RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2920
(325 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 104 bits (262), Expect = 4e-27
Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 33/178 (18%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ + ++ + FA+ E +GV+ +DRE +++++ + +D
Sbjct: 42 LVFGVSGEEASRFFAV------------EPDTGVV-WLRQPLDRETKSEFTVEFSVSD-- 86
Query: 88 GINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDA 147
V + V D NDN+P F + Y + N+ V + I V+ATD
Sbjct: 87 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRI-----PENTPVG-----TPIFIVNATDP 136
Query: 148 D-GD--KVAYKLAVPSNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQSPSR 199
D G V Y PS I G + + D Y+LTV A D
Sbjct: 137 DLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ--ELDYEVTQAYQLTVNATDQDKTRP 192
Score = 64.2 bits (157), Expect = 2e-12
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 103 ENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLA--VPS 160
+ + P F+ + + ++ + SS+ + A D D D + + ++ S
Sbjct: 1 QVNRLPFFTNHFFDTYL-----LISEDTP---VGSSVTQLLARDMDNDPLVFGVSGEEAS 52
Query: 161 NLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQSPS 198
+ P TG + L P D E+ + D Q
Sbjct: 53 RFFAVEPDTGVVWLRQ--PLDRETKSEFTVEFSVSDHQGVI 91
Score = 58.8 bits (143), Expect = 2e-10
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 19/82 (23%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
V YS + F + + ++D E Y L + ATD +
Sbjct: 144 VLYSFQPPSP---FFAIDSARGIVT------------VIQELDYEVTQAYQLTVNATD-Q 187
Query: 88 GIN---KAETHVTVDVLDENDN 106
++ + + D D
Sbjct: 188 DKTRPLSTLANLAIIITDMQDM 209
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 104 bits (261), Expect = 7e-27
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 42/209 (20%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E + + + S ++Y ++ F + + KSG
Sbjct: 13 EYTGPDPVL---VGRLHSDIDSGDGNIKYILSGEGAGTIFVI------------DDKSGN 57
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINK---AETHVTVDVLDENDNSPVFSQKVYRFI 118
+ T +DREE AQY+L+ A D + N+ + V V D NDN P F ++Y
Sbjct: 58 IHAT-KTLDREERAQYTLMAQAVD-RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHAN 115
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGD------KVAYKLAVPSNLVVIVPQTGEL 172
V SNV +S+ V+A+DAD K+ Y + + QTG +
Sbjct: 116 V-----PERSNV-----GTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGII 165
Query: 173 LLTGDPPSDDVE----YELTVEAHDLQSP 197
P+ D E Y + ++A D+
Sbjct: 166 RTAL--PNMDREAKEEYHVVIQAKDMGGH 192
Score = 66.5 bits (163), Expect = 3e-13
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 1 MENSKSGTGVKGLPILVA-----SSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNST 55
E S GT V I V + YSI +G F++
Sbjct: 117 PERSNVGTSV----IQVTASDADDPTYGNSAKLVYSILEGQP--YFSV------------ 158
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN---KAETHVTVDVLDENDNSP 108
E+++G++ ++DRE +Y +VI A D+ G T VT+ + D+ +
Sbjct: 159 EAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 31.9 bits (73), Expect = 0.17
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 136 FSSIGSVSATDAD-GD-KVAYKLAVPS--NLVVIVPQTGELLLTGDPPSD---DVEYELT 188
+ +D D GD + Y L+ + VI ++G + T D +Y L
Sbjct: 18 DPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATK--TLDREERAQYTLM 75
Query: 189 VEAHDLQSPS 198
+A D +
Sbjct: 76 AQAVDRDTNR 85
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 102 bits (257), Expect = 2e-26
Identities = 41/209 (19%), Positives = 73/209 (34%), Gaps = 40/209 (19%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E + S + S ++Y ++ F + +G
Sbjct: 12 EYTGSDYQY---VGKLHSDQDRGDGSLKYILSGDGAGDLFII------------NENTGD 56
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFIV 119
+ T +DREE Y L A + + E + + + D NDN P+F++ VY V
Sbjct: 57 IQAT-KRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 120 GDLKSSLNSNVSHWKKFSSIGSVSATDADGD------KVAYKLAVPSNLVVIVPQTGELL 173
++V + + V+ATDAD KV Y + + +TG +
Sbjct: 116 -----PEMADV-----GTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIK 165
Query: 174 LTGDPPSDDVE----YELTVEAHDLQSPS 198
D E Y++ ++A D+
Sbjct: 166 TALLNM--DRENREQYQVVIQAKDMGGQM 192
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 99.7 bits (249), Expect = 3e-25
Identities = 40/178 (22%), Positives = 64/178 (35%), Gaps = 38/178 (21%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
Y I + N F + + G + +DRE+ A+Y L D +
Sbjct: 33 AMYIIEGESANTIFKV------------QGYDGDIYAF-ERLDREKKAEYELTAHIIDRR 79
Query: 88 GINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
E + + V D NDN+P+F QK++ V S + +S+ V+A
Sbjct: 80 NNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV-----PEMSRLG-----TSVTKVTAE 129
Query: 146 DADGD------KVAYKLAVPSNLVVIVPQTGELLLTGDPPSDDVE----YELTVEAHD 193
DAD V Y++ + + D D E YE+ V+A D
Sbjct: 130 DADDPTVAGHATVTYQIIKGNEYFTVDDSGVIFTARADL---DRESQSAYEIIVKAKD 184
Score = 54.6 bits (132), Expect = 4e-09
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 26/109 (23%)
Query: 1 MENSKSGTGVKGLPILVA-----SSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNST 55
E S+ GT V V H V Y I +GN+ F + + +
Sbjct: 114 PEMSRLGTSV----TKVTAEDADDPTVAGHATVTYQIIKGNE--YFTV-DDSGVIFT--- 163
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN--KAETHVTVDVLD 102
D+DRE + Y +++ A D G+ + V + + D
Sbjct: 164 ---------ARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 100 bits (251), Expect = 2e-24
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 54/226 (23%)
Query: 1 MENSKSGTGVKGLPILVA-----SSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNST 55
E S GT V V + YSI +G F++
Sbjct: 116 PEMSILGTSV----TNVTATDADDPVYGNSAKLVYSILEGQP--YFSI------------ 157
Query: 56 ESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN---KAETHVTVDVLDENDNSPVFSQ 112
E ++ ++ ++DRE +Y +VI A D+ G + T +TV + D NDN P F+Q
Sbjct: 158 EPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQ 217
Query: 113 KVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSN-------L 162
+Y F V + + ++IG V A D D + +Y + + +
Sbjct: 218 SLYHFSV-----PEDVVLG-----TAIGRVKANDQDIGENAQSSYDI-IDGDGTALFEIT 266
Query: 163 VVIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSPSRYAREP 204
Q G + L D E Y L VEA ++ R++
Sbjct: 267 SDAQAQDGVIRLRK---PLDFETKKSYTLKVEAANIHIDPRFSSRG 309
Score = 95.4 bits (238), Expect = 1e-22
