Query psy2924
Match_columns 225
No_of_seqs 158 out of 1268
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:04:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 1.7E-40 3.6E-45 278.1 19.2 225 1-225 15-251 (365)
2 KOG1486|consensus 100.0 1.8E-34 3.9E-39 234.3 16.5 224 1-224 14-249 (364)
3 KOG1487|consensus 100.0 4E-28 8.6E-33 198.1 12.7 222 1-224 13-242 (358)
4 COG1126 GlnQ ABC-type polar am 99.9 9.6E-28 2.1E-32 191.9 2.3 178 23-218 4-214 (240)
5 cd01896 DRG The developmentall 99.9 3.8E-24 8.2E-29 177.4 18.6 175 51-225 2-188 (233)
6 COG1125 OpuBA ABC-type proline 99.9 7.9E-26 1.7E-30 184.8 5.4 178 23-218 3-214 (309)
7 COG1137 YhbG ABC-type (unclass 99.9 7.8E-26 1.7E-30 178.9 2.5 178 25-219 8-218 (243)
8 COG1136 SalX ABC-type antimicr 99.9 4.2E-26 9.1E-31 186.0 0.3 167 35-217 19-219 (226)
9 COG1116 TauB ABC-type nitrate/ 99.9 2.6E-24 5.6E-29 176.1 10.4 162 28-213 10-204 (248)
10 COG1120 FepC ABC-type cobalami 99.9 6.8E-25 1.5E-29 182.2 6.5 152 30-198 11-199 (258)
11 COG1135 AbcC ABC-type metal io 99.9 2.9E-25 6.3E-30 186.0 3.3 170 35-220 20-222 (339)
12 COG3842 PotA ABC-type spermidi 99.9 5.5E-25 1.2E-29 190.1 3.1 171 25-216 9-213 (352)
13 COG2884 FtsE Predicted ATPase 99.9 1.9E-24 4.1E-29 169.7 5.6 162 23-198 3-197 (223)
14 COG1127 Ttg2A ABC-type transpo 99.9 8.8E-25 1.9E-29 177.4 2.5 184 21-220 8-226 (263)
15 COG0411 LivG ABC-type branched 99.9 1.7E-25 3.6E-30 182.1 -1.8 176 23-214 6-224 (250)
16 COG3840 ThiQ ABC-type thiamine 99.9 1.7E-23 3.7E-28 163.5 9.2 161 41-220 19-210 (231)
17 COG4152 ABC-type uncharacteriz 99.9 2.5E-24 5.3E-29 175.1 3.9 172 25-218 6-208 (300)
18 COG3839 MalK ABC-type sugar tr 99.9 2.6E-24 5.6E-29 185.0 3.4 167 26-213 8-207 (338)
19 COG3638 ABC-type phosphate/pho 99.9 4.2E-25 9E-30 178.8 -1.5 176 24-213 6-228 (258)
20 COG1131 CcmA ABC-type multidru 99.9 3.3E-24 7.2E-29 183.3 3.7 179 24-220 7-217 (293)
21 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2.4E-22 5.3E-27 166.2 11.3 164 30-213 13-212 (254)
22 COG1124 DppF ABC-type dipeptid 99.9 7.2E-23 1.6E-27 166.7 4.8 173 28-218 10-220 (252)
23 PRK13537 nodulation ABC transp 99.9 7E-23 1.5E-27 176.2 4.7 174 28-219 14-217 (306)
24 TIGR01188 drrA daunorubicin re 99.9 7.2E-23 1.6E-27 175.9 4.7 171 31-219 3-203 (302)
25 PRK13536 nodulation factor exp 99.9 9E-23 1.9E-27 177.8 4.6 181 21-219 41-251 (340)
26 TIGR01186 proV glycine betaine 99.9 4.1E-23 8.9E-28 181.0 2.5 177 30-219 2-209 (363)
27 cd03259 ABC_Carb_Solutes_like 99.9 3.1E-22 6.6E-27 163.5 7.3 171 30-219 9-210 (213)
28 COG1129 MglA ABC-type sugar tr 99.9 9.3E-23 2E-27 182.4 4.4 184 22-222 9-227 (500)
29 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.1E-22 4.5E-27 170.4 5.8 182 24-218 27-239 (269)
30 COG0410 LivF ABC-type branched 99.9 6.8E-23 1.5E-27 165.7 2.7 176 30-221 12-218 (237)
31 COG4619 ABC-type uncharacteriz 99.9 1.7E-21 3.6E-26 150.6 9.9 153 23-198 5-194 (223)
32 cd03226 ABC_cobalt_CbiO_domain 99.9 2.4E-22 5.1E-27 163.3 5.1 166 30-217 8-203 (205)
33 COG1118 CysA ABC-type sulfate/ 99.9 4.9E-22 1.1E-26 166.4 7.1 171 29-217 10-215 (345)
34 cd03261 ABC_Org_Solvent_Resist 99.9 2.1E-22 4.5E-27 166.9 4.8 175 31-219 10-216 (235)
35 COG4175 ProV ABC-type proline/ 99.9 4.9E-22 1.1E-26 167.0 6.7 184 26-224 32-258 (386)
36 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.7E-22 3.7E-27 165.5 3.9 166 34-213 17-213 (218)
37 COG4555 NatA ABC-type Na+ tran 99.9 6.7E-23 1.5E-27 162.5 1.4 171 26-221 6-214 (245)
38 COG1122 CbiO ABC-type cobalt t 99.9 1.4E-21 3E-26 161.6 8.7 166 31-219 13-218 (235)
39 TIGR02314 ABC_MetN D-methionin 99.9 1.4E-22 3.1E-27 176.5 2.7 170 35-219 19-220 (343)
40 PRK11650 ugpC glycerol-3-phosp 99.9 1.9E-22 4.1E-27 176.8 3.4 168 32-218 15-213 (356)
41 cd03301 ABC_MalK_N The N-termi 99.9 9.1E-22 2E-26 160.7 7.1 169 31-219 10-210 (213)
42 TIGR02673 FtsE cell division A 99.9 2.5E-22 5.5E-27 164.1 3.8 167 33-213 14-210 (214)
43 TIGR00960 3a0501s02 Type II (G 99.9 1.6E-22 3.4E-27 165.6 2.1 165 35-213 17-211 (216)
44 PRK11432 fbpC ferric transport 99.8 2.5E-22 5.3E-27 175.7 3.2 172 29-219 14-216 (351)
45 TIGR03522 GldA_ABC_ATP gliding 99.8 4.8E-22 1E-26 170.7 4.9 172 30-219 11-211 (301)
46 cd03262 ABC_HisP_GlnQ_permease 99.8 3.8E-22 8.3E-27 162.8 4.1 167 31-213 10-208 (213)
47 PRK10070 glycine betaine trans 99.8 2.5E-22 5.3E-27 178.0 3.1 183 24-219 31-244 (400)
48 TIGR02315 ABC_phnC phosphonate 99.8 2.7E-22 5.8E-27 167.0 3.0 173 33-219 14-225 (243)
49 TIGR01288 nodI ATP-binding ABC 99.8 5.7E-22 1.2E-26 170.4 4.9 173 29-219 12-214 (303)
50 cd03225 ABC_cobalt_CbiO_domain 99.8 6.3E-22 1.4E-26 161.4 4.9 163 34-213 14-207 (211)
51 cd03218 ABC_YhbG The ABC trans 99.8 7.5E-22 1.6E-26 163.2 5.4 172 31-218 10-211 (232)
52 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.8E-21 3.9E-26 159.8 7.5 164 34-219 17-213 (220)
53 cd03235 ABC_Metallic_Cations A 99.8 3.7E-22 8E-27 163.1 3.4 165 30-216 8-208 (213)
54 TIGR03265 PhnT2 putative 2-ami 99.8 4.2E-22 9.1E-27 174.4 3.7 171 30-219 13-214 (353)
55 COG3845 ABC-type uncharacteriz 99.8 6.4E-22 1.4E-26 174.5 4.9 175 25-216 8-216 (501)
56 cd03265 ABC_DrrA DrrA is the A 99.8 1E-21 2.2E-26 161.2 5.7 172 30-219 9-211 (220)
57 PRK10851 sulfate/thiosulfate t 99.8 4.8E-22 1E-26 174.0 3.8 171 30-219 11-216 (353)
58 PRK11264 putative amino-acid A 99.8 5E-22 1.1E-26 166.1 3.6 177 30-219 12-223 (250)
59 PRK10908 cell division protein 99.8 5.4E-22 1.2E-26 163.1 3.8 173 33-219 14-216 (222)
60 PRK11629 lolD lipoprotein tran 99.8 5.7E-22 1.2E-26 164.2 3.8 171 35-219 23-224 (233)
61 cd03263 ABC_subfamily_A The AB 99.8 9.1E-22 2E-26 161.4 4.9 168 34-219 15-211 (220)
62 cd03296 ABC_CysA_sulfate_impor 99.8 1.3E-21 2.7E-26 162.7 5.7 170 30-218 11-215 (239)
63 cd03269 ABC_putative_ATPase Th 99.8 7E-22 1.5E-26 161.1 3.9 168 31-219 10-207 (210)
64 cd03266 ABC_NatA_sodium_export 99.8 1.1E-21 2.5E-26 160.6 5.1 167 35-219 19-215 (218)
65 PRK11000 maltose/maltodextrin 99.8 6E-22 1.3E-26 174.5 3.7 170 30-218 12-212 (369)
66 PRK09536 btuD corrinoid ABC tr 99.8 5.9E-22 1.3E-26 175.7 3.6 174 29-219 11-218 (402)
67 cd03256 ABC_PhnC_transporter A 99.8 1.1E-21 2.4E-26 163.0 5.0 172 34-219 14-224 (241)
68 cd03219 ABC_Mj1267_LivG_branch 99.8 6.4E-22 1.4E-26 164.0 3.5 173 31-219 10-222 (236)
69 cd03258 ABC_MetN_methionine_tr 99.8 5E-22 1.1E-26 164.4 2.8 171 35-219 19-220 (233)
70 COG1117 PstB ABC-type phosphat 99.8 2.2E-21 4.8E-26 155.1 6.1 173 28-213 14-221 (253)
71 cd03268 ABC_BcrA_bacitracin_re 99.8 6.9E-22 1.5E-26 160.9 3.2 170 31-219 10-205 (208)
72 cd03264 ABC_drug_resistance_li 99.8 1.3E-21 2.9E-26 159.5 4.7 170 31-219 10-208 (211)
73 PRK11153 metN DL-methionine tr 99.8 1.6E-22 3.6E-27 176.5 -0.9 172 34-219 18-220 (343)
74 TIGR03608 L_ocin_972_ABC putat 99.8 1.3E-21 2.8E-26 158.9 4.4 145 31-188 8-180 (206)
75 TIGR03258 PhnT 2-aminoethylpho 99.8 1E-21 2.2E-26 172.4 3.9 170 30-218 14-217 (362)
76 TIGR03415 ABC_choXWV_ATP choli 99.8 5.7E-22 1.2E-26 174.6 2.4 178 29-219 32-244 (382)
77 TIGR02211 LolD_lipo_ex lipopro 99.8 5.5E-22 1.2E-26 162.9 2.1 168 35-217 19-218 (221)
78 PRK09452 potA putrescine/sperm 99.8 8.7E-22 1.9E-26 173.5 3.4 171 30-219 23-224 (375)
79 cd03224 ABC_TM1139_LivF_branch 99.8 1.8E-21 3.9E-26 159.8 5.1 174 30-219 9-211 (222)
80 PRK11247 ssuB aliphatic sulfon 99.8 3.3E-21 7.1E-26 162.0 6.5 168 29-219 20-213 (257)
81 PRK10584 putative ABC transpor 99.8 1E-21 2.2E-26 162.1 3.1 169 36-219 25-225 (228)
82 PRK11124 artP arginine transpo 99.8 2.2E-21 4.8E-26 161.5 5.1 177 30-219 11-220 (242)
83 cd03298 ABC_ThiQ_thiamine_tran 99.8 3.8E-21 8.3E-26 156.8 6.3 162 39-219 16-208 (211)
84 cd03292 ABC_FtsE_transporter F 99.8 9.3E-22 2E-26 160.7 2.6 166 34-213 14-209 (214)
85 TIGR03411 urea_trans_UrtD urea 99.8 2.1E-21 4.5E-26 161.6 4.5 174 30-219 11-221 (242)
86 COG4181 Predicted ABC-type tra 99.8 4.9E-21 1.1E-25 148.5 5.7 168 35-218 24-224 (228)
87 cd03295 ABC_OpuCA_Osmoprotecti 99.8 3.2E-21 6.9E-26 160.6 5.0 169 34-219 14-215 (242)
88 cd03260 ABC_PstB_phosphate_tra 99.8 2.3E-21 5.1E-26 159.8 4.1 174 30-219 9-219 (227)
89 PRK11831 putative ABC transpor 99.8 2.6E-21 5.7E-26 163.6 4.4 175 30-218 16-222 (269)
90 PRK11248 tauB taurine transpor 99.8 5.3E-21 1.1E-25 160.6 6.2 162 31-214 11-203 (255)
91 PRK09493 glnQ glutamine ABC tr 99.8 2.7E-21 6E-26 160.7 4.4 174 31-219 11-215 (240)
92 PRK13641 cbiO cobalt transport 99.8 4.7E-21 1E-25 163.5 5.8 171 35-219 21-224 (287)
93 TIGR01166 cbiO cobalt transpor 99.8 3.4E-21 7.4E-26 154.7 4.6 151 33-198 4-187 (190)
94 TIGR02142 modC_ABC molybdenum 99.8 7.9E-21 1.7E-25 166.6 6.9 166 39-218 15-210 (354)
95 PRK10253 iron-enterobactin tra 99.8 3.3E-21 7.1E-26 162.7 4.3 173 30-219 16-223 (265)
96 PRK10895 lipopolysaccharide AB 99.8 7.4E-21 1.6E-25 158.2 6.1 171 31-218 13-215 (241)
97 PRK11607 potG putrescine trans 99.8 2.8E-21 6.1E-26 170.4 3.8 169 30-218 28-228 (377)
98 TIGR00972 3a0107s01c2 phosphat 99.8 5.4E-21 1.2E-25 159.7 5.2 173 31-219 11-222 (247)
99 PRK11144 modC molybdate transp 99.8 7E-21 1.5E-25 166.8 6.0 166 39-218 16-207 (352)
100 PRK13638 cbiO cobalt transport 99.8 3E-21 6.5E-26 163.4 3.6 174 30-218 10-214 (271)
101 TIGR01184 ntrCD nitrate transp 99.8 6.2E-21 1.3E-25 157.8 5.2 159 38-218 2-193 (230)
102 PRK10762 D-ribose transporter 99.8 1.9E-21 4.2E-26 177.7 2.1 177 27-219 10-220 (501)
103 PRK13646 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 160.9 6.8 171 35-219 21-225 (286)
104 PRK11300 livG leucine/isoleuci 99.8 3.4E-21 7.3E-26 161.5 3.3 174 30-219 14-233 (255)
105 cd03214 ABC_Iron-Siderophores_ 99.8 2.5E-20 5.4E-25 148.6 8.1 166 31-219 9-177 (180)
106 TIGR03005 ectoine_ehuA ectoine 99.8 5.5E-21 1.2E-25 160.1 4.4 176 31-219 10-226 (252)
107 PRK13649 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 160.3 6.5 171 35-219 21-224 (280)
108 cd03216 ABC_Carb_Monos_I This 99.8 2.1E-20 4.5E-25 146.9 7.3 150 31-219 10-161 (163)
109 PRK13643 cbiO cobalt transport 99.8 9.5E-21 2.1E-25 161.7 5.9 171 35-219 20-223 (288)
110 PRK10575 iron-hydroxamate tran 99.8 4.5E-21 9.8E-26 161.8 3.7 173 29-218 19-226 (265)
111 PRK11231 fecE iron-dicitrate t 99.8 5E-21 1.1E-25 160.6 3.9 173 30-219 11-217 (255)
112 cd03267 ABC_NatA_like Similar 99.8 1.7E-20 3.6E-25 155.8 6.9 173 29-219 29-233 (236)
113 PRK10619 histidine/lysine/argi 99.8 6.8E-21 1.5E-25 160.0 4.5 177 30-219 14-231 (257)
114 PRK13634 cbiO cobalt transport 99.8 6.1E-21 1.3E-25 163.1 4.2 172 34-219 20-225 (290)
115 PRK14247 phosphate ABC transpo 99.8 8.2E-21 1.8E-25 158.8 4.8 177 30-218 12-223 (250)
116 COG4604 CeuD ABC-type enteroch 99.8 1.7E-21 3.7E-26 154.1 0.6 168 22-213 2-216 (252)
117 cd03257 ABC_NikE_OppD_transpor 99.8 1.6E-20 3.5E-25 154.7 6.3 171 35-219 19-225 (228)
118 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 6.5E-21 1.4E-25 158.1 3.9 169 31-218 11-210 (236)
119 PRK11614 livF leucine/isoleuci 99.8 9E-21 2E-25 157.3 4.8 173 30-219 14-216 (237)
120 PRK15439 autoinducer 2 ABC tra 99.8 7.3E-21 1.6E-25 174.2 4.5 174 30-219 20-219 (510)
121 PRK13647 cbiO cobalt transport 99.8 1.1E-20 2.4E-25 160.2 5.2 169 34-219 18-217 (274)
122 PRK14250 phosphate ABC transpo 99.8 2.1E-20 4.6E-25 155.6 6.7 169 31-219 13-211 (241)
123 PRK15112 antimicrobial peptide 99.8 2.2E-20 4.8E-25 157.8 6.9 168 35-219 27-229 (267)
124 TIGR03873 F420-0_ABC_ATP propo 99.8 9.4E-21 2E-25 159.0 4.4 171 31-218 11-215 (256)
125 TIGR03410 urea_trans_UrtE urea 99.8 6.5E-21 1.4E-25 157.4 3.4 172 31-219 10-211 (230)
126 PRK10771 thiQ thiamine transpo 99.8 1.7E-20 3.6E-25 155.3 5.7 163 38-219 16-209 (232)
127 PRK09700 D-allose transporter 99.8 9.9E-21 2.1E-25 173.4 4.7 175 29-219 13-224 (510)
128 TIGR01277 thiQ thiamine ABC tr 99.8 2E-20 4.3E-25 152.9 6.0 165 36-219 13-208 (213)
129 PRK13637 cbiO cobalt transport 99.8 1.4E-20 3E-25 160.7 5.1 170 35-219 21-224 (287)
130 PRK09984 phosphonate/organopho 99.8 1.5E-20 3.3E-25 158.3 5.1 179 30-218 13-231 (262)
131 PRK14267 phosphate ABC transpo 99.8 1.3E-20 2.9E-25 157.8 4.6 180 30-219 13-227 (253)
132 cd03231 ABC_CcmA_heme_exporter 99.8 2E-20 4.3E-25 151.7 5.5 139 31-188 10-171 (201)
133 PRK13650 cbiO cobalt transport 99.8 1.3E-20 2.8E-25 160.2 4.6 166 35-219 21-219 (279)
134 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 3.7E-19 8.1E-24 146.6 13.1 165 30-219 31-221 (224)
135 cd03300 ABC_PotA_N PotA is an 99.8 2E-20 4.2E-25 154.9 5.3 170 31-219 10-210 (232)
136 cd03229 ABC_Class3 This class 99.8 1.9E-20 4.2E-25 149.0 5.1 161 31-212 10-173 (178)
137 PRK15079 oligopeptide ABC tran 99.8 6.5E-21 1.4E-25 165.6 2.5 171 35-219 35-241 (331)
138 cd03230 ABC_DR_subfamily_A Thi 99.8 1.6E-20 3.4E-25 148.8 4.4 153 33-213 12-168 (173)
139 TIGR03740 galliderm_ABC gallid 99.8 1.2E-20 2.5E-25 155.3 3.8 166 31-219 10-203 (223)
140 PRK11022 dppD dipeptide transp 99.8 3.8E-21 8.2E-26 166.8 0.9 176 35-219 21-233 (326)
141 TIGR02769 nickel_nikE nickel i 99.8 2E-20 4.3E-25 157.9 5.2 171 34-218 24-229 (265)
142 cd03233 ABC_PDR_domain1 The pl 99.8 1.1E-20 2.3E-25 153.5 3.4 166 34-219 20-199 (202)
143 PRK13549 xylose transporter AT 99.8 6.3E-21 1.4E-25 174.5 2.0 178 28-219 12-222 (506)
144 PRK13635 cbiO cobalt transport 99.8 2E-20 4.4E-25 159.0 5.0 168 34-219 20-219 (279)
145 TIGR01978 sufC FeS assembly AT 99.8 1.8E-20 4E-25 155.8 4.6 173 30-218 9-223 (243)
146 PRK13639 cbiO cobalt transport 99.8 2.6E-20 5.7E-25 158.0 5.6 171 34-219 15-216 (275)
147 PRK13540 cytochrome c biogenes 99.8 9.8E-21 2.1E-25 153.4 2.8 151 30-198 10-187 (200)
148 PRK13651 cobalt transporter AT 99.8 3.1E-20 6.7E-25 159.7 5.9 171 35-219 21-244 (305)
149 PRK10982 galactose/methyl gala 99.8 1.8E-20 4E-25 170.9 4.7 174 30-219 7-213 (491)
150 PRK13543 cytochrome c biogenes 99.8 2E-20 4.2E-25 153.2 4.3 162 29-211 19-208 (214)
151 TIGR02324 CP_lyasePhnL phospho 99.8 1.3E-20 2.7E-25 155.1 3.0 166 35-214 22-223 (224)
152 PRK13644 cbiO cobalt transport 99.8 2.6E-20 5.6E-25 158.0 4.8 169 34-219 15-214 (274)
153 cd03297 ABC_ModC_molybdenum_tr 99.8 3.6E-20 7.9E-25 151.4 5.5 175 29-219 8-211 (214)
154 TIGR01189 ccmA heme ABC export 99.8 9.9E-21 2.2E-25 153.0 2.1 148 31-198 10-187 (198)
155 PRK13632 cbiO cobalt transport 99.8 3.3E-20 7.2E-25 157.1 5.3 165 34-218 22-220 (271)
