Query psy2923
Match_columns 141
No_of_seqs 118 out of 497
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:03:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqp_A Matrix protein; viral p 20.8 4.8 0.00016 31.0 -3.5 45 26-70 202-248 (257)
2 3u95_A Glycoside hydrolase, fa 10.8 94 0.0032 25.9 1.5 14 25-38 152-165 (477)
3 1up7_A 6-phospho-beta-glucosid 8.4 1.3E+02 0.0046 24.5 1.5 14 25-38 134-147 (417)
4 2yh9_A Small protein A, BAME p 8.2 1.8E+02 0.0062 18.1 1.8 14 59-72 56-69 (88)
5 3m91_B Prokaryotic ubiquitin-l 8.2 73 0.0025 18.2 -0.2 9 32-40 29-37 (44)
6 3qqz_A Putative uncharacterize 8.0 2.5E+02 0.0087 21.1 2.9 26 61-86 227-254 (255)
7 2l0c_A Putative membrane prote 7.7 1.4E+02 0.0049 19.6 1.1 23 66-88 66-88 (97)
8 2wx4_A DCP1, decapping protein 7.2 3.6E+02 0.012 15.4 2.5 33 98-130 12-44 (46)
9 3n7x_A Capsid protein; icosahe 6.3 2.6E+02 0.009 21.2 2.1 26 62-87 37-64 (329)
10 2wx3_A MRNA-decapping enzyme 1 5.8 5.1E+02 0.017 15.0 3.3 29 101-129 17-45 (51)
No 1
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus} PDB: 2ykd_A
Probab=20.76 E-value=4.8 Score=31.02 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=34.3
Q ss_pred EEEEeccChHHHhc--CCCceeeEEeccEEEEeeeeeeeeEeCCCCc
Q psy2923 26 VYLFNVTNREAFLA--GKEKLRVQEVGPYVYREGMAHVNVSMNDNGT 70 (141)
Q Consensus 26 ~y~FNvTN~~evl~--g~~kp~v~E~GPy~Y~e~~~k~nv~~~~n~t 70 (141)
+-+-++|||-.... |...-.+.|+|||+=+|...+.--.|+.-||
T Consensus 202 ilvit~~~~KG~FK~l~agsQ~iveLG~Y~~~eSi~~v~~nW~H~~T 248 (257)
T 2vqp_A 202 LLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTAT 248 (257)
T ss_dssp EEEEECCCSSGGGTTSCTTCEEEEECGGGCTTSCHHHHHHHEEEEEE
T ss_pred EEEEEecCCcchHhhcCCCcEEEEeccchhhHhHHHHHHhcccccce
Confidence 45779999998864 4346688999999988888777777765554
No 2
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=10.80 E-value=94 Score=25.89 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.2
Q ss_pred EEEEEeccChHHHh
Q psy2923 25 KVYLFNVTNREAFL 38 (141)
Q Consensus 25 ~~y~FNvTN~~evl 38 (141)
+-|+.|+|||-+++
T Consensus 152 ~A~~in~tNP~~i~ 165 (477)
T 3u95_A 152 KAYLMQTANPVFEI 165 (477)
T ss_dssp TCEEEECSSCHHHH
T ss_pred CeEEEEecChHHHH
Confidence 46899999999886
No 3
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=8.45 E-value=1.3e+02 Score=24.49 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=12.6
Q ss_pred EEEEEeccChHHHh
Q psy2923 25 KVYLFNVTNREAFL 38 (141)
Q Consensus 25 ~~y~FNvTN~~evl 38 (141)
+-++.|+|||-+++
T Consensus 134 ~A~lin~TNPvdi~ 147 (417)
T 1up7_A 134 NATIVNFTNPSGHI 147 (417)
T ss_dssp CCEEEECSSSHHHH
T ss_pred CEEEEEeCChHHHH
Confidence 67899999999986
No 4
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=8.21 E-value=1.8e+02 Score=18.10 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=9.6
Q ss_pred eeeeeEeCCCCcEE
Q psy2923 59 AHVNVSMNDNGTVT 72 (141)
Q Consensus 59 ~k~nv~~~~n~tvs 72 (141)
....|.|++||.|+
T Consensus 56 ~~l~V~Fd~~g~V~ 69 (88)
T 2yh9_A 56 QTLTLTFNSSGVLT 69 (88)
T ss_dssp CEEEEEECTTSBEE
T ss_pred EEEEEEEcCCCeEE
Confidence 34577888888754
No 5
