RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2923
         (141 letters)



>gnl|CDD|216316 pfam01130, CD36, CD36 family.  The CD36 family is thought to be a
           novel class of scavenger receptors. There is also
           evidence suggesting a possible role in signal
           transduction. CD36 is involved in cell adhesion.
          Length = 460

 Score =  143 bits (364), Expect = 6e-42
 Identities = 58/131 (44%), Positives = 76/131 (58%), Gaps = 2/131 (1%)

Query: 2   KVKMSEGSESLDLWATPPVELFLKVYLFNVTNREAFLAGKEKLRVQEVGPYVYREGMAHV 61
           ++ +  GS++ + W  PPV L+ KVYLFNVTN E  L G  K  V+EVGPYVYRE    V
Sbjct: 31  QLVLRPGSDTFESWENPPVPLYFKVYLFNVTNPEEVLNGGAKPIVEEVGPYVYREYREKV 90

Query: 62  NVSMNDNG-TVTATPIHPLTWVPELSNG-KEDDILILPNIALLSFANVMAKASLLTRMGV 119
           NV+ NDNG TV+        + PELS G  EDD++ +PNI +L  A      S L R+ +
Sbjct: 91  NVTFNDNGTTVSYKQRRTYVFDPELSVGGPEDDVITVPNIPMLGAAATAKSMSPLLRLLI 150

Query: 120 NLLIKQTKRKM 130
           N  +K    K 
Sbjct: 151 NAALKSLGEKP 161


>gnl|CDD|147907 pfam06002, CST-I, Alpha-2,3-sialyltransferase (CST-I).  This family
           consists of several alpha-2,3-sialyltransferase (CST-I)
           proteins largely found in Campylobacter jejuni.
          Length = 291

 Score = 29.4 bits (66), Expect = 0.62
 Identities = 16/63 (25%), Positives = 23/63 (36%)

Query: 78  PLTWVPELSNGKEDDILILPNIALLSFANVMAKASLLTRMGVNLLIKQTKRKMENYSRTL 137
              ++    N   +DILI  + A   F  +  K S +       LIK   R   +    L
Sbjct: 229 NSNFILLEKNNYTNDILIPSSEAYEKFKLIEFKKSKIKENLYYKLIKDLLRLPSDIKHYL 288

Query: 138 GEK 140
            EK
Sbjct: 289 KEK 291


>gnl|CDD|147644 pfam05587, Anth_Ig, Anthrax receptor extracellular domain.  This
           region is found in the putatively extracellular
           N-terminal half of the anthrax receptor. It is probably
           part of the Ig superfamily and most closely related to
           pfam01833 (personal obs: C Yeats).
          Length = 105

 Score = 26.6 bits (59), Expect = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)

Query: 50  GPYVYREGM-AHVNVSMND-------NGTVTAT 74
            P +   G  AH+ VS+N+       + T+TAT
Sbjct: 68  APVLEEVGETAHLQVSLNNGLSFISSSVTITAT 100


>gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2;
           Provisional.
          Length = 1049

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 10/42 (23%)

Query: 50  GPYVYREGMAH----VNVSMNDNGTVTATPIHP-LT---WVP 83
            PYV++  + H    + V + +  +VT TP HP LT   WV 
Sbjct: 81  APYVWK--VRHKGKMIKVKLKNWHSVTVTPEHPFLTNRGWVK 120


>gnl|CDD|234236 TIGR03506, FlgEFG_subfam, flagellar hook-basal body protein.  This
           model encompasses three closely related flagellar
           proteins usually denoted FlgE, FlgF and FlgG. The names
           have often been mis-assigned, however. Three equivalog
           models, TIGR02489, TIGR02490 and TIGR02488,
           respectively, separate the individual forms into three
           genome-context consistent groups. The major differences
           between these genes are architectural, with variable
           central sections between relatively conserved N- and
           C-terminal domains. More distantly related are two other
           flagellar apparatus familis, FlgC (TIGR01395) which
           consists of little else but the N-and C-terminal domains
           and FlgK (TIGR02492) with a substantial but different
           central domain.
          Length = 231

 Score = 26.8 bits (60), Expect = 4.1
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 17/61 (27%)

Query: 62  NVSMNDNGTVTATPIHPLTWVPELSNGKEDDILILPNIALLSFANVMAKASLLTRMGVNL 121
           +VS+  +GTV+AT           SNG     + L  IAL +F N       L + G NL
Sbjct: 138 SVSIGSDGTVSATY----------SNG---QTVTLGQIALANFPNPDG----LRKEGGNL 180

Query: 122 L 122
            
Sbjct: 181 Y 181


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,991,033
Number of extensions: 616837
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 11
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)