISGNSRGHFAI------------DSLTGEIQVMA-PLDFE 602
Query: 73 EVAQYSLVITATDV--KGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
+Y+L I A D ++ ++ V+D ND+SP+F ++ V + + L +V
Sbjct: 603 AEREYALRIRAQDAGRPPLSNNTGLASIQVVDINDHSPIFVSTPFQVSVLE-NAPLGHSV 661
Query: 131 SHWKKFSSIGSVSATDADGDKVAYKL-AVPSNL-VVIVPQTGELLLTGDPPSDDVE-YEL 187
H I +V A + ++ Y L V S+ VI TG + ++G + VE Y
Sbjct: 662 IH------IQAVDADHGENSRLEYSLTGVASDTPFVINSATGWVSVSGPLDRESVEHYFF 715
Query: 188 TVEAHDLQSP 197
VEA D SP
Sbjct: 716 GVEARDHGSP 725
Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats.
Identities = 59/218 (27%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L I H + V+Y+ G D PT+ +R T +DRE
Sbjct: 972 LQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPTSGIVR------------TVRRLDRE 1019
Query: 73 EVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
V Y L A D +G+ T V++ V D NDN+PVF + + V + NS V
Sbjct: 1020 AVPVYELTAYAVD-RGVPPLRTPVSIQVTVQDVNDNAPVFPAEEFEVRVKE-----NSIV 1073
Query: 131 SHWKKFSSIGSVSATDADGDKVAYKL--AVPSNLVVIVPQ---TGELLLTGDPPSD-DVE 184
S + ++A D D A+ + V N+ + +GEL D + E
Sbjct: 1074 G-----SVVAQITAVDPDDGPNAHIMYQIVEGNIPELFQMDIFSGELTALIDLDYEARQE 1128
Query: 185 YELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLL 222
Y + V+A SR V NSPVL + Q+L
Sbjct: 1129 YVIVVQATSAPLVSRATVHVRLVDQNDNSPVLNNFQIL 1166
Score = 38.1 bits (87), Expect = 0.092, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 69 IDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLN 127
+D E+ Y+L ITA D KA+T +V V V D NDN+P F Y +V +
Sbjct: 910 LDYEDQVTYTLAITARDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTGLVSE------ 963
Query: 128 SNVSHWKKFSSIGSVSATDADG 149
F+S+ +SATD D
Sbjct: 964 ----DAPPFTSVLQISATDRDA 981
Score = 35.8 bits (81), Expect = 0.48, Method: Composition-based stats.
Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 31/202 (15%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E++ GT V + V + + + + Y IT GN + FA+ ST+ G
Sbjct: 758 EDAAVGTSV----VSVTAVDRDANSAISYQITGGNTRNRFAI----------STQGGMG- 802
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
L+ + +D ++ + LV+TA+D + ++ +V +++ D N + PVF Y
Sbjct: 803 LVTLALPLDYKQERYFKLVLTASD-RALHD-HCYVHINITDANTHRPVFQSAHYSV---- 856
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPSNLVVIVPQTGELLLTGDPP- 179
S+N + S++ +SA+D D G+ + NL +T P
Sbjct: 857 ---SMNEDRP---VGSTVVVISASDDDVGENARITYLLEDNLPQFRIDADSGAITLQAPL 910
Query: 180 --SDDVEYELTVEAHDLQSPSR 199
D V Y L + A D P +
Sbjct: 911 DYEDQVTYTLAITARDNGIPQK 932
>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2
Length = 4981
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 84/185 (45%), Gaps = 40/185 (21%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG-VLLVTSGDIDREEVAQYSLVITATD 85
L+ YSI +GN+ FA+ +S SG V L+ G +D E YSLVI A D
Sbjct: 1244 LIHYSIIKGNEERQFAI------------DSTSGQVTLI--GKLDYEATPAYSLVIQAVD 1289
Query: 86 VKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS-IGSVS 143
I T + +D+LDENDN+P F KS+L +V + + SV+
Sbjct: 1290 SGTIPLNSTCTLNIDILDENDNTPSFP-----------KSTLFVDVLENMRIGELVSSVT 1338
Query: 144 ATDAD-GDK--VAYKLAVPSN--LVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDL 194
ATD+D GD + Y + +N I P TG + L D E Y+L + A D
Sbjct: 1339 ATDSDSGDNADLYYSITGTNNHGTFSISPNTGSIFLA---KKLDFETQSLYKLNITAKDQ 1395
Query: 195 QSPSR 199
P R
Sbjct: 1396 GRPPR 1400
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
V+YSI+ G+ + R ++SGV+ T +DREE Y L I ATD
Sbjct: 724 VKYSISAGDRS-------------RFQVNAQSGVI-STRMALDREEKTAYQLQIVATDGG 769
Query: 88 GINKA-ETHVTVDVLDENDNSPVFSQKVYRFI----------VGDLKSS---LNSNVSHW 133
+ + VT+ VLD DN PVFSQ Y F+ VG + +S LNSN+S+
Sbjct: 770 NLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVVFENVALGYHVGSVSASTMDLNSNISYL 829
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
L++YSI+ GN+ FA+ S +G+L + +D E ++ + I+A D
Sbjct: 3123 LIKYSISSGNEEGIFAIN------------SSTGILTLAKA-LDYELCQKHEMTISAIDG 3169
Query: 87 KGINK-AETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
+ + VTV+V+D NDNSPVF Y V + + +++ ++AT
Sbjct: 3170 GWVARTGYCSVTVNVIDVNDNSPVFLSDDYFPTV----------LENAPSGTTVIHLNAT 3219
Query: 146 DADGDK---VAYKL-AVPSNLVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSP 197
DAD +AY + + S+L VI P TG + G D E Y LTV+A ++
Sbjct: 3220 DADSGTNAVIAYTVQSSDSDLFVIDPNTGVITTQG---FLDFETKQSYHLTVKAFNVPDE 3276
Query: 198 SRYAREPAQVWLQ 210
R + + L+
Sbjct: 3277 ERCSFATVNIQLK 3289
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Query: 66 SGDIDREEVAQYSLVITATDVKGINK--AETHVTVDVLDENDNSPVFSQKVYR 116
+G++DREEV+ Y+L + ATD KG + T V V VLD NDN+P+F+Q +Y+
Sbjct: 2109 TGELDREEVSNYTLTVVATD-KGQPSLSSSTEVVVMVLDINDNNPIFAQALYK 2160
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 99/258 (38%), Gaps = 44/258 (17%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ Y IT G+ FA+ T L T+ IDREE + Y L + A+
Sbjct: 826 ISYLITTGDQKGMFAINQVTGQ-------------LTTANVIDREEQSFYQLKVVAS--G 870
Query: 88 GINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
G +T V + V D NDNSP F Q + S+N V +W+ SI A D
Sbjct: 871 GTVTGDTMVNITVKDLNDNSPHFLQAI---------ESVNV-VENWQAGHSIFQAKAVDP 920
Query: 148 D---GDKVAYKLAV-PSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHDLQSPSRYARE 203
D V Y L P NL I + G + L G Y++ + A D+ P +
Sbjct: 921 DEGVNGMVLYSLKQNPKNLFAINEKNGTISLLGPLDVHAGSYQIEILASDMGVPQLSSSV 980
Query: 204 PAQVWLQ---FNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEME 260
V++ NSPV +QL + P + R ++ S+ D
Sbjct: 981 ILTVYVHDVNDNSPVF--DQLSYEVTLSESEP--VNSRFF--------KVQASDKDSGAN 1028
Query: 261 GRIVFALEKETEREKFKI 278
G I + + + + F I
Sbjct: 1029 GEIAYTIAEGNTGDAFGI 1046
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGI 89
Y I +GN+ F L N + + + LV+ G +DRE QY L++ D KG
Sbjct: 174 YRIIRGNEAGRFRLD-----ITLNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVED-KGE 227
Query: 90 NKAETH--VTVDVLDENDNSPVFSQKVYR------FIVGDLKSSLNSNVSHWKKFSSIGS 141
K + V V V D NDN PVF Y+ +VG SS+
Sbjct: 228 PKRRGYLQVNVTVQDINDNPPVFGSSHYQAGVPEDAVVG----------------SSVLQ 271
Query: 142 VSATDAD---GDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQ 195
V+A DAD + Y+L + P+TG L+T P D +Y LTV+A D
Sbjct: 272 VAAADADEGTNADIRYRLQDEGTPFQMDPETG--LITVREPLDFEARRQYSLTVQAMDRG 329
Query: 196 SPSRYAREPAQVWL 209
PS R A + L
Sbjct: 330 VPSLTGRAEALIQL 343
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 31/176 (17%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P+ + Y I GN ++F++ N T EIR+ +DRE+V+ Y L I +
Sbjct: 2699 PNGQLDYEIVNGNMENSFSI-NHATGEIRSVRP------------LDREKVSHYVLTIKS 2745
Query: 84 TDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGS 141
+D KG T V V ++LDENDN+P FSQ ++ V + NS + + ++
Sbjct: 2746 SD-KGSPSQSTSVKVMINILDENDNAPRFSQ-IFSAHVPE-----NSPLGY-----TVTR 2793
Query: 142 VSATDADGDKVA---YKLAVPSNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