Identities = 69/341 (20%), Positives = 116/341 (34%), Gaps = 68/341 (19%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGV 61
E S + G + + + ++Y ++ F + N T +I
Sbjct: 12 EFSGPEPILVGR---LHTDLDPGSKKIKYILSGDGAGTIFQI-NDITGDIH--------- 58
Query: 62 LLVTSGDIDREEVAQYSLVITATDVKGINKAETH--VTVDVLDENDNSPVFSQKVYRFIV 119
+DREE A+Y+L A D + E + V D NDN+P F Y V
Sbjct: 59 ---AIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115
Query: 120 GDLKSSLNSNVSHWKKFSSIGSVSATDAD----GD--KVAYKLAVPSNLVVIVPQTGELL 173
S + +S+ +V+ATDAD G+ K+ Y + I P+T +
Sbjct: 116 -----PEMSILG-----TSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIK 165
Query: 174 LTGDPPSD---DVEYELTVEAHDL--QSPSRYAREPAQVWLQ---FNSPVLQDEQLLQMI 225
P D EY + ++A D+ S V L N P +
Sbjct: 166 TA-LPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSV 224
Query: 226 DRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIR-DENPW 284
E + A+ R+ ++ D + + + F+I D
Sbjct: 225 P---------EDVVLGTAI---GRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQA- 271
Query: 285 ITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQATNGGP 325
++G +R++K DFE K+ V +A N
Sbjct: 272 ----QDGVIRLRKPLDFETK---KSYTLKV----EAANIHI 301
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 97.5 bits (243), Expect = 3e-24
Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 43/217 (19%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
EN + ++ + + + + TF +G
Sbjct: 11 PENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTF------------RINENTG 58
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFI 118
+ VT +DRE +A Y L + TD E + V V+D+NDN P+F + Y
Sbjct: 59 SVSVT-RTLDRETIATYQLYVETTD-ASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGH 116
Query: 119 VGDLKSSLNSNVSHWKKFSSIGSVSATDADGD-----KVAYKL------AVPSNLVVIVP 167
V S +++ ++A DAD + Y + N+ I P
Sbjct: 117 V-----MEGSPT-----GTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDP 166
Query: 168 QTGELLLTGDPPSDDVE------YELTVEAHDLQSPS 198
+ G+++ P D E YEL +EA D+
Sbjct: 167 EKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLD 203
Score = 35.8 bits (83), Expect = 0.009
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 137 SSIGSVSATDADGD---KVAYKLA--VPSNLVVIVPQTGELLLTGDPPSDDVE----YEL 187
+G V +D ++ K P I TG + +T + D E Y+L
Sbjct: 20 RDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR---TLDRETIATYQL 76
Query: 188 TVEAHDLQSPSR 199
VE D +
Sbjct: 77 YVETTDASGKTL 88
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 99.4 bits (248), Expect = 3e-24
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 36/178 (20%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD-- 85
+ Y I + F + + + + T G + +Y L + A D
Sbjct: 141 IHYFIVRDRTGGRFEV-DERSGVV------------RTRGTDLFQLDMEYVLYVKAEDQN 187
Query: 86 ---VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSV 142
++ + ++ +P F Y + N KK S I S+
Sbjct: 188 GKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEI-----PENQ-----KKDSDIISI 236
Query: 143 SATDADGDKVAYKLAV---PSNLVVIVPQTGELLLTGD----PPSDDVEYELTVEAHD 193
A ++ Y L + I P +G + L + Y L V A +
Sbjct: 237 KAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 294
Score = 84.4 bits (209), Expect = 7e-19
Identities = 51/320 (15%), Positives = 99/320 (30%), Gaps = 66/320 (20%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ------YSLVI 81
+ + + D TF +++ +G + D EE+ + ++
Sbjct: 22 SVFQLEKETDKETFKIRDDNPWVT----VETNGAVR-VKKKWDYEELGPEKTIDFWVIIT 76
Query: 82 TATDVKGI-NKAETHVTVDVLDENDNSPVFSQKV--YRFIVGDLKSSLNSNVSHWKKFSS 138
GI V + V D ND P F + + +V LN+ + +
Sbjct: 77 NMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVV-----QLNAPPN-----TP 126
Query: 139 IGSVSATDAD-GDKVAYKLAVP--SNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAH 192
+ ++ A D D + Y + + ++G + G D+EY L V+A
Sbjct: 127 VFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRG--TDLFQLDMEYVLYVKAE 184
Query: 193 DLQSPSRYAREPAQVWLQF------NSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRP 246
D R + + +P I E +
Sbjct: 185 DQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEI---PEN-----------QKKD 230
Query: 247 TKRIDFSETDGEMEGRIVFALEKETEREK-FKIRDENPWITVDENGDVRVKKRWDFEELG 305
+ I + I + L+ + + F I P +G V++ K DFE+L
Sbjct: 231 SDIISIKAKSFA-DREIRYTLKAQGQGAGTFNI---GP-----TSGIVKLAKELDFEDL- 280
Query: 306 PEKTIDFWVTINNQATNGGP 325
+ + + + AT
Sbjct: 281 -RQPHVYSLIV--TATEDSG 297
Score = 62.4 bits (152), Expect = 3e-11
Identities = 55/83 (66%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 243 AVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFE 302
AVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NPW+TV+ NG VRVKK+WD+E
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 303 ELGPEKTIDFWVTINNQATNGGP 325
ELGPEKTIDFWV I +
Sbjct: 62 ELGPEKTIDFWV-IITNMGHNAG 83
Score = 57.8 bits (140), Expect = 1e-09
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 17/84 (20%)
Query: 28 VRYSITQ-GNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ---YSLVITA 83
+RY++ G TF + PT+ ++ + ++D E++ Q YSL++TA
Sbjct: 246 IRYTLKAQGQGAGTFNI-GPTSGIVK------------LAKELDFEDLRQPHVYSLIVTA 292
Query: 84 TDVKGINKAETHVTVDVLDENDNS 107
T+ G +T+ V D NDN+
Sbjct: 293 TEDSGGFSTSVDLTIRVTDVNDNA 316
Score = 33.9 bits (78), Expect = 0.064
Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 24/110 (21%)
Query: 139 IGSVSATDADGD---KVAYKLA----------VPSNLVVIVPQTGELLLTG-------DP 178
+ T+ADGD K ++L N V V G + + P
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 179 PSDDVEYELTVEAHDLQSPSRYAREPAQVWLQ---FNSPV-LQDEQLLQM 224
+ + + + ++ P + +Q
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQA 115
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 99.7 bits (249), Expect = 2e-23
Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 39/212 (18%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P Y I+ G+ F I S G++ ID E + L + A
Sbjct: 255 PAWNAAYRISGGDPTGRF--------AILTDPNSNDGLV-TVVKPIDFETNRMFVLTVAA 305
Query: 84 TD-------VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKF 136
+ ++ ++ V+V V+D N+N P F+ + +
Sbjct: 306 ENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEE-----GLHAG----- 354
Query: 137 SSIGSVSATDADGD---KVAYKLAV-PSNLVVIVPQTGELLLTG-----DPPSDDVEYEL 187
+ + +++A D D + Y P+N + I P G++ P + Y
Sbjct: 355 TMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNA 414
