Query psy2923
Match_columns 141
No_of_seqs 118 out of 497
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:03:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 9.4E-44 2E-48 304.3 13.1 138 2-140 31-170 (467)
2 KOG3776|consensus 100.0 4.4E-40 9.5E-45 283.9 11.7 137 2-140 42-180 (507)
3 PF07569 Hira: TUP1-like enhan 58.6 12 0.00027 29.2 3.3 60 25-87 33-98 (219)
4 PF04022 Staphylcoagulse: Stap 43.4 19 0.00041 19.1 1.5 14 61-74 13-26 (27)
5 KOG0938|consensus 41.5 28 0.00061 29.9 3.0 28 2-29 382-409 (446)
6 PF09200 Monellin: Monellin; 35.9 17 0.00037 21.3 0.6 20 45-64 4-24 (43)
7 PHA02757 hypothetical protein; 24.7 49 0.0011 21.6 1.4 20 36-55 4-28 (75)
8 PF03393 Pneumo_matrix: Pneumo 24.5 5.7 0.00012 31.7 -3.5 45 26-70 201-247 (252)
9 PF07356 DUF1481: Protein of u 24.3 60 0.0013 25.4 2.1 17 61-77 68-84 (195)
10 PF02056 Glyco_hydro_4: Family 22.1 55 0.0012 25.1 1.5 14 25-38 137-150 (183)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=9.4e-44 Score=304.28 Aligned_cols=138 Identities=44% Similarity=0.686 Sum_probs=133.0
Q ss_pred eeeecCCCccccccccCCcceeEEEEEEeccChHHHhcCCCceeeEEeccEEEEeeeeeeeeEeCCCC-cEEeccCCceE
Q psy2923 2 KVKMSEGSESLDLWATPPVELFLKVYLFNVTNREAFLAGKEKLRVQEVGPYVYREGMAHVNVSMNDNG-TVTATPIHPLT 80 (141)
Q Consensus 2 ~~~l~~gs~~~~~W~~pp~~~~~~~y~FNvTN~~evl~g~~kp~v~E~GPy~Y~e~~~k~nv~~~~n~-tvsy~~~~~~~ 80 (141)
+++|++||.+|+.|++||+|++++||+|||||||||++|++||+|+|+|||+|+|+++|.|++|++|+ ||+|+++++|+
T Consensus 31 ~~~L~~~s~~~~~W~~~p~p~~~~~y~fNvTNp~ev~~~g~kP~~~EvGPY~y~e~~~k~nv~~~~~~~tvsY~~~~~~~ 110 (467)
T PF01130_consen 31 QLVLKPGSDSYDNWKKPPVPIYFKFYFFNVTNPEEVLNGGAKPNVQEVGPYVYREYREKVNVTFNDNGSTVSYRQKRTFF 110 (467)
T ss_pred CcEECCCChhHhhhhcCCCccEEEEEEEeccCHHHHhCcCCCceEEEeCCEEEEeeeeeeeeEEcCCCcEEEEEeeeeEE
Confidence 68999999999999999999999999999999999999338999999999999999999999999988 79999999999
Q ss_pred EccCCCCC-CCCCeeeehhHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCcceeeeeecCCC
Q psy2923 81 WVPELSNG-KEDDILILPNIALLSFANVMAKASLLTRMGVNLLIKQTKRKMENYSRTLGEK 140 (141)
Q Consensus 81 F~p~~S~~-~~~D~it~~N~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~~t~tv~e~ 140 (141)
|+|++||+ +++|.||+||+++++++.++++.+++++.+++.+++..++++|+ ++||+|+
T Consensus 111 F~~~~S~~~~~~d~it~~N~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~fv-~~tv~e~ 170 (467)
T PF01130_consen 111 FDPELSCGCSEDDTITTPNIPLLGAASLVRNMSPFVKSLINLLLNSLGEKLFV-TRTVREL 170 (467)
T ss_pred eccccCCCCCccceEEeccHHHhhhhhhhccccHHHHHHHHHhhhccCCcceE-eccHHHh
Confidence 99999999 68899999999999999999999999999999999999999997 9999997
No 2
>KOG3776|consensus
Probab=100.00 E-value=4.4e-40 Score=283.89 Aligned_cols=137 Identities=36% Similarity=0.614 Sum_probs=130.8
Q ss_pred eeeecCCCccccccccCCcceeEEEEEEeccChHHHhcCCCceeeEEeccEEEEeeeeeeeeEeCCCCcEEecc-CCceE
Q psy2923 2 KVKMSEGSESLDLWATPPVELFLKVYLFNVTNREAFLAGKEKLRVQEVGPYVYREGMAHVNVSMNDNGTVTATP-IHPLT 80 (141)
Q Consensus 2 ~~~l~~gs~~~~~W~~pp~~~~~~~y~FNvTN~~evl~g~~kp~v~E~GPy~Y~e~~~k~nv~~~~n~tvsy~~-~~~~~ 80 (141)
+++|+|||.++++|.+||.+.+++||+|||||||||++|++||+|+|+|||+|+|.+.|+|+.|++|+|++|.+ +|+|+
T Consensus 42 ~~~L~~gs~~~~~W~~pp~~~~~~~yiFNvTNpde~~~~~~kp~v~EvGPyvy~E~~~K~~~~f~~n~tv~f~~~~k~~~ 121 (507)
T KOG3776|consen 42 NVVLRPGSDAFESWLNPPYPIYLNFYIFNVTNPDEFLSGGAKPNVQEVGPYVYREIEQKVNIDFNENNTVSFYQNRKTYV 121 (507)
T ss_pred ceeeCCCchhhhhhhcCCCccEEEEEEEecCCHHHhhCcCCCCceEeeCCeEEEEEecccceeeccCCcEEEEeeccEEE