V+ +D D A Y + S I P TG+++++ +D + Y + V AHD
Sbjct: 2794 VTTSDEDIGINAISRYSIMDASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD 2849
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 7 GTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTS 66
G G K + + + + + LV Y+I G D+ +F + + +SG L+ T
Sbjct: 1754 GDGSKIMQLTAMDADEGANALVTYTIISGADD-SFRI------------DPESGDLIATR 1800
Query: 67 GDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRF 117
+DRE ++YSL++ A D G+ ++ + + V D ND++P FS+ VY F
Sbjct: 1801 -RLDRERRSKYSLLVRADD--GLQSSDMRINITVSDVNDHTPKFSRPVYSF 1848
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
EN+ +GT + + + A + + VRY I GN N F + +S +G
Sbjct: 2165 ENTLTGTDI--IQVFAADGDEGTNGQVRYGIVNGNTNQEFRI------------DSVTGA 2210
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVY 115
+ V +DRE+ Y L + ATD + +T V++ +LD ND PVF Y
Sbjct: 2211 ITVAK-PLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPY 2264
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAE-THVTVDVLDENDNSPVFSQKVYRFIVGD 121
L T +DREE A YSL++ ATD+ ++ + V +LD NDNSPVF Y
Sbjct: 641 LSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQY------ 694
Query: 122 LKSSLNSNVSHWKK----FSSIGSVSATDAD 148
+H K+ S I +VSATD D
Sbjct: 695 --------FAHIKENEPGGSYITTVSATDPD 717
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ Y + GN+++ F L S SG L VT +DRE ++ L+ITATD
Sbjct: 2295 LSYVLFGGNEDNAFTL-------------SASGELGVTQ-SLDRETKERFVLMITATD-S 2339
Query: 88 GINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
G T++V+ D NDN P F+ K Y + + + + V+A+
Sbjct: 2340 GSPALTGTGTINVIVDDVNDNVPTFASKAYFTTIPE----------DAPTGTDVLLVNAS 2389
Query: 146 DADGDKVAYKLAVPSN-LVVIVPQTGELLLTG--DPPSDDVEYELTVEAHDLQSP 197
DAD K A + N I P TG+++ + D + D Y L V D SP
Sbjct: 2390 DADASKNAVIRIIGGNSQFTINPSTGQIITSALLDRETKD-NYTLVVVCSDAGSP 2443
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 58 KSGVLLVTSGDIDREEVAQYSLVITATD---VKGINKAETHVTVDVLDENDNSPVFSQKV 114
K+G + V SG +DRE+ + SL + A + ++G + E V V VLD ND P+F+ +
Sbjct: 3351 KTGQIYV-SGILDREKEERVSLKVLAKNFGSIRGADIDEVTVNVTVLDAND-PPIFTLNI 3408
Query: 115 YRFIVGD---------LKSSLNSN-VSHWKKFSS-IGSVSATDADGDKVAYKLAVPSNLV 163
Y + + S+ +S+ + W +FS IGS + A
Sbjct: 3409 YSVQISEGVPIGTHVTFVSAFDSDSIPSWSRFSYFIGSGNENGA---------------F 3453
Query: 164 VIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVWLQ---FNSPVL 216
I PQTG++ +T + + + Y L+V A D +PS V L+ N P+L
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPML 3510
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 103/249 (41%), Gaps = 44/249 (17%)
Query: 55 TESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAE----THVTVDVLDENDNSPVF 110
T K+GVL V +DRE + Y+LV+ D+ I + V++ +LD NDN P F
Sbjct: 1993 TVDKNGVLKVLKA-LDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTF 2051
Query: 111 SQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSV----SATDADG---DKVAYKLAVP-SNL 162
L+ +++ + + I +V ATD D + Y L P N
Sbjct: 2052 ---------------LSPKLTYIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNK 2096
Query: 163 VVIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVW---LQFNSPVLQD 218
I GE+ LTG+ ++V Y LTV A D PS + V + N+P+
Sbjct: 2097 FSIGTIDGEVRLTGELDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIF-- 2154
Query: 219 EQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKI 278
++A +++E T ++ ++ D G++ + + ++F+I
Sbjct: 2155 ----------AQALYKVEINENTLTGTDIIQVFAADGDEGTNGQVRYGIVNGNTNQEFRI 2204
Query: 279 RDENPWITV 287
ITV
Sbjct: 2205 DSVTGAITV 2213
Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 118/299 (39%), Gaps = 55/299 (18%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
EN++ GT V L + A S + + I GN+ F E+++S +
Sbjct: 369 ENAQVGTVVALLTVTDADS-PAANGNISVQILGGNEQRHF--------EVQSSKVPNLSL 419
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGI--------NKAETHVTVDVLDENDNSPVFSQK 113
+ V S +DRE + Y+L ++ +D G + + + V D ND+ PVFSQ+
Sbjct: 420 IKVASA-LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQ 478
Query: 114 VYRFIVGDLKSSLNSNVS-HWKKFSSIGSVSATDADGD---KVAYKLAVPSNLVVI-VPQ 168
VYR N+S S + +SATD D + Y + + L + +
Sbjct: 479 VYRV-----------NLSEEAPPGSYVSGISATDGDSGLNANLRYSIVSGNGLGWFHISE 527
Query: 169 TGELLLTGDPPSDDVEYE----LTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLLQM 224
L+ TG D E L + A D P + Q LL +
Sbjct: 528 HSGLVTTGSSGGLDRELASQIVLNISARD------QGVHPKVSYAQLVV------TLLDV 575
Query: 225 IDRKS--EAPHRIEKRRVTRAVRPTKRIDFSETDGEM--EGRIVFAL-EKETEREKFKI 278
D K P + V A T+ + TDG++ G + F+L E ET+R F++
Sbjct: 576 NDEKPVFSQPEGYDVSVVENAPTGTELLMLRATDGDLGDNGTVRFSLQEAETDRRSFRL 634
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 47/275 (17%)
Query: 25 HQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITAT 84
+ + RYSI + T NP+T +I V S ++RE+ +Y + ++A
Sbjct: 2804 NAISRYSIMDASLPFTI---NPSTGDI------------VISRPLNREDTDRYRIRVSAH 2848
Query: 85 DVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSA 144
D T VT+ V D NDN+P FS+ Y +L + + S V+ V A
Sbjct: 2849 DSGW--TVSTDVTIFVTDINDNAPRFSRTSYYLDCPEL-TEIGSKVTQ---------VFA 2896
Query: 145 TDAD---GDKVAYKLAVPSNLVVIVPQTGELL---------LTGDPPSDDVEYELTVEAH 192
TD D +V Y + S I TGE+ +TG + + V +
Sbjct: 2897 TDPDEGSNGQVFYFIKSQSEYFRINATTGEIFNKQILKYQNVTGFSNVNINRHSFIVTSS 2956
Query: 193 DLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDF 252
D PS + + + V ++ Q + K P + T+ +R T ID
Sbjct: 2957 DRGKPSLISETTVTINI-----VDSNDNAPQFLKSKYFTPVTKNVKVGTKLIRVTA-ID- 3009
Query: 253 SETDGEMEGRIVFALEKETEREKFKIRDENPWITV 287
+ D + + + + + KFK+ ++ WI+V
Sbjct: 3010 -DKDFGLNSEVEYFISNDNHLGKFKLDNDTGWISV 3043
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 27/123 (21%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD-- 85
+ Y+I +GN F + G L + S ++DRE +Y L++ A+D
Sbjct: 1031 IAYTIAEGNTGDAFGIF-------------PDGQLYIKS-ELDRELQDRYVLMVVASDRA 1076
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
V+ ++ A +VTV + D NDN P+F+ Y F + + S +G VSA
Sbjct: 1077 VEPLS-ATVNVTVILEDVNDNRPLFNSTNYTFYFEE----------EQRAGSFVGKVSAV 1125
Query: 146 DAD 148
D D
Sbjct: 1126 DKD 1128
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 10/140 (7%)
Query: 73 EVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSH 132
EV QY ++ + G V ++LD NDN P+FS Y +SL N+
Sbjct: 1907 EVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSY-------STSLMENLPV 1959
Query: 133 WKKFSSIGSVSATDADGDKVAYKLAVPSNL-VVIVPQTGEL-LLTGDPPSDDVEYELTVE 190
A D ++ Y +A +L V + G L +L Y L V+
Sbjct: 1960 GSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNGVLKVLKALDRESQSFYNLVVQ 2019
Query: 191 AHDL-QSPSRYAREPAQVWL 209
HDL Q P+ AQV +
Sbjct: 2020 VHDLPQIPASRFTSTAQVSI 2039
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
+V YS+ Q N + FA+ +N T S G L V +G Y + I A+D+
Sbjct: 927 MVLYSLKQ-NPKNLFAINE------KNGTISLLGPLDVHAG--------SYQIEILASDM 971