Query: 188 TVEAHDLQSPSRYAREPAQVWLQ---FNSPVL 216
T A D P Q++L N+P +
Sbjct: 415 TFLASDNGIPPMSGTGTLQIYLLDINDNAPQV 446
Score = 86.2 bits (214), Expect = 7e-19
Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 48/222 (21%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGN----DNHTFALKNPTTHEIRNSTE 56
ENS+ G ++ S + + +RYS+T F +
Sbjct: 10 PENSR---GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFII------------N 54
Query: 57 SKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVFSQKVY 115
SG L VT +DRE +A++ L A D+ G + ++V+D NDN P F +V+
Sbjct: 55 PISGQLSVTK-PLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW 113
Query: 116 RFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD-----KVAYKL------AVPSNLVV 164
V + S + + +V+A DAD + Y++ N+
Sbjct: 114 NGSVPE-----GSKPG-----TYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFT 163
Query: 165 IVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSPSRYAR 202
I +TG+++ D E Y L ++A D++ Y
Sbjct: 164 INNETGDIITVAAGL--DREKVQQYTLIIQATDMEGNPTYGL 203
Score = 80.8 bits (200), Expect = 4e-17
Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 49/229 (21%)
Query: 1 MENSKSGTGVKGLPILVAS---SHKHPHQLVRYSITQGNDN----HTFALKNPTTHEIRN 53
E SK GT V + A + ++RY I + + F +
Sbjct: 118 PEGSKPGTYVM---TVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTI---------- 164
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN----KAETHVTVDVLDENDNSPV 109
+++G ++ + +DRE+V QY+L+I ATD++G + V D NDN P
Sbjct: 165 --NNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPE 222
Query: 110 FSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAV-------PSNL 162
F+ + V + + ++ + +++ TD D A P+
Sbjct: 223 FTAMTFYGEVPE--NRVD---------VIVANLTVTDKDQPHTPAWNAAYRISGGDPTGR 271
Query: 163 VVIV--PQTGELLLTGDPPSD---DVEYELTVEAHDLQSPSRYAREPAQ 206
I+ P + + L+T P D + + LTV A + ++ + P Q
Sbjct: 272 FAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQ 320
Score = 61.6 bits (150), Expect = 8e-11
Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 45/194 (23%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEV----AQYSL 79
Q +RY+ N + +P +I T +DRE Y+
Sbjct: 369 MQQNIRYTKLSDPANW-LKI-DPVNGQIT------------TIAVLDRESPNVKNNIYNA 414
Query: 80 VITATDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
A+D GI T+ +LD NDN+P + +S+N
Sbjct: 415 TFLASD-NGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEPNSIN---------- 463
Query: 138 SIGSVSATDAD----GDKVAYKLAVPS----NLVVIVPQTGELLLTGDPPS--DDVEYEL 187
++A D D A+ L + I G+ + YE+
Sbjct: 464 ----ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEV 519
Query: 188 TVEAHDLQSPSRYA 201
+ D +P +
Sbjct: 520 PIIITDSGNPPKSN 533
Score = 56.6 bits (137), Expect = 4e-09
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 15/91 (16%)
Query: 29 RYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG 88
++ + + +G + I E Y + I TD G
Sbjct: 481 DLPLSPVTIKRNWTI------------NRLNGDFAQLNLKIKFLEAGIYEVPIIITD-SG 527
Query: 89 IN--KAETHVTVDVLDENDNSPVFSQKVYRF 117
+ + V V + N +
Sbjct: 528 NPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 98.6 bits (246), Expect = 5e-23
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 35/190 (18%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P Y++ D + +PTT++ G+L T+ +D E QY L +
Sbjct: 253 PAWKAVYTVVNDPDQQFVVVTDPTTND---------GIL-KTAKGLDFEAKQQYILHVRV 302
Query: 84 TD----VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSI 139
+ + + VTVDV+D N+ P+F R V + + V I
Sbjct: 303 ENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPE-----DFGVG-----QEI 351
Query: 140 GSVSATDADGD---KVAYKLAV-PSNLVVIVPQTGELLLTG------DPPSDDVEYELTV 189
S +A + D K+ Y++ +N + I P+TG + + Y +
Sbjct: 352 TSYTAREPDTFMDQKITYRIWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALI 411
Query: 190 EAHDLQSPSR 199
A D SP
Sbjct: 412 IATDDGSPIA 421
Score = 84.3 bits (209), Expect = 3e-18
Identities = 54/194 (27%), Positives = 76/194 (39%), Gaps = 38/194 (19%)
Query: 26 QLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
V YSIT A K P E ++G L VT +DRE +A+Y L A
Sbjct: 32 TKVFYSITGQG-----ADKPPVGV---FIIERETGWLKVTQ-PLDREAIAKYILYSHAVS 82
Query: 86 VKGINK-AETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSA 144
G + + V D+NDN P F+Q+V+ V + + +S+ VSA
Sbjct: 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE-----GAVPG-----TSVMKVSA 132
Query: 145 TDADGD------KVAYKL------AVPSNLVVIVPQTGELLLTGDPPSDDVE----YELT 188
TDAD D +AY + N+ + TG + + D E Y L
Sbjct: 133 TDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL--DRESYPTYTLV 190
Query: 189 VEAHDLQSPSRYAR 202
V+A DLQ
Sbjct: 191 VQAADLQGEGLSTT 204
Score = 81.2 bits (201), Expect = 3e-17
Identities = 71/364 (19%), Positives = 122/364 (33%), Gaps = 101/364 (27%)
Query: 1 MENSKSGTGVKGLPILVAS----SHKHPHQLVRYSITQGNDNHT----FALKNPTTHEIR 52
E + GT V + A+ + + Y+I + F + N T I
Sbjct: 118 AEGAVPGTSVM---KVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV-NRDTGVIS 173
Query: 53 NSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG-INKAETHVTVDVLDENDNSPVFS 111
V + +DRE Y+LV+ A D++G + V D NDN+PVF+
Sbjct: 174 -----------VLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFN 222
Query: 112 QKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAV------PSNLVVI 165
Y+ V ++ +N + I ++ TD D AV P V+
Sbjct: 223 PSTYQGQV--PENEVN---------ARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVV 271
Query: 166 V--PQTGELLLTGDPPSD---DVEYELTVEAHDLQSPSRYAREPAQVWLQFNSPVLQDEQ 220
V P T + +L D +Y L V + + F ++
Sbjct: 272 VTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEE--------------PFEGSLVPSTA 317
Query: 221 --LLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSE---------------TDGEMEGRI 263
+ ++D EAP + +R++ E D M+ +I
Sbjct: 318 TVTVDVVDVN-EAP---------IFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKI 367
Query: 264 VFALEKETEREKFKIRDENPWITVD-ENGDVRVKKRWDFEELGPEKTIDFWVTINNQAT- 321
+ + RD W+ ++ E G + + D E+ K + I AT
Sbjct: 368 TYRI----------WRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALI--IATD 415
Query: 322 NGGP 325
+G P
Sbjct: 416 DGSP 419
Score = 65.8 bits (161), Expect = 4e-12
Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEV-----AQYS 78
Q + Y I + N + NP T I T ++DRE+ + Y
Sbjct: 363 MDQKITYRIWRDTANW-LEI-NPETGAIF------------TRAEMDREDAEHVKNSTYV 408