156 PRK13548 hmuV hemin importer A 99.8 3.9E-20 8.5E-25 155.6 5.7 173 30-219 11-220 (258)
157 PRK13652 cbiO cobalt transport 99.8 2.5E-20 5.4E-25 158.3 4.5 169 34-219 17-217 (277)
158 PRK10744 pstB phosphate transp 99.8 8.8E-20 1.9E-24 153.5 7.8 179 30-219 22-234 (260)
159 TIGR00968 3a0106s01 sulfate AB 99.8 4.8E-20 1E-24 153.1 6.1 170 31-219 10-210 (237)
160 COG4559 ABC-type hemin transpo 99.8 1.6E-19 3.4E-24 144.4 8.7 159 30-212 10-220 (259)
161 COG4598 HisP ABC-type histidin 99.8 7.1E-20 1.5E-24 143.2 6.5 162 25-199 10-213 (256)
162 PRK14273 phosphate ABC transpo 99.8 7.8E-20 1.7E-24 153.2 7.2 178 30-218 16-227 (254)
163 PRK11701 phnK phosphonate C-P 99.8 1.9E-20 4E-25 157.4 3.4 176 30-218 15-230 (258)
164 PRK11288 araG L-arabinose tran 99.8 2.5E-20 5.4E-25 170.4 4.5 173 30-218 13-218 (501)
165 PRK09700 D-allose transporter 99.8 6.9E-20 1.5E-24 167.8 7.2 169 35-219 277-488 (510)
166 PRK15093 antimicrobial peptide 99.8 3.4E-21 7.3E-26 167.4 -1.4 177 34-219 20-238 (330)
167 PRK14241 phosphate transporter 99.8 3.8E-20 8.3E-25 155.5 5.0 174 30-213 13-220 (258)
168 PRK14242 phosphate transporter 99.8 5.2E-20 1.1E-24 154.2 5.7 179 30-219 15-227 (253)
169 PRK10247 putative ABC transpor 99.8 5.3E-20 1.1E-24 151.7 5.5 141 30-188 16-183 (225)
170 PRK11308 dppF dipeptide transp 99.8 1.6E-20 3.4E-25 163.0 2.5 169 35-219 29-234 (327)
171 TIGR02323 CP_lyasePhnK phospho 99.8 2.4E-20 5.1E-25 156.3 3.3 175 30-218 12-227 (253)
172 PRK14269 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 155.4 3.5 175 30-219 11-220 (246)
173 PRK13538 cytochrome c biogenes 99.8 2.5E-20 5.4E-25 151.4 3.2 140 31-188 11-175 (204)
174 PRK13636 cbiO cobalt transport 99.8 5E-20 1.1E-24 156.9 5.1 171 34-219 19-221 (283)
175 PRK09473 oppD oligopeptide tra 99.8 2.3E-20 5.1E-25 162.1 3.1 173 35-219 30-241 (330)
176 COG4608 AppF ABC-type oligopep 99.8 5.3E-20 1.1E-24 152.6 4.8 115 35-198 27-170 (268)
177 PRK10938 putative molybdenum t 99.8 5.2E-20 1.1E-24 167.8 5.2 173 28-218 10-213 (490)
178 PRK15056 manganese/iron transp 99.8 2.1E-19 4.6E-24 152.2 8.5 160 34-213 20-215 (272)
179 cd03245 ABCC_bacteriocin_expor 99.8 6.2E-20 1.3E-24 150.5 4.7 159 34-219 17-217 (220)
180 PRK14256 phosphate ABC transpo 99.8 8.3E-20 1.8E-24 152.9 5.3 178 30-219 13-226 (252)
181 PRK13547 hmuV hemin importer A 99.8 2.6E-20 5.6E-25 157.8 2.0 173 30-219 10-234 (272)
182 PRK10636 putative ABC transpor 99.8 5.5E-19 1.2E-23 165.7 11.1 175 29-218 9-224 (638)
183 PRK13633 cobalt transporter AT 99.8 1.5E-19 3.1E-24 153.8 6.6 167 34-218 23-222 (280)
184 cd03228 ABCC_MRP_Like The MRP 99.8 1.1E-19 2.4E-24 143.7 5.5 146 35-210 16-164 (171)
185 PRK13648 cbiO cobalt transport 99.8 1.2E-19 2.6E-24 153.5 5.9 165 35-218 23-220 (269)
186 PRK14268 phosphate ABC transpo 99.8 8.7E-20 1.9E-24 153.4 4.8 179 30-219 21-232 (258)
187 PRK09544 znuC high-affinity zi 99.8 1.3E-19 2.8E-24 151.9 5.8 154 30-214 13-195 (251)
188 PRK13631 cbiO cobalt transport 99.8 1.3E-19 2.9E-24 156.7 6.0 171 35-219 40-255 (320)
189 PRK13640 cbiO cobalt transport 99.8 8E-20 1.7E-24 155.6 4.3 166 35-219 21-222 (282)
190 PRK14237 phosphate transporter 99.8 2.2E-19 4.8E-24 151.7 7.0 179 30-219 29-241 (267)
191 PRK13645 cbiO cobalt transport 99.8 1.7E-19 3.6E-24 154.1 6.2 170 36-219 26-230 (289)
192 PRK13539 cytochrome c biogenes 99.8 4.3E-20 9.4E-25 150.4 2.5 137 30-188 11-173 (207)
193 PRK13549 xylose transporter AT 99.8 2.3E-19 5E-24 164.2 7.5 170 34-219 275-484 (506)
194 PRK14248 phosphate ABC transpo 99.8 2.3E-19 5E-24 151.6 6.9 180 29-219 29-242 (268)
195 PRK14235 phosphate transporter 99.8 5.6E-20 1.2E-24 155.3 3.2 180 30-219 28-241 (267)
196 COG4107 PhnK ABC-type phosphon 99.8 9.3E-20 2E-24 141.9 4.1 165 22-204 7-218 (258)
197 TIGR02982 heterocyst_DevA ABC 99.8 7.4E-20 1.6E-24 150.3 3.7 165 34-215 18-216 (220)
198 PRK11288 araG L-arabinose tran 99.8 2.7E-19 5.8E-24 163.6 7.7 168 34-218 266-474 (501)
199 TIGR02770 nickel_nikD nickel i 99.8 2.1E-19 4.6E-24 148.6 6.3 168 37-219 2-205 (230)
200 COG4586 ABC-type uncharacteriz 99.8 1.1E-18 2.4E-23 144.2 10.4 162 36-221 39-238 (325)
201 PRK14259 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 153.5 4.8 173 30-214 22-227 (269)
202 PRK14271 phosphate ABC transpo 99.8 2.8E-20 6E-25 158.0 1.0 187 21-219 21-241 (276)
203 PRK14272 phosphate ABC transpo 99.8 1.2E-19 2.7E-24 151.8 4.8 180 30-219 13-226 (252)
204 COG1159 Era GTPase [General fu 99.8 4.9E-18 1.1E-22 142.2 14.3 163 50-218 7-178 (298)
205 cd03299 ABC_ModC_like Archeal 99.8 1.7E-19 3.6E-24 149.7 5.5 165 36-219 14-209 (235)
206 cd03234 ABCG_White The White s 99.8 1.8E-19 3.9E-24 148.6 5.7 165 34-219 20-223 (226)
207 COG0444 DppD ABC-type dipeptid 99.8 8.7E-20 1.9E-24 154.4 3.8 174 35-219 19-233 (316)
208 PRK10261 glutathione transport 99.8 5.6E-20 1.2E-24 172.0 2.8 171 35-219 338-543 (623)
209 COG1119 ModF ABC-type molybden 99.8 3.3E-19 7.2E-24 145.5 6.9 183 22-220 32-253 (257)
210 cd03215 ABC_Carb_Monos_II This 99.8 9.5E-20 2E-24 145.5 3.5 156 36-213 15-177 (182)
211 TIGR02633 xylG D-xylose ABC tr 99.8 1.2E-19 2.6E-24 165.8 4.6 176 30-219 10-220 (500)
212 PRK14261 phosphate ABC transpo 99.8 2.9E-19 6.3E-24 149.7 6.5 180 30-219 15-227 (253)
213 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1E-18 2.2E-23 134.6 9.0 127 33-211 12-138 (144)
214 PRK14254 phosphate ABC transpo 99.8 1.4E-19 3E-24 154.3 4.6 178 30-218 48-258 (285)
215 PRK14245 phosphate ABC transpo 99.8 2.1E-19 4.6E-24 150.3 5.6 173 32-218 14-223 (250)
216 PRK14246 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 152.0 4.4 186 19-217 8-229 (257)
217 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.3E-19 2.7E-24 146.9 3.9 166 31-218 10-183 (200)
218 PRK10419 nikE nickel transport 99.8 2E-19 4.3E-24 152.1 5.1 171 34-218 25-230 (268)
219 COG1123 ATPase components of v 99.8 2.9E-19 6.2E-24 161.1 6.4 169 34-219 304-509 (539)
220 PRK14239 phosphate transporter 99.8 2.8E-19 6E-24 149.6 5.9 177 30-219 14-226 (252)
221 cd03246 ABCC_Protease_Secretio 99.8 1.3E-19 2.8E-24 143.6 3.7 126 35-189 16-143 (173)
222 PRK15134 microcin C ABC transp 99.8 1.4E-19 3E-24 166.5 4.4 178 34-219 22-236 (529)
223 TIGR02633 xylG D-xylose ABC tr 99.8 5.9E-19 1.3E-23 161.3 8.4 171 34-219 273-482 (500)
224 PRK14240 phosphate transporter 99.8 2.7E-19 5.8E-24 149.6 5.4 178 31-219 13-224 (250)
225 PRK14270 phosphate ABC transpo 99.8 2.1E-19 4.5E-24 150.4 4.6 176 32-219 15-225 (251)
226 PRK10762 D-ribose transporter 99.8 2.6E-19 5.7E-24 163.7 5.5 168 36-219 267-474 (501)
227 PRK14251 phosphate ABC transpo 99.8 4.5E-19 9.7E-24 148.4 6.3 178 30-218 13-224 (251)
228 cd03213 ABCG_EPDR ABCG transpo 99.8 3.6E-19 7.8E-24 143.6 5.6 157 34-219 22-191 (194)
229 PRK10261 glutathione transport 99.8 1.2E-19 2.5E-24 169.9 2.7 172 35-219 30-248 (623)
230 PRK14262 phosphate ABC transpo 99.8 3.2E-19 7E-24 149.1 5.1 178 30-218 12-223 (250)
231 cd03251 ABCC_MsbA MsbA is an e 99.8 2.8E-19 6E-24 148.0 4.6 52 35-99 16-67 (234)
232 PRK14244 phosphate ABC transpo 99.8 2E-19 4.4E-24 150.5 3.8 177 32-219 16-227 (251)
233 COG4525 TauB ABC-type taurine 99.8 8.2E-19 1.8E-23 138.8 6.9 160 36-219 20-214 (259)
234 cd03244 ABCC_MRP_domain2 Domai 99.8 4.9E-19 1.1E-23 145.3 5.9 52 35-99 18-69 (221)
235 PRK14274 phosphate ABC transpo 99.8 5.3E-19 1.2E-23 148.7 6.1 178 30-218 21-232 (259)
236 PRK13546 teichoic acids export 99.8 1E-17 2.2E-22 141.3 14.0 160 34-218 37-221 (264)
237 PRK15439 autoinducer 2 ABC tra 99.8 3.9E-19 8.4E-24 162.9 5.7 167 36-218 278-481 (510)
238 PRK14260 phosphate ABC transpo 99.8 3.6E-19 7.7E-24 149.7 5.0 174 30-214 16-223 (259)
239 cd03254 ABCC_Glucan_exporter_l 99.8 4.4E-19 9.4E-24 146.4 5.4 52 35-99 17-68 (229)
240 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 5.9E-19 1.3E-23 146.5 6.1 166 35-219 17-216 (238)
241 PRK14253 phosphate ABC transpo 99.8 8.8E-19 1.9E-23 146.4 7.0 178 30-219 12-223 (249)
242 TIGR03269 met_CoM_red_A2 methy 99.8 2.7E-19 5.9E-24 164.3 4.3 171 35-219 298-507 (520)
243 PRK14263 phosphate ABC transpo 99.8 3.8E-19 8.3E-24 149.8 4.8 172 31-213 18-221 (261)
244 PRK15134 microcin C ABC transp 99.8 1.7E-19 3.6E-24 166.0 2.9 170 34-219 299-505 (529)
245 CHL00131 ycf16 sulfate ABC tra 99.8 4.7E-19 1E-23 148.3 5.3 170 30-217 16-229 (252)
246 PRK11147 ABC transporter ATPas 99.8 2.5E-18 5.5E-23 161.3 10.6 174 28-219 10-232 (635)
247 COG4148 ModC ABC-type molybdat 99.8 1.7E-18 3.7E-23 143.6 8.3 166 39-218 16-207 (352)
248 PRK15064 ABC transporter ATP-b 99.8 1.3E-18 2.7E-23 160.2 8.4 158 34-219 332-514 (530)
249 cd03248 ABCC_TAP TAP, the Tran 99.8 3.9E-19 8.6E-24 146.4 4.4 137 35-189 28-197 (226)
250 PRK03695 vitamin B12-transport 99.8 1.2E-18 2.7E-23 145.6 7.4 166 36-219 11-212 (248)
251 PRK13642 cbiO cobalt transport 99.8 4.2E-19 9.1E-24 150.8 4.6 164 36-218 22-218 (277)
252 PRK10982 galactose/methyl gala 99.8 1.2E-18 2.6E-23 159.0 7.9 168 35-219 262-470 (491)
253 PRK14236 phosphate transporter 99.8 4.5E-19 9.7E-24 150.2 4.7 179 30-219 34-246 (272)
254 PRK14275 phosphate ABC transpo 99.8 5.6E-19 1.2E-23 150.7 5.2 173 31-219 49-260 (286)
255 cd03252 ABCC_Hemolysin The ABC 99.8 1E-18 2.3E-23 144.9 6.7 167 34-219 15-215 (237)
256 PRK14258 phosphate ABC transpo 99.8 4.8E-19 1E-23 149.2 4.5 173 31-215 17-226 (261)
257 PRK14243 phosphate transporter 99.8 6.9E-19 1.5E-23 148.5 5.5 174 29-214 18-224 (264)
258 cd03369 ABCC_NFT1 Domain 2 of 99.8 1E-18 2.3E-23 142.1 6.3 161 35-218 22-201 (207)
259 cd03222 ABC_RNaseL_inhibitor T 99.8 6.5E-18 1.4E-22 134.3 10.5 134 30-213 9-145 (177)
260 PRK09580 sufC cysteine desulfu 99.8 9.4E-19 2E-23 146.0 6.0 56 31-99 11-68 (248)
261 cd03232 ABC_PDR_domain2 The pl 99.8 6.2E-19 1.3E-23 142.0 4.6 155 34-219 20-189 (192)
262 TIGR03269 met_CoM_red_A2 methy 99.8 5.9E-19 1.3E-23 162.0 5.0 177 30-219 9-248 (520)
263 PRK14238 phosphate transporter 99.8 9.1E-19 2E-23 148.3 5.8 175 30-219 33-245 (271)
264 cd03247 ABCC_cytochrome_bd The 99.8 5.4E-19 1.2E-23 140.6 4.0 156 35-219 16-175 (178)
265 PRK11819 putative ABC transpor 99.8 4E-19 8.6E-24 164.4 3.6 177 27-218 12-238 (556)
266 PRK14249 phosphate ABC transpo 99.8 2.3E-18 5E-23 144.1 7.9 177 31-218 14-224 (251)
267 PRK14265 phosphate ABC transpo 99.7 8.1E-19 1.8E-23 148.8 5.1 174 30-214 29-234 (274)
268 PRK13541 cytochrome c biogenes 99.7 2.4E-19 5.2E-24 144.7 1.6 51 34-98 14-64 (195)
269 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 1.2E-18 2.5E-23 164.9 6.3 162 35-219 467-663 (686)
270 COG1123 ATPase components of v 99.7 8.8E-19 1.9E-23 158.0 5.1 174 35-219 23-234 (539)
271 PRK15064 ABC transporter ATP-b 99.7 1.3E-18 2.8E-23 160.2 6.3 174 30-218 10-230 (530)
272 TIGR03771 anch_rpt_ABC anchore 99.7 1.6E-18 3.5E-23 142.7 6.2 153 42-218 1-190 (223)
273 PRK10418 nikD nickel transport 99.7 1.5E-18 3.2E-23 145.6 5.8 171 33-218 15-219 (254)
274 PRK14252 phosphate ABC transpo 99.7 1.7E-18 3.8E-23 146.0 6.3 181 30-219 25-239 (265)
275 PRK11176 lipid transporter ATP 99.7 1.2E-18 2.6E-23 161.9 5.6 163 36-219 358-557 (582)
276 cd03253 ABCC_ATM1_transporter 99.7 1.3E-18 2.7E-23 144.3 5.1 53 34-99 14-66 (236)
277 cd03290 ABCC_SUR1_N The SUR do 99.7 2.9E-18 6.3E-23 140.5 7.1 53 34-99 14-66 (218)
278 PRK14255 phosphate ABC transpo 99.7 1.1E-18 2.5E-23 146.0 4.5 176 30-218 14-225 (252)
279 COG0396 sufC Cysteine desulfur 99.7 8.5E-19 1.8E-23 141.7 3.5 154 31-198 13-204 (251)
280 PRK13545 tagH teichoic acids e 99.7 2.9E-17 6.2E-22 148.7 13.8 160 35-219 38-222 (549)
281 cd03237 ABC_RNaseL_inhibitor_d 99.7 2.7E-17 5.8E-22 137.5 12.6 152 36-213 9-189 (246)
282 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.5E-18 3.2E-23 145.7 4.9 160 36-213 16-212 (255)
283 PRK14264 phosphate ABC transpo 99.7 1.7E-18 3.8E-23 148.9 5.3 171 30-210 54-269 (305)
284 cd03223 ABCD_peroxisomal_ALDP 99.7 3.8E-17 8.2E-22 128.7 12.3 133 34-198 14-148 (166)
285 PLN03211 ABC transporter G-25; 99.7 6.4E-18 1.4E-22 158.7 9.1 170 29-218 76-285 (659)
286 COG1160 Predicted GTPases [Gen 99.7 4.7E-17 1E-21 143.1 13.9 154 50-211 4-164 (444)
287 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1E-18 2.2E-23 161.6 3.5 177 28-218 11-236 (552)
288 TIGR01257 rim_protein retinal- 99.7 1.3E-18 2.9E-23 176.9 4.7 172 29-218 1945-2148(2272)
289 PF02421 FeoB_N: Ferrous iron 99.7 9.6E-18 2.1E-22 130.3 8.3 92 51-142 2-94 (156)
290 PRK10790 putative multidrug tr 99.7 1.5E-18 3.2E-23 161.6 4.5 163 34-219 354-553 (592)
291 COG4988 CydD ABC-type transpor 99.7 4.1E-18 8.9E-23 153.4 7.1 150 30-198 329-515 (559)
292 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 2E-18 4.3E-23 163.9 5.4 164 34-219 492-690 (710)
293 PRK10636 putative ABC transpor 99.7 1E-17 2.3E-22 157.1 9.8 157 34-219 325-506 (638)
294 PRK11819 putative ABC transpor 99.7 1E-17 2.3E-22 154.9 9.7 155 34-214 337-516 (556)
295 KOG0057|consensus 99.7 1.8E-18 4E-23 154.3 4.4 145 34-198 365-546 (591)
296 COG2274 SunT ABC-type bacterio 99.7 3.5E-18 7.5E-23 160.5 6.5 145 35-198 487-668 (709)
297 PRK14266 phosphate ABC transpo 99.7 6.5E-18 1.4E-22 141.2 7.1 178 31-218 13-223 (250)
298 PRK10938 putative molybdenum t 99.7 8.6E-18 1.9E-22 153.3 8.3 172 31-217 270-480 (490)
299 TIGR02203 MsbA_lipidA lipid A 99.7 2.5E-18 5.4E-23 159.3 4.8 164 35-219 346-546 (571)
300 PRK11174 cysteine/glutathione 99.7 2.4E-18 5.3E-23 160.1 4.7 163 34-219 363-562 (588)
301 TIGR01257 rim_protein retinal- 99.7 3E-18 6.5E-23 174.4 4.8 167 34-218 943-1138(2272)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.3E-17 2.9E-22 154.1 8.5 153 34-214 335-514 (552)
303 COG0488 Uup ATPase components 99.7 1.4E-17 3.1E-22 151.8 7.9 159 27-198 9-210 (530)
304 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.9E-17 4.1E-22 129.0 7.3 137 34-210 12-150 (157)
305 cd01900 YchF YchF subfamily. 99.7 4.5E-17 9.7E-22 137.6 10.1 86 52-137 1-103 (274)
306 cd01899 Ygr210 Ygr210 subfamil 99.7 3.4E-17 7.4E-22 141.2 9.5 86 52-137 1-110 (318)
307 PRK11147 ABC transporter ATPas 99.7 1.6E-16 3.4E-21 149.2 14.6 154 34-214 332-511 (635)
308 cd03289 ABCC_CFTR2 The CFTR su 99.7 7.2E-18 1.6E-22 143.0 5.0 161 34-218 17-214 (275)
309 PRK14257 phosphate ABC transpo 99.7 7.2E-18 1.6E-22 146.4 5.1 174 35-219 96-303 (329)
310 TIGR01193 bacteriocin_ABC ABC- 99.7 6.4E-18 1.4E-22 160.4 5.0 165 34-219 487-687 (708)