Query: 87 KGINKAETHV--TVDVLDENDNSPVFSQKVY 115
G+ + + V TV V D NDNSPVF Q Y
Sbjct: 972 -GVPQLSSSVILTVYVHDVNDNSPVFDQLSY 1001
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 81/198 (40%), Gaps = 33/198 (16%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
MEN + GT V L + Y ++ G F+L S +G
Sbjct: 3518 MENKRPGTLVMTLQSTDPDLPPNQGPFTYYLLSTGPATSYFSL-------------STAG 3564
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFI 118
VL T+ +IDRE++A + L + D G+ + + TV V+D+NDN P S+ V F+
Sbjct: 3565 VL-STTREIDREQIADFYLSVVTKD-SGVPQMSSTGTVHITVIDQNDN-PSQSRTVEIFV 3621
Query: 119 --VGDLKSSLNSNVSHWKKFSSIGSVSATDADG-DKVAYKLAVPSNLVVIVPQTGELLLT 175
G+L +GSV D D D L + +P G L
Sbjct: 3622 NYYGNLFPG-----------GILGSVKPQDPDVLDSFHCSLTSGVTSLFSIPG-GTCDLN 3669
Query: 176 GDPPSDDVEYELTVEAHD 193
P S D ++LTV ++D
Sbjct: 3670 SQPRSTDGTFDLTVLSND 3687
>sp|Q9Y5G2|PCDGE_HUMAN Protocadherin gamma-B2 OS=Homo sapiens GN=PCDHGB2 PE=2 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 34/206 (16%)
Query: 55 TESKSGVLLVTSGDIDREEVAQYSLVITATD-VKGINKAETHVTVDVLDENDNSPVFSQK 113
+ SK+ LVT G +DREE+ +Y+L ITATD K + VT+ + D NDN+PVF Q
Sbjct: 396 SSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQT 455
Query: 114 VYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNL-------- 162
Y V + + +SI +SA+D D +V+Y + V S+L
Sbjct: 456 SYMVHVAE----------NNPPGASIAQISASDPDLGPSGQVSYSI-VASDLKPREILSY 504
Query: 163 VVIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVW---LQFNSPVL-- 216
V + Q+G + + + +ELT++A D SP+ A +V L N+P +
Sbjct: 505 VSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLY 564
Query: 217 -----QDEQLLQMIDRKSEAPHRIEK 237
L M+ R +E + + K
Sbjct: 565 PALGPDGSALFDMVPRAAEPGYLVTK 590
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E++K GT P L S P+ L RY + NDN F L T + R E
Sbjct: 144 ESTKPGTTFPLDPAL--DSDVGPNSLQRYHL---NDNEYFDLAEKQTPDGRKYPE----- 193
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDVLDENDNSPVFSQKVYR 116
L+ +DREE + + LV+TA D ++ T + + V D NDN PVFSQ VYR
Sbjct: 194 -LILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYR 248
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSP 108
+ T D+D E + Y+L I A D G A + V++LD+ND +P
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKD-PGDLAAHCSIQVEILDDNDCAP 345
>sp|Q5DRC9|PCDB5_PANTR Protocadherin beta-5 OS=Pan troglodytes GN=PCDHB5 PE=3 SV=1
Length = 795
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT +DRE A+Y++ IT TD+ K E ++TV V D NDN+P F+Q Y V +
Sbjct: 402 LVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE 461
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSN 161
S IGSVSATD D +V Y L P N
Sbjct: 462 NNSPA----------LQIGSVSATDRDSGTNAQVTYSLLPPQN 494
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + SL +TA D ++ T + + VLD NDN+P F Q +Y V +
Sbjct: 194 LVLDKALDREERPELSLTLTALDGGAPPRSGTTTIRIVVLDNNDNAPEFLQSLYEVQVPE 253
Query: 122 LKSSLNSNV----SHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVVIVPQTGELLL 174
S LNS V + + GSV+ GD+V VI +TGE+ L
Sbjct: 254 -NSPLNSLVVVVSARDLDAGAYGSVAYALFQGDEVTQPF-------VIDEKTGEIRL 302
>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus
GN=Celsr3 PE=2 SV=2
Length = 3301
Score = 54.7 bits (130), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 24/153 (15%)
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDV---KGINKAETHVTVDVLDENDNSPVFSQ 112
+ +SG L+ TSG +DRE + Y LV+ A+D G A V + VLDENDN+P FS+
Sbjct: 480 DPRSG-LISTSGRVDREHMESYELVVEASDQGQEPGPRSATVRVHITVLDENDNAPQFSE 538
Query: 113 KVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKLAVPSNL--VVIVP 167
K Y V ++ + + + + V+ATD D D V Y + ++ I
Sbjct: 539 KRY---VAQVREDV-------RPHTVVLRVTATDKDKDANGLVHYNIISGNSRGHFAIDS 588
Query: 168 QTGELLLTGDPPSD---DVEYELTVEAHDLQSP 197
TGE+ + P D + EY L + A D P
Sbjct: 589 LTGEIQVMA--PLDFEAEREYALRIRAQDAGRP 619
Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats.
Identities = 90/322 (27%), Positives = 134/322 (41%), Gaps = 67/322 (20%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVR--YSITQGNDNHTFALKNPTTHEIRNSTESKS 59
EN +GT V + V + P + R YS+ AL N + E+ S + +S
Sbjct: 327 ENEAAGTSV----LRVVAQDPDPGEAGRLIYSLA--------ALMNSRSLELF-SIDPQS 373
Query: 60 GVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFI 118
G L+ T+ +DRE + ++ L +TA D A T V V V D ND++PVF Q YR
Sbjct: 374 G-LIRTAAALDRESMERHYLRVTAQDHGSPRLSATTMVAVTVADRNDHAPVFEQAQYR-- 430
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVA---YKL----AVPSNLVV---IVPQ 168
+L NV ++ I + ATD D A Y+ AV + I P+
Sbjct: 431 -----ETLRENV---EEGYPILQLRATDGDAPPNANLRYRFVGSPAVRTAAAAAFEIDPR 482
Query: 169 TGELLLTGDPPSDDVE-YELTVEAHDL-QSPSRYAREPAQVWLQFNSPVLQDEQLLQMID 226
+G + +G + +E YEL VEA D Q P P ++ + VL D
Sbjct: 483 SGLISTSGRVDREHMESYELVVEASDQGQEPG-----PRSATVRVHITVL---------D 528
Query: 227 RKSEAPHRIEKRRVTRA---VRPTK---RIDFSETDGEMEGRIVFALEKETEREKFKIRD 280
AP EKR V + VRP R+ ++ D + G + + + R F I
Sbjct: 529 ENDNAPQFSEKRYVAQVREDVRPHTVVLRVTATDKDKDANGLVHYNIISGNSRGHFAID- 587
Query: 281 ENPWITVDENGDVRVKKRWDFE 302
G+++V DFE
Sbjct: 588 -------SLTGEIQVMAPLDFE 602
Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 66 SGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKS 124
SG +DRE V Y + A D A VTV VLD NDN P F+ K Y
Sbjct: 702 SGPLDRESVEHYFFGVEARDHGSPPLSASASVTVTVLDVNDNRPEFTMKEYHL------- 754
Query: 125 SLNSNVSHWKKFSSIGSVSATDADGDK-VAYKL--AVPSNLVVIVPQTGELLLTGDPPSD 181
LN + + +S+ SV+A D D + ++Y++ N I Q G L+T P D
Sbjct: 755 RLNEDAA---VGTSVVSVTAVDRDANSAISYQITGGNTRNRFAISTQGGVGLVTLALPLD 811
Query: 182 ---DVEYELTVEAHD 193
+ ++L + A D
Sbjct: 812 YKQERYFKLVLTASD 826
Score = 40.0 bits (92), Expect = 0.022, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 68 DIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFS--QKVYRFIVGDLKSS 125
D+D E +Y +V+ AT +++A HV + +D+NDNSPV + Q ++ V + +
Sbjct: 1120 DLDYEARQEYVIVVQATSAPLVSRATVHVRL--VDQNDNSPVLNNFQILFNNYVSNRSDT 1177
Query: 126 LNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPS--NLVVIVPQTGELLLT 175
S + IG + A D D D + Y + L+V+ +GEL L+
Sbjct: 1178 FPSGI--------IGRIPAYDPDVSDHLFYSFERGNELQLLVVNRTSGELRLS 1222
Score = 39.7 bits (91), Expect = 0.029, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L + K + LV Y+I GN FA+ +S +G + V + +D E
Sbjct: 556 LRVTATDKDKDANGLVHYNIISGNSRGHFAI------------DSLTGEIQVMA-PLDFE 602
Query: 73 EVAQYSLVITATDV--KGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
+Y+L I A D ++ ++ V+D ND++P+F ++ V + + L +V
Sbjct: 603 AEREYALRIRAQDAGRPPLSNNTGLASIQVVDINDHAPIFVSTPFQVSVLE-NAPLGHSV 661
Query: 131 SHWKKFSSIGSVSATDADGDKVAYKL-AVPSNL-VVIVPQTGELLLTGDPPSDDVE-YEL 187
H I +V A + ++ Y L V S+ VI TG + ++G + VE Y
Sbjct: 662 IH------IQAVDADHGENSRLEYSLTGVASDTPFVINSATGWVSVSGPLDRESVEHYFF 715
Query: 188 TVEAHDLQSP 197
VEA D SP
Sbjct: 716 GVEARDHGSP 725
Score = 39.3 bits (90), Expect = 0.044, Method: Composition-based stats.