Confidence 68999999999999999999999999999999999999558999999999999999999999999999977776 99999
Q ss_pred EccCCCCCCC-CCeeeehhHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCcceeeeeecCCC
Q psy2923 81 WVPELSNGKE-DDILILPNIALLSFANVMAKASLLTRMGVNLLIKQTKRKMENYSRTLGEK 140 (141)
Q Consensus 81 F~p~~S~~~~-~D~it~~N~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~~t~tv~e~ 140 (141)
|+|++||+++ +|.|++||++++|++..++... ++|.+++++++.+|+++|+ ++||+|+
T Consensus 122 F~p~~S~~~~~~d~I~~pN~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~f~-~~tV~e~ 180 (507)
T KOG3776|consen 122 FNPEESVGDCKDDKITVPNIPALGAATSVKREQ-FLRLAISIALTILGEKPFV-TVTVGEL 180 (507)
T ss_pred echhhcCCCcCcCeEEecCchhhhhhhhhhhhH-HHHHHHHHHHHHhCCCcce-EeeHHHH
Confidence 9999999998 6999999999999999998887 9999999999999999997 9999986
No 3
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.63 E-value=12 Score=29.20 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=40.1
Q ss_pred EEEEEeccChHHHhcCC-CceeeEE---eccEEEEeeeeeeeeEeCCCCc--EEeccCCceEEccCCCC
Q psy2923 25 KVYLFNVTNREAFLAGK-EKLRVQE---VGPYVYREGMAHVNVSMNDNGT--VTATPIHPLTWVPELSN 87 (141)
Q Consensus 25 ~~y~FNvTN~~evl~g~-~kp~v~E---~GPy~Y~e~~~k~nv~~~~n~t--vsy~~~~~~~F~p~~S~ 87 (141)
.+|+||+.+-.-++.+. -.|.+.- .+. .....-..+...++|. |+..+...|.|++++.|
T Consensus 33 ~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~---~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 33 LLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK---SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred eEEEEECCCCeeccCCccHHHHhcccccccC---CCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 49999999988877662 3455542 111 1111113445567897 88999999999999886
No 4
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=43.44 E-value=19 Score=19.05 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=11.2
Q ss_pred eeeEeCCCCcEEec
Q psy2923 61 VNVSMNDNGTVTAT 74 (141)
Q Consensus 61 ~nv~~~~n~tvsy~ 74 (141)
.||+=+.||+|+|-
T Consensus 13 ynvtt~~dgtvsyg 26 (27)
T PF04022_consen 13 YNVTTNQDGTVSYG 26 (27)
T ss_pred eeeEeccCceEecC
Confidence 47777889999984
No 5
>KOG0938|consensus
Probab=41.50 E-value=28 Score=29.85 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=23.4
Q ss_pred eeeecCCCccccccccCCcceeEEEEEE
Q psy2923 2 KVKMSEGSESLDLWATPPVELFLKVYLF 29 (141)
Q Consensus 2 ~~~l~~gs~~~~~W~~pp~~~~~~~y~F 29 (141)
++.|.+.+..-++|..||+.+.+++-+|
T Consensus 382 evels~Tt~nkq~WtrPPIsleFeV~MF 409 (446)
T KOG0938|consen 382 EVELSDTTQNKQQWTRPPISLEFEVPMF 409 (446)
T ss_pred EEEeccCccccccccCCCceeEEeeeee
Confidence 3567777777889999999999999887
No 6
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=35.94 E-value=17 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=13.5
Q ss_pred eeEEeccEEEE-eeeeeeeeE
Q psy2923 45 RVQEVGPYVYR-EGMAHVNVS 64 (141)
Q Consensus 45 ~v~E~GPy~Y~-e~~~k~nv~ 64 (141)
..-|+|||+|. ...-|-.|+
T Consensus 4 ~~~e~~~~~~~s~~L~r~~i~ 24 (43)
T PF09200_consen 4 KGYEYQLYVYASDKLFRADIS 24 (43)
T ss_dssp EEEECCCCEEECCCCCCCCCC
T ss_pred eEEEeeeeeehhhhhhheecc
Confidence 45689999997 444555554
No 7
>PHA02757 hypothetical protein; Provisional
Probab=24.65 E-value=49 Score=21.58 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=15.8
Q ss_pred HHhcCCCce-----eeEEeccEEEE
Q psy2923 36 AFLAGKEKL-----RVQEVGPYVYR 55 (141)
Q Consensus 36 evl~g~~kp-----~v~E~GPy~Y~ 55 (141)
|||.|+.|| .+.-.|||-|.