311 PRK10535 macrolide transporter 99.7 3.8E-18 8.2E-23 160.3 3.2 168 35-218 22-221 (648)
312 PRK15177 Vi polysaccharide exp 99.7 1.3E-16 2.9E-21 130.5 11.9 165 36-219 2-182 (213)
313 TIGR02868 CydC thiol reductant 99.7 5.7E-18 1.2E-22 155.8 4.2 143 35-197 349-528 (529)
314 cd03250 ABCC_MRP_domain1 Domai 99.7 3E-17 6.4E-22 133.3 7.9 48 35-95 19-66 (204)
315 PRK09601 GTP-binding protein Y 99.7 1.4E-16 2.9E-21 138.9 12.4 88 50-137 3-107 (364)
316 COG1134 TagH ABC-type polysacc 99.7 1.6E-16 3.4E-21 129.9 12.0 161 34-220 40-227 (249)
317 TIGR03375 type_I_sec_LssB type 99.7 1.1E-17 2.4E-22 158.5 5.9 162 36-219 480-678 (694)
318 PTZ00258 GTP-binding protein; 99.7 7.5E-17 1.6E-21 141.9 10.6 89 49-137 21-126 (390)
319 PRK10522 multidrug transporter 99.7 3.4E-17 7.5E-22 151.2 8.9 160 36-221 338-530 (547)
320 PRK11160 cysteine/glutathione 99.7 2E-17 4.4E-22 153.5 7.1 163 35-219 354-552 (574)
321 TIGR00955 3a01204 The Eye Pigm 99.7 7.2E-17 1.6E-21 151.0 10.5 171 33-220 37-247 (617)
322 COG4172 ABC-type uncharacteriz 99.7 1.3E-17 2.7E-22 144.5 4.9 170 34-220 300-507 (534)
323 cd03288 ABCC_SUR2 The SUR doma 99.7 1.6E-17 3.5E-22 139.6 5.4 53 34-99 34-86 (257)
324 COG4136 ABC-type uncharacteriz 99.7 4.8E-17 1E-21 123.9 7.4 146 37-198 18-195 (213)
325 COG2262 HflX GTPases [General 99.7 5.3E-16 1.1E-20 134.8 14.7 203 2-212 147-356 (411)
326 KOG1489|consensus 99.7 2.6E-16 5.6E-21 132.4 12.3 151 51-205 198-360 (366)
327 PRK13657 cyclic beta-1,2-gluca 99.7 1.1E-17 2.4E-22 155.7 4.6 162 35-218 349-547 (588)
328 COG4161 ArtP ABC-type arginine 99.7 1E-17 2.2E-22 129.1 3.5 154 34-200 15-203 (242)
329 PRK09602 translation-associate 99.7 2.4E-16 5.3E-21 139.7 12.8 171 51-225 3-229 (396)
330 PRK12298 obgE GTPase CgtA; Rev 99.7 5.6E-16 1.2E-20 137.2 14.8 158 51-209 161-330 (390)
331 TIGR02204 MsbA_rel ABC transpo 99.7 1.4E-17 3.1E-22 154.5 4.8 162 36-219 355-553 (576)
332 TIGR00958 3a01208 Conjugate Tr 99.7 2.3E-17 5.1E-22 156.6 6.3 163 35-219 495-692 (711)
333 COG0488 Uup ATPase components 99.7 6.3E-17 1.4E-21 147.7 8.4 135 35-198 336-496 (530)
334 TIGR02857 CydD thiol reductant 99.7 1.7E-17 3.7E-22 152.6 4.7 145 35-198 336-517 (529)
335 COG4987 CydC ABC-type transpor 99.7 5.5E-17 1.2E-21 144.8 7.2 145 35-198 352-533 (573)
336 COG4133 CcmA ABC-type transpor 99.7 2.6E-16 5.5E-21 123.8 10.0 136 34-188 15-176 (209)
337 TIGR01842 type_I_sec_PrtD type 99.7 4.6E-17 1E-21 150.3 6.8 163 35-219 332-532 (544)
338 PRK13409 putative ATPase RIL; 99.7 3E-17 6.5E-22 152.5 5.4 147 37-213 355-527 (590)
339 PRK13409 putative ATPase RIL; 99.7 3.9E-17 8.5E-22 151.7 5.6 166 28-213 80-284 (590)
340 TIGR03156 GTP_HflX GTP-binding 99.7 1E-15 2.3E-20 133.9 14.2 198 3-208 145-348 (351)
341 TIGR01194 cyc_pep_trnsptr cycl 99.7 1.7E-16 3.6E-21 146.9 9.5 160 36-220 357-550 (555)
342 PRK12299 obgE GTPase CgtA; Rev 99.7 3.1E-15 6.8E-20 130.1 16.5 160 50-210 159-326 (335)
343 COG4778 PhnL ABC-type phosphon 99.7 4.6E-17 1E-21 126.4 4.4 150 36-199 26-213 (235)
344 TIGR01187 potA spermidine/putr 99.7 2.4E-17 5.3E-22 143.0 3.2 148 54-218 1-179 (325)
345 PLN03073 ABC transporter F fam 99.7 1.7E-15 3.7E-20 143.4 15.5 155 36-219 524-703 (718)
346 TIGR01846 type_I_sec_HlyB type 99.7 8.3E-17 1.8E-21 152.5 6.4 162 36-219 472-670 (694)
347 PRK10789 putative multidrug tr 99.7 6.1E-17 1.3E-21 150.2 5.3 53 35-100 329-381 (569)
348 COG1101 PhnK ABC-type uncharac 99.7 5.3E-17 1.1E-21 130.3 4.1 149 32-197 17-208 (263)
349 TIGR01192 chvA glucan exporter 99.6 1.2E-16 2.7E-21 148.6 6.0 162 35-218 349-547 (585)
350 PLN03073 ABC transporter F fam 99.6 9.5E-17 2.1E-21 151.9 5.3 182 27-219 183-420 (718)
351 COG0536 Obg Predicted GTPase [ 99.6 2.4E-15 5.2E-20 127.9 13.0 136 51-187 161-303 (369)
352 COG1084 Predicted GTPase [Gene 99.6 1.3E-14 2.9E-19 122.8 17.4 150 49-204 168-328 (346)
353 COG4674 Uncharacterized ABC-ty 99.6 4.6E-17 1E-21 128.8 2.4 156 27-198 11-206 (249)
354 cd03238 ABC_UvrA The excision 99.6 9.7E-16 2.1E-20 121.8 9.7 145 34-213 8-161 (176)
355 COG1132 MdlB ABC-type multidru 99.6 1.1E-16 2.3E-21 148.6 4.8 163 34-218 342-541 (567)
356 cd03291 ABCC_CFTR1 The CFTR su 99.6 3.7E-16 8E-21 133.0 7.5 51 33-96 49-99 (282)
357 COG0012 Predicted GTPase, prob 99.6 1.5E-15 3.2E-20 131.0 11.2 88 50-137 3-108 (372)
358 COG4167 SapF ABC-type antimicr 99.6 3.4E-16 7.3E-21 123.0 5.9 137 36-189 28-196 (267)
359 PRK12296 obgE GTPase CgtA; Rev 99.6 1E-14 2.2E-19 132.0 16.2 160 49-208 159-336 (500)
360 PRK11058 GTPase HflX; Provisio 99.6 7E-15 1.5E-19 131.6 14.5 203 2-211 152-361 (426)
361 TIGR02729 Obg_CgtA Obg family 99.6 1.6E-14 3.5E-19 125.4 15.8 158 50-208 158-325 (329)
362 TIGR00954 3a01203 Peroxysomal 99.6 3.1E-16 6.7E-21 147.7 5.5 139 35-198 466-639 (659)
363 TIGR00956 3a01205 Pleiotropic 99.6 6E-16 1.3E-20 155.5 7.8 163 34-215 776-978 (1394)
364 KOG0927|consensus 99.6 4.6E-16 1E-20 138.8 6.1 151 40-218 409-591 (614)
365 TIGR00957 MRP_assoc_pro multi 99.6 4.5E-16 9.7E-21 157.8 6.8 162 35-219 1300-1498(1522)
366 PLN03232 ABC transporter C fam 99.6 4.3E-16 9.3E-21 157.7 6.5 160 35-219 1250-1448(1495)
367 TIGR00436 era GTP-binding prot 99.6 1.9E-14 4.1E-19 121.8 15.4 157 51-213 2-165 (270)
368 PLN03130 ABC transporter C fam 99.6 6E-16 1.3E-20 157.2 7.0 162 35-219 1253-1451(1622)
369 PTZ00243 ABC transporter; Prov 99.6 5.4E-16 1.2E-20 157.2 6.3 161 36-219 1325-1523(1560)
370 PLN03140 ABC transporter G fam 99.6 1.2E-15 2.7E-20 153.3 7.7 171 33-220 177-418 (1470)
371 KOG0055|consensus 99.6 8.5E-16 1.8E-20 148.4 6.1 145 35-198 367-548 (1228)
372 PRK12297 obgE GTPase CgtA; Rev 99.6 2.7E-14 5.9E-19 127.4 15.3 156 51-210 160-325 (424)
373 TIGR00956 3a01205 Pleiotropic 99.6 1E-15 2.2E-20 153.9 6.7 173 33-219 73-290 (1394)
374 KOG1491|consensus 99.6 7.1E-15 1.5E-19 124.7 10.7 176 49-224 20-235 (391)
375 PTZ00265 multidrug resistance 99.6 5.4E-16 1.2E-20 156.2 4.6 170 35-215 1182-1433(1466)
376 KOG0058|consensus 99.6 4.4E-16 9.5E-21 143.2 3.4 134 36-188 483-650 (716)
377 KOG0059|consensus 99.6 1.8E-15 4E-20 146.4 7.6 165 36-216 580-774 (885)
378 COG0486 ThdF Predicted GTPase 99.6 1.9E-14 4.2E-19 127.0 13.4 90 49-139 217-309 (454)
379 COG4172 ABC-type uncharacteriz 99.6 6.5E-16 1.4E-20 134.0 3.1 176 34-220 23-238 (534)
380 PLN03140 ABC transporter G fam 99.6 3.9E-15 8.4E-20 149.8 8.8 161 35-214 894-1094(1470)
381 COG1160 Predicted GTPases [Gen 99.6 1.4E-13 3.1E-18 121.3 16.6 155 49-209 178-348 (444)
382 KOG0061|consensus 99.6 6.1E-15 1.3E-19 137.5 8.6 140 33-189 42-217 (613)
383 COG4618 ArpD ABC-type protease 99.6 6.7E-16 1.5E-20 137.0 1.8 161 34-213 349-551 (580)
384 TIGR01271 CFTR_protein cystic 99.6 2.8E-15 6E-20 151.7 6.2 160 34-219 1232-1430(1490)
385 PTZ00265 multidrug resistance 99.6 2E-15 4.3E-20 152.2 4.8 52 35-99 399-451 (1466)
386 cd01878 HflX HflX subfamily. 99.6 1.7E-13 3.6E-18 110.9 14.7 191 10-208 4-201 (204)
387 COG0370 FeoB Fe2+ transport sy 99.5 1E-13 2.2E-18 127.2 13.7 93 50-142 4-97 (653)
388 cd01898 Obg Obg subfamily. Th 99.5 3.6E-13 7.9E-18 105.2 14.9 89 51-139 2-91 (170)
389 KOG0056|consensus 99.5 1.1E-15 2.5E-20 135.1 -0.4 145 34-197 551-732 (790)
390 PF00005 ABC_tran: ABC transpo 99.5 5.1E-16 1.1E-20 117.9 -3.6 49 38-99 2-50 (137)
391 cd01881 Obg_like The Obg-like 99.5 4.6E-13 9.9E-18 105.0 13.0 86 54-139 1-87 (176)
392 KOG0054|consensus 99.5 2.8E-14 6E-19 140.5 7.2 157 35-213 1154-1353(1381)
393 PRK15494 era GTPase Era; Provi 99.5 6.9E-13 1.5E-17 115.8 15.3 171 36-215 34-219 (339)
394 TIGR00092 GTP-binding protein 99.5 2E-13 4.3E-18 119.2 11.6 88 50-137 3-108 (368)
395 cd03270 ABC_UvrA_I The excisio 99.5 3.3E-13 7.1E-18 111.4 12.4 35 33-69 7-42 (226)
396 PF01926 MMR_HSR1: 50S ribosom 99.5 2.4E-13 5.1E-18 100.4 10.1 88 51-138 1-91 (116)
397 COG4615 PvdE ABC-type sideroph 99.5 1.8E-13 4E-18 118.6 10.1 153 38-214 340-529 (546)
398 PRK00089 era GTPase Era; Revie 99.5 1.8E-12 3.9E-17 110.8 14.9 157 50-212 6-171 (292)
399 KOG0055|consensus 99.5 3E-14 6.4E-19 137.9 3.7 145 34-197 1003-1184(1228)
400 KOG1191|consensus 99.5 3.8E-13 8.2E-18 119.1 9.9 110 23-137 247-359 (531)
401 COG4138 BtuD ABC-type cobalami 99.4 3.1E-13 6.6E-18 105.7 5.9 154 36-213 14-212 (248)
402 TIGR01271 CFTR_protein cystic 99.4 2.8E-13 6E-18 137.4 6.5 50 34-96 439-488 (1490)
403 cd03278 ABC_SMC_barmotin Barmo 99.4 2.2E-13 4.8E-18 110.2 3.7 35 38-75 14-48 (197)
404 PRK09554 feoB ferrous iron tra 99.4 1.4E-11 3E-16 117.5 15.8 149 50-209 4-165 (772)
405 PRK05291 trmE tRNA modificatio 99.4 7.5E-12 1.6E-16 113.1 12.6 122 12-139 183-307 (449)
406 TIGR00957 MRP_assoc_pro multi 99.4 1.1E-12 2.3E-17 133.4 7.6 49 35-96 652-700 (1522)
407 KOG0066|consensus 99.3 1.8E-12 3.9E-17 113.9 7.2 141 36-197 602-760 (807)
408 KOG0065|consensus 99.3 2.2E-12 4.9E-17 125.4 7.6 147 35-199 805-991 (1391)
409 TIGR03594 GTPase_EngA ribosome 99.3 2.4E-11 5.1E-16 109.2 13.7 151 51-210 1-158 (429)
410 PLN03130 ABC transporter C fam 99.3 2.1E-12 4.6E-17 131.6 7.0 48 35-95 631-679 (1622)
411 PTZ00243 ABC transporter; Prov 99.3 1.6E-11 3.5E-16 124.9 12.8 49 34-95 673-721 (1560)
412 cd01897 NOG NOG1 is a nucleola 99.3 1.7E-10 3.8E-15 89.8 15.9 158 51-209 2-165 (168)
413 KOG0062|consensus 99.3 9.2E-12 2E-16 111.0 9.2 52 160-211 216-273 (582)
414 PLN03232 ABC transporter C fam 99.3 2.3E-12 4.9E-17 130.9 5.9 39 35-75 631-669 (1495)
415 PRK00093 GTP-binding protein D 99.3 8.2E-11 1.8E-15 105.9 15.2 150 51-209 3-159 (435)
416 COG4178 ABC-type uncharacteriz 99.3 2.4E-11 5.3E-16 111.5 11.8 141 37-206 409-582 (604)
417 TIGR00450 mnmE_trmE_thdF tRNA 99.3 5.4E-11 1.2E-15 107.2 14.0 91 49-139 203-295 (442)
418 cd01879 FeoB Ferrous iron tran 99.3 1.2E-10 2.7E-15 89.5 14.1 85 54-139 1-87 (158)
419 COG5265 ATM1 ABC-type transpor 99.3 1.4E-13 3E-18 120.1 -3.1 154 34-212 276-476 (497)
420 COG1129 MglA ABC-type sugar tr 99.3 9E-12 1.9E-16 112.2 8.1 168 34-220 272-481 (500)
421 cd03280 ABC_MutS2 MutS2 homolo 99.3 6.3E-11 1.4E-15 96.0 12.1 34 35-70 15-49 (200)
422 PRK03003 GTP-binding protein D 99.3 1.5E-10 3.2E-15 105.5 15.2 155 49-209 211-379 (472)
423 cd03273 ABC_SMC2_euk Eukaryoti 99.3 9.7E-12 2.1E-16 104.1 6.9 47 160-209 188-237 (251)
424 PRK00093 GTP-binding protein D 99.3 2.5E-10 5.4E-15 102.8 16.5 154 49-208 173-340 (435)
425 cd03272 ABC_SMC3_euk Eukaryoti 99.3 2.6E-11 5.7E-16 100.8 8.9 52 160-213 180-233 (243)
426 cd03283 ABC_MutS-like MutS-lik 99.2 3.8E-12 8.1E-17 103.2 3.6 30 42-73 20-49 (199)
427 cd04163 Era Era subfamily. Er 99.2 5.8E-10 1.3E-14 85.7 15.6 154 50-209 4-166 (168)
428 cd01894 EngA1 EngA1 subfamily. 99.2 3E-10 6.5E-15 87.0 13.5 146 53-207 1-153 (157)
429 PRK03003 GTP-binding protein D 99.2 2.6E-10 5.7E-15 103.8 14.4 153 50-210 39-197 (472)
430 TIGR03594 GTPase_EngA ribosome 99.2 5.3E-10 1.1E-14 100.4 16.0 154 49-208 172-340 (429)
431 PRK09518 bifunctional cytidyla 99.2 4.9E-10 1.1E-14 106.7 16.2 154 49-210 275-434 (712)
432 PRK09518 bifunctional cytidyla 99.2 4E-10 8.7E-15 107.3 15.6 155 49-209 450-618 (712)
433 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 1.3E-10 2.8E-15 93.7 9.5 88 51-138 2-95 (196)
434 KOG0927|consensus 99.2 4.3E-11 9.3E-16 107.4 6.1 44 30-75 84-127 (614)
435 cd01895 EngA2 EngA2 subfamily. 99.2 3.4E-09 7.4E-14 82.2 16.2 90 50-139 3-97 (174)
436 cd04164 trmE TrmE (MnmE, ThdF, 99.1 4.7E-10 1E-14 85.8 10.5 91 49-139 1-93 (157)
437 cd04160 Arfrp1 Arfrp1 subfamil 99.1 1.3E-09 2.7E-14 84.9 13.0 82 51-139 1-86 (167)
438 TIGR00437 feoB ferrous iron tr 99.1 1E-09 2.2E-14 102.3 13.5 84 56-139 1-85 (591)
439 cd03271 ABC_UvrA_II The excisi 99.1 5.1E-10 1.1E-14 94.2 10.2 34 35-70 9-42 (261)
440 KOG0410|consensus 99.1 2.7E-10 5.9E-15 96.6 8.4 138 15-155 147-288 (410)
441 cd00879 Sar1 Sar1 subfamily. 99.1 3.5E-09 7.5E-14 84.4 14.5 87 40-139 13-99 (190)
442 cd04155 Arl3 Arl3 subfamily. 99.1 1.9E-09 4E-14 84.5 12.5 77 49-139 14-94 (173)
443 cd03243 ABC_MutS_homologs The 99.1 3.8E-10 8.3E-15 91.5 8.6 35 37-73 19-53 (202)
444 cd01861 Rab6 Rab6 subfamily. 99.1 5.9E-09 1.3E-13 80.5 14.9 82 51-139 2-85 (161)
445 COG0218 Predicted GTPase [Gene 99.1 7.7E-09 1.7E-13 82.7 15.6 153 48-210 23-195 (200)
446 KOG0054|consensus 99.1 2.8E-10 6E-15 112.7 8.7 48 36-96 536-583 (1381)
447 cd03274 ABC_SMC4_euk Eukaryoti 99.1 4.7E-11 1E-15 97.7 2.7 47 160-209 149-198 (212)
448 cd04171 SelB SelB subfamily. 99.1 1.5E-08 3.3E-13 78.1 16.2 81 51-138 2-86 (164)
449 cd03279 ABC_sbcCD SbcCD and ot 99.1 9.8E-10 2.1E-14 89.8 9.6 34 37-72 17-51 (213)
450 PRK00454 engB GTP-binding prot 99.0 6.2E-09 1.4E-13 83.2 12.7 151 49-208 24-190 (196)
451 TIGR00231 small_GTP small GTP- 99.0 1.7E-08 3.7E-13 76.4 14.2 57 51-107 3-61 (161)
452 cd04159 Arl10_like Arl10-like 99.0 1.7E-08 3.6E-13 77.0 13.5 79 52-139 2-80 (159)
453 smart00175 RAB Rab subfamily o 99.0 2.7E-08 6E-13 76.8 14.9 147 51-208 2-158 (164)
454 cd00880 Era_like Era (E. coli 99.0 3.2E-08 7E-13 74.9 14.9 87 54-140 1-89 (163)
455 KOG1423|consensus 99.0 2.1E-09 4.4E-14 90.7 8.8 90 49-138 72-167 (379)
456 cd01853 Toc34_like Toc34-like 99.0 4.8E-09 1E-13 87.9 10.8 61 49-109 31-92 (249)
457 cd03240 ABC_Rad50 The catalyti 99.0 9.6E-09 2.1E-13 83.5 12.4 41 158-198 137-183 (204)
458 smart00178 SAR Sar1p-like memb 99.0 1.6E-08 3.4E-13 80.6 13.3 81 49-139 17-97 (184)
459 KOG0060|consensus 99.0 1.9E-09 4.1E-14 97.7 8.6 146 35-205 449-634 (659)
460 cd01889 SelB_euk SelB subfamil 99.0 4.3E-08 9.4E-13 78.5 15.6 150 51-213 2-187 (192)
461 cd03275 ABC_SMC1_euk Eukaryoti 99.0 2.4E-09 5.2E-14 89.5 8.1 49 160-211 177-229 (247)
462 KOG0064|consensus 98.9 1.6E-09 3.5E-14 97.3 7.0 44 30-75 491-534 (728)
463 cd01858 NGP_1 NGP-1. Autoanti 98.9 2.2E-09 4.7E-14 83.5 7.0 55 49-106 102-157 (157)
464 KOG0062|consensus 98.9 1.1E-09 2.3E-14 98.0 5.9 134 37-198 380-539 (582)
465 TIGR03598 GTPase_YsxC ribosome 98.9 1.6E-08 3.5E-13 80.1 11.7 121 49-178 18-147 (179)
466 cd00154 Rab Rab family. Rab G 98.9 6.9E-08 1.5E-12 73.4 14.9 82 51-139 2-85 (159)
467 cd01866 Rab2 Rab2 subfamily. 98.9 7.2E-08 1.6E-12 75.4 15.2 82 51-139 6-89 (168)
468 TIGR02858 spore_III_AA stage I 98.9 5.3E-09 1.1E-13 88.5 9.1 42 50-102 112-153 (270)
469 cd04114 Rab30 Rab30 subfamily. 98.9 7.4E-08 1.6E-12 75.0 14.8 83 50-139 8-92 (169)
470 cd00876 Ras Ras family. The R 98.9 5.5E-08 1.2E-12 74.6 13.8 81 51-139 1-83 (160)