Identities = 59/218 (27%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 13 LPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE 72
L I H + V+Y+ G D PT+ +R T +DRE
Sbjct: 972 LQISATDRDAHANGRVQYTFQNGEDGDGDFTIEPTSGIVR------------TVRRLDRE 1019
Query: 73 EVAQYSLVITATDVKGINKAETHVTVDVL--DENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
V Y L A D +G+ T V++ V D NDN+PVF + + V + NS V
Sbjct: 1020 AVPVYELTAYAVD-RGVPPLRTPVSIQVTVQDVNDNAPVFPAEEFEVRVKE-----NSIV 1073
Query: 131 SHWKKFSSIGSVSATDADGDKVAYKL--AVPSNLVVIVPQ---TGELLLTGDPPSD-DVE 184
S + ++A D D A+ + V N+ + +GEL D + E
Sbjct: 1074 G-----SVVAQITAVDPDDGPNAHIMYQIVEGNIPELFQMDIFSGELTALIDLDYEARQE 1128
Query: 185 YELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQLL 222
Y + V+A SR V NSPVL + Q+L
Sbjct: 1129 YVIVVQATSAPLVSRATVHVRLVDQNDNSPVLNNFQIL 1166
Score = 38.1 bits (87), Expect = 0.098, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 69 IDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLN 127
+D E+ Y+L ITA D KA+T +V V V D NDN+P F Y +V +
Sbjct: 910 LDYEDQVTYTLAITARDNGIPQKADTTYVEVMVNDVNDNAPQFVASHYTGLVSE------ 963
Query: 128 SNVSHWKKFSSIGSVSATDADG 149
F+S+ +SATD D
Sbjct: 964 ----DAPPFTSVLQISATDRDA 981
Score = 36.6 bits (83), Expect = 0.26, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E++ GT V + V + + + + Y IT GN + FA+ ++ GV
Sbjct: 758 EDAAVGTSV----VSVTAVDRDANSAISYQITGGNTRNRFAI------------STQGGV 801
Query: 62 LLVTSG-DIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
LVT +D ++ + LV+TA+D + ++ +V +++ D N + PVF Y
Sbjct: 802 GLVTLALPLDYKQERYFKLVLTASD-RALHD-HCYVHINITDANTHRPVFQSAHYSV--- 856
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPSNLVVIVPQTGELLLTGDPP 179
S+N + S++ +SA+D D G+ + NL +T P
Sbjct: 857 ----SMNEDRP---VGSTVVVISASDDDVGENARITYLLEDNLPQFRIDADSGAITLQAP 909
Query: 180 ---SDDVEYELTVEAHDLQSPSR 199
D V Y L + A D P +
Sbjct: 910 LDYEDQVTYTLAITARDNGIPQK 932
>sp|Q5DRA9|PCDGE_PANTR Protocadherin gamma-B2 OS=Pan troglodytes GN=PCDHGB2 PE=3 SV=1
Length = 931
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 34/206 (16%)
Query: 55 TESKSGVLLVTSGDIDREEVAQYSLVITATD-VKGINKAETHVTVDVLDENDNSPVFSQK 113
+ SK+ LVT G +DREE+ +Y+L ITATD K + VT+ + D NDN+PVF Q
Sbjct: 396 SSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQT 455
Query: 114 VYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNL-------- 162
Y V + + +SI +SA+D D +V+Y + V S+L
Sbjct: 456 SYMVHVAE----------NNPPGASIAQISASDPDLGPNGQVSYSI-VASDLKPREILSY 504
Query: 163 VVIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVW---LQFNSPVL-- 216
V + Q+G + + + +ELT++A D SP+ A +V L N+P +
Sbjct: 505 VSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLY 564
Query: 217 -----QDEQLLQMIDRKSEAPHRIEK 237
L M+ R +E + + K
Sbjct: 565 PALGSDGSALFDMVPRAAEPGYLVTK 590
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E++K GT P L S P+ L RY + NDN F L T + R E
Sbjct: 144 ESTKPGTTFPLDPAL--DSDVGPNSLQRYHL---NDNEYFDLAEKQTPDGRKYPE----- 193
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDVLDENDNSPVFSQKVYR 116
L+ +DREE + + LV+TA D ++ T + V V D NDN PVFSQ VYR
Sbjct: 194 -LILQHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRVKVTDANDNPPVFSQDVYR 248
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSP 108
+ T D+D E + Y+L I A D G A + V++LD+ND +P
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKD-PGDLAAHCSIQVEILDDNDCAP 345
>sp|P20310|CADHN_XENLA Neural cadherin-1 OS=Xenopus laevis PE=2 SV=1
Length = 905
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E SK GT V + + K P+ ++RY I + T A+ +P I N T G
Sbjct: 279 EGSKPGTYVMTVTAIDGDDPKQPNGMLRYKIL----SQTPAISSPNMFTINNET----GD 330
Query: 62 LLVTSGDIDREEVAQYSLVITATDVK-----GINKAETHVTVDVLDENDNSPVFSQKVY 115
++ + +DRE+V +Y+L+I ATD++ G++ T V + V D NDN P F+ +
Sbjct: 331 IITLAAGLDREKVQRYTLIIQATDMEGNPTYGLSNTATAV-IAVTDVNDNPPEFTAMTF 388
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 28/158 (17%)
Query: 60 GVLLVTSGDIDREEVAQYSLVITATDVKGINKAET--HVTVDVLDENDNSPVFSQKVYRF 117
G L + +DRE++A + L A DV G N+ E + ++V+D NDN P F +++
Sbjct: 217 GGQLSVTKPLDREQIANFHLRAHAVDVNG-NQVENPIDIVINVIDMNDNRPEFLHQIW-- 273
Query: 118 IVGDLKSSLNSNVSHWKKFSS-IGSVSATDADGDK-----VAYKL-----AVPS-NLVVI 165
N ++ K + + +V+A D D K + YK+ A+ S N+ I
Sbjct: 274 ---------NGSIPEGSKPGTYVMTVTAIDGDDPKQPNGMLRYKILSQTPAISSPNMFTI 324
Query: 166 VPQTGELL-LTGDPPSDDVE-YELTVEAHDLQSPSRYA 201
+TG+++ L + V+ Y L ++A D++ Y
Sbjct: 325 NNETGDIITLAAGLDREKVQRYTLIIQATDMEGNPTYG 362
>sp|Q9Y5E9|PCDBE_HUMAN Protocadherin beta-14 OS=Homo sapiens GN=PCDHB14 PE=2 SV=1
Length = 798
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 32 ITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN- 90
I DN F LK PT K+ LV+ +DRE A+Y++ IT TD+
Sbjct: 382 ICSIQDNLPFFLK-PTF---------KNFFTLVSEKALDRESQAEYNITITVTDLGTPRL 431
Query: 91 KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD 150
K E ++TV + D NDN+P F+Q Y V + NS H IGSVSATD D
Sbjct: 432 KTEYNITVLLSDVNDNAPTFTQTSYTLFVRE----NNSPALH------IGSVSATDRDSG 481
Query: 151 ---KVAYKLAVP-------SNLVVIVPQTGELLLTGDPPSDDV-EYELTVEAHDLQSPS 198
+V Y L P ++LV I G L + + E+E V A D SP+
Sbjct: 482 TNAQVNYSLLPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPA 540
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 45 NPTTH---EIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDV 100
+P +H +I +S++ K LV +D E+ A+ L +TA D K+ T V + V
Sbjct: 173 SPNSHFYIKIPDSSDRKIYPELVLDRALDYEQEAELRLTLTAVDGGSPPKSGTTLVLIKV 232
Query: 101 LDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAYKL 156
LD NDN+P F Q +Y V + + + W I ++SA D D K++Y
Sbjct: 233 LDINDNAPEFPQSLYEVQVPE-----DRPLGSW-----IATISAKDLDAGNYGKISYTF 281
>sp|Q9Y5E5|PCDB4_HUMAN Protocadherin beta-4 OS=Homo sapiens GN=PCDHB4 PE=2 SV=1
Length = 795
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 37 DNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN-KAETH 95
DN F LK PT K+ LVT +DRE A+Y++ I TD+ K + +
Sbjct: 386 DNLPFILK-PTL---------KNFYTLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQN 435
Query: 96 VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KV 152
+TV V D NDN+P F+Q Y V + NS H IGSVSATD D +V
Sbjct: 436 ITVQVSDVNDNAPAFTQTSYTLFVRE----NNSPALH------IGSVSATDRDSGTNAQV 485
Query: 153 AYKLAVP-------SNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPS 198
Y L P ++LV I G L + ++ +E V A D SP+
Sbjct: 486 TYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPA 539
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 1 MENSKSGTGVKGLPILVASSHK-HPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKS 59
