BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2924
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/238 (63%), Positives = 180/238 (75%), Gaps = 15/238 (6%)
Query: 1 MARTQKNKATAGHLGLLKARIAKLRRELITPKXXXXXXXXX--FDVAKTGDARIGFVGFP 58
MARTQKNKAT+ HLG LKA++AKLRREL+T FDVA+TG A +GFVGFP
Sbjct: 22 MARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFP 81
Query: 59 SVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118
SVGKSTLLS L G SE A YEFTTL TVPG I+YKGAKIQ+LDLPGII+GAKDG+GRG+
Sbjct: 82 SVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGK 141
Query: 119 QVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPN------------IDN 166
QVIAVARTC+L+FI+LDV KPL HK++IE ELEG G+RLNK PP+ I N
Sbjct: 142 QVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITN 201
Query: 167 QVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEG-NRIYVPCIYLLNKI 223
VP + L D ++ ++SEYRI++A+I R DAT DDLIDV+E +R Y+P IY+LNKI
Sbjct: 202 TVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKI 259
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIE 108
A +G VGFPSVGKSTLLS ++ ++A Y FTTL G ++ G DLPG+IE
Sbjct: 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIE 218
Query: 109 GAKDGKGRGRQVI-AVARTCSLIFIV----LDVLKPLGHKKLIEHELEGFGLRLNKEPPN 163
GA G G G Q + + RT ++ ++ L+ P I EL + LRL + P
Sbjct: 219 GAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 278
Query: 164 I---DNQVPQSELDLDTVKTILSE 184
I P++ +L+ K L++
Sbjct: 279 IVANKXDXPEAAENLEAFKEKLTD 302
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIE 108
A +G VG+P+ GKS+LL+ + + ++A Y FTTL+ G ++ + + L D+PGIIE
Sbjct: 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217
Query: 109 GAKDGKGRGRQVIA-VARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEP 161
GA +GKG G + + +ART L++++ +PL + + E+ + L + P
Sbjct: 218 GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP 271
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 48/190 (25%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-------------KGAK- 97
+G VG P+VGKSTL + L + A Y F T+ G + KG +
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 98 -------IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL------DVLKPLGHKK 144
++ +D+ G+++GA G+G G Q +A R + I VL DV+ +G
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVD 123
Query: 145 LIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLI 204
+E D +V ++EL L + T+ E R+ R D L+
Sbjct: 124 PLE-----------------DAEVVETELLLADLATL--ERRLERLRKEARADRERLPLL 164
Query: 205 DVVEGNRIYV 214
+ EG +YV
Sbjct: 165 EAAEG--LYV 172
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 48/190 (25%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-------------KGAK- 97
+G VG P+VGKSTL + L + A Y F T+ G + KG +
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 98 -------IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL------DVLKPLGHKK 144
++ +D+ G+++GA G+G G Q +A R + I VL DV+ +G
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVD 123
Query: 145 LIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLI 204
+E D +V ++EL L + T+ E R+ R D L+
Sbjct: 124 PLE-----------------DAEVVETELLLADLATL--ERRLERLRKEARADRERLPLL 164
Query: 205 DVVEGNRIYV 214
+ EG +YV
Sbjct: 165 EAAEG--LYV 172
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 56 GFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115
G P+VGKS+ ++ ++ +V +Y FTT G +K K Q++D PG+++ A + +
Sbjct: 36 GAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRN 95
Query: 116 --RGRQVIAVARTCSLIFIVLDVLKPLG 141
+ A+A +I ++D+ + G
Sbjct: 96 TIEMTTITALAHINGVILFIIDISEQCG 123
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTL------TTVPG------CIKYKGAK- 97
+IG VG P+VGKST + L + + F T+ VP C +K A
Sbjct: 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83
Query: 98 ----IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIF 131
+ ++D+ G+++GA +G+G G ++ C IF
Sbjct: 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIF 121
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 24/108 (22%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT----------LTTVP----GC------I 91
IG VG P+VGKST S V E+A Y FTT +T P GC
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 92 KYKGA----KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLD 135
+Y+ ++ +D+ G++ GA +G+G G + + R S + V+D
Sbjct: 63 EYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVD 110
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
++ G P+VGK++L + L G VA + T+ G YKG I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
++ G P+VGK++L + L G VA + T+ G YKG I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
++ G P+VGK++L + L G VA + T+ G YKG I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK------------- 97
+ G VG P+VGKSTL + L E A Y F T+ G + +
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERI 63
Query: 98 ----IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130
++ +D+ G++ GA G+G G + +A R I
Sbjct: 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAI 100
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 56 GFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG--AKDG 113
G P+VGKSTLL L E+A+Y FTT G + + Q++D PG+++ ++
Sbjct: 174 GHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERN 233