Query: 79 LVITATDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKF 136
+I ATD G A T+ +LD NDN+P+ + +F + H
Sbjct: 409 ALIIATD-DGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQF-------CQRNPQPH---- 456
Query: 137 SSIGSVSATDAD----GDKVAYKL---AVPSNLVVIVPQTGELLLTGDPPSDDV-EYELT 188
++ D D +L A + + E L+ ++ EY++
Sbjct: 457 ----IITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIH 512
Query: 189 VEAHDLQSPSRYA 201
++ D Q+ +
Sbjct: 513 LKLADNQNKDQVT 525
Score = 53.9 bits (130), Expect = 3e-08
Identities = 11/91 (12%), Positives = 20/91 (21%), Gaps = 13/91 (14%)
Query: 26 QLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
+T G + N E E+ +Y + + D
Sbjct: 470 SPFTAELTHGASVNWTIEYNDAAQESL------------ILQPRKDLEIGEYKIHLKLAD 517
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQKVYR 116
T + V V D + +
Sbjct: 518 -NQNKDQVTTLDVHVCDCEGTVNNCMKAHHH 547
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 92.8 bits (231), Expect = 1e-22
Identities = 54/191 (28%), Positives = 77/191 (40%), Gaps = 42/191 (21%)
Query: 28 VRYSIT-QGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDV 86
V YSIT QG D + E ++G L VT +DRE +A+Y L A
Sbjct: 34 VFYSITGQGADKPPVGVF---------IIERETGWLKVT-QPLDREAIAKYILYSHAVS- 82
Query: 87 KGINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSA 144
E + + V D+NDN P F+Q+V+ V + + +S+ VSA
Sbjct: 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAE-----GAVPG-----TSVMKVSA 132
Query: 145 TDADGD------KVAYKL------AVPSNLVVIVPQTGELLLTGDPPSDDVE----YELT 188
TDAD D +AY + N+ + TG + + D E Y L
Sbjct: 133 TDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL--DRESYPTYTLV 190
Query: 189 VEAHDLQSPSR 199
V+A DLQ
Sbjct: 191 VQAADLQGEGL 201
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 95.5 bits (238), Expect = 5e-22
Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 33/183 (18%)
Query: 30 YSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD---- 85
+ N+ F I ES G+L T+ +D E QY L IT +
Sbjct: 264 VYKIRVNEGGFF--------NITTDPESNQGIL-TTAKGLDFELRKQYVLQITVENAEPF 314
Query: 86 VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSAT 145
+ + VTV V D N+ P F V R V + + + I S+ A
Sbjct: 315 SVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSE-----DLSRG-----EKIISLVAQ 363
Query: 146 DADGD---KVAYKLAV-PSNLVVIVPQTGELLLTG-----DPPSDDVEYELTVEAHDLQS 196
D D K++Y + P+ + + G + G + Y + + D
Sbjct: 364 DPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV 423
Query: 197 PSR 199
Sbjct: 424 SVG 426
Score = 87.8 bits (218), Expect = 2e-19
Identities = 59/223 (26%), Positives = 86/223 (38%), Gaps = 49/223 (21%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGN----DNHTFALKNPTTHEIRNSTE 56
EN G ++ S+K V YSIT F + E
Sbjct: 16 SENE---RGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRI------------E 60
Query: 57 SKSGVLLVTSGDIDREEVAQYSLVITATDVKGINK-AETHVTVDVLDENDNSPVFSQKVY 115
++G +LVT +DREE +Y L A G +T++V+D+NDN P F+Q V+
Sbjct: 61 WETGWMLVTRP-LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVF 119
Query: 116 RFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD----GD--KVAYKL------AVPSNLV 163
R V + + + +VSATD D ++Y + NL
Sbjct: 120 RGSVRE-----GVQPG-----TQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLF 169
Query: 164 VIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSPSRYAR 202
I +TG + L G D E Y LTV+A DL+
Sbjct: 170 TINRETGVISLIGTGL--DREKFPEYTLTVQATDLEGAGLSVE 210
Score = 78.1 bits (193), Expect = 4e-16
Identities = 44/213 (20%), Positives = 83/213 (38%), Gaps = 46/213 (21%)
Query: 1 MENSKSGTGVKGLPILVAS----SHKHPHQLVRYSITQGN----DNHTFALKNPTTHEIR 52
E + GT V + A+ + + ++ YSI + + + F + N T I
Sbjct: 124 REGVQPGTQVM---AVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI-NRETGVIS 179
Query: 53 NSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG-INKAETHVTVDVLDENDNSPVFS 111
+ +DRE+ +Y+L + ATD++G E + + D NDN+P+F
Sbjct: 180 -----------LIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFD 228
Query: 112 QKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-----GDKVAYKLAVPSNL---V 163
K Y +V ++ + + +S TD D + YK+ V +
Sbjct: 229 PKTYTALV--PENEIG---------FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 277
Query: 164 VIVPQTGELLLTGDPPSD---DVEYELTVEAHD 193
P++ + +LT D +Y L + +
Sbjct: 278 TTDPESNQGILTTAKGLDFELRKQYVLQITVEN 310
Score = 69.6 bits (171), Expect = 2e-13
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 43/191 (22%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDRE----EVAQYSL 79
Q + Y I + N + +G++DRE + Y++
Sbjct: 369 QIQKLSYFIGNDPARW-LTV-NKDNGIVT------------GNGNLDRESEYVKNNTYTV 414
Query: 80 VITATDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
++ TD G++ T+ VLD NDN PV S +V+ + + +
Sbjct: 415 IMLVTD-DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV----------- 462
Query: 138 SIGSVSATDADGDKVAYKL------AVPSNLVVIVPQTGEL-LLTGDPPSDDVEYELTVE 190
++ +DAD Y + G LL+ +Y + V
Sbjct: 463 ----LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVL 518
Query: 191 AHDLQSPSRYA 201
D Q+ +
Sbjct: 519 LSDAQNNPQLT 529
Score = 40.4 bits (95), Expect = 5e-04
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 14/82 (17%)
Query: 29 RYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG 88
+ S++ G+D A + + + + YS+ + +D
Sbjct: 478 KVSLSHGSDLTWKAELDSKGT-------------SMLLSPTQQLKKGDYSIYVLLSD-AQ 523
Query: 89 INKAETHVTVDVLDENDNSPVF 110
N T V V +
Sbjct: 524 NNPQLTVVNATVCSCEGKAIKC 545
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 94.6 bits (235), Expect = 1e-21
Identities = 41/189 (21%), Positives = 64/189 (33%), Gaps = 34/189 (17%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
P Y I + N+ F I ES G+L T+ +D E QY L IT
Sbjct: 408 PAWQAVYKI-RVNEGGFF--------NITTDPESNQGIL-TTAKGLDFELRKQYVLQITV 457
Query: 84 TD----VKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSI 139
+ + + VTV V D N+ P F V R V + + + I
Sbjct: 458 ENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSE-----DLSRG-----EKI 506
Query: 140 GSVSATDADGD---KVAYKLAV-PSNLVVIVPQTGELLLTG-----DPPSDDVEYELTVE 190
S+ A D D K++Y + P+ + + G + G + Y + +
Sbjct: 507 ISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566
Query: 191 AHDLQSPSR 199
D
Sbjct: 567 VTDDGVSVG 575
Score = 90.3 bits (224), Expect = 4e-20
Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 49/223 (21%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGN----DNHTFALKNPTTHEIRNSTE 56
EN G ++ S+K V YSIT F + E
Sbjct: 165 SENE---RGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRI------------E 209
Query: 57 SKSGVLLVTSGDIDREEVAQYSLVITATDVKGINK-AETHVTVDVLDENDNSPVFSQKVY 115
++G +LVT +DREE +Y L A G +T++V+D+NDN P F+Q V+
Sbjct: 210 WETGWMLVTR-PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVF 268
Query: 116 RFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD------KVAYKL------AVPSNLV 163
R V + + + +VSATD D + ++Y + NL
Sbjct: 269 RGSVRE-----GVQPG-----TQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLF 318
Query: 164 VIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSPSRYAR 202
I +TG + L G D E Y LTV+A DL+
Sbjct: 319 TINRETGVISLIGTGL--DREKFPEYTLTVQATDLEGAGLSVE 359
Score = 78.0 bits (192), Expect = 4e-16
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 46/213 (21%)
Query: 1 MENSKSGTGVKGLPILVAS----SHKHPHQLVRYSITQGNDNH----TFALKNPTTHEIR 52
E + GT V + A+ + + ++ YSI + + F +
Sbjct: 273 REGVQPGTQV---MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI--------- 320
Query: 53 NSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKG-INKAETHVTVDVLDENDNSPVFS 111
++GV+ + +DRE+ +Y+L + ATD++G E + + D NDN+P+F
Sbjct: 321 ---NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFD 377
Query: 112 QKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-----GDKVAYKLAVPSNL---V 163
K Y +V + + + + +S TD D + YK+ V +
Sbjct: 378 PKTYTALVPE--NEIG---------FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 426
Query: 164 VIVPQTGELLLTGDPPSD---DVEYELTVEAHD 193
P++ + +LT D +Y L + +
Sbjct: 427 TTDPESNQGILTTAKGLDFELRKQYVLQITVEN 459
Score = 69.5 bits (170), Expect = 3e-13
Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 43/189 (22%)
Query: 24 PHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVA----QYSL 79
Q + Y I + N + +G++DRE Y++
Sbjct: 518 QIQKLSYFIGNDPARW-LTV-NKDNGIVT------------GNGNLDRESEYVKNNTYTV 563
Query: 80 VITATDVKGINKAETHVTV--DVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFS 137
++ TD G++ T+ VLD NDN PV S +V+ + + +
Sbjct: 564 IMLVTD-DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV----------- 611
Query: 138 SIGSVSATDAD----GDKVAYKL--AVPSNLVVIVPQTGEL-LLTGDPPSDDVEYELTVE 190
++ +DAD L + G LL+ +Y + V
Sbjct: 612 ----LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVL 667
Query: 191 AHDLQSPSR 199
D Q+ +
Sbjct: 668 LSDAQNNPQ 676
Score = 58.7 bits (142), Expect = 9e-10
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 21/183 (11%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
Y + F + T ++ + S R ++ + + +
Sbjct: 71 GLYDVGDSR----FRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHR 126
Query: 88 GINKAETH-VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATD 146
+A + + VL + +K +++ +K S N + + +
Sbjct: 127 SGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGP---FPKRLVQIKSNK 183
Query: 147 ADGDKVAYKL------AVPSNLVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQS 196
+KV Y + P + I +TG +L+T D E Y L+ A
Sbjct: 184 DRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTR---PLDREEYDKYVLSSHAVSENG 240
Query: 197 PSR 199
Sbjct: 241 SPV 243
Score = 54.1 bits (130), Expect = 3e-08
Identities = 29/243 (11%), Positives = 71/243 (29%), Gaps = 40/243 (16%)
Query: 96 VTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-GDKVAY 154
V D + P FS Y F V + +G V+ +D Y
Sbjct: 23 VPSINADVSGCKPGFSSAEYIFSV----NRRELERG-----RKLGKVNFSDCTTRKHGLY 73
Query: 155 KLAVPSNLVVIVPQTGELLLTGDPPSDDVEYELTVEAHD-LQSPSRYAREPAQVWLQFNS 213
+ + ++P L+ D ++ ++ ++ + A + +
Sbjct: 74 DVG--DSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEA 131
Query: 214 PVLQDEQLLQMIDRKSEAPHRIEKRRVTRAV------RPTKRIDFSET--DGEMEGRIVF 265
+ + R ++ V + R + + + ++ +
Sbjct: 132 HSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYY 191
Query: 266 AL----EKETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINNQAT 321
++ + F+I + E G + V + D EE D + +++ A
Sbjct: 192 SITGQGADNPPQGVFRI-EW-------ETGWMLVTRPLDREE------YDKY-VLSSHAV 236
Query: 322 NGG 324
+
Sbjct: 237 SEN 239
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 89.7 bits (223), Expect = 2e-21
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 47/196 (23%)
Query: 28 VRYSITQGN----DNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
+RYS+T F + SG L VT +DRE +A++ L A
Sbjct: 34 LRYSVTGPGADQPPTGIFII------------NPISGQLSVT-KPLDRELIARFHLRAHA 80
Query: 84 TDVKGINKAE--THVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGS 141
D N+ E + ++V+D NDN P F +V+ V S + + +
Sbjct: 81 VD-INGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSV-----PEGSKPG-----TYVMT 129
Query: 142 VSATDADGD-----KVAYKL------AVPSNLVVIVPQTGELLLTGDPPSDDVE----YE 186
V+A DAD + Y++ N+ I +TG+++ D E Y
Sbjct: 130 VTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGL--DREKVQQYT 187
Query: 187 LTVEAHDLQSPSRYAR 202
L ++A D++ Y
Sbjct: 188 LIIQATDMEGNPTYGL 203
Score = 53.5 bits (129), Expect = 1e-08
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 1 MENSKSGTGVKGLPILVAS---SHKHPHQLVRYSITQGNDN----HTFALKNPTTHEIRN 53
E SK GT V + A + ++RY I + + F +
Sbjct: 118 PEGSKPGTYVM---TVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTI---------- 164
Query: 54 STESKSGVLLVTSGDIDREEVAQYSLVITATDVKGINK----AETHVTVDVLD 102
+++G ++ + +DRE+V QY+L+I ATD++G + V D
Sbjct: 165 --NNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 91.2 bits (227), Expect = 8e-21
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 39/208 (18%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSIT-QGNDNHTFALKNPTTHEIRNSTESKS 59
EN K + I+ + + +RY++ QG TF + S
Sbjct: 229 PENQKKDS-----DIISIKAKSFADREIRYTLKAQGQGAGTFNIG------------PTS 271
Query: 60 GVLLVTSGDIDREEVAQ---YSLVITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYR 116
G++ + ++D E++ Q YSL++TAT+ G +T+ V D NDN+P F Y+
Sbjct: 272 GIV-KLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQ 330
Query: 117 FIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLAVPSNLVVIVPQTGELL 173
+++ ++ +SI V A D+D ++ Y ++ + + G ++
Sbjct: 331 AH------NVDEDIP---LGTSILRVKAMDSDSGSNAEIEYLVS--DDHFAV-DSNGIIV 378
Query: 174 LTG--DPPSDDVEYELTVEAHDLQSPSR 199
D +++ YE V A D P +
Sbjct: 379 NNKQLDADNNNAYYEFIVTAKDKGEPPK 406
Score = 88.5 bits (220), Expect = 7e-20
Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 35/183 (19%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD-- 85
+ Y I + F + + + +R T G + +Y L + A D
Sbjct: 146 IHYFIVRDRTGGRFEV-DERSGVVR------------TRGTDLFQLDMEYVLYVKAEDQN 192
Query: 86 -VKGINKAETHVTVDV-LDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVS 143
+ ++ + + +P F Y + N S I S+
Sbjct: 193 GKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEI-----PENQKK-----DSDIISIK 242
Query: 144 ATDADGDKVAYKLAVPSNLVV---IVPQTGELLLTGD----PPSDDVEYELTVEAHDLQS 196
A ++ Y L I P +G + L + Y L V A + S
Sbjct: 243 AKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-DS 301
Query: 197 PSR 199
Sbjct: 302 GGF 304
Score = 88.1 bits (219), Expect = 9e-20
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 30/195 (15%)
Query: 27 LVRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQ------YSLV 80
+ + + D TF +++ T +G + D EE+ + ++
Sbjct: 26 KSVFQLEKETDKETFKIRDDN----PWVTVETNGAV-RVKKKWDYEELGPEKTIDFWVII 80
Query: 81 ITATDVKGINK-AETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSI 139
GI V + V D ND P F + ++ + N + +
Sbjct: 81 TNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPM-----QAVVQLNAPPN---TPV 132
Query: 140 GSVSATDAD-GDKVAYKLAV--PSNLVVIVPQTGELLLTGDPPSDDVE----YELTVEAH 192
++ A D D + Y + + ++G + G +D + Y L V+A
Sbjct: 133 FTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRG---TDLFQLDMEYVLYVKAE 189
Query: 193 DLQSPSRYAREPAQV 207
D R +
Sbjct: 190 DQNGKVDDRRFQSTP 204
Score = 55.4 bits (134), Expect = 7e-09
Identities = 63/88 (71%), Positives = 74/88 (84%)
Query: 238 RRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKK 297
RRVTRAVRPTKRI+F+E DG+ EG+ VF LEKET++E FKIRD+NPW+TV+ NG VRVKK
Sbjct: 2 RRVTRAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKK 61
Query: 298 RWDFEELGPEKTIDFWVTINNQATNGGP 325
+WD+EELGPEKTIDFWV I N N G
Sbjct: 62 KWDYEELGPEKTIDFWVIITNMGHNAGI 89
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 71.9 bits (176), Expect = 8e-15
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
EN GT L+ P V Y + +G F P + E+
Sbjct: 149 RENRPPGTFH--QFRLLPVQFLCPQISVAYRLLEGEGLP-FRS-APDSLEVS-------- 196
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINK--AETHVTVDVLDENDNSPVFS 111
T +DRE+ +Y LV T G + V V DE+D++P F
Sbjct: 197 ----TRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 61.5 bits (149), Expect = 3e-11
Identities = 30/223 (13%), Positives = 55/223 (24%), Gaps = 50/223 (22%)
Query: 2 ENSKSGTGVKGLPILVASSHKHPHQLVRYSI-----TQGNDNHTFALKNPTTHEIRNSTE 56
+ +GT + + L + + P + + T+ ++N+ + T +
Sbjct: 14 VDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRI-QEDTGLLY---- 68
Query: 57 SKSGVLLVTSGDIDREEVAQYS--------LVITATDV-------KGINKAETHVTVDVL 101
+D + S L + +G + V
Sbjct: 69 --------LQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFS 120
Query: 102 DENDNSPVFSQKVYR---FIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYK 155
N + P S R F + N + VAY+
Sbjct: 121 FFNTSFPACSSLKPRELCFPETRPSFRIRENRP---PGTFHQFRLLPVQFLCPQISVAYR 177
Query: 156 LAVPSNLV-VIVPQTGELLLTGDPPSDDVE----YELTVEAHD 193
L L P + E+ D E YEL
Sbjct: 178 LLEGEGLPFRSAPDSLEVSTRWAL---DREQREKYELVAVCTV 217
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 62.7 bits (153), Expect = 2e-12
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 28 VRYSIT-QGNDNH---TFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
+ Y T +G F +G L VT +DREE + L A
Sbjct: 46 ITYKYTGKGITEPPFGIFVF------------NKDTGELNVT-SILDREETPFFLLTGYA 92
Query: 84 TDVKGINKAETH--VTVDVLDENDNSPVFSQ 112
D N E + + VLD NDN PVF+Q
Sbjct: 93 LD-ARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 26.5 bits (59), Expect = 6.1
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 138 SIGSVSATDADGD--KVAYKL------AVPSNLVVIVPQTGELLLTGDPPSDDVE----Y 185
I + + A+ K+ YK P + V TGEL +T D E +
Sbjct: 30 PIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTS---ILDREETPFF 86
Query: 186 ELTVEAHDLQSPSR 199
LT A D + +
Sbjct: 87 LLTGYALDARGNNV 100
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 61.1 bits (149), Expect = 4e-12
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 28 VRYSITQGNDNH----TFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITA 83
+RYS+T + F + SG L VT +DRE +A++ L A
Sbjct: 36 LRYSVTGPGADQPPTGIFII------------NPISGQLSVT-KPLDRELIARFHLRAHA 82
Query: 84 TDVKGINKAETH--VTVDVLDENDNSPVF 110
D N+ E + ++V+D NDN P F
Sbjct: 83 VD-INGNQVENPIDIVINVIDMNDNRPEF 110
Score = 31.5 bits (72), Expect = 0.092
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 137 SSIGSVSATDADGD---KVAYKLA------VPSNLVVIVPQTGELLLTGDPPSD---DVE 184
+ + D + Y + P+ + +I P +G+L +T P D
Sbjct: 18 PFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK--PLDRELIAR 75
Query: 185 YELTVEAHDLQSPSR 199
+ L A D+
Sbjct: 76 FHLRAHAVDINGNQV 90
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 59.8 bits (146), Expect = 2e-11
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 28 VRYSITQGNDN--HTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATD 85
+ Y ++ L + T+ + IDREEV Q + A D
Sbjct: 49 IEYVFGAATESVRRLLRL-DETSGWLS------------VLHRIDREEVNQLRFTVMARD 95
Query: 86 VKGINKAETH--VTVDVLDENDNSP 108
+G V +++ DENDN P
Sbjct: 96 -RGQPPKTDKATVVLNIKDENDNVP 119
Score = 55.6 bits (135), Expect = 5e-10
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 24/116 (20%)
Query: 98 VDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD-GD--KVAY 154
NDNSP F + VY L N + + I + A D D G ++ Y
Sbjct: 2 SSGSSGNDNSPRFEKSVYEA-------DLAENSAPG---TPILQLRAADLDVGVNGQIEY 51
Query: 155 KLAVPS----NLVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSPSRYAR 202
+ L+ + +G L + D E TV A D P + +
Sbjct: 52 VFGAATESVRRLLRLDETSGWLSVLH---RIDREEVNQLRFTVMARDRGQPPKTDK 104
Score = 29.4 bits (67), Expect = 0.64
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 17/67 (25%)
Query: 261 GRIVFALEKETE--REKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTINN 318
G+I + TE R ++ + +G + V R D EE + F V
Sbjct: 47 GQIEYVFGAATESVRRLLRL---DE-----TSGWLSVLHRIDREE---VNQLRFTV---- 91
Query: 319 QATNGGP 325
A + G
Sbjct: 92 MARDRGQ 98
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 55.2 bits (134), Expect = 5e-10
Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 27/118 (22%)
Query: 98 VDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD----GDKVA 153