+ENS+ GT P+L+A + L +Y+I+ + H RN +E K
Sbjct: 142 LENSQPGTL---FPLLIAEDLDVGSNGLQKYTISPNSHFHILT---------RNHSEGKK 189
Query: 60 GVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVY 115
LV +DREE ++SL + A D ++ T V + ++D NDN+P F Y
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPY 246
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Query: 28 VRYSITQGND--NHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
V Y + Q +D TF++ N T EI + +D E++ Y + I ATD
Sbjct: 276 VSYGLFQASDEIKQTFSI-NEVTGEI------------LLKKKLDFEKIKSYHVEIEATD 322
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
G++ T V ++V+D NDN P I+ L SS+ N + SI +
Sbjct: 323 GGGLSGKGT-VVIEVVDVNDNPP-------ELIISSLTSSIPENAP--ETVVSIFRIRDR 372
Query: 146 DADGDKVAYKLAVPSNLVVIVPQTGE--LLLTGDPPSD---DVEYELTVEAHDLQSP 197
D+ G+ ++P NL I+ T + L + P D EY +T+ DL +P
Sbjct: 373 DS-GENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITIAVTDLGTP 428
>sp|P22223|CADH3_HUMAN Cadherin-3 OS=Homo sapiens GN=CDH3 PE=1 SV=2
Length = 829
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
+V YSI H+ K+P H++ + +G + V S +DRE+V +Y+L I ATD+
Sbjct: 252 VVAYSI------HSQEPKDP--HDLMFTIHRSTGTISVISSGLDREKVPEYTLTIQATDM 303
Query: 87 KGINKAETHVT-VDVLDENDNSPVFSQKVY 115
G T V V++LD NDN+P+F + Y
Sbjct: 304 DGDGSTTTAVAVVEILDANDNAPMFDPQKY 333
Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAE-THVTVDVLDENDNSPVFSQ 112
+ E ++G LL+ +DREE+A+Y L A G + + ++++ V D+ND+ P F+Q
Sbjct: 159 AVEKETGWLLLNK-PLDREEIAKYELFGHAVSENGASVEDPMNISIIVTDQNDHKPKFTQ 217
Query: 113 KVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAV 158
+R V L+ L +S+ V+ATD D Y V
Sbjct: 218 DTFRGSV--LEGVLPG--------TSVMQVTATDEDDAIYTYNGVV 253
>sp|Q9Y5E6|PCDB3_HUMAN Protocadherin beta-3 OS=Homo sapiens GN=PCDHB3 PE=2 SV=1
Length = 796
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV+ G +DRE ++Y++ IT TD+ K + ++TV V D NDN+P F+Q Y V +
Sbjct: 403 LVSEGALDRETRSEYNITITITDLGTPRLKTKYNITVLVSDVNDNAPAFTQISYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P S+LV I G
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLSSLVSINADNGH 512
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 513 LFALRSLDYEALQAFEFRVGATDRGSPA 540
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + SL +TA D ++ T + + VLD NDN+P F+Q +Y V +
Sbjct: 194 LVLDKALDREEQPELSLTLTALDGGSPPRSGTAQINIQVLDINDNAPEFAQPLYEVAVLE 253
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDAD 148
N+ V+ S I +VSA+D D
Sbjct: 254 -----NTPVN-----SVIVTVSASDLD 270
>sp|Q5DRD6|PCDBD_PANTR Protocadherin beta-13 OS=Pan troglodytes GN=PCDHB13 PE=3 SV=1
Length = 798
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKG-INKAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
L+T +DRE A+Y++ IT TD+ + K + ++TV + D NDN+P F+Q Y V +
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLKTQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 463 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLTSLVSINADNGH 512
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 513 LFALRSLDYEALQGFEFRVGASDHGSPA 540
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE A+ L +TA D ++ T V ++VLD NDN+P F Q YR
Sbjct: 195 LVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYR----- 249
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAVPSNLV----VIVPQTGELLL 174
++ S +S V + VSATD D +++Y L S + I P TGE+ L
Sbjct: 250 VQISEDSPVGFL-----VVKVSATDVDTGVNGEISYSLFQASEEIGKTFKINPLTGEIEL 304
Query: 175 TGDPPSDDVE-YELTVEAHD 193
+ ++ YE+ +EA D
Sbjct: 305 KKQLDFEKLQSYEVNIEARD 324
>sp|Q5DRF1|PCDAD_PANTR Protocadherin alpha-13 OS=Pan troglodytes GN=PCDHA13 PE=3 SV=1
Length = 950
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 22/157 (14%)
Query: 48 THEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD-VKGINKAETHVTVDVLDENDN 106
T + +NS E S + LV +DREE+ ++SL++TA+D K + + +LD NDN
Sbjct: 179 TLDAQNSLEQMSSLSLVLRKTLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDN 238
Query: 107 SPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD----GDKVAYKLAVPSNL 162
+P F Q VY+ V L+++ N + + ++ATD D GD + Y P +
Sbjct: 239 APEFYQSVYKVTV--LENAFNGTL--------VIKLNATDPDDGTNGD-IVYSFRRPVSP 287
Query: 163 VVIV-----PQTGELLLTGDPPSDDVE-YELTVEAHD 193
V+ P GE+ G ++ + YE++VEA D
Sbjct: 288 AVVYAFTINPNNGEIRTKGKLDFEEKKLYEISVEAVD 324
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINK-AETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DRE V+ Y LV+TA D + A V+V V D NDN+P F+Q Y V +
Sbjct: 407 LVLDSALDRESVSAYELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKE 466
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKL 156
N H I +VSA DAD + V+Y L
Sbjct: 467 ----NNPPGCH------IFTVSAQDADAQENALVSYSL 494
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 45 NPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVT--VDVLD 102
NP EIR T G +D EE Y + + A D KG H T V+VLD
Sbjct: 296 NPNNGEIR------------TKGKLDFEEKKLYEISVEAVD-KGNIPMAGHCTLLVEVLD 342
Query: 103 ENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSS-IGSVSATDADG---DKVAYKLA- 157
NDN+P + +SL+ + + S+ I +S +D D +V L
Sbjct: 343 VNDNAPEVT-----------ITSLSLPIREDTQPSAIIALISVSDRDSGSNGQVTCTLTP 391
Query: 158 -VPSNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYA 201
VP LV L+L + V YEL V A D SPS +A
Sbjct: 392 HVPFKLVSTYKNYYSLVLDSALDRESVSAYELVVTARDGGSPSLWA 437
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 58 KSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET--HVTVDVLDENDNSPVFSQKVY 115
++G+L V S IDREE+ S + +++ HV V V D NDN P+F +
Sbjct: 80 QNGILFVNS-RIDREELCGRSAECSVHLEVIVDRPLQVFHVEVKVRDINDNPPIFPESKK 138
Query: 116 RFIVGD 121
R IV +
Sbjct: 139 RIIVAE 144
>sp|Q63418|PCDH3_RAT Protocadherin-3 OS=Rattus norvegicus GN=Pcdh3 PE=2 SV=1
Length = 797
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 14/101 (13%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIVGD 121
LVT G +DRE A+Y++ IT +D+ H +TV V D NDN+P F+Q Y V +
Sbjct: 402 LVTEGPLDRENRAEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPAFTQTSYTMFVHE 461
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKLAVP 159
NS H IG++SATD+D + Y L P
Sbjct: 462 ----NNSPALH------IGTISATDSDSGSNAHITYSLLPP 492
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKA-ETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV +DREE + +L++TA D +++ T V ++V+D NDNSP F Q +Y+ V +
Sbjct: 194 LVLDRALDREEQPELTLILTALDGGAPSRSGTTTVHIEVVDINDNSPQFVQSLYKVQVPE 253
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADG---DKVAYKL 156
