Query psy2921
Match_columns 305
No_of_seqs 277 out of 1791
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 21:01:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 2.7E-28 9.3E-33 206.0 16.8 173 30-225 2-177 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 1.2E-23 4E-28 167.6 12.5 129 26-163 3-132 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.8E-21 6.1E-26 156.9 6.7 131 30-164 3-138 (143)
4 2rpb_A Hypothetical membrane p 99.7 2E-17 6.9E-22 127.7 7.5 109 36-153 4-113 (113)
5 2zuo_A MVP, major vault protei 98.4 5.4E-05 1.9E-09 74.5 21.9 137 17-158 479-654 (861)
6 2kk7_A V-type ATP synthase sub 69.1 8.3 0.00028 24.3 4.4 14 187-200 26-39 (52)
7 2b5u_A Colicin E3; high resolu 56.1 56 0.0019 30.5 9.0 35 134-168 276-310 (551)
8 2zuo_A MVP, major vault protei 45.6 1.1E+02 0.0037 30.6 9.7 26 177-202 725-750 (861)
9 3v6i_B V-type ATP synthase, su 42.7 92 0.0031 22.4 7.3 21 173-193 31-51 (105)
10 2k6i_A Uncharacterized protein 41.8 37 0.0013 21.7 3.9 17 176-192 33-49 (56)
11 3v6i_B V-type ATP synthase, su 41.1 97 0.0033 22.2 6.8 21 175-195 22-42 (105)
12 3sbt_B A1 cistron-splicing fac 36.3 12 0.00041 33.7 1.4 41 232-280 4-45 (363)
13 2k6i_A Uncharacterized protein 33.0 77 0.0026 20.2 4.3 25 177-203 23-47 (56)
14 2kk7_A V-type ATP synthase sub 28.7 1.1E+02 0.0037 19.0 6.5 20 174-193 26-45 (52)
15 2acm_B Mucin-1; auto-catalytic 28.6 92 0.0031 19.7 4.1 22 132-153 31-52 (55)
16 3bk6_A PH stomatin; archaea, t 20.9 2.4E+02 0.0083 22.0 6.6 64 120-191 88-152 (188)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=2.7e-28 Score=206.00 Aligned_cols=173 Identities=21% Similarity=0.302 Sum_probs=143.6
Q ss_pred cccceEEEEeeeeeeecce-eeecCCCCcceeEEEEEEEEEEECCCCCCHHHHHHHhcCcccccccchhHHHHHHHHhcc
Q psy2921 30 WVQRPVIFDIRSRPRNVPV-ITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQ 108 (305)
Q Consensus 30 ~~~~v~~~~~~~~~~~~~~-~~~TkDg~~~~~v~v~~~v~yri~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~ 108 (305)
|++++..+|+|.++++++. .+.|+| +++|.++++++||| .|| ..++.+ ..++.+. +.+.+++++|+++|+
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD---~~~V~v~~~v~yrI-~dp---~~~~~~-v~~~~~~-i~~~~~~~lR~vig~ 72 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKD---NVPVRVNAVVYFRV-VDP---VKAVTQ-VKNYIMA-TSQISQTTLRSVIGQ 72 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTT---SCEEEEEEEEEEEE-SCH---HHHHHS-SSCHHHH-HHHHHHHHHHHHHHT
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCC---CCEEEEEEEEEEEE-CCH---HHHHHH-hcCHHHH-HHHHHHHHHHHHHcc
Confidence 5789999999999999876 469999 78999999999999 443 344432 2455554 889999999999999
Q ss_pred CChHHHhhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2921 109 FDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIIS 188 (305)
Q Consensus 109 ~~~~e~~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A~qeae~~~~~i~~Aeaea~a~i~~ 188 (305)
|+++|++++|++|+..+.+.|++.+++|||.|.+|.|++|.||+++.++|++++. |+.++++.+++
T Consensus 73 ~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~--------------Aere~~A~i~~ 138 (188)
T 3bk6_A 73 AHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAE--------------AERERRARITL 138 (188)
T ss_dssp SCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987542 56677888999
Q ss_pred hHHHHHHHHHHHHhhcc--cCchhHHHHHHHHHHHHHHH
Q psy2921 189 AEGDAQAAQLISKSLTE--AGDGLVELRRIEAAESIAYQ 225 (305)
Q Consensus 189 Ae~eA~a~~~~a~a~~~--~~~~~~~~~~lea~~~~~~~ 225 (305)
|+|+++|++++++|... .+|.++++|+||++.+++..
