RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2921
         (305 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 143

 Score = 48.5 bits (115), Expect = 7e-08
 Identities = 10/84 (11%), Positives = 31/84 (36%)

Query: 85  LGVDYDERVLPSITTEVLKAVVAQFDASELITQRELVSQKVNEDLTERAKRFGVILDDIS 144
             V   + V+       L++++      ++   R+  ++ V E       R G+ +   +
Sbjct: 59  KNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFT 118

Query: 145 ITHLTFGKEFTQAVELKQVAQQEA 168
           I  +    ++  ++   Q +   +
Sbjct: 119 IKDVYDKVDYLSSLGKTQTSGPSS 142


>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 97

 Score = 26.5 bits (58), Expect = 1.6
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 175 VEKAEQSKQAAIISAEGDAQAAQLISKSLTEAGDGLVELRRIEAAESIAYQLSRSRQVSY 234
           V  + +  Q   ISA G++   Q I++++   G+  V    +E  + +  ++    +V+ 
Sbjct: 2   VNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVI--TVEENKGMETEVEVVERVAK 59

Query: 235 LPSGNNILFNRSYTSNEMD 253
           L  G  ++     T  E+ 
Sbjct: 60  LAGGVAVIRVGGMTEIEVK 78


>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia
           coli [TaxId: 562]}
          Length = 97

 Score = 26.1 bits (57), Expect = 2.5
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 175 VEKAEQSKQAAIISAEGDAQAAQLISKSLTEAG 207
              ++   Q   ISA  D    +LI++++ + G
Sbjct: 2   CSDSKAIAQVGTISANSDETVGKLIAEAMDKVG 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,089,087
Number of extensions: 49465
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 6
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)