+ LN+ V +VSATD D V Y L
Sbjct: 254 -NNPLNAFVV---------TVSATDLDAGVYGNVTYSL 281
>sp|Q5DRD8|PCDBB_PANTR Protocadherin beta-11 OS=Pan troglodytes GN=PCDHB11 PE=3 SV=1
Length = 797
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 69/143 (48%), Gaps = 24/143 (16%)
Query: 69 IDREEVAQYSLVITATDVKGIN--KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+DRE A+Y++ IT TD+ GI K E + TV V D NDN+P F+Q Y V S
Sbjct: 409 LDRESTAEYNITITVTDL-GIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFV----SEN 463
Query: 127 NSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGELLLTG 176
NS H IGSVSATD D +V Y L P ++LV I G L
Sbjct: 464 NSPALH------IGSVSATDRDSGTNAQVNYSLLPPQDPHLPLASLVSINADNGHLFALR 517
Query: 177 DPPSDDVE-YELTVEAHDLQSPS 198
+ ++ +E V A D SP+
Sbjct: 518 SLDYEALQAFEFRVGATDRGSPA 540
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIV-- 119
LV +D EE+ + S ++TA D ++ T V V V+D NDNSP F Q Y +
Sbjct: 194 LVLDKALDYEELPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKIPE 253
Query: 120 GDLKSSLNSNVSHW 133
+ SL VS W
Sbjct: 254 NSILGSLILTVSAW 267
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 48 THEIRNSTE--SKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDEND 105
+ +IR + E KSG + +T+ +D E + YS++I ATD G+ T V + V+D ND
Sbjct: 285 SEDIRKTFEINQKSGDITLTA-PLDFETIESYSIIIQATDRGGLFGKST-VRIQVIDVND 342
Query: 106 NSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAYKLAVPSNLVV 164
N+P + SS+ S + + + S D D GD ++P +L
Sbjct: 343 NAPEIT-----------VSSITSPIPENTPETVVMVFSIQDIDSGDNGRIVCSIPEDLPF 391
Query: 165 IVPQTGE--LLLTGDPPSD---DVEYELTVEAHDLQSP 197
++ + E L + P D EY +T+ DL P
Sbjct: 392 VLKSSVENYYTLETERPLDRESTAEYNITITVTDLGIP 429
>sp|O88277|FAT2_RAT Protocadherin Fat 2 OS=Rattus norvegicus GN=Fat2 PE=1 SV=1
Length = 4351
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHE---IRNSTESK 58
ENS T V+ P+ + PH +V+Y I G+ F + +R T+S
Sbjct: 44 ENSAPKTYVES-PVKMGMYLAEPHWVVKYRIISGDAAGVFKTEEHVVGNFCFLRIRTKSS 102
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFI 118
+ LL +RE Y+L++ A+D +A T V V +LD+ND P+FS YR
Sbjct: 103 NTALL------NREVRDSYTLIVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRVT 156
Query: 119 VGD---LKSSLNSNVSHWKKFSSIGSVSATDADGDKVA---YKLAVPSNLVVIVPQTGEL 172
+ + LK S I V+ATDAD + A Y S + I P +G +
Sbjct: 157 ISEDRPLK-------------SPICKVTATDADLGQNAEFYYAFNARSEVFAIHPTSGVV 203
Query: 173 LLTG 176
+ G
Sbjct: 204 TVAG 207
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 12 GLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDR 71
G PIL+ S+ V Y + +GN + F++ S SG L+ T +D
Sbjct: 1676 GSPILLLSAGSSSE--VTYELREGNKDSVFSMN------------SYSG-LISTQKRLDH 1720
Query: 72 EEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVS 131
E+V Y L I +++ G+ E V ++DENDN P F + + +G + + +
Sbjct: 1721 EKVPSYRLRIRGSNMAGV-FTEVVALVYIIDENDNPPAFGKPTF---LGHISEAAPLHSL 1776
Query: 132 HWKKFSSIGSVSATDADGDK---VAYKLAVPSNL--VVIVPQTGELLLTGDPPSDDVE-Y 185
+ +S V A+D+D + + YK+ P L I P G L T + +D +
Sbjct: 1777 ILGEDNSPLVVRASDSDREANSLLVYKILEPEALKFFKIDPSMGTLTTTSELDFEDTPLF 1836
Query: 186 ELTVEAHDLQSPSRYAREPAQVWLQF----NSPVLQDEQLLQM 224
+ + HD +P +A A+V + +SP EQ+ ++
Sbjct: 1837 QFNIYVHDQGTPILFAPRSAKVIIHVRDVNDSPPRFSEQIYEV 1879
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 25 HQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITAT 84
H + Y I+ GN+ F + E ++G+L+V + +D E + Y L +T
Sbjct: 747 HGKLVYVISDGNEEGCFDI------------ELETGLLMVAAA-LDYETTSFYVLNVTVY 793
Query: 85 DVKGINKAE-THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVS 143
D+ K+ +TV V D NDN P RF G + +++ + + + +
Sbjct: 794 DLGTPPKSSWKLLTVTVKDWNDNPP-------RFPPGGYQLTISEDTEVGTTIAELKTED 846
Query: 144 ATDADGDKVAYKLAVPSNLVVIVPQTGELLLTGDPPSD-DVEYELTVEAHD 193
A D +V Y L P+ + P TGEL++TG + + +Y L EA D
Sbjct: 847 ADSEDNRRVRYTLLTPTEKFSLHPFTGELVVTGHLDRESESQYILKAEARD 897
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 90/199 (45%), Gaps = 31/199 (15%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
+EN++ G V L L A Q+ Y IT+G+ F++ E R S+
Sbjct: 2918 VENNEPGELVATLKTLDADVSDQNRQVTCY-ITEGDPLGQFSISQ-VGDEWRISSRKT-- 2973
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVG 120
+DRE +A+Y L +TA+D G +A V V V+D NDNSP SQ +Y G
Sbjct: 2974 --------LDREHIAKYLLRVTASD--GKFQASVPVEVFVVDINDNSPQCSQLLY---TG 3020
Query: 121 DLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-SNLVVIVPQTGEL--LL 174
++ + H+ I VSA D D D ++ Y L P + + P TGEL L
Sbjct: 3021 KVREDVTPG--HF-----ILKVSAIDVDMDTNAQITYSLHGPGAQEFKLDPHTGELTTLT 3073
Query: 175 TGDPPSDDVEYELTVEAHD 193
D DV Y L +A D
Sbjct: 3074 VLDRERKDV-YNLVAKATD 3091
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 41/186 (22%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+RYS+ + N F L +++G L+ T+ +D E QY L + +
Sbjct: 393 LRYSLKPSSRNTAFKLN------------ARTG-LITTTKLVDFHEQNQYQLHVKTS--- 436
Query: 88 GINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
+ +A T V +D++D N+++PVF++ Y + +L+ N+ +S+ +V+ATD
Sbjct: 437 -LGQATTTVIIDIVDCNNHAPVFNRSSY-------EGTLDENI---PPGTSVLTVTATDQ 485
Query: 148 D-GDK--VAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELT-------VEAHDLQSP 197
D GD + Y +A P VP + + LL + ++YEL V A D SP
Sbjct: 486 DHGDNGHITYSIAGPK----AVPFSIDPLLGVISTTKPMDYELMKRIYTFRVRASDWGSP 541
Query: 198 SRYARE 203
R +E
Sbjct: 542 FRQEKE 547
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQK 113
+T+ K+GVL VT G +D E ++ + ATD + +E V V V D NDN P FSQ
Sbjct: 2217 TTDFKTGVLTVT-GPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQL 2275
Query: 114 VY 115
VY
Sbjct: 2276 VY 2277
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQK------- 113
LL T+ +DRE +Y L +T D + ++ + V V +LD NDN P+FS K
Sbjct: 1193 LLTTAKQLDRENKDEYVLEVTVQDNGDPSLRSTSRVVVCILDVNDNPPMFSHKLFNVRLS 1252
Query: 114 ----------VYRFIVGDLKSSLNSNVSH 132
VYR + D LN +V++
Sbjct: 1253 ERLSPLSPEPVYRLVASDPDEGLNGSVTY 1281
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 36 NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETH 95
N T++L P E + + L T +DRE Y+LV ATD G +
Sbjct: 3045 NAQITYSLHGPGAQEFKLDPHTGE---LTTLTVLDRERKDVYNLVAKATDGGG-QSCQAE 3100
Query: 96 VTVDVLDENDNSPVF 110
VT+ + D NDN+P F
Sbjct: 3101 VTLHIEDVNDNAPRF 3115
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ YS+ GN F + NP K G L V +D E+ YSL + ATD
Sbjct: 3358 ITYSLVGGNQLGHFTI-NP-----------KKGKLQVAKA-LDWEQTPSYSLRLRATDSG 3404
Query: 88 GINKAE-THVTVDVLDENDNSPVFSQKVY 115
E T V V+V+D NDN P F Q Y
Sbjct: 3405 QPPLHEDTEVAVEVVDVNDNPPRFFQLNY 3433