Query: 114 KGRGRQVIAVARTCSLIFIVLD 135
+ + ++A+ +LI + D
Sbjct: 234 EIEKQAILALRYLGNLIIYIFD 255
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+VGKST+ + L G + + T+ G +Y G K +++DLPG+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+VGKST+ + L G + + T+ G +Y G K +++DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+VGKST+ + L G + + T+ G +Y G K +++DLPG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+VGKST+ + L G + + T+ G +Y G K +++DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
+ VG P+VGK+T+ + L G+ V + T+ G ++Y+ + ++DLPGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 18 KARIAKLRRELITPKXXXXXXXXXFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVA 77
K RI KL +EL + K + IG VG+ + GK++L ++L G+ +V
Sbjct: 150 KRRINKLMKELESIKIFKEKSIE--SNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVD 207
Query: 78 AYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
FTT++ I KI L+D G I G
Sbjct: 208 TKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 18 KARIAKLRRELITPKXXXXXXXXXFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVA 77
K RI KL +EL + K + IG VG+ + GK++L ++L G+ +V
Sbjct: 150 KRRINKLMKELESIKIFKEKSIE--SNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVD 207
Query: 78 AYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
FTT++ I KI L+D I G
Sbjct: 208 TKLFTTMSPKRYAIPINNRKIMLVDTVSFIRG 239
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
+G +G P+ GK+TL + L G V + T+ G ++ L+DLPG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
IG +G P+ GK+TL + L G V + T+ G ++ L+DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
IG +G P+ GK+TL + L G V + T+ G ++ L+DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
IG +G P+ GK+TL + L G V + T+ G ++ L+DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 18 KARIAKLRRELITPKXXXXXXXXXFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVA 77
K RI KL +EL + K + IG VG+ + GK++L ++L G+ +V
Sbjct: 150 KRRINKLMKELESIKIFKEKSIE--SNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVD 207
Query: 78 AYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
FTT++ I KI L+D I G
Sbjct: 208 TKLFTTMSPKRYAIPINNRKIMLVDTVPFIRG 239
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 51 RIGFVGFPSVGKSTLLSTLA-GVYSEVAAYEFTTL------TTVPG------CIKYK--- 94
+ G VG P+VGKST + V A Y + T+ VP C YK
Sbjct: 22 KTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 95 --GAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL 134
A + + D+ G+ +GA G G G ++ R I+ V+
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 52 IGFVGFPSVGKSTLLSTLAGV-YSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEG 109
+ VG P+VGKSTLL+ L G S ++ TT V G A+I LD PGI E
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE- 70
Query: 110 AKDGKGRGRQVIAVART----CSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNK 159
K G ++ +A+ +I ++D + G + E + F LNK
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATE--GWRPRDEEIYQNFIKPLNK 122
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 52 IGFVGFPSVGKSTLLSTLAGV-YSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEG 109
+ VG P+VGKSTLL+ L G S ++ TT V G A+I LD PGI E
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE- 71
Query: 110 AKDGKGRGRQVIAVART----CSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNK 159
K G ++ +A+ +I ++D + G + E + F LNK
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATE--GWRPRDEEIYQNFIKPLNK 123
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGV-YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
++ VG P+VGKS+LL+ + + V TT V + G +Q+LD GI E
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285
Query: 110 A----KDGKGRGRQVIAVARTCSLIFIVLD 135
+ K G R RQ A T L+ + +D
Sbjct: 286 SDQVEKIGVERSRQ---AANTADLVLLTID 312
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGV-YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104
KT + VG P+VGKSTLL+ L GV + ++ TT + G + +I +D P
Sbjct: 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 63
Query: 105 GI 106
G+
Sbjct: 64 GL 65
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107
R +G P+VGKSTL++ LA + + +TT +K G +++LLD PGI+
Sbjct: 122 RALIIGIPNVGKSTLINRLAK-KNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAA-YEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108
A + VG P+VGKSTL + L + E T V +++ G +L+D G+ +
Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61
Query: 109 GAKD--GKGRGRQVIAVARTCSLIFIVLD 135
+D + + R L+ V+D
Sbjct: 62 NPQDIISQKXKEVTLNXIREADLVLFVVD 90
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 56 GFPSVGKSTLLSTLAGVYSEVAAY-EFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK--- 111
G P+ GKSTLL+TL G + ++ TT + C + +L D G+ E +
Sbjct: 240 GKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIE 299
Query: 112 -DGKGRGRQVIAVARTCSLIFIVLDV 136
+G R R +A A LI +LD+
Sbjct: 300 HEGIRRSRMKMAEA---DLILYLLDL 322
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 30.4 bits (67), Expect = 0.94, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 149 ELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH 188
E+EG +RL EP I ++P+S L L+ V+ + +E R H
Sbjct: 587 EVEGSVVRL-PEPTRIRLEIPESALSLEDVRKMGAELRPH 625