NDN PVF + + + N +S+ + ATDAD + +
Sbjct: 2 SSGSSGNDNRPVFKEGQV-------EVHIPENAPVG---TSVIQLHATDADIGSNAE-IR 50
Query: 154 YKLAVP-----SNLVVIVPQTGELLLTGDPPSDDVE----YELTVEAHDLQSPSRYAR 202
Y L + TG + + S D E +++TV A D S A
Sbjct: 51 YIFGAQVAPATKRLFALNNTTGLITVQR---SLDREETAIHKVTVLASDGSSTPARAT 105
Score = 47.5 bits (114), Expect = 3e-07
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 28 VRYSI---TQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITAT 84
+RY FAL N TT I +DREE A + + + A+
Sbjct: 49 IRYIFGAQVAPATKRLFAL-NNTTGLIT------------VQRSLDREETAIHKVTVLAS 95
Query: 85 DVKGINKAETHVTVDVLDEN 104
D A VT++V D N
Sbjct: 96 D-GSSTPARATVTINVTDVN 114
Score = 27.0 bits (61), Expect = 3.9
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 18/68 (26%)
Query: 261 GRIVFALEK---ETEREKFKIRDENPWITVDENGDVRVKKRWDFEELGPEKTIDFWVTIN 317
I + + F + N G + V++ D EE +
Sbjct: 47 AEIRYIFGAQVAPATKRLFAL---NN-----TTGLITVQRSLDREE------TAIH-KVT 91
Query: 318 NQATNGGP 325
A++G
Sbjct: 92 VLASDGSS 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 17/104 (16%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
+E +GT + + S ++Y ++ F + + TT +I
Sbjct: 11 LEEY-TGTDPLYV-GKLHSDMDRGDGSIKYILSGEGAGIVFTI-DDTTGDIH-------- 59
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAETH--VTVDVLD 102
+DREE +QY+L A D + E + + D
Sbjct: 60 ----AIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 27.7 bits (62), Expect = 1.7
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 136 FSSIGSVSATDADGD--KVAYKLAVPS--NLVVIVPQTGELLLTGDPPSD---DVEYELT 188
+D D + Y L+ + I TG++ D +Y L
Sbjct: 18 DPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQ--RLDREERSQYTLR 75
Query: 189 VEAHDLQSP 197
+A D ++
Sbjct: 76 AQALDRRTG 84
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 47.0 bits (112), Expect = 3e-07
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
++Y ++ F + N T +I +DREE A+Y+L A D +
Sbjct: 35 IKYILSGDGAGTIFQI-NDITGDIH------------AIKRLDREEKAEYTLTAQAVDFE 81
Query: 88 GINKAE--THVTVDVLD 102
E + + V D
Sbjct: 82 TNKPLEPPSEFIIKVQD 98
Score = 25.8 bits (57), Expect = 7.6
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 136 FSSIGSVSATDADGD--KVAYKLAVPS--NLVVIVPQTGELLLTGDPPSD---DVEYELT 188
+ TD D K+ Y L+ + I TG++ D EY LT
Sbjct: 17 EPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIK--RLDREEKAEYTLT 74
Query: 189 VEAHDLQSP 197
+A D ++
Sbjct: 75 AQAVDFETN 83
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 45.8 bits (109), Expect = 1e-06
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 23/109 (21%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDN----HTFALKNPTTHEIRNSTE 56
EN K G ++ S+K V YSIT + F + T ++
Sbjct: 14 PENEK---GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFII-ERETGWLK---- 65
Query: 57 SKSGVLLVTSGDIDREEVAQYSLVITATDVKGINKAETH--VTVDVLDE 103
+ +DRE +A Y+L A N E + + V D+
Sbjct: 66 --------VTEPLDRERIATYTLFSHAVS-SNGNAVEDPMEILITVTDQ 105
Score = 30.8 bits (70), Expect = 0.14
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 25/104 (24%)
Query: 108 PVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD---KVAYKLA------V 158
P+ S + N ++ ++ D KV Y +
Sbjct: 2 PLGSWVIPPISC-----PENEKGPF------PKNLVQIKSNKDKEGKVFYSITGQGADTP 50
Query: 159 PSNLVVIVPQTGELLLTGDPPSD---DVEYELTVEAHDLQSPSR 199
P + +I +TG L +T P D Y L A +
Sbjct: 51 PVGVFIIERETGWLKVTE--PLDRERIATYTLFSHAVSSNGNAV 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 65/396 (16%), Positives = 121/396 (30%), Gaps = 128/396 (32%)
Query: 20 SHKHPHQLVR---------YSI--TQGNDNHTFALKNPTTHEIRN--ST-ESKSGVLLVT 65
K L R +I QGN + F E+R+ T G L+
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-------ELRDLYQTYHVLVGDLIKF 190
Query: 66 SGDIDREEVAQ-------YSLVITATDVKG-INKAETHVTVDVLDENDNSPV-------- 109
S + E + ++ + ++ + D L + P+
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGL---NILEWLENPSNTPDKDYLL---SIPISCPLIGVI 244
Query: 110 -FSQ-----KVYRFIVGDLKSSLNSNVSH---------------WKKFSS---------- 138
+ K+ F G+L+S L H W+ F
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 139 -IGSVSATDADGDKVAY-KLAVPSNLVVIVPQTGE------LLLTGDPPSDDVEYELTVE 190
IG AY ++P +++ + E L ++ + V+ V
Sbjct: 305 FIGVRC-------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQ--DYVN 354
Query: 191 AHDLQSPSRYAREPAQVWLQFNSP---VL----QDEQLLQMIDRKSEAPHRIEKRRVT-- 241
+ P A + ++ L N V+ Q L + RK++AP +++ R+
Sbjct: 355 KTNSHLP---AGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 242 -RAVRPTKRIDF--------SETDGEMEGRIVFALEKETEREKFKIRDENPWITV-D-EN 290
R ++ + R F S + + K+ + ++ I V D +
Sbjct: 411 ERKLKFSNR--FLPVASPFHSHL---LVP-ASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 291 G-DVRVKKRWDFEELGP---EKTIDFW-VTINNQAT 321
G D+RV E + + W T +AT
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVK-WETTTQFKAT 499
Score = 34.6 bits (79), Expect = 0.044
Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 63/179 (35%)
Query: 130 VSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLVV-----------IVPQTGELLLTGDP 178
+SH GS+ L VP+ I+P+ E D
Sbjct: 11 LSH-------GSLEHV----------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 179 PSDDVEYELTVE-----AHDLQSPSRYAREP--AQVWLQFNSPVLQDE-------QLLQM 224
P+ EL + + ++ + +F + L+ +LLQ
Sbjct: 54 PTTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 225 IDRKSEAPHRIEK-----RRVTRAVRPTKRIDFSETDGEMEGRIVFALEKETEREKFKI 278
D + K R + + RP + S AL + ++
Sbjct: 112 NDTTLVKTKELIKNYITARIMAK--RPFDKKSNS------------ALFRAVGEGNAQL 156
Score = 30.4 bits (68), Expect = 1.1
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 57/142 (40%)
Query: 193 DLQSPSRYAREPAQVWLQFNSPVLQDEQLLQMIDRKSEAPHRIEKR--RVTRAVR--PT- 247
DL S+ A++ VW + D H + + V P
Sbjct: 1634 DLYKTSKAAQD---VW---------NR-----ADN-----HFKDTYGFSILDIVINNPVN 1671
Query: 248 KRIDFSETDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEEL--- 304
I F G +G+ +IR+ + + D ++K F+E+
Sbjct: 1672 LTIHF----GGEKGK--------------RIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 305 -------GPEKTIDFWVTINNQ 319
+ + T Q
Sbjct: 1714 STSYTFRSEKGLLSA--TQFTQ 1733
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 44.7 bits (106), Expect = 2e-06
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 28 VRYSITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVK 87
+ + TF + +G + VT +DRE +A Y L + TD