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 36 NDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINK-AET 94
ND ++ L N T ++ + ES +GVL G DRE+ + + + D + + A+
Sbjct: 1998 NDTLSYFLLNGT--DLFHMIES-AGVLQTRGGTFDREQQDTHEVAVEVRDNRVPQRVAQA 2054
Query: 95 HVTVDVLDENDNSPVFSQKVYRFIVGD 121
V V V D NDN P F Y ++ D
Sbjct: 2055 LVRVSVEDVNDNIPEFQHLPYYTVIQD 2081
>sp|Q96TA0|PCDBI_HUMAN Putative protocadherin beta-18 OS=Homo sapiens GN=PCDHB18 PE=5 SV=1
Length = 734
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 31 SITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN 90
++ DN F LK PT K+ LVT +DRE +Y++ IT TD+
Sbjct: 328 TVCSIQDNLPFVLK-PTF---------KNFYALVTEHPLDREVRNEYNITITVTDLGTPR 377
Query: 91 -KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADG 149
K E ++TV V D NDN+P+F+Q Y V + NS H IGSVSATD D
Sbjct: 378 LKTEHNITVLVSDVNDNAPIFTQTSYTLFVRE----NNSPALH------IGSVSATDRDS 427
Query: 150 D---KVAYKLAVPSN 161
+V Y L P +
Sbjct: 428 GTNAQVTYSLLPPQD 442
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 35 GNDNHTFALKNPTTH-EIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKA- 92
G N+T + NP H ++R+S E + LV +DRE+V+++SL +TA D ++
Sbjct: 112 GVQNYTIS-PNPHFHLKLRDSDEGRKYPELVLDQSLDREKVSEFSLTLTAVDGGSPPRSG 170
Query: 93 ETHVTVDVLDENDNSPVFSQKVY 115
T + V VLD +DN+P F + VY
Sbjct: 171 TTLINVVVLDISDNAPEFEKPVY 193
>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
Length = 1975
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 65/258 (25%)
Query: 3 NSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVL 62
N SG VK I AS KH + Y + GN++ F + T
Sbjct: 1443 NENSGRDVKIGHIQAASRSKHNRDIFYYMLL-GNEDGAFYVDKLTGD------------- 1488
Query: 63 LVTSGDIDREEVAQYSLVITAT---------------DVKGINKAET--HVTVDVLDEND 105
+ T+ +DREE Y+L I A+ +K +N+ T V + VLD ND
Sbjct: 1489 IYTNKSLDREETDVYTLYILASIKADLHISEEERASFSIKTLNRDNTVAKVAITVLDVND 1548
Query: 106 NSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVA-----------Y 154
N PVF + +Y + +N+N K ++I V+ATDAD K A Y
Sbjct: 1549 NPPVFEKPIYY-------AGVNANA---KMGAAITLVNATDADQGKNAKIEFMIVASNLY 1598
Query: 155 KLAVPSNLVVIVPQTGELLLTGDPPSDDV-------EYELTVEAHDLQSPSRYAREPAQV 207
K + IVP + G ++ + +EL + A +L+ P A +
Sbjct: 1599 KFGATKSTGSIVPSPFAISQDGRISANTIMAEYNQDRFELEIVARELEQPQSSASTKVNI 1658
Query: 208 WLQFNSPVLQDEQLLQMI 225
W V QL+++I
Sbjct: 1659 W------VFDGTQLVRVI 1670
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 19/152 (12%)
Query: 54 STESKSG-VLLVTSGDIDREEVAQYSLVITATDVK--GINKAETH-VTVDVLDENDNSPV 109
S ++ +G V++ S +DRE++ + +L + A D + K+ T + +++LD NDN+PV
Sbjct: 1151 SIDAYTGNVMVANSSILDREQIKELTLSVVAQDKAPAAVQKSATATIHINILDVNDNAPV 1210
Query: 110 FSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD----GDKVAYKLAVPS--NLV 163
F++ VY S++ N + ++ +++ V A D D GD V Y + + L
Sbjct: 1211 FTRDVY-------NSTVAENAA-YQPPAALLQVQAIDQDEGLYGD-VRYIITAGNEMGLF 1261
Query: 164 VIVPQTGELLLTGDPPSDDVEYELTVEAHDLQ 195
+ Q+G + YELT+ A D Q
Sbjct: 1262 KLDAQSGIVYPAQSLSGKHGAYELTISARDTQ 1293
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 64 VTSGDIDREEVAQYSLVITA----TDVKGINKAETHVTVDVLDENDNSPVFSQKVY 115
V +G +D E Q ++ TD + +TV VLD NDN PVF Q+ Y
Sbjct: 422 VANGTLDYENPNQRKFIVLVVAEETDTNPRLSSTATITVSVLDANDNKPVFEQESY 477
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINK--AETHVTVDVLDENDNSPVFSQKVYRFIV 119
++ T +D E V + +T +D G+ A V VD+++ NDN P FSQ Y F V
Sbjct: 1054 MIYTIARLDYEVVKEVKFQVTVSDT-GVPALTATADVVVDIINLNDNDPKFSQSDYYFNV 1112
>sp|Q9Y5E7|PCDB2_HUMAN Protocadherin beta-2 OS=Homo sapiens GN=PCDHB2 PE=1 SV=1
Length = 798
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 70/148 (47%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV S +DRE ++Y++ IT TD K E ++TV V D NDN+P F+Q Y V +
Sbjct: 405 LVISTALDRETRSEYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE 464
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 465 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGH 514
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 515 LFALQSLDYEALQAFEFRVGAADRGSPA 542
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 45 NPTTHEIRNSTESKSGVLL---VTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDV 100
+P H N +S G++L V + +DREE + L +TA D ++ T V ++V
Sbjct: 175 SPNFHFHLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEV 234
Query: 101 LDENDNSPVFSQKVY 115
+D NDN P F++ +Y
Sbjct: 235 VDINDNVPEFAKLLY 249
>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=PCDHGB1 PE=2 SV=1
Length = 927
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 22/171 (12%)
Query: 34 QGNDNHTFALKNPTTHEIRNSTESKSGV---LLVTSGDIDREEVAQYSLVITATDVKGIN 90
+GN + + NP + ++ ES G +L+ +DRE + + L++TA D
Sbjct: 160 EGNSLKLYTI-NPNQYFSLSTKESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPP 218
Query: 91 -KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD- 148
TH+ + V D NDN+PVFSQ+VYR SL NV W +S+ V ATD D
Sbjct: 219 LSGTTHIWIRVTDANDNAPVFSQEVYRV-------SLQENVP-WG--TSVLRVMATDQDE 268
Query: 149 --GDKVAYKL---AVPSNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
++ Y + ++L + P TG++ G ++ Y L+VEA D
Sbjct: 269 GINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKD 319
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 32/205 (15%)
Query: 55 TESKSGVLLVTSGDIDREEVAQYSLVITATDV-KGINKAETHVTVDVLDENDNSPVFSQK 113
+ SK+ LV +G ++RE+ A Y++ I ATD K + T +T+ + D NDN+PVF Q
Sbjct: 392 STSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQA 451
Query: 114 VYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAV----PSNL---V 163
Y V + + +SI VSA+D D +V+Y + P L V
Sbjct: 452 SYVVHVSE----------NNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRELLSYV 501
Query: 164 VIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVW---LQFNSP-VL-- 216
+ PQ+G + + + +ELT++A D SP+ A +V L N+P VL
Sbjct: 502 SVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYP 561
Query: 217 ----QDEQLLQMIDRKSEAPHRIEK 237
L M+ R +E + + K
Sbjct: 562 ALGPDGSALFDMVPRAAEPGYLVTK 586
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSP 108
+ T+G +D EE ++Y L + A D G++ A +V ++++DENDN+P
Sbjct: 297 ITTNGTLDFEETSRYVLSVEAKD-GGVHTAHCNVQIEIVDENDNAP 341
>sp|Q5DRD2|PCDB2_PANTR Protocadherin beta-2 OS=Pan troglodytes GN=PCDHB2 PE=3 SV=1
Length = 798
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 70/148 (47%), Gaps = 22/148 (14%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGIN-KAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LV S +DRE ++Y++ IT TD K E ++TV V D NDN+P F+Q Y V +
Sbjct: 405 LVISTALDRETRSEYNITITVTDFGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLFVRE 464