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 30.4 bits (67), Expect = 0.94, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 149 ELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH 188
E+EG +RL EP I ++P+S L L+ V+ + +E R H
Sbjct: 587 EVEGSVVRL-PEPTRIRLEIPESALSLEDVRKMGAELRPH 625
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 84 LTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLG 141
+ PGC+ ++P II+ A D K + QV+AVA+ I V +K G
Sbjct: 37 FPSCPGCVS---------EMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYG 85
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 46 KTGDA-RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96
+TG A R+G G P VGKST + L + + A ++ L P + G+
Sbjct: 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGS 101
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 46 KTGDA-RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96
+TG A R+G G P VGKST + L + + A ++ L P + G+
Sbjct: 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGS 101
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGV-YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
R+ VG P+VGKSTLL+ L + V TT + I +G +++D G+
Sbjct: 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 304
Query: 110 AKD-----GKGRGRQVIAVARTCSLIFIVLDVLKPLGH--KKLIEH 148
D G R Q I A ++ VLD PL +K++E
Sbjct: 305 TNDLVERLGIERTLQEIEKA---DIVLFVLDASSPLDEEDRKILER 347
>pdb|2RAQ|A Chain A, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|B Chain B, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|C Chain C, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|D Chain D, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|E Chain E, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|F Chain F, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|G Chain G, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
Length = 97
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 129 LIFIVLDVLKPLGHKKLIEHE---------LEGFGLRL---NKEPPNIDNQVPQSELDLD 176
LI IVLD+LKP H+ +I +EG + L +KE NI + ++LD D
Sbjct: 6 LIRIVLDILKP--HEPIIPEYAKYLSELRGVEGVNITLXEIDKETENIKVTIQGNDLDFD 63
Query: 177 TVKTILSEY--RIHNAD 191
+ + Y IH+ D
Sbjct: 64 EITRAIESYGGSIHSVD 80
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 16/65 (24%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIK-------YKGAKIQLLD 102
AR+ VG P+ GKST+++ L G + +++ PG K G KI LD
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRA-------SSVGAQPGITKGIQWFSLENGVKI--LD 150
Query: 103 LPGII 107
PGI+
Sbjct: 151 TPGIL 155
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCS----LIFIVLDVLK 138
I ++D PGI+ GAK RG AV R + LI ++ D K
Sbjct: 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
++ G P+ GKS+LL+ LAG + +++A TT + I G + ++D G+
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAG---TTRDVLREHIHIDGMPLHIIDTAGL 65
Query: 107 IEGAKD 112
E + +
Sbjct: 66 REASDE 71
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
Complexed With Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
Complexed With Gdp-Mg2+
Length = 410
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV------------PGCIK 92
++ + IG VG GK+TL L GV+++ + E T+ P C +
Sbjct: 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGR 65
Query: 93 YKGAKI 98
Y + +
Sbjct: 66 YSTSPV 71
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
++ G P+ GKS+LL+ LAG + +++A TT + I G + ++D G+
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAG---TTRDVLREHIHIDGXPLHIIDTAGL 62
Query: 107 IEGAKD 112
E + +
Sbjct: 63 REASDE 68
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGI 106
I VG P+VGKSTLL+ L G + + + T I +GA + +D PG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
++ G P+ GKS+LL+ LAG + +++A TT + I G + ++D G+
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAG---TTRDVLREHIHIDGMPLHIIDTAGL 62
Query: 107 IEGAKD 112
E + +
Sbjct: 63 REASDE 68
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV 87
++ + IG VG GK+TL L GV+++ + E T+
Sbjct: 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITI 48
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGI 106
I VG P+VGKSTLL+ L G + + + T I +GA + +D PG+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEF 81
+ + IG VG GK+TL L GV+++ + E
Sbjct: 8 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL 43
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi
Length = 410
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV 87
++ + IG VG GK+TL L GV+++ + E T+
Sbjct: 6 SRQAEVNIGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITI 48
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 54 FVGFPSVGKSTLLSTLAGVYSEVAAYEFTTL------TTVPGCIKYKGAKIQLLDLPGII 107
F G VGKS+LL+ L G+ +E+ + + + TT + + ++D PG+
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVR 279
Query: 108 E 108
E
Sbjct: 280 E 280
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFT---TLTTVPGCIKYKGAKIQLL 101
+ G + VG P+VGKST+ + +AG ++ E T T + ++ L+
Sbjct: 19 SHMGKPVVAIVGRPNVGKSTIFNRIAG--ERISIVEDTPGVTRDRIYSSAEWLNYDFNLI 76
Query: 102 DLPGIIEGAKDGKGRGRQV--IAVARTCSLIFIV 133
D GI G + + RQ IA+ +IF+V
Sbjct: 77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,154,790
Number of Sequences: 62578
Number of extensions: 244071
Number of successful extensions: 698
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 63
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)