471 cd04178 Nucleostemin_like Nucl 98.9 2.5E-09 5.4E-14 84.7 6.4 55 49-106 117-172 (172)
472 cd01868 Rab11_like Rab11-like. 98.9 7.4E-08 1.6E-12 74.7 14.7 82 51-139 5-88 (165)
473 cd04138 H_N_K_Ras_like H-Ras/N 98.9 7.3E-08 1.6E-12 74.0 14.4 81 51-139 3-85 (162)
474 cd01876 YihA_EngB The YihA (En 98.9 3.1E-08 6.6E-13 76.2 12.3 148 52-208 2-167 (170)
475 COG3845 ABC-type uncharacteriz 98.9 4E-09 8.7E-14 94.0 7.8 167 35-218 272-481 (501)
476 PRK04213 GTP-binding protein; 98.9 8.2E-08 1.8E-12 77.3 14.4 55 49-107 9-63 (201)
477 cd01855 YqeH YqeH. YqeH is an 98.9 5.1E-09 1.1E-13 83.9 7.3 55 49-106 127-190 (190)
478 cd01849 YlqF_related_GTPase Yl 98.9 1.2E-08 2.5E-13 79.3 9.0 55 49-106 100-155 (155)
479 cd03282 ABC_MSH4_euk MutS4 hom 98.9 1.1E-08 2.3E-13 83.3 8.9 39 33-73 15-53 (204)
480 cd01862 Rab7 Rab7 subfamily. 98.9 1.5E-07 3.2E-12 73.3 15.1 81 51-139 2-85 (172)
481 cd00881 GTP_translation_factor 98.9 1.6E-07 3.6E-12 74.0 15.5 82 51-139 1-98 (189)
482 cd04158 ARD1 ARD1 subfamily. 98.9 1E-07 2.2E-12 74.7 14.2 79 51-139 1-79 (169)
483 COG4170 SapD ABC-type antimicr 98.9 4.4E-09 9.4E-14 84.9 6.3 165 34-209 20-228 (330)
484 cd04145 M_R_Ras_like M-Ras/R-R 98.9 1.4E-07 3.1E-12 72.8 14.7 82 50-139 3-86 (164)
485 COG1245 Predicted ATPase, RNas 98.9 6.8E-09 1.5E-13 91.9 7.8 140 38-199 353-517 (591)
486 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 1.4E-07 2.9E-12 73.4 14.5 82 51-139 4-87 (166)
487 KOG2355|consensus 98.9 1.1E-08 2.4E-13 82.2 7.9 37 36-74 29-65 (291)
488 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 1.4E-07 3.1E-12 74.3 13.7 80 50-139 16-95 (174)
489 TIGR03238 dnd_assoc_3 dnd syst 98.8 1.9E-09 4E-14 96.7 3.1 49 36-99 21-70 (504)
490 cd03276 ABC_SMC6_euk Eukaryoti 98.8 2E-08 4.4E-13 81.3 8.9 48 159-206 130-182 (198)
491 cd01867 Rab8_Rab10_Rab13_like 98.8 1.8E-07 3.9E-12 73.0 14.0 82 50-139 4-88 (167)
492 cd04157 Arl6 Arl6 subfamily. 98.8 1.3E-07 2.9E-12 72.9 13.0 81 51-139 1-81 (162)
493 TIGR02836 spore_IV_A stage IV 98.8 2.1E-07 4.4E-12 82.3 15.5 164 49-219 17-241 (492)
494 TIGR00991 3a0901s02IAP34 GTP-b 98.8 6E-08 1.3E-12 83.1 11.6 61 49-109 38-99 (313)
495 cd00878 Arf_Arl Arf (ADP-ribos 98.8 1.7E-07 3.8E-12 72.1 13.3 79 51-139 1-79 (158)
496 PTZ00132 GTP-binding nuclear p 98.8 1.3E-07 2.8E-12 77.1 13.2 30 160-189 170-204 (215)
497 PRK09866 hypothetical protein; 98.8 4.7E-07 1E-11 83.9 17.9 56 14-83 48-104 (741)
498 COG2401 ABC-type ATPase fused 98.8 1.6E-09 3.5E-14 94.9 1.8 167 19-198 378-568 (593)
499 cd01863 Rab18 Rab18 subfamily. 98.8 3.1E-07 6.7E-12 70.8 14.5 82 51-139 2-85 (161)
500 cd01888 eIF2_gamma eIF2-gamma 98.8 3.6E-07 7.7E-12 74.1 15.4 153 51-215 2-202 (203)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=278.09 Aligned_cols=225 Identities=60% Similarity=0.967 Sum_probs=206.8
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccc
Q psy2924 1 MARTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~ 80 (225)
|+++|||||||+|+.|+|++|++||+|+....-+.++.+.+|.|.++|...+++||+|++|||||||+|++....+++||
T Consensus 15 ia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~ 94 (365)
T COG1163 15 IARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYP 94 (365)
T ss_pred HHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccC
Confidence 68999999999999999999999999999863333443489999999999999999999999999999999999999999
Q ss_pred cceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCC
Q psy2924 81 FTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKE 160 (225)
Q Consensus 81 ~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~ 160 (225)
|||..+.+|.+.|+|..|+++|+||+...+..+.++.+|+..+++++|+++.++|........+.+...|+..|+.+++.
T Consensus 95 FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~ 174 (365)
T COG1163 95 FTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKR 174 (365)
T ss_pred ceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999866555778899999999999988
Q ss_pred CCccc------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEEeccCCCC
Q psy2924 161 PPNID------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIYLLNKIGE 225 (225)
Q Consensus 161 ~~~ls------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
+|.+. --.|..++|.+....+++.++-.++.|.+..+.++|++++.+.+.++|.|+.+++||+|+
T Consensus 175 ~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~ 251 (365)
T COG1163 175 PPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDL 251 (365)
T ss_pred CCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccc
Confidence 87666 456677899999999999999888889999999999999999999999999999999996
No 2
>KOG1486|consensus
Probab=100.00 E-value=1.8e-34 Score=234.35 Aligned_cols=224 Identities=61% Similarity=0.989 Sum_probs=212.8
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccc
Q psy2924 1 MARTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~ 80 (225)
|+|+||||+||.++...++.+++.|.++....++-+.++-.|++-++|..++++||-|.+||||||..|+.-....+.|.
T Consensus 14 maRTQKNKaTEyHLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~ye 93 (364)
T KOG1486|consen 14 MARTQKNKATEYHLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAASYE 93 (364)
T ss_pred HHHhhhccchhHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhcee
Confidence 79999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCC
Q psy2924 81 FTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKE 160 (225)
Q Consensus 81 ~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~ 160 (225)
|||....+|.+.++|..|++.|.||+...+.++.++.+|+..+.+-+|+++.++|+...+.+++.++..|+.+|+.+++.
T Consensus 94 FTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~ 173 (364)
T KOG1486|consen 94 FTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKR 173 (364)
T ss_pred eeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999988877888999999999999998
Q ss_pred CCccc------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEEeccCCC
Q psy2924 161 PPNID------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIYLLNKIG 224 (225)
Q Consensus 161 ~~~ls------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (225)
+|.+. ..-|....|......|+..++-.+++|++..+-+.|++++.+.|.++|-||.|++||+|
T Consensus 174 ~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID 249 (364)
T KOG1486|consen 174 KPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKID 249 (364)
T ss_pred CCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccc
Confidence 88777 56777888999999999999988899999999999999999999999999999999998
No 3
>KOG1487|consensus
Probab=99.95 E-value=4e-28 Score=198.06 Aligned_cols=222 Identities=82% Similarity=1.268 Sum_probs=203.3
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccc
Q psy2924 1 MARTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE 80 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~ 80 (225)
|+|+||||.|+.++...++.+.++|++..+ . +.++.+-.|+|.+.+...++++|-|.+|||||+.-++|...+++.|.
T Consensus 13 maktqKNkat~~hlgllkaklaKlrreli~-~-g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s~vasye 90 (358)
T KOG1487|consen 13 MARTQKNKATSFHLGLLKAKLAKLRRELIT-G-GGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE 90 (358)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhHhhcc-C-CCCCCCCCccceeecceeeeEEecCccchhhhhhhhcCCCCcccccc
Confidence 789999999999999999999999999999 3 33343448998876666899999999999999999999999999999
Q ss_pred cceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCC
Q psy2924 81 FTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKE 160 (225)
Q Consensus 81 ~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~ 160 (225)
|||.-..+|.+.+.|..+++.|.||+.+.++.+.++.+|+..+.+-+++++.++|...+...++.++..|+-+|+.+++.
T Consensus 91 fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~ 170 (358)
T KOG1487|consen 91 FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQ 170 (358)
T ss_pred ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCC
Confidence 99998899999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred CCccc--------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEEeccCCC
Q psy2924 161 PPNID--------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIYLLNKIG 224 (225)
Q Consensus 161 ~~~ls--------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (225)
||.+- ++-..+.||.+.+..++..++..++.+.+..+.+.|+++..+.+.+.|-|++|+.||+|
T Consensus 171 pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkId 242 (358)
T KOG1487|consen 171 PPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKID 242 (358)
T ss_pred CCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccc
Confidence 88776 44444679999999999999988888999999999999999999999999999999987
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=9.6e-28 Score=191.92 Aligned_cols=178 Identities=19% Similarity=0.137 Sum_probs=135.5
Q ss_pred HHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
+++...+.|......+++|++|.+ |+.++|+||+||||||||+||.++..+ ++|.|.++|.++....
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~--Gevv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~ 70 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEK--GEVVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK 70 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcC--CCEEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh
Confidence 344456678888899999999999 999999999999999999999999999 9999999998764321
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEEEee------CCCccccHHHHHHHHHhccc--ccCCCCCccc---------
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLD------VLKPLGHKKLIEHELEGFGL--RLNKEPPNID--------- 165 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d------~~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls--------- 165 (225)
-....+..+++++|...+|++.+++.++.. ...+.+.++.+.++|+++|+ ..+..|..||
T Consensus 71 ---~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 71 ---DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred ---hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHH
Confidence 112345567888888888887776544322 23345567788999999999 4677787888
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCC---e-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNA---D-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~---~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.|||||+|||+...++++.++++.. + ++++|+.+- ..+..|..+++..+.+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F--Ar~VadrviFmd~G~i 214 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF--AREVADRVIFMDQGKI 214 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH--HHHhhheEEEeeCCEE
Confidence 8999999999999999999988753 3 777777532 2244555556566544
No 5
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.93 E-value=3.8e-24 Score=177.40 Aligned_cols=175 Identities=69% Similarity=1.116 Sum_probs=153.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
+++|+|+||||||||+|+|+|....+++|||||.++..|.+.+++.+++++|+||.........++..+....++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999999998889999999999999999999999999999998765555556777888889999999
Q ss_pred EEEeeCCCccccHHHHHHHHHhcccccCCCCCccc------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecC
Q psy2924 131 FIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNID------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDA 198 (225)
Q Consensus 131 l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~ls------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~ 198 (225)
++++|......+.+.+.+.++.+|+.+++.++.+. ...+...+|.+....+++.++-.++.|.+..+.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999877666677889999999998888777555 244555788899999999998877888888899
Q ss_pred ChHHHHHHHhccccccceEEeccCCCC
Q psy2924 199 TSDDLIDVVEGNRIYVPCIYLLNKIGE 225 (225)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
++|++++.+.|.+.|.|+.++.||+|+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl 188 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDL 188 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccC
Confidence 999999999999999999999999996
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=7.9e-26 Score=184.79 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=138.4
Q ss_pred HHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
+.....+++.++++.+++||+|+. |++++++||+||||||+|++|.++..| ++|.|.++|.++..+|
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~--gef~vliGpSGsGKTTtLkMINrLiep-----------t~G~I~i~g~~i~~~d 69 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEE--GEFLVLIGPSGSGKTTTLKMINRLIEP-----------TSGEILIDGEDISDLD 69 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecC--CeEEEEECCCCCcHHHHHHHHhcccCC-----------CCceEEECCeecccCC
Confidence 444556788899999999999999 999999999999999999999999999 9999999999988766
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEEE---eeCC--CccccHHHHHHHHHhcccc----cCCCCCccc--------
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFIV---LDVL--KPLGHKKLIEHELEGFGLR----LNKEPPNID-------- 165 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~d~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~ls-------- 165 (225)
.- ..++.++|+-|...+|++.++..++ .... .+.+..+++.++++.+|+. .++.|.+||
T Consensus 70 ~~----~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 70 PV----ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145 (309)
T ss_pred HH----HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence 42 3456688888888888877764222 1111 2234467789999999993 567777888
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++|||-.+..+.+.+..++ .+|++ -+|.+++.+.+.|...++..+.+
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivf-VTHDidEA~kLadri~vm~~G~i 214 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVF-VTHDIDEALKLADRIAVMDAGEI 214 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEE-EecCHHHHHhhhceEEEecCCeE
Confidence 999999999998888877776653 44333 45557888888888777755544
No 7
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=7.8e-26 Score=178.89 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=139.7
Q ss_pred HHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 25 RRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
+...++++++...+++||+|.+ |++||++|||||||||.|.+++|+..| ++|.|.+++.+++...
