BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2921
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
 pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
 pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
 pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
 pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
 pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
 pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
 pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
 pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
 pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
 pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
 pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
 pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
 pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
 pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
 pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
 pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
 pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
          Length = 491

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 53  KGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDAS 112
           K G+ +D   LI  +L  K  +S Q+PK  +   +      +    +E+LK +VA+  AS
Sbjct: 192 KSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEMLKDMVAEIKAS 251


>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
 pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
          Length = 491

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 53  KGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDAS 112
           K G+ +D   LI  +L  K  +S Q+PK  +   +      +    +E+LK +VA+  AS
Sbjct: 192 KSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEMLKDMVAEIKAS 251


>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
 pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
 pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
           Methanococcus Maripaludis
          Length = 521

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 53  KGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDAS 112
           K G+ +D   LI  +L  K  +S Q+PK  +   +      +    +E+LK +VA+  AS
Sbjct: 198 KSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEMLKDMVAEIKAS 257


>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
 pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
 pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
          Length = 491

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 53  KGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDAS 112
           K G+ +D   LI  +L  K  +S Q+PK  +   +      +    +E+LK +VA+  AS
Sbjct: 192 KSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEMLKDMVAEIKAS 251


>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein
          Length = 113

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 11/52 (21%), Positives = 31/52 (59%)

Query: 102 LKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKE 153
           L+A++ + +  E ++ R++++ ++ E+L +   R+GV +  + I  +   K+
Sbjct: 62  LRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,273,732
Number of Sequences: 62578
Number of extensions: 322424
Number of successful extensions: 902
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 18
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)