T Consensus 139 Aege~~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~~ 177 (188)
T 3bk6_A 139 AEAERQAAEKLREAAEIISEHPMALQLRTLQTISDVAGD 177 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHTTC-------
T ss_pred hHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence 99999999999887532 38999999999999999874
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.90 E-value=1.2e-23 Score=167.61 Aligned_cols=129 Identities=11% Similarity=0.234 Sum_probs=97.4
Q ss_pred EEcccccceEEEEeeeeeeeccee-eecCCCCcceeEEEEEEEEEEECCCCCCHHHHHHHhcCcccccccchhHHHHHHH
Q psy2921 26 FFVPWVQRPVIFDIRSRPRNVPVI-TGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKA 104 (305)
Q Consensus 26 ~~~P~~~~v~~~~~~~~~~~~~~~-~~TkDg~~~~~v~v~~~v~yri~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~ 104 (305)
+..||++++.++|+|.++++++.+ +.|+| +..|.|++.++||| .|| .+++ |..+..+..+...+++++|+
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D---~~~v~Vd~~v~yrI-~Dp---~~~~--~~v~~~~~~l~~~~~~~lR~ 73 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKD---SVTISVDGVVYYRV-QNA---TLAV--ANITNADSATRLLAQTTLRN 73 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTT---CCEEEEEEEEEEEE-SCH---HHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCC---CCEEEEEEEEEEEE-eeh---HHhH--hhhhhHHHHHHHHHHHHHHH
Confidence 678999999999999999998765 69999 79999999999999 454 4555 35445555599999999999
Q ss_pred HhccCChHHHhhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHHHHHHHHHHHH
Q psy2921 105 VVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQV 163 (305)
Q Consensus 105 ~~~~~~~~e~~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~ 163 (305)
++|++++++++++|++|+.++++.+++.+++|||+|.+|+|++++||+++.+||++++.
T Consensus 74 vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~ 132 (133)
T 4fvg_A 74 ALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAE 132 (133)
T ss_dssp HHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC----------
T ss_pred HhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999986654
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.84 E-value=1.8e-21 Score=156.86 Aligned_cols=131 Identities=8% Similarity=0.031 Sum_probs=114.8
Q ss_pred cccceEEEEeeeeeeeccee-eecCCCCcceeEEEEEEEEEEECC-CCCCHHHHHHHhcC---cccccccchhHHHHHHH
Q psy2921 30 WVQRPVIFDIRSRPRNVPVI-TGSKGGSEMDTVVLIPTLLFKKGS-ISNQLPKIFSMLGV---DYDERVLPSITTEVLKA 104 (305)
Q Consensus 30 ~~~~v~~~~~~~~~~~~~~~-~~TkDg~~~~~v~v~~~v~yri~~-~~~~~~~~~~~~~~---~~~~~~l~~~~~~~lr~ 104 (305)
|++++.++|+|.++++++.+ +.|+| +.++.||+.++||| . +|..+.....+|.. +..+.++.+.+++.+|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD---~v~v~Vdavv~~rI-~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~ 78 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAE---GVALTVTGVAQVKI-MTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRS 78 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSS---SCEEEECCEEEEEE-CCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCC---CCEEEEEEEEEEEE-CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999876 59999 79999999999999 5 57776555555532 33455688899999999
Q ss_pred HhccCChHHHhhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHHHHHHHHHHHHH
Q psy2921 105 VVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKEFTQAVELKQVA 164 (305)
Q Consensus 105 ~~~~~~~~e~~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A 164 (305)
++|+++++|++++|++|+..+.+.+++.+++|||+|.+|.|++|++|+++.+||.+++.|