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~--GEiVGLLGPNGAGKTT~Fymi~Glv~~-----------d~G~i~ld~~diT~lP-- 72 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNS--GEIVGLLGPNGAGKTTTFYMIVGLVRP-----------DSGKILLDDEDITKLP-- 72 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcC--CcEEEEECCCCCCceeEEEEEEEEEec-----------CCceEEECCcccccCC--
Confidence 4456789999999999999999 999999999999999999999999999 9999999999998654
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeE---EEEeeCCC----ccccHHHHHHHHHhcccc--cCCCCCccc----------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLI---FIVLDVLK----PLGHKKLIEHELEGFGLR--LNKEPPNID---------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~d~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------- 165 (225)
++..++.+++|.+|....|+..++. ..++.... ..+.++.+.++|+.+++. .+++...||
T Consensus 73 -m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 73 -MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred -hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 5667888999999999999887652 12222221 123445677889999883 344444555
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||+|+||-...+|.+.++.+. .-|.+ +||++.+.+.++|..+....+.+.
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLI-TDHNVREtL~i~dRaYIi~~G~vl 218 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLI-TDHNVRETLDICDRAYIISDGKVL 218 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEE-ccccHHHHHhhhheEEEEecCeEE
Confidence 999999999987777777766653 33444 899999999999988877655553
No 8
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=4.2e-26 Score=185.98 Aligned_cols=167 Identities=22% Similarity=0.226 Sum_probs=119.7
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+++||+|++ |++++|+||+|||||||||+|.|+..| ++|.+.++|.++...+........+..+
T Consensus 19 ~~L~~v~l~i~~--Ge~vaI~GpSGSGKSTLLniig~ld~p-----------t~G~v~i~g~d~~~l~~~~~~~~R~~~i 85 (226)
T COG1136 19 EALKDVNLEIEA--GEFVAIVGPSGSGKSTLLNLLGGLDKP-----------TSGEVLINGKDLTKLSEKELAKLRRKKI 85 (226)
T ss_pred EecccceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEcCcCCHHHHHHHHHHhE
Confidence 478899999999 999999999999999999999999999 9999999998887654332222233456
Q ss_pred chHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cC-CCCCccc---------------------
Q psy2924 115 GRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LN-KEPPNID--------------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~-~~~~~ls--------------------- 165 (225)
++++|...+++..++..++ +.........+.+.++++.+|+. .. +.|..||
T Consensus 86 GfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iil 165 (226)
T COG1136 86 GFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIIL 165 (226)
T ss_pred EEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEE
Confidence 6666665555555442211 11111113355678889998983 34 5677888
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceE
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCI 217 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
+||||.+||..+.+.+++.+.+++. + |++||+. ++...++..+...++.
T Consensus 166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~---~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP---ELAKYADRVIELKDGK 219 (226)
T ss_pred eeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH---HHHHhCCEEEEEeCCe
Confidence 8999999999999999999987742 3 7788886 3344555555554443
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.6e-24 Score=176.15 Aligned_cols=162 Identities=20% Similarity=0.165 Sum_probs=118.7
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.|.+..+.+|+||+|.+ |++++|+||+|||||||||+|+|+..| ++|.|.++|.++. -|+
T Consensus 10 ~~~f~~~~vl~~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~p-----------~~G~V~~~g~~v~---~p~-- 71 (248)
T COG1116 10 SKSFGGVEVLEDINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEKP-----------TSGEVLLDGRPVT---GPG-- 71 (248)
T ss_pred EEEeCceEEeccceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCcccC---CCC--
Confidence 4466667889999999999 999999999999999999999999999 9999999998762 121
Q ss_pred CCccCCcchHHHHHH------HHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCccc--------------
Q psy2924 108 EGAKDGKGRGRQVIA------VARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNID-------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~------~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls-------------- 165 (225)
..+++++|... +.+|..+.+.... ....+..+.+.++++.+|+ ..+++|..||
T Consensus 72 ----~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 72 ----PDIGYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred ----CCEEEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHh
Confidence 22345555433 3344332222211 2233445678999999999 4778888888
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccc
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||.-.+..+.+.+.++ ..+|+ .-+|+++|...+.|..+++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl-lVTHdi~EAv~LsdRivvl 204 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL-LVTHDVDEAVYLADRVVVL 204 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE-EEeCCHHHHHhhhCEEEEe
Confidence 99999999998777766666554 33433 3455678888888887777
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=6.8e-25 Score=182.17 Aligned_cols=152 Identities=23% Similarity=0.225 Sum_probs=111.7
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.|.++...+++||++++ |++++|+|||||||||||++|+|+..| .+|.|.++|.++..+... .
T Consensus 11 ~y~~~~il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~p-----------~~G~V~l~g~~i~~~~~k----e 73 (258)
T COG1120 11 GYGGKPILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLKP-----------KSGEVLLDGKDIASLSPK----E 73 (258)
T ss_pred EECCeeEEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCCchhhcCHH----H
Confidence 56677889999999999 999999999999999999999999998 999999999988654421 1
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCCc---------cccHHHHHHHHHhcccc--cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKP---------LGHKKLIEHELEGFGLR--LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---------~~~~~~~~~~l~~~~l~--~~~~~~~ls------------- 165 (225)
....+++++|.........+...+..++.+ .++.+.+.++++.+++. .++....||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 223355555654333334443333333322 23345678889999882 455555666
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecC
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDA 198 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~ 198 (225)
+||||++||...+.++++.+++++ .+ |++.|+.
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 999999999999999999998875 22 5566663
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.9e-25 Score=186.00 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=131.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+++||+|++ |+++||||++|||||||+++|.++..| ++|.|.++|+++...+..+++. .++.+
T Consensus 20 ~al~~vsL~I~~--GeI~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~~l~~~~Lr~-~R~~I 85 (339)
T COG1135 20 TALDDVSLEIPK--GEIFGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLTALSEAELRQ-LRQKI 85 (339)
T ss_pred eeeccceEEEcC--CcEEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecccCChHHHHH-HHhhc
Confidence 478899999999 999999999999999999999999999 9999999999988776555543 45667
Q ss_pred chHHHHHHHHhCCCeEE---EEe--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIF---IVL--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l---~~~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
+|++|...++...++.- +.+ .+..+.+..+++.++++.+|+. .++.|..|| .
T Consensus 86 GMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~ 165 (339)
T COG1135 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165 (339)
T ss_pred cEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEe
Confidence 88777666555444321 111 2223344567899999999994 556676777 7
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcCCe-----EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHNAD-----ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~~~-----vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
|||||+|||...+.|++.+++++.+ |+++| .++-+..+|+.+.++..+.++.
T Consensus 166 DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH--Em~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 166 DEATSALDPETTQSILELLKDINRELGLTIVLITH--EMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred cCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec--hHHHHHHHhhhheEeeCCEEEE
Confidence 9999999999999999999887543 44444 4566778888888887776654
No 12
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=5.5e-25 Score=190.08 Aligned_cols=171 Identities=20% Similarity=0.174 Sum_probs=130.1
Q ss_pred HHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 25 RRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
+...++|.+..+.+|+||+|.+ |++++|+|||||||||||++|+|+..| ++|.|.++|++++.+
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~--Gef~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~l--- 72 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKK--GEFVTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITDV--- 72 (352)
T ss_pred EeeeeecCCeeEEecceeeecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCC---
Confidence 4455677888899999999999 999999999999999999999999999 999999999998752
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEeeCC---C--c-cccHHHHHHHHHhccc--ccCCCCCccc-----------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVL---K--P-LGHKKLIEHELEGFGL--RLNKEPPNID----------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~--~-~~~~~~~~~~l~~~~l--~~~~~~~~ls----------- 165 (225)
+..++.+++++|..++|++.++..++.-+. . + .+..+++.++++.+++ ..++.+..||
T Consensus 73 ---pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 73 ---PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred ---ChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHH
Confidence 234567899999999999888743332221 1 1 2345688999999999 3566666777
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccccce
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
+|||+++||...+..+...++++. .+ |.+||+. ++.+.+.|...++..+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq--eEAl~msDrI~Vm~~G 213 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ--EEALAMSDRIAVMNDG 213 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH--HHHhhhccceEEccCC
Confidence 999999999988777777766553 33 6667764 5556666655555333
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.9e-24 Score=169.74 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=123.8
Q ss_pred HHHHhhhccCCCC-CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 23 KLRRELITPKGGG-GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 23 ~~~~~~~~~~~~~-~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
+.+...++|.++. +.+|+||++++ |+++-|+||+|||||||++.|++...| +.|.|.++|.++..+
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~--Gef~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l 69 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPK--GEFVFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRL 69 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecC--ceEEEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeecccc
Confidence 3455667888877 99999999999 999999999999999999999999999 999999999998766
Q ss_pred eCCCCCCCccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------
Q psy2924 102 DLPGIIEGAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------- 165 (225)
Q Consensus 102 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------- 165 (225)
....+ +..++.+++++|...++.+.++..++ +-+..+.+.++++.+.|+.+|+. .+.-|..||
T Consensus 70 ~~~~i-P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 70 KGREI-PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAI 148 (223)
T ss_pred ccccc-chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHH
Confidence 53332 34556678888876555544432221 12334455567899999999993 555566676
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCC---e-EEEeecC
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNA---D-ITLRYDA 198 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~---~-vi~~~~~ 198 (225)
+||||.+|||+...+|++.+.+++. + ++.+|+.
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 8999999999999999998888753 3 5556654
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=8.8e-25 Score=177.40 Aligned_cols=184 Identities=21% Similarity=0.166 Sum_probs=135.2
Q ss_pred HHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE
Q psy2924 21 IAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
+.++|....++..+...++++|+|++ |++++|+|++|+|||||+++|.|+..| ++|+|.++|.++..
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~--Gei~~iiGgSGsGKStlLr~I~Gll~P-----------~~GeI~i~G~~i~~ 74 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPR--GEILAILGGSGSGKSTLLRLILGLLRP-----------DKGEILIDGEDIPQ 74 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecC--CcEEEEECCCCcCHHHHHHHHhccCCC-----------CCCeEEEcCcchhc
Confidence 34567778889999999999999999 999999999999999999999999999 99999999998765
Q ss_pred EeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEee---C---CCccccHHHHHHHHHhcccc---cCCCCCccc------
Q psy2924 101 LDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLD---V---LKPLGHKKLIEHELEGFGLR---LNKEPPNID------ 165 (225)
Q Consensus 101 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d---~---~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------ 165 (225)
.+-... ...+..+++.+|..++|...++..++.- . ..+...++.+..-|+.+|+. .++.|.+||
T Consensus 75 ls~~~~-~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 75 LSEEEL-YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred cCHHHH-HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH
Confidence 432211 1233456777887777776665433211 1 11123345566778888883 566777788
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+||||+||||.....+-++++.++. + ++++| .++.+...+|...+..+..+++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH--Dl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH--DLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC--ChHHHHhhhceEEEEeCCEEEE
Confidence 8999999999888888888777643 3 44444 4577777777777666655544
No 15
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.7e-25 Score=182.11 Aligned_cols=176 Identities=16% Similarity=0.176 Sum_probs=130.1
Q ss_pred HHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
+++...++|.+=++.+++||++.+ |++++||||||||||||+|+|+|++.| +.|+|.++|++++-..
T Consensus 6 ~v~~l~k~FGGl~Al~~Vsl~v~~--Gei~~LIGPNGAGKTTlfNlitG~~~P-----------~~G~v~~~G~~it~l~ 72 (250)
T COG0411 6 EVRGLSKRFGGLTAVNDVSLEVRP--GEIVGLIGPNGAGKTTLFNLITGFYKP-----------SSGTVIFRGRDITGLP 72 (250)
T ss_pred eeccceeecCCEEEEeceeEEEcC--CeEEEEECCCCCCceeeeeeecccccC-----------CCceEEECCcccCCCC
Confidence 345666788888899999999999 999999999999999999999999999 9999999999887543
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeC--------------C---CccccHHHHHHHHHhcccc--cCCCCCc
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDV--------------L---KPLGHKKLIEHELEGFGLR--LNKEPPN 163 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~--------------~---~~~~~~~~~~~~l~~~~l~--~~~~~~~ 163 (225)
+ +..++.++.+-+|....|++.+++.++.-+ . ...+..+.+.++|+.+|+. .+.....
T Consensus 73 p---~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 73 P---HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred H---HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 2 233456777778877777776654322111 0 1123356788899999983 4444444
Q ss_pred cc---------------------ccCCCCCCCHHHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhcccccc
Q psy2924 164 ID---------------------NQVPQSELDLDTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 164 ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
|+ +|||.+|+.+.+..++.+.+.++... -++.-+|.++-++.++|...++.
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~ 224 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN 224 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc
Confidence 44 99999999999999999998887532 22234555666777776655553
No 16
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.7e-23 Score=163.48 Aligned_cols=161 Identities=18% Similarity=0.135 Sum_probs=121.4
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHH
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQV 120 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 120 (225)
++.|+. |++++|+||+|+|||||||.|+|+..| .+|.|.++|++.+... .+.+.+.+.+|.
T Consensus 19 dl~v~~--ge~vAi~GpSGaGKSTLLnLIAGF~~P-----------~~G~i~i~g~d~t~~~------P~~RPVSmlFQE 79 (231)
T COG3840 19 DLTVPA--GEIVAILGPSGAGKSTLLNLIAGFETP-----------ASGEILINGVDHTASP------PAERPVSMLFQE 79 (231)
T ss_pred EEeecC--CcEEEEECCCCccHHHHHHHHHhccCC-----------CCceEEEcCeecCcCC------cccCChhhhhhc
Confidence 444566 999999999999999999999999999 9999999999876422 234556777777
Q ss_pred HHHHhCCCeEEEEeeCCCc-----cccHHHHHHHHHhccc--ccCCCCCccc---------------------ccCCCCC
Q psy2924 121 IAVARTCSLIFIVLDVLKP-----LGHKKLIEHELEGFGL--RLNKEPPNID---------------------NQVPQSE 172 (225)
Q Consensus 121 ~~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~l~~~~l--~~~~~~~~ls---------------------lDEp~~~ 172 (225)
-.+|.+.++.-++--+.++ ..+++.+..++.++|+ ..++-|..|| +||||++
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 6666555544333223322 4556788899999999 4666777777 9999999
Q ss_pred CCHHHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 173 LDLDTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 173 LD~~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
|||..+.+.+..+.+++.+ .++.-+|..+++..+.+..++...+.+.+
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 9999999999998887533 33334556788888888877777776654
No 17
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.5e-24 Score=175.08 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=125.6
Q ss_pred HHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 25 RRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
....+++..+.+.+|+||++++ |++.|++|+|||||||.+++|+|+..| ++|.|.|+|.++...
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~--G~i~GllG~NGAGKTTtfRmILglle~-----------~~G~I~~~g~~~~~~--- 69 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPP--GEIFGLLGPNGAGKTTTFRMILGLLEP-----------TEGEITWNGGPLSQE--- 69 (300)
T ss_pred ecchhccCceeeecceeeeecC--CeEEEeecCCCCCccchHHHHhccCCc-----------cCceEEEcCcchhhh---
Confidence 3456788889999999999999 999999999999999999999999999 999999999887542
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEE-----EeeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFI-----VLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
.+..++|.+....++++.++... -+.+....+....+..+|+++++. ..++...||
T Consensus 70 -----~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 70 -----IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred -----hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHH
Confidence 22234444554555554443210 122333344556778888888883 333344444
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
|||||+||||.+.+.+.+.+.++. ++|++ |+|.++.+.++||..+....+..
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIif-SsH~Me~vEeLCD~llmL~kG~~ 208 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF-SSHRMEHVEELCDRLLMLKKGQT 208 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEE-ecchHHHHHHHhhhhheecCCce
Confidence 999999999998888877776664 44555 78888999999988777754433
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.6e-24 Score=185.00 Aligned_cols=167 Identities=20% Similarity=0.172 Sum_probs=126.9
Q ss_pred HhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCC
Q psy2924 26 RELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105 (225)
Q Consensus 26 ~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g 105 (225)
...++|.+..+.+++||++.. |++++|+|||||||||||++|+|+..| ++|.|.++|.+++...
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~--Gef~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt~l~--- 71 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIED--GEFVVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVTDLP--- 71 (338)
T ss_pred eeEEEcCCceeeecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCC---
Confidence 334455554478899999999 999999999999999999999999999 9999999999887432
Q ss_pred CCCCccCCcchHHHHHHHHhCCCeEEEE---eeCC--CccccHHHHHHHHHhccc--ccCCCCCccc-------------
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTCSLIFIV---LDVL--KPLGHKKLIEHELEGFGL--RLNKEPPNID------------- 165 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~d~~--~~~~~~~~~~~~l~~~~l--~~~~~~~~ls------------- 165 (225)
...+.++|++|...+++++++..++ +... .+.+..+++.+..+.+++ .+++.|..||
T Consensus 72 ---P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 72 ---PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred ---hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH
Confidence 3456789999999899888774333 2222 224446788999999999 4777787888
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccc
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+|||+++||...+..+...++.++ .+ |.+||+. .+.+.+.+...++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq--~EAmtladri~Vm 207 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ--VEAMTLADRIVVM 207 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH--HHHHhhCCEEEEE
Confidence 899999999988877777776654 23 5666653 5555555544444
No 19
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.2e-25 Score=178.84 Aligned_cols=176 Identities=19% Similarity=0.244 Sum_probs=122.4
Q ss_pred HHHhhhcc-CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 24 LRRELITP-KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 24 ~~~~~~~~-~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
++...++| .++.+.+++||+|++ |++|+|||++||||||||++|.|+..| ++|.|.++|.++....