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVP-------SNLVVIVPQTGE 171
NS H IGSVSATD D +V Y L P ++LV I G
Sbjct: 465 ----NNSPALH------IGSVSATDRDSGTNAQVTYSLLPPQDPHLPLASLVSINADNGH 514
Query: 172 LLLTGDPPSDDVE-YELTVEAHDLQSPS 198
L + ++ +E V A D SP+
Sbjct: 515 LFALQSLDYEALQAFEFRVGAADRGSPA 542
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 45 NPTTHEIRNSTESKSGVLL---VTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDV 100
+P H N +S G++L V + +DREE + L +TA D ++ T V ++V
Sbjct: 175 SPNFHFHLNLQDSLDGIILPQLVLNRALDREEQPEIRLTLTALDGGSPPRSGTALVRIEV 234
Query: 101 LDENDNSPVFSQKVY 115
+D NDN P F++ +Y
Sbjct: 235 VDINDNVPEFAKLLY 249
>sp|Q9Y5F2|PCDBB_HUMAN Protocadherin beta-11 OS=Homo sapiens GN=PCDHB11 PE=2 SV=1
Length = 797
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 53/99 (53%), Gaps = 16/99 (16%)
Query: 69 IDREEVAQYSLVITATDVKGIN--KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSL 126
+DRE A+Y++ IT TD+ GI K E + TV V D NDN+P F+Q Y V +
Sbjct: 409 LDRESTAEYNITITVTDL-GIPRLKTEHNTTVLVSDVNDNAPTFTQTSYTLFVRE----N 463
Query: 127 NSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSNL 162
NS H IGSVSATD D +V Y L P +L
Sbjct: 464 NSPALH------IGSVSATDRDSGTNAQVNYSLLPPQDL 496
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 33 TQGNDNHTFALKNPTTHEIRNSTE--SKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN 90
T G +TF+ + +IR + E KSG + + + +D E + YS++I ATD G+
Sbjct: 273 TNGEICYTFS---HASEDIRKTFEINQKSGEITLRA-PLDFETIESYSIIIQATDGGGLF 328
Query: 91 KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-G 149
T V + V+D NDN+P + SS+ S + + + S D D G
Sbjct: 329 GKST-VIIHVIDVNDNAPEIT-----------VSSITSPIPENTPETVVMVFSIQDIDSG 376
Query: 150 DKVAYKLAVPSNLVVIVPQTGE--LLLTGDPPSD---DVEYELTVEAHDLQSP 197
D ++P +L ++ + E L + P D EY +T+ DL P
Sbjct: 377 DNGRIVCSIPEDLPFVLKSSVENYYTLETERPLDRESTAEYNITITVTDLGIP 429
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETH-VTVDVLDENDNSPVFSQKVYRFIV-- 119
LV +D EE+ + S +++A D ++ T V V V+D NDNSP F Q Y +
Sbjct: 194 LVLDKALDYEELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYEVKIRE 253
Query: 120 GDLKSSLNSNVSHW 133
+ SL VS W
Sbjct: 254 NSILGSLILIVSAW 267
>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes GN=PCDHGB1 PE=3 SV=1
Length = 927
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 55 TESKSGVLLVTSGDIDREEVAQYSLVITATDV-KGINKAETHVTVDVLDENDNSPVFSQK 113
+ SK+ LV +G ++RE+ A Y++ I ATD K + T +T+ + D NDN+PVF Q
Sbjct: 392 STSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQA 451
Query: 114 VYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD---GDKVAYKLAV----PSNL---V 163
Y V + + +SI VSA+D D +V+Y + P L V
Sbjct: 452 SYVVHVSE----------NNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRELLSYV 501
Query: 164 VIVPQTGELLLTGDPPSDDVE-YELTVEAHDLQSPSRYAREPAQVW---LQFNSPVL--- 216
+ PQ+G + + + +ELT++A D SP+ A +V L N+P +
Sbjct: 502 SVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYP 561
Query: 217 ----QDEQLLQMIDRKSEAPHRIEK 237
L M+ R +E + + K
Sbjct: 562 ALGPDGSALFDMVPRAAEPGYLVTK 586
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 34 QGNDNHTFALKNPTTHEIRNSTESKSGVL---LVTSGDIDREEVAQYSLVITATDVKGIN 90
+GN + + NP + ++ ES G L+ +DRE + + L++TA D
Sbjct: 160 EGNSLKLYTI-NPNQYFSLSTKESPDGSKYPELLLEKPLDREHQSSHRLILTAMDGGDPP 218
Query: 91 -KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD- 148
TH+ + V D NDN+PVFSQ+VYR SL NV W +S+ V ATD D
Sbjct: 219 LSGTTHIWIRVTDANDNAPVFSQEVYRV-------SLQENVP-WG--TSVLRVMATDQDE 268
Query: 149 --GDKVAYKL---AVPSNLVVIVPQTGELLLTGDPPSDDVE-YELTVEAHD 193
++ Y + ++L + P TG++ G ++ Y L+VEA D
Sbjct: 269 GINAEITYAFLNSPISTSLFNLNPNTGDITTNGTLDFEETSRYVLSVEAKD 319
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSP 108
+ T+G +D EE ++Y L + A D G++ A +V ++++DENDN+P
Sbjct: 297 ITTNGTLDFEETSRYVLSVEAKD-GGVHTAHCNVQIEIVDENDNAP 341
>sp|P33147|CADHO_XENLA Neural cadherin-2 OS=Xenopus laevis PE=2 SV=1
Length = 906
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E SK GT V + + K P+ ++RY I + T A +P I N T G
Sbjct: 279 EGSKPGTYVMTVTAIDGDDPKQPNGMLRYKIL----SQTPASSSPNMFTINNET----GD 330
Query: 62 LLVTSGDIDREEVAQYSLVITATDVK-----GINKAETHVTVDVLDENDNSPVFSQKVY 115
++ + +DRE+V +Y+L+I ATD++ G++ T V + V D NDN P F+ +
Sbjct: 331 IITLAAGLDREKVQRYTLIIQATDMEGNPTYGLSNTATAV-IAVTDVNDNPPEFTAMTF 388
Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 27/158 (17%)
Query: 59 SGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET--HVTVDVLDENDNSPVFSQKVYR 116
SG L VT +DRE++A + L A DV G N+ E + ++V+D NDN P F +++
Sbjct: 217 SGQLSVTK-PLDREQIATFHLRAHAVDVNG-NQVENPIDIVINVIDMNDNRPEFLHQIWN 274
Query: 117 FIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDK-----VAYKL------AVPSNLVVI 165
+ + K + + +V+A D D K + YK+ + N+ I
Sbjct: 275 GTIPEGS----------KPGTYVMTVTAIDGDDPKQPNGMLRYKILSQTPASSSPNMFTI 324
Query: 166 VPQTGELL-LTGDPPSDDVE-YELTVEAHDLQSPSRYA 201
+TG+++ L + V+ Y L ++A D++ Y
Sbjct: 325 NNETGDIITLAAGLDREKVQRYTLIIQATDMEGNPTYG 362
>sp|Q8N6Y1|PCD20_HUMAN Protocadherin-20 OS=Homo sapiens GN=PCDH20 PE=2 SV=1
Length = 924
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDV-KGINKAETHVTVDVLDENDNSPVFSQ 112
S +S +G+L V++ +DREE +Y + A D K ++ V + VLD+NDNSP F
Sbjct: 556 SLDSVTGILTVST-QLDREEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFIN 614
Query: 113 KVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDK---VAYKLAVPSNLVVIVPQT 169
K + F V + ++ + IG +S TDAD + VA + S++ VI T
Sbjct: 615 KDFSFFVPE----------NFPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFVI--DT 662
Query: 170 GELLLTGDPPSD---DVEYELTVEAHDLQSPS 198
G+ +L D Y L VEA D P+
Sbjct: 663 GKGMLRAKVSLDREQQSSYTLWVEAVDGGEPA 694
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGD 121
LL T+ +D E Y + + A + +G + + V +LD+NDN+P+F Q + + +
Sbjct: 461 LLETTKPMDYELQQFYEVAVVAWNSEGFHVKRV-IKVQLLDDNDNAPIFLQPLIELTIEE 519
Query: 122 LKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLA--VPSNLVVIVPQTGELLLTG 176
+S N+ ++ + ATDAD + +V+Y L PS + TG L ++
Sbjct: 520 -NNSPNAFLTK---------LYATDADSEERGQVSYFLGPDAPSYF-SLDSVTGILTVST 568
Query: 177 DPPSDDVE-YELTVEAHDLQSPSR 199
++ E Y TV A D P R
Sbjct: 569 QLDREEKEKYRYTVRAVDCGKPPR 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,551,163
Number of Sequences: 539616
Number of extensions: 5479045
Number of successful extensions: 12804
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 10863
Number of HSP's gapped (non-prelim): 1428
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)