T Consensus 79 viG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~A 138 (143)
T 1win_A 79 ILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS 138 (143)
T ss_dssp HHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999866544
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.70 E-value=2e-17 Score=127.73 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=95.6
Q ss_pred EEEeeeeeeecce-eeecCCCCcceeEEEEEEEEEEECCCCCCHHHHHHHhcCcccccccchhHHHHHHHHhccCChHHH
Q psy2921 36 IFDIRSRPRNVPV-ITGSKGGSEMDTVVLIPTLLFKKGSISNQLPKIFSMLGVDYDERVLPSITTEVLKAVVAQFDASEL 114 (305)
Q Consensus 36 ~~~~~~~~~~~~~-~~~TkDg~~~~~v~v~~~v~yri~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~~~~e~ 114 (305)
++|+|.++++++. .+.|+| +++|.+++.++||| .||.+ ++.++ .++. ..+.+.+++++|+++|+++++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D---~~~v~v~~~v~~rI-~dp~~---~~~~v-~~~~-~~l~~~~~~~lR~vig~~~l~ei 74 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKD---NVVVTVDAVVYYQV-IDPVK---AVYNV-SDFL-MAIVKLAQTNLRAIIGEMELDET 74 (113)
T ss_dssp CCCCCCEEEECCCEEEECTT---SCEEEECEEEEEEE-SCTTT---CTTTT-THHH-HHHHHHHHHHHHHHHTSCCTTHH
T ss_pred EEeeeEEEEecCcceeEeCC---CCEEEEEEEEEEEE-CCHHH---HHHhc-CCHH-HHHHHHHHHHHHHHHhcCcHHHH
Confidence 5789999999876 569999 78999999999999 67764 44333 2444 44999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEeeeccCHH
Q psy2921 115 ITQRELVSQKVNEDLTERAKRFGVILDDISITHLTFGKE 153 (305)
Q Consensus 115 ~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 153 (305)
+++|++|+..+.+.+++.+++|||+|.+|.|+++.||++
T Consensus 75 ~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 75 LSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.38 E-value=5.4e-05 Score=74.49 Aligned_cols=137 Identities=8% Similarity=0.078 Sum_probs=88.7
Q ss_pred eeeecCceEEEcccccceEEEEee---------eeee---------ecceeeecCCCCcceeEEEEEEEEEEECC-CCCC
Q psy2921 17 NAVVGEGTHFFVPWVQRPVIFDIR---------SRPR---------NVPVITGSKGGSEMDTVVLIPTLLFKKGS-ISNQ 77 (305)
Q Consensus 17 ~~~~~pG~~~~~P~~~~v~~~~~~---------~~~~---------~~~~~~~TkDg~~~~~v~v~~~v~yri~~-~~~~ 77 (305)
+.+.||-+.+.-|- +.+..+++. .+++ .-.+.+-|+| ...+.+.++++|+... ||.+
T Consensus 479 RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~D---hArL~L~LsYnW~F~~~d~~~ 554 (861)
T 2zuo_A 479 RVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETAD---HARLQLQLAYNWHFELKNRND 554 (861)
T ss_dssp EEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTT---CCEEEEEEEEEEEECCTTTTC
T ss_pred EEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcC---ceEEEEEEEEEEEEeccCCCC
Confidence 35678888777775 444444331 1111 1123457899 7888899999999954 6655
Q ss_pred HHHHHHHhc-CcccccccchhHHHHHHHHhccCChHHHhhhHHHHHHHHHHHHHH----------------H--HHhcCe
Q psy2921 78 LPKIFSMLG-VDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTE----------------R--AKRFGV 138 (305)
Q Consensus 78 ~~~~~~~~~-~~~~~~~l~~~~~~~lr~~~~~~~~~e~~~~R~~i~~~i~~~l~~----------------~--l~~~Gi 138 (305)
....-.-|. .|+... +=..+.+-+|..+++.+++++..+-..|-...-=..++ . +...|+
T Consensus 555 ~~~~~k~Fsv~DFvGd-~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~l 633 (861)
T 2zuo_A 555 PAEAAKLFSVPDFVGD-ACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGL 633 (861)
T ss_dssp HHHHHGGGSSSSHHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCE
T ss_pred hhhhhhhccCCchHHH-HHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCe
Confidence 443333334 577666 67788999999999999999997766653322111111 1 356799
Q ss_pred EEEEEEEeeeccC-HHHHHHH
Q psy2921 139 ILDDISITHLTFG-KEFTQAV 158 (305)
Q Consensus 139 ~v~~v~I~~i~~p-~~i~~ai 158 (305)
.|++|.|+++.|- +...+++
T Consensus 634 vitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 634 VVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp EEEEEEEEEEEESSHHHHHHH
T ss_pred EEEEEeeeeecccCHHHHHHH
Confidence 9999999999874 4555555
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=69.14 E-value=8.3 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=5.2
Q ss_pred HHhHHHHHHHHHHH
Q psy2921 187 ISAEGDAQAAQLIS 200 (305)
Q Consensus 187 ~~Ae~eA~a~~~~a 200 (305)
+.++++++|.+++.
T Consensus 26 Il~eA~~eA~~Ii~ 39 (52)
T 2kk7_A 26 IISEAEAEKAKILE 39 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 7
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=56.08 E-value=56 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=29.4
Q ss_pred HhcCeEEEEEEEeeeccCHHHHHHHHHHHHHHHHH
Q psy2921 134 KRFGVILDDISITHLTFGKEFTQAVELKQVAQQEA 168 (305)
Q Consensus 134 ~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A~qea 168 (305)
+..|++-.-|.+.+|-.|.++.+..++..+++||.
T Consensus 276 e~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 276 KDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GGGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 35699999999999999999999888776666654
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=45.64 E-value=1.1e+02 Score=30.60 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy2921 177 KAEQSKQAAIISAEGDAQAAQLISKS 202 (305)
Q Consensus 177 ~Aeaea~a~i~~Ae~eA~a~~~~a~a 202 (305)
.|++.+++..+++|++.+.+++.++|
T Consensus 725 eA~a~aea~~Ie~ea~v~~a~l~a~a 750 (861)
T 2zuo_A 725 EAESRAEAARIEGEGSVLQAKLKAQA 750 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhHH
Confidence 34444555555555554444444443
No 9
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=42.72 E-value=92 Score=22.38 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q psy2921 173 FLVEKAEQSKQAAIISAEGDA 193 (305)
Q Consensus 173 ~~i~~Aeaea~a~i~~Ae~eA 193 (305)
..+..|++++.+...+|+..+
T Consensus 31 ~~v~~AEAeA~ril~eAe~~a 51 (105)
T 3v6i_B 31 ERVKRAEAEAKALLEEAEAKA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444444333
No 10
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=41.76 E-value=37 Score=21.66 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy2921 176 EKAEQSKQAAIISAEGD 192 (305)
Q Consensus 176 ~~Aeaea~a~i~~Ae~e 192 (305)
..|+.+++..+..|..+
T Consensus 33 eeA~~ea~~ii~eAree 49 (56)
T 2k6i_A 33 EEAKNRAEQIKAEAIEE 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=41.13 E-value=97 Score=22.24 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q psy2921 175 VEKAEQSKQAAIISAEGDAQA 195 (305)
Q Consensus 175 i~~Aeaea~a~i~~Ae~eA~a 195 (305)
+..|..++++.+.+|+++|.+
T Consensus 22 lE~Ar~eA~~~v~~AEAeA~r 42 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAEAEAKA 42 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665555443
No 12
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A
Probab=36.26 E-value=12 Score=33.72 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=25.9
Q ss_pred eeeecCccchhhcccccccccCCCceEEEEecccccccccccCc-ceeee
Q psy2921 232 VSYLPSGNNILFNRSYTSNEMDGGHRAVIFDRFTGIKNAVVGEG-THFFV 280 (305)
Q Consensus 232 ~iil~~~~~~l~~l~~s~~~V~~g~~av~~~~~g~~~~~~~~~G-~~~~~ 280 (305)
++++....+..+.+-...|.+..|+ +|.||+. ..|| +||-.