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~--GE~VaiIG~SGaGKSTLLR~lngl~d~-----------t~G~i~~~g~~i~~~~ 72 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQ--GEMVAIIGPSGAGKSTLLRSLNGLVDP-----------TSGEILFNGVQITKLK 72 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCC--CcEEEEECCCCCcHHHHHHHHhcccCC-----------CcceEEecccchhccc
Confidence 34455677 667899999999999 999999999999999999999999888 9999999998876543
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeC-------------CCccccHHHHHHHHHhcccc--cCCCCCccc--
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDV-------------LKPLGHKKLIEHELEGFGLR--LNKEPPNID-- 165 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-------------~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-- 165 (225)
....+ ..+..++|++|...+.++.+++.+++-+ ....+++..+.++|+++|+. ..++...||
T Consensus 73 ~k~lr-~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 73 GKELR-KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred hHHHH-HHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 22221 2344566666665555554443222211 12245567788999999982 333444455
Q ss_pred -------------------ccCCCCCCCHHHHHHHHHHhhhcCC----eEEE-eec-----CChHHHHHHHhccccc
Q psy2924 166 -------------------NQVPQSELDLDTVKTILSEYRIHNA----DITL-RYD-----ATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 -------------------lDEp~~~LD~~~~~~i~~~l~~~~~----~vi~-~~~-----~~~~~~~~~~~~~~~~ 213 (225)
+|||+++|||.+.+.+++.+++.+. ++++ .|+ ...++++-+..|.++|
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 8999999999999999999988753 3333 333 1344555555555555
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.3e-24 Score=183.28 Aligned_cols=179 Identities=21% Similarity=0.150 Sum_probs=125.2
Q ss_pred HHHhhhccC-CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 24 LRRELITPK-GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 24 ~~~~~~~~~-~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
++...+.+. ++.+.+++||++++ |+++|++||||||||||+|+|+|+..| ++|.|.++|.++..-
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~--Gei~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~- 72 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEP--GEIFGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKE- 72 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccC-
Confidence 344556777 58899999999999 999999999999999999999999999 999999999765421
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEE---Ee--eCCCccccHHHHHHHHHhccccc--CCCCCccc----------
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFI---VL--DVLKPLGHKKLIEHELEGFGLRL--NKEPPNID---------- 165 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~--d~~~~~~~~~~~~~~l~~~~l~~--~~~~~~ls---------- 165 (225)
....+..++++.|...+++..++..+ .. .........+.+.++++.+++.. ++....+|
T Consensus 73 ----~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 73 ----PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred ----HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHH
Confidence 01112223333333222222221100 00 01111223456788888888843 44455566
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+||||+||||..+..+.+.++.+.. ..++.++|.++++..++|...+...+.++.
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999988743 367778899999999988777776666654
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.4e-22 Score=166.23 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=113.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++.+.+|+||++++ |++++|+||||||||||+++|+|+..| .+|+|.+.|.++....
T Consensus 13 ~y~~~~vl~~i~l~v~~--G~~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~------- 72 (254)
T COG1121 13 SYGNRPVLEDISLSVEK--GEITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRR------- 72 (254)
T ss_pred EECCEeeeeccEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccc-------
Confidence 45544689999999999 999999999999999999999999999 9999999987654321
Q ss_pred ccCCcchHHHHHHHHhCCC--eEEEEeeC---------CCccccHHHHHHHHHhcccc--cCCCCCccc-----------
Q psy2924 110 AKDGKGRGRQVIAVARTCS--LIFIVLDV---------LKPLGHKKLIEHELEGFGLR--LNKEPPNID----------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~--~~l~~~d~---------~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------- 165 (225)
.+..++|++|...+-..+- +..++.-+ .....+.+.+.++|+++|+. .++....||
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 1223555555331111111 10000001 11123467899999999993 666677777
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcCCe--EEEeecCChHHHHHHHhccccc
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHNAD--ITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~~~--vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||.++|+..+..+.+.+.++..+ .++..+|.+..+....|..+..
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE
Confidence 99999999999999999998887543 3333455566666666654443
No 22
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=7.2e-23 Score=166.68 Aligned_cols=173 Identities=18% Similarity=0.151 Sum_probs=114.6
Q ss_pred hhccCCCC----CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC
Q psy2924 28 LITPKGGG----GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL 103 (225)
Q Consensus 28 ~~~~~~~~----~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~ 103 (225)
...+..+. ..+++||++.+ |+++||+|++|||||||.++|+|+..| +.|.|.++|.++.....
T Consensus 10 ~~~y~~~~~~~~~l~~VS~~i~~--Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----------~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 10 SIVYGGGKFAFHALNNVSLEIER--GETLGIVGESGSGKSTLARLLAGLEKP-----------SSGSILLDGKPLAPKKR 76 (252)
T ss_pred EEEecCCcchhhhhcceeEEecC--CCEEEEEcCCCCCHHHHHHHHhcccCC-----------CCceEEECCcccCcccc
Confidence 34556666 89999999999 999999999999999999999999999 99999999976543211
Q ss_pred CCCCCCccCCcchHHHHHHHHhCCC--e---EEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc----------
Q psy2924 104 PGIIEGAKDGKGRGRQVIAVARTCS--L---IFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------- 165 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~--~---~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------- 165 (225)
.. .....+.+++|.+...-+.- + +...+....-....+++.++++.+|+. +++.|.+||
T Consensus 77 ~~---~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 77 AK---AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred ch---hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence 10 11223344444322111110 0 000001111112234488999999993 778888888
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||...+..+++.+.++.. + ++++|+ +.-+..+++...++..+.+
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd--l~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD--LALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc--HHHHHHHhhheeeeeCCeE
Confidence 9999999999999999999877643 2 566665 3444455555445544443
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.87 E-value=7e-23 Score=176.25 Aligned_cols=174 Identities=16% Similarity=0.093 Sum_probs=116.7
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.+.++.+.+++||+|.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++....
T Consensus 14 ~k~~~~~~~l~~vsl~i~~--Gei~gllGpNGaGKSTLl~~l~Gl~~p-----------~~G~v~i~G~~~~~~~----- 75 (306)
T PRK13537 14 EKRYGDKLVVDGLSFHVQR--GECFGLLGPNGAGKTTTLRMLLGLTHP-----------DAGSISLCGEPVPSRA----- 75 (306)
T ss_pred EEEECCeEEEecceEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEecccch-----
Confidence 3455566789999999999 999999999999999999999999998 9999999998764211
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
...+..+++++|...++...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 01122234433332222222211000 00111112234566778877773 344555566
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++.++|.++++..+++.......+.++
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999987632 24555777788888888876666555443
No 24
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=7.2e-23 Score=175.91 Aligned_cols=171 Identities=18% Similarity=0.126 Sum_probs=112.8
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++... + ...
T Consensus 3 y~~~~~l~~vs~~i~~--Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~--~---~~~ 64 (302)
T TIGR01188 3 YGDFKAVDGVNFKVRE--GEVFGFLGPNGAGKTTTIRMLTTLLRP-----------TSGTARVAGYDVVRE--P---RKV 64 (302)
T ss_pred eCCeeEEeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccC--H---HHH
Confidence 4455688999999999 999999999999999999999999998 999999999765321 0 001
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 144 (302)
T TIGR01188 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144 (302)
T ss_pred HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 11223333322111111110000 00111112234567788888883 455555666
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+++...++....+..+.++
T Consensus 145 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 145 VLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877632 23444666678887777776666555543
No 25
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.86 E-value=9e-23 Score=177.77 Aligned_cols=181 Identities=17% Similarity=0.083 Sum_probs=120.4
Q ss_pred HHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE
Q psy2924 21 IAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
+.+++...+.+.++.+.+++||+|++ |+++||+||||||||||+++|+|+..| ++|.|.++|.++..
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~--Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----------~~G~i~i~G~~~~~ 107 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVAS--GECFGLLGPNGAGKSTIARMILGMTSP-----------DAGKITVLGVPVPA 107 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CceEEEECCEECCc
Confidence 34445555566667789999999999 999999999999999999999999998 99999999986532
Q ss_pred EeCCCCCCCccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------
Q psy2924 101 LDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------- 165 (225)
Q Consensus 101 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------- 165 (225)
.. ...+..+++++|....+...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 108 ~~-----~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~ 182 (340)
T PRK13536 108 RA-----RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLT 182 (340)
T ss_pred ch-----HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHH
Confidence 11 11122233333322221111110000 00111112234456677777773 455555566
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++.++|.++++..+++.......+.++
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999987632 34555777788888888877777555544
No 26
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.86 E-value=4.1e-23 Score=180.95 Aligned_cols=177 Identities=17% Similarity=0.110 Sum_probs=120.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+..+.+.+++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.......
T Consensus 2 ~~~~~~~l~~vs~~i~~--Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----------~~G~I~i~G~~i~~~~~~~~~~~ 68 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAK--GEIFVIMGLSGSGKSTTVRMLNRLIEP-----------TAGQIFIDGENIMKQSPVELREV 68 (363)
T ss_pred ccCCceeEEeeEEEEcC--CCEEEEECCCCChHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHHHH
Confidence 45566788999999999 999999999999999999999999998 99999999987754332111100
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.+..+++++|...++.+.++..++. ......+..+.+.++++.+++. .++.+..||
T Consensus 69 rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred HhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1234555555444443333211110 0111222345678889998883 556666677
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. ...++..+|.++++..+++...++..+.++
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV 209 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999998887652 222333555567777777776666555543
No 27
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.1e-22 Score=163.54 Aligned_cols=171 Identities=18% Similarity=0.159 Sum_probs=112.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+ .
T Consensus 9 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~------~ 69 (213)
T cd03259 9 TYGSVRALDDLSLTVEP--GEFLALLGPSGCGKTTLLRLIAGLERP-----------DSGEILIDGRDVTGVP------P 69 (213)
T ss_pred EeCCeeeecceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcCcCc------h
Confidence 34445688999999999 999999999999999999999999988 8999999998764211 0
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.+..+++++|....+...++...+ .. ........+.+.++++.+++. .++.+..||
T Consensus 70 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 149 (213)
T cd03259 70 ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREP 149 (213)
T ss_pred hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 112344444433333222211000 00 011112234567778888773 344445565
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 150 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 150 SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999987752 223334555566777777776666555443
No 28
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=9.3e-23 Score=182.41 Aligned_cols=184 Identities=17% Similarity=0.191 Sum_probs=143.4
Q ss_pred HHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 22 AKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
.+++.-.++|.+-++.+++||++.+ |++.+|+|.||||||||+|+|+|.++| ++|+|.++|+.+.+.
T Consensus 9 l~~~~i~K~FggV~AL~~v~l~v~~--GEV~aL~GeNGAGKSTLmKiLsGv~~p-----------~~G~I~~~G~~~~~~ 75 (500)
T COG1129 9 LELRGISKSFGGVKALDGVSLTVRP--GEVHALLGENGAGKSTLMKILSGVYPP-----------DSGEILIDGKPVAFS 75 (500)
T ss_pred eeeecceEEcCCceeeccceeEEeC--ceEEEEecCCCCCHHHHHHHHhCcccC-----------CCceEEECCEEccCC
Confidence 4466667888899999999999999 999999999999999999999999999 999999999988764
Q ss_pred eCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc---------cccHHHHHHHHHhcccc--cCCCCCccc-----
Q psy2924 102 DLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP---------LGHKKLIEHELEGFGLR--LNKEPPNID----- 165 (225)
Q Consensus 102 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---------~~~~~~~~~~l~~~~l~--~~~~~~~ls----- 165 (225)
++ ......++..++|.+.++++.++..+++-+..+ ....+.+.++|+++++. .+.....||
T Consensus 76 sp---~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ 152 (500)
T COG1129 76 SP---RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQ 152 (500)
T ss_pred CH---HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHH
Confidence 42 223345778888988888888775444322221 23345677888888773 333444444
Q ss_pred ----------------ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEeccC
Q psy2924 166 ----------------NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYLLNK 222 (225)
Q Consensus 166 ----------------lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
+||||++|+..+.+.+++.++++.. .++++ +|.++++..++|...++.++.++...
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~I-SHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI-SHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-cCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 9999999999999999999988753 34443 34699999999999999888877543
No 29
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.1e-22 Score=170.39 Aligned_cols=182 Identities=16% Similarity=0.110 Sum_probs=116.7
Q ss_pred HHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC
Q psy2924 24 LRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~ 103 (225)
.+...+.+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++...+.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~i~g~~~~~~~~ 93 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVRE--GEIFVIMGLSGSGKSTLLRCINRLIEP-----------TSGKVLIDGQDIAAMSR 93 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccCh
Confidence 33444566677789999999999 999999999999999999999999988 89999999987643221
Q ss_pred CCCCCCccCCcchHHHHHHHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------
Q psy2924 104 PGIIEGAKDGKGRGRQVIAVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------- 165 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------- 165 (225)
.......+..+++++|....+...++...+. .........+.+.++++.+++. .++.+..||
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 1110000122333333322222211110000 0011112234567788888883 455566666
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.+
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i 239 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRL 239 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999887752 22334455556777777776666655444
No 30
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=6.8e-23 Score=165.67 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=126.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
-|.+-.+.+++||++++ |++++|+|+|||||||||++|+|+.++ .+|+|.|+|++++...+ +..
T Consensus 12 ~YG~~~~L~gvsl~v~~--Geiv~llG~NGaGKTTlLkti~Gl~~~-----------~~G~I~~~G~dit~~p~---~~r 75 (237)
T COG0410 12 GYGKIQALRGVSLEVER--GEIVALLGRNGAGKTTLLKTIMGLVRP-----------RSGRIIFDGEDITGLPP---HER 75 (237)
T ss_pred cccceeEEeeeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCeecCCCCH---HHH
Confidence 45556678899999999 999999999999999999999999998 89999999999875432 344
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEee---CCCc-ccc---HHHHHHHHHhcccccCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLD---VLKP-LGH---KKLIEHELEGFGLRLNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d---~~~~-~~~---~~~~~~~l~~~~l~~~~~~~~ls----------------- 165 (225)
.+.++++++|-..+|+..++..++.- .... ... .+.+.+++-++.=..++....||
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 56788888888888877766322211 1111 111 22233332222112334444444
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhccccccceEEecc
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIYVPCIYLLN 221 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
+|||+.+|-|.-.++|++.+++++.. .++.-+.++....++.|..+++..+.++++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEe
Confidence 99999999999999999999887632 344466778888899998888877777654
No 31
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.7e-21 Score=150.62 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=112.0
Q ss_pred HHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
+++..--........+++||.+++ |++++|+||+|||||||+++++.+..| ++|.+.|.|+++.-.+
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~--Ge~iaitGPSG~GKStllk~va~Lisp-----------~~G~l~f~Ge~vs~~~ 71 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRA--GEFIAITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDVSTLK 71 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecC--CceEEEeCCCCccHHHHHHHHHhccCC-----------CCceEEEcCccccccC
Confidence 333334456667789999999999 999999999999999999999999999 9999999999987666
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeE--------EEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc------
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLI--------FIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------ 165 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------ 165 (225)
++.+ ..|+.++.+..++. .+....+....+...+.+.++++++. +.+....||
T Consensus 72 pea~----------Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qr 141 (223)
T COG4619 72 PEAY----------RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQR 141 (223)
T ss_pred hHHH----------HHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHH
Confidence 4432 23344444444332 22222222233566778888888872 566665565
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhcCC-----eEEEeecC
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIHNA-----DITLRYDA 198 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~~~-----~vi~~~~~ 198 (225)
+||||++||+.+.+.+.+.+..+.. -+.++|+.
T Consensus 142 iAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 142 IALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred HHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 9999999999998888888776642 27788875
No 32
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=2.4e-22 Score=163.34 Aligned_cols=166 Identities=20% Similarity=0.172 Sum_probs=108.3
Q ss_pred ccCC-CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 30 TPKG-GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 30 ~~~~-~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
.+.+ +..++++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++...
T Consensus 8 ~~~~~~~~l~~v~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~------- 67 (205)
T cd03226 8 SYKKGTEILDDLSLDLYA--GEIIALTGKNGAGKTTLAKILAGLIKE-----------SSGSILLNGKPIKAK------- 67 (205)
T ss_pred EeCCcCceeeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEhhhH-------
Confidence 3444 5678999999999 999999999999999999999999988 999999999765310
Q ss_pred CccCCcchHHHHHH-HHhCCCeE---EEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 109 GAKDGKGRGRQVIA-VARTCSLI---FIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~-~~~~~~~~---l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
..+..+++++|... .+...++. ....... ....+.+.++++.+++. .++.+..||
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL--DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc--CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 01112333333211 01011110 0000000 11224577788888883 455555666
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCI 217 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999987762 2233445555677777777665554443
No 33
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.9e-22 Score=166.41 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=125.0
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+..-.+.++++++|+. |+.++++|||||||||||++|+|+..| +.|.|.++|+.+. |.... .
T Consensus 10 ~~~~~~~a~~di~l~i~~--Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----------~~G~I~~~~~~l~--D~~~~-~ 73 (345)
T COG1118 10 KRFGAFGALDDISLDIKS--GELVALLGPSGAGKSTLLRIIAGLETP-----------DAGRIRLNGRVLF--DVSNL-A 73 (345)
T ss_pred hhcccccccccceeeecC--CcEEEEECCCCCcHHHHHHHHhCcCCC-----------CCceEEECCEecc--chhcc-c
Confidence 344555667799999999 999999999999999999999999999 9999999998432 22111 1
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeCC-----C--ccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVL-----K--PLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-----~--~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
...+.+++++|...+|+++++..++.-+. . +.+.+.++.++|+.+++. .++.|..||
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 23356788899888888877643332221 1 134456788889988883 556666666
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCI 217 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
||||+.+||...+.++...+.+.+. + +.++| +.++..++.+...++..+.
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH--D~eea~~ladrvvvl~~G~ 215 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH--DQEEALELADRVVVLNQGR 215 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC--CHHHHHhhcceEEEecCCe
Confidence 9999999999988888887776532 2 44554 4577788877777765554
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.1e-22 Score=166.95 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=112.3
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+... ....
T Consensus 10 ~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~-~~~~ 75 (235)
T cd03261 10 FGGRTVLKGVDLDVRR--GEILAIIGPSGSGKSTLLRLIVGLLRP-----------DSGEVLIDGEDISGLSEAE-LYRL 75 (235)
T ss_pred ECCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccChhh-HHHH
Confidence 3445678999999999 999999999999999999999999988 8999999998764322100 0011
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---ee---CCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---LD---VLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~d---~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
+..+++++|....+...++...+ .. ........+.+.++++.+++. .++.+..||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 12234444432222221211000 00 011112234567788888873 355555666
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 999999999999999999887752 223333445567777777776666555543
No 35
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=4.9e-22 Score=166.96 Aligned_cols=184 Identities=21% Similarity=0.201 Sum_probs=134.1
Q ss_pred HhhhccCC-CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 26 RELITPKG-GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 26 ~~~~~~~~-~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
.++....+ -.+.+++||+++. |++++|.|-+|||||||++++.++..| +.|+|.++|.++..++..
T Consensus 32 ~ei~~~tg~vvGv~~~sl~v~~--GeIfViMGLSGSGKSTLvR~~NrLiep-----------t~G~ilv~g~di~~~~~~ 98 (386)
T COG4175 32 AEILKKTGLVVGVNDASLDVEE--GEIFVIMGLSGSGKSTLVRLLNRLIEP-----------TRGEILVDGKDIAKLSAA 98 (386)
T ss_pred HHHHHhhCcEEeeccceeeecC--CeEEEEEecCCCCHHHHHHHHhccCCC-----------CCceEEECCcchhcCCHH
Confidence 34444444 4578899999999 999999999999999999999999999 999999999999887776
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEee-----CCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVLD-----VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-----~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
.++...+..++|++|...++++-+++.++.. +....+..+++.+.++.+|+. .++.|.+||
T Consensus 99 ~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARA 178 (386)
T COG4175 99 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARA 178 (386)
T ss_pred HHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHH
Confidence 6666666678899998887777665433322 223345567788999999994 566777888
Q ss_pred ---------ccCCCCCCCHH----HHHHHHHHhhhcCCeEEE-eecCChHHHHHH-------Hhccccc--cceEEeccC
Q psy2924 166 ---------NQVPQSELDLD----TVKTILSEYRIHNADITL-RYDATSDDLIDV-------VEGNRIY--VPCIYLLNK 222 (225)
Q Consensus 166 ---------lDEp~~~LD~~----~~~~i~~~l~~~~~~vi~-~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~ 222 (225)
+|||||+|||- .+.+++++-..++++|++ +|+ +++.+.+ -+|.++- .|.+++.++
T Consensus 179 la~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD--LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD--LDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred HccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC--HHHHHhccceEEEecCCeEEEeCCHHHHHcCc
Confidence 89999999994 455666666666777554 444 4444443 3443333 555555555
Q ss_pred CC
Q psy2924 223 IG 224 (225)
Q Consensus 223 ~~ 224 (225)
+|
T Consensus 257 An 258 (386)
T COG4175 257 AN 258 (386)
T ss_pred cH
Confidence 54
No 36
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=1.7e-22 Score=165.52 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=102.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+........+..