T Consensus 4 EflkGSskPprnvCViTPsgpfDFn 28 (75)
T PHA02757 4 EFLKGSSKPPRNVCVITPSGPFDFN 28 (75)
T ss_pred hhhcCCCCCCCCEEEEeCCCCccEE
Confidence 788887777 56778999886
No 8
>PF03393 Pneumo_matrix: Pneumovirus matrix protein; InterPro: IPR005056 The matrix proteins of Pneumovirus virus are transcriptional processivity and antitermination factor and play a crucial role in viral assembly.; GO: 0019068 virion assembly, 0019031 viral envelope; PDB: 2VQP_A 2YKD_A.
Probab=24.54 E-value=5.7 Score=31.67 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=26.3
Q ss_pred EEEEeccChHHHhc--CCCceeeEEeccEEEEeeeeeeeeEeCCCCc
Q psy2923 26 VYLFNVTNREAFLA--GKEKLRVQEVGPYVYREGMAHVNVSMNDNGT 70 (141)
Q Consensus 26 ~y~FNvTN~~evl~--g~~kp~v~E~GPy~Y~e~~~k~nv~~~~n~t 70 (141)
.-+-++|||-.+.+ |...-.+.|+|||+=+|...+.--.|..-||
T Consensus 201 ~lvmt~~~~KG~Fk~l~ag~Q~iveLG~Y~~~eSi~~v~~nW~H~~T 247 (252)
T PF03393_consen 201 ILVMTMNNPKGAFKKLGAGSQVIVELGAYVQAESISRVCRNWKHQGT 247 (252)
T ss_dssp EEEEE---SSGGGTTS-TT-EEEEE-GGG-TTS-HHHHHHHEEEEEE
T ss_pred EEEEEecCCcchhhhcCCCcEEEEeccchhhHHHHHHHHhcccccce
Confidence 45778999998864 4346788999999988877766656654444
No 9
>PF07356 DUF1481: Protein of unknown function (DUF1481); InterPro: IPR010858 This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=24.31 E-value=60 Score=25.36 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=14.6
Q ss_pred eeeEeCCCCcEEeccCC
Q psy2923 61 VNVSMNDNGTVTATPIH 77 (141)
Q Consensus 61 ~nv~~~~n~tvsy~~~~ 77 (141)
..+.|+++|+++|++++
T Consensus 68 v~lRFd~~G~avfmQr~ 84 (195)
T PF07356_consen 68 VHLRFDKDGEAVFMQRQ 84 (195)
T ss_pred EEEEECCCCCEEEEEEE
Confidence 34789999999999976
No 10
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=22.07 E-value=55 Score=25.14 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=10.6
Q ss_pred EEEEEeccChHHHh
Q psy2923 25 KVYLFNVTNREAFL 38 (141)
Q Consensus 25 ~~y~FNvTN~~evl 38 (141)
+-|++|+|||..+.
T Consensus 137 dAw~iNytNP~~~v 150 (183)
T PF02056_consen 137 DAWLINYTNPMGIV 150 (183)
T ss_dssp TSEEEE-SSSHHHH
T ss_pred CcEEEeccChHHHH
Confidence 35899999999764
Done!