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=8.21 E-value=73 Score=18.16 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=1.9
Q ss_pred cChHHHhcC
Q psy2923 32 TNREAFLAG 40 (141)
Q Consensus 32 TN~~evl~g 40 (141)
+|+++|.+|
T Consensus 29 ~NAeeFV~~ 37 (44)
T 3m91_B 29 ENAEDFVRA 37 (44)
T ss_dssp HTC------
T ss_pred HhHHHHHHH
Confidence 566776655
No 6
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=8.04 E-value=2.5e+02 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=16.0
Q ss_pred eeeEeCCCCc--EEeccCCceEEccCCC
Q psy2923 61 VNVSMNDNGT--VTATPIHPLTWVPELS 86 (141)
Q Consensus 61 ~nv~~~~n~t--vsy~~~~~~~F~p~~S 86 (141)
+.|+|+++|+ |+=.....|.|.+..+
T Consensus 227 EGia~d~~G~lyIvsE~n~~y~f~~~~~ 254 (255)
T 3qqz_A 227 EGVAMDASGNIYIVSEPNRFYRFTPQSS 254 (255)
T ss_dssp EEEEECTTCCEEEEETTTEEEEEEC---
T ss_pred CeeEECCCCCEEEEcCCceEEEEEecCC
Confidence 5777777777 5555667777766543
No 7
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=7.73 E-value=1.4e+02 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCCCcEEeccCCceEEccCCCCC
Q psy2923 66 NDNGTVTATPIHPLTWVPELSNG 88 (141)
Q Consensus 66 ~~n~tvsy~~~~~~~F~p~~S~~ 88 (141)
.+-|+++|+-.|.--|.|..+.+
T Consensus 66 GD~G~Lt~QGTRfl~Fer~~~~~ 88 (97)
T 2l0c_A 66 GDQGTLSYKGTRFVGFVSRTPDN 88 (97)
T ss_dssp TCCEEEEEETTEEEEEECSSCGG
T ss_pred CCEEEEEEeeeeEEeeecCCCcc
Confidence 34578999999999999987665
No 8
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=7.23 E-value=3.6e+02 Score=15.37 Aligned_cols=33 Identities=3% Similarity=0.039 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCcc
Q psy2923 98 NIALLSFANVMAKASLLTRMGVNLLIKQTKRKM 130 (141)
Q Consensus 98 N~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 130 (141)
.-...++...+++-+.|+..+-.+.++++...+
T Consensus 12 ~Ql~qal~hLiknD~~Fl~~iHeAYl~sl~~~l 44 (46)
T 2wx4_A 12 TQFVQAFTYLIQNDKEFANKLHKAYLNGCSNLL 44 (46)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHh
Confidence 334567788888888888888888877765543
No 9
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=6.27 E-value=2.6e+02 Score=21.20 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=19.7
Q ss_pred eeEeCCCCc--EEeccCCceEEccCCCC
Q psy2923 62 NVSMNDNGT--VTATPIHPLTWVPELSN 87 (141)
Q Consensus 62 nv~~~~n~t--vsy~~~~~~~F~p~~S~ 87 (141)
-+.|+..++ ++|+.+|.|.|+.....
T Consensus 37 clqfntgdsihitfqtrryfefdaandg 64 (329)
T 3n7x_A 37 CLQFNTGDSIHITFQTRRYFEFDAANDG 64 (329)
T ss_dssp CCCCCCSCEEEEEEEEEEEEEEECSCSS
T ss_pred eeeccCCCeEEEEEEeeeeEeeecccCC
Confidence 456776454 89999999999976544
No 10
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=5.80 E-value=5.1e+02 Score=15.04 Aligned_cols=29 Identities=3% Similarity=0.049 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCCc
Q psy2923 101 LLSFANVMAKASLLTRMGVNLLIKQTKRK 129 (141)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (141)
..+++..+++-+.|++.+-.+.++.+...
T Consensus 17 ~qaLihLIqnD~~Fl~~IHeAYl~sl~~~ 45 (51)
T 2wx3_A 17 QDTLIHLIKNDSSFLSTLHEVYLQVLTKN 45 (51)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888888888776543
Done!