RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2920
(325 letters)
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 38.5 bits (88), Expect = 1e-04
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 103 ENDNSPVFSQKVYRFIV------GDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKL 156
+NDN P F+Q V+R V G ++++ S G +S +
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ----DPE 56
Query: 157 AVPSNLVVIVPQTGELLLTGDPPSDDV--EYELTVEAHDLQSPSRYAREPAQV 207
NL I +TG + L G + EY LTV+A DL+ A +
Sbjct: 57 EPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAII 109
Score = 37.0 bits (84), Expect = 6e-04
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 1 MENSKSGTGV-KGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKS 59
E + GT V + + ++ YSI + + + ++
Sbjct: 18 REGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLF--------TINRET 69
Query: 60 GVLLVTSGDIDREEVAQYSLVITATDV-KGINKAETHVTVDVLD 102
GV+ + +DRE+ +Y+L + ATD+ E + + D
Sbjct: 70 GVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/100 (11%), Positives = 25/100 (25%)
Query: 31 SITQGNDNHTFALKNPTTHEIRNSTESKSGVLLVTSGDIDREEVAQYSLVITATDVKGIN 90
+ ++ + + V + Q +I A D +
Sbjct: 31 PLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQE 90
Query: 91 KAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNV 130
K + V + P+ IV + + +S
Sbjct: 91 KWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGA 130
Score = 29.2 bits (64), Expect = 0.36
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 102 DENDNSPVFSQKVYRFIV 119
+ F + VY ++
Sbjct: 5 EIALCKTGFPEDVYSAVL 22
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 33.2 bits (74), Expect = 0.011
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 1 MENSKSGTGVKGLPILVASSHKHPHQLVRYSITQGNDNHTFALKNPTTHEIRNSTESKSG 60
E SK GT V + + A + ++RY I + + +++G
Sbjct: 17 PEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTP--------SPNMFTINNETG 68
Query: 61 VLLVTSGDIDREEVAQYSLVITATDVKGINK----AETHVTVDVLD 102
++ + +DRE+V QY+L+I ATD++G + V D
Sbjct: 69 DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 32.8 bits (73), Expect = 0.016
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 23/112 (20%)
Query: 104 NDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNLV 163
NDN P F +V+ V S + + +V+A DAD + +
Sbjct: 1 NDNRPEFLHQVWNGSV-----PEGSKP-----GTYVMTVTAIDADDPNALNGMLRYRIVS 50
Query: 164 VIVPQTGELLLTGDPPSDDV-------------EYELTVEAHDLQSPSRYAR 202
+ T + + D+ +Y L ++A D++ Y
Sbjct: 51 QAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGL 102
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 33.0 bits (74), Expect = 0.012
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 19/106 (17%)
Query: 105 DNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDAD----GDKVAYKLAVPS 160
+ +P F V R V S + + I S+ A D D + P+
Sbjct: 1 NEAPFFVPAVSRVDV-----SEDLSR-----GEKIISLVAQDPDKQQIQKLSYFIGNDPA 50
Query: 161 NLVVIVPQTGELLLTG-----DPPSDDVEYELTVEAHDLQSPSRYA 201
+ + G + G + Y + + D
Sbjct: 51 RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG 96
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 31.2 bits (69), Expect = 0.045
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 104 NDNSPVFSQKVYRFIV--GDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSN 161
NDN P F+Q+V+ V G + + VS + + +A A N
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 162 LVVIVPQTGELLLTGDPPSDDV--EYELTVEAHDLQSPSRYA 201
+ + TG + + + Y L V+A DLQ
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLST 102
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 30.7 bits (68), Expect = 0.082
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 22/101 (21%)
Query: 104 NDNSPVFSQKVYRFIVGDLKSSLNSNVSHWKKFSSIGSVSATDADGDKVAYKLAVPSNL- 162
NDN+P+F K Y +V ++ + + +S TD D AV
Sbjct: 2 NDNAPIFDPKTYTALV--PENEIG---------FEVQRLSVTDLDMPGTPAWQAVYKIRV 50
Query: 163 -------VVIVPQTGELLLTGDPPSDDV---EYELTVEAHD 193
+ P++ + +LT D +Y L + +
Sbjct: 51 NEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVEN 91
Score = 28.0 bits (61), Expect = 0.63
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 63 LVTSGDIDREEVAQYSLVITATDVKGINK----AETHVTVDVLD 102
L T+ +D E QY L IT + + + + VTV V D
Sbjct: 69 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 29.3 bits (64), Expect = 0.23
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 70 DREEVAQYSLVITATDVKGINKAETHVTVDVLDENDNSPV 109
+ + YS+ + +D + N T V V +
Sbjct: 67 QQLKKGDYSIYVLLSDAQN-NPQLTVVNATVCSCEGKAIK 105
Score = 27.3 bits (59), Expect = 1.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 104 NDNSPVFSQKVYRF 117
NDN PV S +V+
Sbjct: 1 NDNGPVPSPRVFTM 14
>d2itea1 b.1.28.1 (A:64-184) Iron-regulated surface determinant
protein A, IsdA {Staphylococcus aureus [TaxId: 1280]}
Length = 121
Score = 27.0 bits (60), Expect = 1.6
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 5/51 (9%)
Query: 81 ITATDVKGINKAETHVTVDVLDENDNSPVFSQKVYRFIVGDLKSSLNSNVS 131
N E TV ++ ++ + V SL + V
Sbjct: 50 WKEYKFYNANNQELATTVVNDNKKADT-----RTINVAVEPGYKSLTTKVH 95
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108
{Porphyromonas gingivalis [TaxId: 837]}
Length = 132
Score = 26.6 bits (58), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 50 EIRNSTESKSGVLLVTSGDIDREEVAQYSLVIT 82
E + S GV++ + GDID E+A ++L+ T
Sbjct: 82 ERKKYVASYLGVIMASDGDIDDNELALWTLIST 114
>d2p5zx1 b.40.8.1 (X:378-468) Hypothetical protein c3393
{Escherichia coli o6 [TaxId: 217992]}
Length = 91
Score = 25.9 bits (57), Expect = 3.0
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 280 DENPWITVDENGDVRVKKRWDFEELGPEKT 309
+ + +D++G RV +D + P
Sbjct: 17 KNDIYAHIDKDGRYRVNLDFDRDTWKPGYE 46
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 25.6 bits (56), Expect = 8.0
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 255 TDGEMEGRIVFALEKETEREKFKIRDENPWITVDENGDVRVKKRWDFEEL 304
DG+M GR++ + + + E+ + E + + + K ++
Sbjct: 226 LDGDMNGRLLARHDVKGDNEENRRIGEQ-ELARCKAMGIEAGKVLRLGDM 274
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 25.5 bits (56), Expect = 9.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 251 DFSETDGEMEGRIVFALEKETER 273
S T+G+ +GR +F +K R
Sbjct: 89 HMSFTEGKYDGRFLFMNDKANTR 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.130 0.372
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,178,147
Number of extensions: 55062
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 21
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)