Sbjct: 38 LTGKGVDQDPKGTFRI------------NENTGSVSVT-RTLDRETIATYQLYVETTDAS 84
Query: 88 GINKAET-HVTVDVLD 102
G + V V+D
Sbjct: 85 GKTLEGPVPLEVIVID 100
Score = 32.7 bits (75), Expect = 0.034
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 137 SSIGSVSATDADGD---KVAYKLA--VPSNLVVIVPQTGELLLTGDPPSD---DVEYELT 188
+G V +D ++ K P I TG + +T D Y+L
Sbjct: 20 RDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR--TLDRETIATYQLY 77
Query: 189 VEAHDLQSPSR 199
VE D +
Sbjct: 78 VETTDASGKTL 88
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 43.5 bits (103), Expect = 6e-06
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
EN + ++V+ + F + SG
Sbjct: 10 PENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKI------------NENSG 57
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAETH--VTVDVLD 102
+ VT +DRE + Y L + TD + E + + V+D
Sbjct: 58 EVSVT-KALDREAIPSYQLQVETTD-ENGKTIEGPVDLEILVID 99
Score = 31.6 bits (72), Expect = 0.093
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 137 SSIGSVSATDADGD---KVAYKLA--VPSNLVVIVPQTGELLLTGDPPSD---DVEYELT 188
+G V +D K+ K P + I +GE+ +T D Y+L
Sbjct: 19 KIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTK--ALDREAIPSYQLQ 76
Query: 189 VEAHDLQSPSR 199
VE D +
Sbjct: 77 VETTDENGKTI 87
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 42.0 bits (99), Expect = 2e-05
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 14/103 (13%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
EN + ++ + + + + F + N + ++
Sbjct: 10 PENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRI-NEISGDVS-------- 60
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINKAET-HVTVDVLD 102
+ +DRE +A Y L + TD+ G + + V+D
Sbjct: 61 ----VTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 31.6 bits (72), Expect = 0.088
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 138 SIGSVSATDADGD---KVAYKLA--VPSNLVVIVPQTGELLLTGDPPSDDVE----YELT 188
S+G V ++ +++ K P + I +G++ +T D E YEL
Sbjct: 20 SVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR---PLDREAIANYELE 76
Query: 189 VEAHDLQSPSR 199
VE DL
Sbjct: 77 VEVTDLSGKII 87
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 39.9 bits (94), Expect = 2e-04
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 56 ESKSGVLLVTSGDIDREEV----AQYSLVITATDVKGINKAET-HVTVDVLDENDNSPVF 110
E KSG LL+ +DREE+ L V + + + + D ND++P F
Sbjct: 60 EQKSGNLLL-KEKLDREELCGSTNPCILHF---QVLLKSPVQFIQGEIQLQDVNDHAPEF 115
Query: 111 SQK 113
+
Sbjct: 116 MED 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 41/293 (13%), Positives = 82/293 (27%), Gaps = 67/293 (22%)
Query: 36 NDNHTFALKN----PTTHEIRNS-TESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN 90
NDN FA N ++R + E + ++ G V G
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG------------------VLGSG 162
Query: 91 KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGD 150
K T V +DV K++ + + S K I + +D
Sbjct: 163 K--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 151 KVAYKLAVPSNLVVIVPQTGELLLTGDPPS-----DDVEYELTVEAHDLQSP----SRY- 200
+ + I + LL + + +V+ A +L +R+
Sbjct: 221 S-----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 201 -------AREPAQVWLQFNSPVLQDEQLLQMI-----DRKSEAPHRIEKRR------VTR 242
A + L +S L +++ ++ R + P + +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 243 AVRP-TKRIDFSETDGEMEGRIVF-----ALEKETEREKFK---IRDENPWIT 286
++R D + + + LE R+ F + + I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Score = 37.9 bits (87), Expect = 0.004
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 54/135 (40%)
Query: 208 WL------QFNSPVLQDEQLLQMIDRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEG 261
+L + P + ++ DR K V+R ++P ++
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKL----------- 140
Query: 262 RIVFALEKETEREKFKIRDENPWITVDENG---------------DVRVKKRWDFEELGP 306
R+ + +D G +V+ + DF+
Sbjct: 141 -----------RQALLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFK---- 183
Query: 307 EKTIDFWVTINNQAT 321
I FW+ + N +
Sbjct: 184 ---I-FWLNLKNCNS 194
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI
BIG-open NESG, cell WALL, hydrolase,
peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Length = 103
Score = 30.2 bits (68), Expect = 0.26
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 64 VTSGDIDREEVAQYSLVITATDVKGINKAETHVTVDVLDEN---DNSPVFSQKVY 115
G++D + Y L T TD KG ++ TV V ++ P+ +
Sbjct: 48 KVDGEVDTTKAGTYVLTYTVTDSKG-HEVTAKQTVTVKVREEVKNDKPILEHHHH 101
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.65
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 226 DRKSEAPHRIEKRRVTRAVRPTKRIDFSETDGEMEGRIVFALEK-ETEREKF-KIRDENP 283
DR ++ P I K R + KR+ E D + EK + + E++ + + E
Sbjct: 78 DRLTQEPESIRKWREEQR----KRL--QELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 284 WITVDEN 290
N
Sbjct: 132 EKNKINN 138
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 27.5 bits (62), Expect = 2.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 13/58 (22%)
Query: 56 ESKSGVLLVTSGDIDREEV----AQYSL---VITATDVKGINKAETHVTVDVLDENDN 106
++G+L V + IDREE+ A+ S+ VI ++ HV V+V D NDN
Sbjct: 52 NLQNGILFV-NSRIDREELCGRSAECSIHLEVIVDRPLQVF-----HVEVEVRDINDN 103
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics,
PR structure initiative; 2.01A {Porphyromonas
gingivalis} SCOP: a.287.1.2
Length = 133
Score = 26.6 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 50 EIRNSTESKSGVLLVTSGDIDREEVAQYSLVIT 82
E + S GV++ + GDID E+A ++L+ T
Sbjct: 82 ERKKYVASYLGVIMASDGDIDDNELALWTLIST 114
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 27.3 bits (61), Expect = 8.3
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 58 KSGVLLVTSGDIDREEVAQYSLVITAT-------DVKGINKAETHVTVDVLDEND 105
+GV L + + +++ + I A+ + GI+ + +DVL +
Sbjct: 437 VTGVTLKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKA 491
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.372
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,913,420
Number of extensions: 297800
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 100
Length of query: 325
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 231
Effective length of database: 4,077,219
Effective search space: 941837589
Effective search space used: 941837589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)