T Consensus 17 ~~il~~~s~~i~~--G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (218)
T cd03255 17 VQALKGVSLSIEK--GEFVAIVGPSGSGKSTLLNILGGLDRP-----------TSGEVRVDGTDISKLSEKELAAFRRRH 83 (218)
T ss_pred eeEEeeeEEEEcC--CCEEEEEcCCCCCHHHHHHHHhCCcCC-----------CceeEEECCEehhhcchhHHHHHHhhc
Confidence 4578999999999 999999999999999999999999988 899999999876432210000000112
Q ss_pred cchHHHHHHHHhCCCeEE---EE--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 114 KGRGRQVIAVARTCSLIF---IV--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l---~~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+++++|....+...++.. +. ..........+.+.++++.+++. .++.+..||
T Consensus 84 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 163 (218)
T cd03255 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIIL 163 (218)
T ss_pred EEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 333333322222111100 00 00111111234567788888873 344555565
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccc
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+. .++..+..
T Consensus 164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l 213 (218)
T cd03255 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIEL 213 (218)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEe
Confidence 9999999999999999998887632 22333344445543 55554443
No 37
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.86 E-value=6.7e-23 Score=162.47 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=117.1
Q ss_pred HhhhccCCCC-CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 26 RELITPKGGG-GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 26 ~~~~~~~~~~-~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
+..++|.... +..|+||+++. |+++||+|+|||||||+|++|++++.| ++|.+.++|.+... ++.
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~--Gei~GlLG~NGAGKTT~LRmiatlL~P-----------~~G~v~idg~d~~~-~p~ 71 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEE--GEITGLLGENGAGKTTLLRMIATLLIP-----------DSGKVTIDGVDTVR-DPS 71 (245)
T ss_pred ehhhhccCHHhhhhheeEEecc--ceEEEEEcCCCCCchhHHHHHHHhccC-----------CCceEEEeeccccc-ChH
Confidence 3345555544 88999999999 999999999999999999999999999 99999999976542 111
Q ss_pred CCCCCccCCcch------------HHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCC-----------
Q psy2924 105 GIIEGAKDGKGR------------GRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNK----------- 159 (225)
Q Consensus 105 g~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~----------- 159 (225)
.. ++.++. +++.+..|-. +......+.+.++.++.+++++. +++
T Consensus 72 ~v----rr~IGVl~~e~glY~RlT~rEnl~~Fa~-------L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kq 140 (245)
T COG4555 72 FV----RRKIGVLFGERGLYARLTARENLKYFAR-------LNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQ 140 (245)
T ss_pred HH----hhhcceecCCcChhhhhhHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHH
Confidence 11 111111 1111111110 01111122344555666666551 333
Q ss_pred ----------CCCcccccCCCCCCCHHHHHHHHHHhhhcCCe--EEEeecCChHHHHHHHhccccccceEEecc
Q psy2924 160 ----------EPPNIDNQVPQSELDLDTVKTILSEYRIHNAD--ITLRYDATSDDLIDVVEGNRIYVPCIYLLN 221 (225)
Q Consensus 160 ----------~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~--vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
.|..+.+||||+|||......+.+.+.++..+ .++-++|.++++..++|..++...+.++..
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 34445599999999999999999999887543 666688999999999999888877766653
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.4e-21 Score=161.57 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=119.8
Q ss_pred cCCC-CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE-EeCCCCCC
Q psy2924 31 PKGG-GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL-LDLPGIIE 108 (225)
Q Consensus 31 ~~~~-~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~-~d~~g~~~ 108 (225)
+.++ .+.+++||++.+ |++++|+|+||||||||++.++|+..| ++|.|.++|.++.. .+..
T Consensus 13 y~~~~~~l~~v~~~i~~--Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----------~~G~v~~~g~~~~~~~~~~---- 75 (235)
T COG1122 13 YPGRKAALKDVSLEIEK--GERVLLIGPNGSGKSTLLKLLNGLLKP-----------TSGEVLVDGLDTSSEKSLL---- 75 (235)
T ss_pred cCCCceeeeeeEEEECC--CCEEEEECCCCCCHHHHHHHHcCcCcC-----------CCCEEEECCeeccchhhHH----
Confidence 3343 788899999999 999999999999999999999999999 89999999987653 1111
Q ss_pred CccCCcchHHHHHHHHhCCCeEE----------EEee--CCCccccHHHHHHHHHhccc--ccCCCCCccc---------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIF----------IVLD--VLKPLGHKKLIEHELEGFGL--RLNKEPPNID--------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l----------~~~d--~~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls--------- 165 (225)
..+..+++ +||+++--+ +... +...++..+++.++++.+++ ..++++..||
T Consensus 76 ~~~~~vG~------VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 76 ELRQKVGL------VFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred HhhcceEE------EEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHh
Confidence 11222333 333333211 1111 11223456778899999999 3667777888
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+.++++.+.++... .++..+|.++.+....+..+++..+.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~ 218 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe
Confidence 99999999999999999999887532 3444566678888888887777665553
No 39
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.85 E-value=1.4e-22 Score=176.51 Aligned_cols=170 Identities=19% Similarity=0.166 Sum_probs=115.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+..... ..+..+
T Consensus 19 ~~L~~vsl~i~~--Gei~gIiG~sGaGKSTLlr~I~gl~~p-----------~~G~I~i~G~~i~~~~~~~l~-~~r~~I 84 (343)
T TIGR02314 19 QALNNVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TSGSVIVDGQDLTTLSNSELT-KARRQI 84 (343)
T ss_pred EEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhcCE
Confidence 478999999999 999999999999999999999999998 999999999876533211110 112334
Q ss_pred chHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|...++...++..++ . ......+..+.+.++++.+++. .++.+..|| +
T Consensus 85 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLl 164 (343)
T TIGR02314 85 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 164 (343)
T ss_pred EEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 5544443333222211000 0 0111122345677889999883 556666677 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||||++||+.+...+++.++++. .+|+ ..+|.++.+...++...++..+.++
T Consensus 165 DEPts~LD~~t~~~i~~lL~~l~~~~g~tii-liTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 165 DEATSALDPATTQSILELLKEINRRLGLTIL-LITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEE-EEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999988763 3333 3445567777778877777655554
No 40
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.9e-22 Score=176.77 Aligned_cols=168 Identities=20% Similarity=0.145 Sum_probs=118.7
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
.++...+++||++.+ |++++|+|||||||||||++|+|+..| ++|.|.++|.++.... ..+
T Consensus 15 ~~~~~l~~vsl~i~~--Ge~~~llG~sGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~~~------~~~ 75 (356)
T PRK11650 15 GKTQVIKGIDLDVAD--GEFIVLVGPSGCGKSTLLRMVAGLERI-----------TSGEIWIGGRVVNELE------PAD 75 (356)
T ss_pred CCCEEEeeeeEEEcC--CCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCCCC------HHH
Confidence 345578899999999 999999999999999999999999998 9999999998764211 122
Q ss_pred CCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc-------------------
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------- 165 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------- 165 (225)
..+++++|...++++.++..++ .. .....+..+.+.++++.+++. .++.+..||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l 155 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV 155 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4567777766555554442111 11 111122235678889999883 566666777
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.++++.. ..++..+|..+++..+.|...++..+.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 156 FLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 9999999999999988888876532 2233344556777777776666655444
No 41
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.85 E-value=9.1e-22 Score=160.67 Aligned_cols=169 Identities=14% Similarity=0.103 Sum_probs=111.1
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++...+. .
T Consensus 10 ~~~~~~l~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~v~~~g~~~~~~~~------~ 70 (213)
T cd03301 10 FGNVTALDDLNLDIAD--GEFVVLLGPSGCGKTTTLRMIAGLEEP-----------TSGRIYIGGRDVTDLPP------K 70 (213)
T ss_pred ECCeeeeeceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------c
Confidence 4445678999999999 999999999999999999999999988 89999999987642211 1
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12244444433333222221000 00111122234567778888873 455555566
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. .+|+ ..+|..+.+...++.......+.++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi-~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTI-YVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEE-EEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999887652 3333 3445566666667766555554443
No 42
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.85 E-value=2.5e-22 Score=164.08 Aligned_cols=167 Identities=18% Similarity=0.149 Sum_probs=105.3
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|+|.++|.++...+.... ...+.
T Consensus 14 ~~~il~~is~~i~~--G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~ 79 (214)
T TIGR02673 14 GVAALHDVSLHIRK--GEFLFLTGPSGAGKTTLLKLLYGALTP-----------SRGQVRIAGEDVNRLRGRQL-PLLRR 79 (214)
T ss_pred CceeecceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHh
Confidence 34578999999999 999999999999999999999999988 89999999987643211000 00112
Q ss_pred CcchHHHHHHHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
.+++++|....+...++...+. .........+.+.++++.+++. .++.+..||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 2333333322222111110000 0011112234567778887773 344444555
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccc
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+.+
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEe
Confidence 999999999999999999887752 223333445567776666654443
No 43
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=1.6e-22 Score=165.57 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=103.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.... ...+..+
T Consensus 17 ~il~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i 82 (216)
T TIGR00960 17 PALDNLNFHITK--GEMVFLVGHSGAGKSTFLKLILGIEKP-----------TRGKIRFNGQDLTRLRGREI-PFLRRHI 82 (216)
T ss_pred eEEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEehhhcChhHH-HHHHHhc
Confidence 478899999999 999999999999999999999999988 89999999986643211000 0011122
Q ss_pred chHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|....+...++...+ . .........+.+.++++.+++. .++.+..|| +
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333322222211110000 0 0111112234567788888883 455555666 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccc
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999998877631 22333444456666666654444
No 44
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-22 Score=175.67 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=123.0
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.. .+
T Consensus 14 ~~~~~~~~l~~isl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~--~~---- 74 (351)
T PRK11432 14 KRFGSNTVIDNLNLTIKQ--GTMVTLLGPSGCGKTTVLRLVAGLEKP-----------TEGQIFIDGEDVTH--RS---- 74 (351)
T ss_pred EEECCeEEEeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CC----
Confidence 344445578899999999 999999999999999999999999998 99999999987642 11
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
..++.+++++|...++++.++..++ +. .....+..+.+.++++.+++. .++.+..||
T Consensus 75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 1234566777766566555442111 11 111223345678889998883 566666777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+|||+++||+..++.+.+.++++.. ..++..+|..+++..+.|...++..+.++
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999888876532 23444566678888888877777555543
No 45
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=4.8e-22 Score=170.73 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=114.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
++.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.. + + ..
T Consensus 11 ~~~~~~~l~~is~~i~~--Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----------~~G~i~i~g~~~~~-~-~---~~ 72 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQK--GRIVGFLGPNGAGKSTTMKIITGYLPP-----------DSGSVQVCGEDVLQ-N-P---KE 72 (301)
T ss_pred EECCEEEEEEeEEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-C-h---HH
Confidence 44556689999999999 999999999999999999999999988 99999999976532 1 0 01
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.+..+++++|...++...++..++ .......+..+.+.++++.+++. .++.+..||
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 112233333322222221111000 00111112234567788888873 455555566
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+..+.. ..++..+|..+++..+++....+..+.++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887742 24455677778888888776666555443
No 46
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.85 E-value=3.8e-22 Score=162.81 Aligned_cols=167 Identities=17% Similarity=0.119 Sum_probs=106.3
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++.....+ ....
T Consensus 10 ~~~~~~l~~~s~~i~~--G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~--~~~~ 74 (213)
T cd03262 10 FGDFHVLKGIDLTVKK--GEVVVIIGPSGSGKSTLLRCINLLEEP-----------DSGTIIIDGLKLTDDKKN--INEL 74 (213)
T ss_pred ECCeEeecCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccchh--HHHH
Confidence 3345678999999999 999999999999999999999999988 899999999866311000 0011
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 12233333322222111111000 00111112234567778888773 455555566
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccc
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+.+++.+.+.+.++. .+|++ .+|..+.+...++..+.+
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~-~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVV-VTHEMGFAREVADRVIFM 208 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 999999999999999999888753 33333 445567776666655544
No 47
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-22 Score=178.05 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=118.2
Q ss_pred HHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC
Q psy2924 24 LRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~ 103 (225)
...-++.+....+.+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.
T Consensus 31 ~~~~~~~~~~~~~L~~isl~i~~--Gei~~LvG~NGsGKSTLLr~I~Gl~~p-----------~sG~I~i~G~~i~~~~~ 97 (400)
T PRK10070 31 KEQILEKTGLSLGVKDASLAIEE--GEIFVIMGLSGSGKSTMVRLLNRLIEP-----------TRGQVLIDGVDIAKISD 97 (400)
T ss_pred HHHHHhhcCCeEEEEeEEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCC-----------CCCEEEECCEECCcCCH
Confidence 33444555555578999999999 999999999999999999999999998 99999999987653221
Q ss_pred CCCCCCccCCcchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------
Q psy2924 104 PGIIEGAKDGKGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------- 165 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------- 165 (225)
.......+..+++++|...++.+.++..++ . ......+..+.+.++++.+++. .++.+..||
T Consensus 98 ~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LAr 177 (400)
T PRK10070 98 AELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLAR 177 (400)
T ss_pred HHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHH
Confidence 111000112334444433222222211000 0 0111122234577888888883 455666677
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+++..+++..+.+..+.++
T Consensus 178 AL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 178 ALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887652 222333455567777777776666555443
No 48
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.85 E-value=2.7e-22 Score=166.96 Aligned_cols=173 Identities=16% Similarity=0.105 Sum_probs=109.2
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.... ...+.
T Consensus 14 ~~~il~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~ 79 (243)
T TIGR02315 14 GKQALKNINLNINP--GEFVAIIGPSGAGKSTLLRCINRLVEP-----------SSGSILLEGTDITKLRGKKL-RKLRR 79 (243)
T ss_pred CcceeecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CccEEEECCEEhhhCCHHHH-HHHHh
Confidence 45689999999999 999999999999999999999999988 89999999987643211000 00111
Q ss_pred CcchHHHHHHHHhCCCeE---EEEe-e---------CCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 113 GKGRGRQVIAVARTCSLI---FIVL-D---------VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~---l~~~-d---------~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
.+++++|....+...++. .... . ........+.+.++++.+++. .++.+..||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 223322222111111110 0000 0 001112234567788888873 355555566
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999998887752 223333445566666777776666555544
No 49
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=5.7e-22 Score=170.39 Aligned_cols=173 Identities=16% Similarity=0.061 Sum_probs=111.0
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.... .
T Consensus 12 ~~~~~~~~l~~vsl~i~~--Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-----~ 73 (303)
T TIGR01288 12 KSYGDKVVVNDLSFTIAR--GECFGLLGPNGAGKSTIARMLLGMISP-----------DRGKITVLGEPVPSRA-----R 73 (303)
T ss_pred EEeCCeEEEcceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECcccH-----H
Confidence 344555688999999999 999999999999999999999999988 8999999997653110 0
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
..+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 1112233333322211111110000 00111111223455677777773 344555555
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+++...++....+..+.++
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999888763 223444666677777777776666555443
No 50
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=6.3e-22 Score=161.39 Aligned_cols=163 Identities=20% Similarity=0.165 Sum_probs=103.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.. ..+..
T Consensus 14 ~~il~~vs~~i~~--G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~ 76 (211)
T cd03225 14 RPALDDISLTIKK--GEFVLIVGPNGSGKSTLLRLLNGLLGP-----------TSGEVLVDGKDLTKLSLK----ELRRK 76 (211)
T ss_pred eeeecceEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEcccCCHH----HHHhh
Confidence 4578999999999 999999999999999999999999988 899999999766421110 01122
Q ss_pred cchHHHHHHH-HhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIAV-ARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~-~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|.... +...++...+ . .........+.+.++++.+++. .++.+..||
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 156 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3333332211 1111110000 0 0011111234566778888873 455555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccc
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+..
T Consensus 157 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 207 (211)
T cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL 207 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999998877632 23333445566666666654443
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=7.5e-22 Score=163.20 Aligned_cols=172 Identities=19% Similarity=0.180 Sum_probs=109.5
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+... ..
T Consensus 10 ~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~ 73 (232)
T cd03218 10 YGKRKVVNGVSLSVKQ--GEIVGLLGPNGAGKTTTFYMIVGLVKP-----------DSGKILLDGQDITKLPMHK---RA 73 (232)
T ss_pred eCCEEeeccceeEecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccCCHhH---HH
Confidence 3445678999999999 999999999999999999999999988 8999999998654221100 00
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++...+ . .........+.+.++++.+++. .++.+..||
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11233333322222111110000 0 0011111233566777877773 344444555
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+....+.+
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 211 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKV 211 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 999999999999999888887653 22344455556777777777666655544
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.8e-21 Score=159.80 Aligned_cols=164 Identities=20% Similarity=0.140 Sum_probs=106.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++... +..
T Consensus 17 ~~il~~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~---------~~~ 74 (220)
T cd03293 17 VTALEDISLSVEE--GEFVALVGPSGCGKSTLLRIIAGLERP-----------TSGEVLVDGEPVTGP---------GPD 74 (220)
T ss_pred eEEEeceeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccc---------cCc
Confidence 4578899999999 999999999999999999999999988 899999999765310 111
Q ss_pred cchHHHHHHHHhCCCeEEE---E--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFI---V--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~---~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+++++|....+...++... . ..........+.+.++++.+++. .++.+..||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2222222211111111000 0 00111112234567778888773 344555555
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhcccccc--ceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYV--PCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+... .+.++
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 999999999999999999887652 2233334555667777777766665 44443
No 53
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=3.7e-22 Score=163.05 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=105.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++. .
T Consensus 8 ~~~~~~~l~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~--~------- 65 (213)
T cd03235 8 SYGGHPVLEDVSFEVKP--GEFLAIVGPNGAGKSTLLKAILGLLKP-----------TSGSIRVFGKPLE--K------- 65 (213)
T ss_pred EECCEEeeecceeEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCccHH--H-------
Confidence 34445678999999999 999999999999999999999999988 8999999986532 0
Q ss_pred ccCCcchHHHHHH--------HHhCCCeEEEEe-e--CCCccccHHHHHHHHHhcccc--cCCCCCccc-----------
Q psy2924 110 AKDGKGRGRQVIA--------VARTCSLIFIVL-D--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~--------~~~~~~~~l~~~-d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------- 165 (225)
.+..+++++|... +.++........ . ........+.+.++++.+++. .++.+..||
T Consensus 66 ~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 66 ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred HHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHH
Confidence 0011122121111 011100000000 0 001112234567788888873 455555666
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccce
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+.+...
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 999999999999999999887753 223344555566777777766665443
No 54
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.85 E-value=4.2e-22 Score=174.38 Aligned_cols=171 Identities=19% Similarity=0.161 Sum_probs=121.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|||||||||||++|+|+..| ++|.|.++|+++... + .