T Consensus 4 lllldlP~gt~~GID~~sftv~~g~------~F~GIK~--IPpG~~Hfih 45 (363)
T 3sbt_B 4 VPFTSAPIEVTIGIDQYSFNVKENQ------PFHGIKD--IPIGHVHVIH 45 (363)
T ss_dssp EEBSCCCSCEEEEETTEEEEECTTC------CCCEEEE--ECTTSCEEEE
T ss_pred EEecCCCCCcEEeeeccEEEcCCCC------CCcceec--CCCCCCEEEE
Confidence 3444433344455555777877663 8999986 7899 77643
No 13
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=33.03 E-value=77 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhh
Q psy2921 177 KAEQSKQAAIISAEGDAQAAQLISKSL 203 (305)
Q Consensus 177 ~Aeaea~a~i~~Ae~eA~a~~~~a~a~ 203 (305)
.||.+|+..+.+|+ .++.+++.+|-
T Consensus 23 eAE~~A~~iVeeA~--~ea~~ii~eAr 47 (56)
T 2k6i_A 23 LAEEQAVKEIEEAK--NRAEQIKAEAI 47 (56)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45555555555444 44555555553
No 14
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=28.74 E-value=1.1e+02 Score=19.00 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q psy2921 174 LVEKAEQSKQAAIISAEGDA 193 (305)
Q Consensus 174 ~i~~Aeaea~a~i~~Ae~eA 193 (305)
.+..|+.+++..+..|+.+|
T Consensus 26 Il~eA~~eA~~Ii~eA~~~A 45 (52)
T 2kk7_A 26 IISEAEAEKAKILEKAKEEA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445544444444444444
No 15
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=28.62 E-value=92 Score=19.71 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=15.1
Q ss_pred HHHhcCeEEEEEEEeeeccCHH
Q psy2921 132 RAKRFGVILDDISITHLTFGKE 153 (305)
Q Consensus 132 ~l~~~Gi~v~~v~I~~i~~p~~ 153 (305)
....|.+.|.+|.++|+.+|..
T Consensus 31 a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 31 AASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHCCCEEEEEEECC-----
T ss_pred ccccccceecceeEEeccCCCc
Confidence 3458999999999999999864
No 16
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=20.92 E-value=2.4e+02 Score=22.02 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHH-HHhcCeEEEEEEEeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy2921 120 LVSQKVNEDLTER-AKRFGVILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQSKQAAIISAEG 191 (305)
Q Consensus 120 ~i~~~i~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~i~~ai~~~~~A~qeae~~~~~i~~Aeaea~a~i~~Ae~ 191 (305)
++.+.+.+.+... +.=..+.|.++.+.. .+-+.+.+.+++.+.+++ .+..|++++++..+.|++
T Consensus 88 ~i~~~l~~~~~~~GI~v~~v~I~~i~~p~-ev~~a~~~~~~Aere~~A-------~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIKVTAVEIKDVELPA-GMQKAMARQAEAERERRA-------RITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHTGGGTEEEEEEEEEEEEEET-THHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Confidence 4444455555431 233457888888764 456667777776665432 355688888887777665
Done!