T Consensus 13 ~~~~~~~l~~vs~~i~~--Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~--~----~ 73 (353)
T TIGR03265 13 RFGAFTALKDISLSVKK--GEFVCLLGPSGCGKTTLLRIIAGLERQ-----------TAGTIYQGGRDITRL--P----P 73 (353)
T ss_pred EeCCeEEEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--C----H
Confidence 44444567899999999 999999999999999999999999998 999999999876421 1 1
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEe---e--CCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVL---D--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~---d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.++.+++++|...++++.++..++. . .....+..+.+.++++.+++. +++.+..||
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2345667677655555544422111 1 111122345678899999983 566666777
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+|||+++||+..+..+.+.++++.. ..++..+|..+++..+.|...++..+.++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999998888876532 22333455567888888877776555543
No 55
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=6.4e-22 Score=174.52 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=135.4
Q ss_pred HHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 25 RRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
+.-.+.|.+-++.+++||+|.+ |++-||+|.||||||||+|+|.|++.| ++|.|.++|+.+.+-++
T Consensus 8 ~~itK~f~~~~And~V~l~v~~--GeIHaLLGENGAGKSTLm~iL~G~~~P-----------~~GeI~v~G~~v~~~sP- 73 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKK--GEIHALLGENGAGKSTLMKILFGLYQP-----------DSGEIRVDGKEVRIKSP- 73 (501)
T ss_pred eccEEEcCCEEecCceeeeecC--CcEEEEeccCCCCHHHHHHHHhCcccC-----------CcceEEECCEEeccCCH-
Confidence 3344567777789999999999 999999999999999999999999999 99999999999876442
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCC--------ccccHHHHHHHHHhcccc--cCCCCCccc---------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK--------PLGHKKLIEHELEGFGLR--LNKEPPNID--------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--------~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------- 165 (225)
.+..+.+++|++|...++++.++..++.-+.. .....+++.++.+++|+. .+.....||
T Consensus 74 --~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 74 --RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred --HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 23446789999999999888887655443322 123456788889999884 444444555
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccce
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
+||||+-|-|.+.+++++.++.+. .+|+++ +|-++++..++|..-+..-+
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~I-THKL~Ev~~iaDrvTVLR~G 216 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFI-THKLKEVMAIADRVTVLRRG 216 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE-eccHHHHHHhhCeeEEEeCC
Confidence 999999999999999999998774 345543 34478888888776666443
No 56
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1e-21 Score=161.23 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=111.2
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.. .+ ..
T Consensus 9 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~--~~---~~ 70 (220)
T cd03265 9 KYGDFEAVRGVSFRVRR--GEIFGLLGPNGAGKTTTIKMLTTLLKP-----------TSGRATVAGHDVVR--EP---RE 70 (220)
T ss_pred EECCEEeeeceeEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecCc--Ch---HH
Confidence 34445678999999999 999999999999999999999999988 89999999876531 00 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.+..+++++|....+...++...+ . ......+..+.+.++++.+++. .++.+..||
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 111222322222111111110000 0 0111112234567788888873 455555666
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999988887652 223334555567777777877777666554
No 57
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.84 E-value=4.8e-22 Score=174.03 Aligned_cols=171 Identities=17% Similarity=0.179 Sum_probs=119.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|+++...+ .
T Consensus 11 ~~~~~~~l~~isl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~~------~ 71 (353)
T PRK10851 11 SFGRTQVLNDISLDIPS--GQMVALLGPSGSGKTTLLRIIAGLEHQ-----------TSGHIRFHGTDVSRLH------A 71 (353)
T ss_pred EeCCeEEEEEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC------H
Confidence 34445578899999999 999999999999999999999999988 9999999998764211 1
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee------CCCccccHHHHHHHHHhcccc--cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD------VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d------~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------- 165 (225)
.++.+++++|...++++.++. .+... .....+..+.+.++++.+++. .++.+..||
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 123456666655444443331 11111 111122345678889999883 566666777
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+++..+++...++..+.++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999998888877532 23333455567777777777666555443
No 58
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.84 E-value=5e-22 Score=166.06 Aligned_cols=177 Identities=16% Similarity=0.096 Sum_probs=111.2
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCC---
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI--- 106 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~--- 106 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+....
T Consensus 12 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 12 KFHGQTVLHGIDLEVKP--GEVVAIIGPSGSGKTTLLRCINLLEQP-----------EAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred EECCeeeeccceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccccccchhh
Confidence 44455689999999999 999999999999999999999999988 89999999987643211000
Q ss_pred -CCCccCCcchHHHHHHHHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 107 -IEGAKDGKGRGRQVIAVARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 107 -~~~~~~~~~~~~~~~~~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
....+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 000111233333322222111111000 00111111234566778888773 344455555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999988876532 23333455567777777777666555543
No 59
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=5.4e-22 Score=163.12 Aligned_cols=173 Identities=17% Similarity=0.106 Sum_probs=108.8
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.... ...+.
T Consensus 14 ~~~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~ 79 (222)
T PRK10908 14 GRQALQGVTFHMRP--GEMAFLTGHSGAGKSTLLKLICGIERP-----------SAGKIWFSGHDITRLKNREV-PFLRR 79 (222)
T ss_pred CCeEEeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCChhHH-HHHHh
Confidence 35578999999999 999999999999999999999999988 89999999987643211000 00111
Q ss_pred CcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 113 GKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
.+++++|....+...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 223333322221111110000 00111112233466778888773 345555566
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999888877531 23333445566777777766666555543
No 60
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.7e-22 Score=164.17 Aligned_cols=171 Identities=18% Similarity=0.159 Sum_probs=105.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+........+..+
T Consensus 23 ~il~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i 89 (233)
T PRK11629 23 DVLHNVSFSIGE--GEMMAIVGSSGSGKSTLLHLLGGLDTP-----------TSGDVIFNGQPMSKLSSAAKAELRNQKL 89 (233)
T ss_pred eeEEeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCHHHHHHHHhccE
Confidence 478999999999 999999999999999999999999988 8999999998764322100000001123
Q ss_pred chHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|....+...++...+ +.........+.+.++++.+++. .++.+..|| +
T Consensus 90 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 169 (233)
T PRK11629 90 GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLA 169 (233)
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333332222211111000 00111122234577888888883 344555566 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||||++||+..++.+.+.+.++. ...++..+|..+.+.. ++..+....+.++
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 170 DEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEE
Confidence 99999999999999998887752 2223334444555544 3444444554443
No 61
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.84 E-value=9.1e-22 Score=161.45 Aligned_cols=168 Identities=19% Similarity=0.148 Sum_probs=108.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++++ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++.... ...+..
T Consensus 15 ~~il~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~ 76 (220)
T cd03263 15 KPAVDDLSLNVYK--GEIFGLLGHNGAGKTTTLKMLTGELRP-----------TSGTAYINGYSIRTDR-----KAARQS 76 (220)
T ss_pred ceeecceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccch-----HHHhhh
Confidence 4578999999999 999999999999999999999999988 8999999998653210 011112
Q ss_pred cchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+++++|....+...++...+ . .........+.+.++++.+++. .++.+..||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 23333321111111110000 0 0001111224466777777772 344444555
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+...+.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999887643 23444556667777777777766665554
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.3e-21 Score=162.72 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=109.0
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.
T Consensus 11 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------ 71 (239)
T cd03296 11 RFGDFVALDDVSLDIPS--GELVALLGPSGSGKTTLLRLIAGLERP-----------DSGTILFGGEDATDVPV------ 71 (239)
T ss_pred EECCEEeeeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------
Confidence 34445688999999999 999999999999999999999999988 89999999976532111
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee--CC----CccccHHHHHHHHHhcccc--cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD--VL----KPLGHKKLIEHELEGFGLR--LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~----~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------- 165 (225)
.+..+++++|....+...++. .+... .. ......+.+.++++.+++. .++.+..||
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 112233333332222211110 00000 00 1111234566778888773 344445555
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 999999999999999998887752 22333344456666777776666655444
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=7e-22 Score=161.09 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=105.8
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++.. . .
T Consensus 10 ~~~~~~l~~v~~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~-~-------~ 68 (210)
T cd03269 10 FGRVTALDDISFSVEK--GEIFGLLGPNGAGKTTTIRMILGIILP-----------DSGEVLFDGKPLDI-A-------A 68 (210)
T ss_pred ECCEEEEeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCCchhH-H-------H
Confidence 3344578899999999 999999999999999999999999988 89999999876421 0 0
Q ss_pred cCCcchHHHHHHHHhCCCeEEE---E--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFI---V--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~---~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++... . ..........+.+.++++.+++. .++.+..||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 148 (210)
T cd03269 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148 (210)
T ss_pred HccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence 0111111111111100000000 0 00011111234566677777762 333444455
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+...++.++
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999887753 223444556677777777877766665554
No 64
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.84 E-value=1.1e-21 Score=160.62 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=107.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++.. . + ...+..+
T Consensus 19 ~il~~~sl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~-~-~---~~~~~~i 80 (218)
T cd03266 19 QAVDGVSFTVKP--GEVTGLLGPNGAGKTTTLRMLAGLLEP-----------DAGFATVDGFDVVK-E-P---AEARRRL 80 (218)
T ss_pred eeecceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEEccc-C-H---HHHHhhE
Confidence 589999999999 999999999999999999999999988 89999999987642 1 0 0111223
Q ss_pred chHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|....+...++...+ . .........+.+.++++.+++. .++.+..|| +
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333322222111110000 0 0011112234566778888773 344444555 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 99999999999999999887763 223333455566777777766666555543
No 65
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6e-22 Score=174.46 Aligned_cols=170 Identities=18% Similarity=0.126 Sum_probs=115.2
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.... .
T Consensus 12 ~~~~~~vl~~vsl~i~~--Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----------~~G~I~~~g~~i~~~~------~ 72 (369)
T PRK11000 12 AYGDVVISKDINLDIHE--GEFVVFVGPSGCGKSTLLRMIAGLEDI-----------TSGDLFIGEKRMNDVP------P 72 (369)
T ss_pred EeCCeEEEeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCCC------H
Confidence 44445678899999999 999999999999999999999999998 9999999998764211 0
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
....+++++|....+.+.++..++ .. .....+..+.+.++++.+++. .++.+..||
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 122345555544333333321111 00 111122235677889999883 556666677
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+++..+++..+++..+.+
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999888887652 12233344556777777777666655544
No 66
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.84 E-value=5.9e-22 Score=175.70 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=116.1
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++...+++||++.+ |++++|+||||||||||+++|+|+..| .+|.|.++|.++...+..
T Consensus 11 ~~y~~~~vL~~vs~~i~~--Geiv~liGpNGaGKSTLLk~LaGll~p-----------~sG~I~l~G~~i~~~~~~---- 73 (402)
T PRK09536 11 VEFGDTTVLDGVDLSVRE--GSLVGLVGPNGAGKTTLLRAINGTLTP-----------TAGTVLVAGDDVEALSAR---- 73 (402)
T ss_pred EEECCEEEEEeeEEEECC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEEcCcCCHH----
Confidence 345566788999999999 999999999999999999999999988 999999999876432211
Q ss_pred CccCCcchHHHHHHHHhCCCeE---EEEee----CCC--ccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLI---FIVLD----VLK--PLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~---l~~~d----~~~--~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
..+..++++.|....+...++. ..... ... .....+.+.++++.+++. .++.+..||
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1112234433332222111111 00000 000 122345678888888883 455555666
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+.++++.++++.. ..++...|.++.+...++....+..+.++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998887642 23444566677777777776666555443
No 67
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-21 Score=162.98 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=110.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+... ....+..
T Consensus 14 ~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~-~~~~~~~ 79 (241)
T cd03256 14 KKALKDVSLSINP--GEFVALIGPSGAGKSTLLRCLNGLVEP-----------TSGSVLIDGTDINKLKGKA-LRQLRRQ 79 (241)
T ss_pred cEEEecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEeccccCHhH-HHHHHhc
Confidence 5578999999999 999999999999999999999999988 8999999998765322100 0001112
Q ss_pred cchHHHHHHHHhCCCeEEE----E------e---eCCCccccHHHHHHHHHhcccc--cCCCCCccc-------------
Q psy2924 114 KGRGRQVIAVARTCSLIFI----V------L---DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~----~------~---d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------- 165 (225)
+++++|....+...++... . + .........+.+.++++.+++. .++.+..||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 3333332222211111000 0 0 0001112234567788888883 455555666
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+++..+.++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999887752 223344555567777777777777655544
No 68
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.84 E-value=6.4e-22 Score=163.99 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=110.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++...+... ..
T Consensus 10 ~~~~~~l~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~---~~ 73 (236)
T cd03219 10 FGGLVALDDVSFSVRP--GEIHGLIGPNGAGKTTLFNLISGFLRP-----------TSGSVLFDGEDITGLPPHE---IA 73 (236)
T ss_pred ECCEEEecCceEEecC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEECCCCCHHH---HH
Confidence 3344578999999999 999999999999999999999999988 8999999997653221100 00
Q ss_pred cCCcchHHHHHHHHhCCCeEEE------EeeCC---------CccccHHHHHHHHHhcccc--cCCCCCccc--------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFI------VLDVL---------KPLGHKKLIEHELEGFGLR--LNKEPPNID-------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~------~~d~~---------~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------- 165 (225)
+..+++++|....+...++... ..... ......+.+.++++.+++. .++.+..||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred hcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH
Confidence 1123333332222211111000 00000 0112234567788888873 344455555
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++.......+.++
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999887753 223334555567777777777666655543
No 69
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=5e-22 Score=164.40 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++.+ |++++|+||||||||||+++|+|+.+| +.|.|.++|.++...+.... ...+..+
T Consensus 19 ~il~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i 84 (233)
T cd03258 19 TALKDVSLSVPK--GEIFGIIGRSGAGKSTLIRCINGLERP-----------TSGSVLVDGTDLTLLSGKEL-RKARRRI 84 (233)
T ss_pred eeeecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHhhe
Confidence 678999999999 999999999999999999999999988 89999999987643211000 0001122
Q ss_pred chHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|....+...++...+ . .........+.+.++++.+++. .++.+..|| +
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllL 164 (233)
T cd03258 85 GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLC 164 (233)
T ss_pred EEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 3333322222111110000 0 0011111234567778888873 344555565 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 165 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 165 DEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999998887652 223444555567777777777776555544
No 70
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.2e-21 Score=155.11 Aligned_cols=173 Identities=18% Similarity=0.123 Sum_probs=106.0
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
..-+..+.+.+++|++|++ +.++|++||+||||||||+++.++...+ |.. ...|.|.++|+++...+.. .
T Consensus 14 ~~yYg~~~aL~~i~l~i~~--~~VTAlIGPSGcGKST~LR~lNRmndl~---~~~---r~~G~v~~~g~ni~~~~~d--~ 83 (253)
T COG1117 14 NLYYGDKHALKDINLDIPK--NKVTALIGPSGCGKSTLLRCLNRMNDLI---PGA---RVEGEVLLDGKNIYDPKVD--V 83 (253)
T ss_pred eEEECchhhhccCceeccC--CceEEEECCCCcCHHHHHHHHHhhcccC---cCc---eEEEEEEECCeeccCCCCC--H
Confidence 3356678899999999999 9999999999999999999999988752 221 2579999999988643110 0
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhccc------ccCCCC---------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGL------RLNKEP--------------- 161 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l------~~~~~~--------------- 161 (225)
...+..++|++|-+..|+ .....++. .+.......+.++..|+...+ .+++.+
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 112334566666443332 11111110 111111223345555554444 133333
Q ss_pred ------CcccccCCCCCCCHHHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhccccc
Q psy2924 162 ------PNIDNQVPQSELDLDTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 162 ------~~lslDEp~~~LD~~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
..|.+||||++|||.+..+|-+++.++... |+++| ++.+..-..|...++
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTH--nmqQAaRvSD~taFf 221 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH--NMQQAARVSDYTAFF 221 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeC--CHHHHHHHhHhhhhh
Confidence 344499999999999988888888887644 44444 444444444444343
No 71
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.84 E-value=6.9e-22 Score=160.90 Aligned_cols=170 Identities=18% Similarity=0.085 Sum_probs=105.9
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++... ...
T Consensus 10 ~~~~~~l~~~~~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~------~~~ 70 (208)
T cd03268 10 YGKKRVLDDISLHVKK--GEIYGFLGPNGAGKTTTMKIILGLIKP-----------DSGEITFDGKSYQKN------IEA 70 (208)
T ss_pred ECCeEeEeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCCcccch------HHH
Confidence 4445688999999999 999999999999999999999999988 899999999865321 001
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEee-CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLD-VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
+..+++++|....+...++...+.- ........+.+.++++.+++. .++.+..|| +
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1112222221111111110000000 000001123456666776662 333344444 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999988887653 223334456677777777777666655544
No 72
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.3e-21 Score=159.53 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=107.9
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ | +++|+||||||||||+++|+|+.+| ++|.|.++|.++...+ ...
T Consensus 10 ~~~~~~l~~vs~~i~~--g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-----~~~ 70 (211)
T cd03264 10 YGKKRALDGVSLTLGP--G-MYGLLGPNGAGKTTLMRILATLTPP-----------SSGTIRIDGQDVLKQP-----QKL 70 (211)
T ss_pred ECCEEEEcceeEEEcC--C-cEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCCccccch-----HHH
Confidence 3344578999999999 9 9999999999999999999999988 8999999997653211 001
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 11222222221111111110000 00011111234566777777773 344555555
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887632 23333456667777777776666655554
No 73
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-22 Score=176.49 Aligned_cols=172 Identities=17% Similarity=0.144 Sum_probs=111.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.... ...+..
T Consensus 18 ~~il~~vsl~i~~--Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~ 83 (343)
T PRK11153 18 IHALNNVSLHIPA--GEIFGVIGASGAGKSTLIRCINLLERP-----------TSGRVLVDGQDLTALSEKEL-RKARRQ 83 (343)
T ss_pred eEEEEeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHH-HHHhcC
Confidence 4578999999999 999999999999999999999999998 99999999987643221000 001122
Q ss_pred cchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+++++|...++...++...+ . ......+..+.+.++++.+++. .++.+..||
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl 163 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333322222111110000 0 0111112234567788888883 455555666
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. ...++..+|..+.+..+++..+....+.++
T Consensus 164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999988763 223344555567777777776666555543
No 74
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.84 E-value=1.3e-21 Score=158.93 Aligned_cols=145 Identities=17% Similarity=0.103 Sum_probs=94.7
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|+|.++|.++..+.........
T Consensus 8 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 8 FGDKIILDDLNLTIEK--GKMYAIIGESGSGKSTLLNIIGLLEKF-----------DSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred ECCEEEEeceEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccchhhHHHHH
Confidence 3445678999999999 999999999999999999999999988 899999999875422100000001
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 12233333333222222211000 00011112234567788888772 344555565
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
+||||++||+.+++.+.+.+.++
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLEL 180 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 75
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.84 E-value=1e-21 Score=172.43 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=118.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccc--eEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP--GCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~--G~i~~~g~~i~~~d~~g~~ 107 (225)
++.++...+++||++.+ |++++|+|||||||||||++|+|+..| ++ |.|.++|.++.. .+
T Consensus 14 ~~~~~~~l~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~~~G~i~~~g~~~~~--~~--- 75 (362)
T TIGR03258 14 AYGANTVLDDLSLEIEA--GELLALIGKSGCGKTTLLRAIAGFVKA-----------AGLTGRIAIADRDLTH--AP--- 75 (362)
T ss_pred EECCeEEEeeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCCEEEEECCEECCC--CC---
Confidence 44445678999999999 999999999999999999999999998 88 999999987631 11
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
...+.+++++|...++++.++..++ +. .....+..+.+.++++.+++. .++.+..||
T Consensus 76 -~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 76 -PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred -HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1123456666655555444332111 11 111122345678889999883 566676777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+|||+++||+..+..+.+.+.++. ...++..+|..+++..+.+...++..+.+
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i 217 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL 217 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999888887642 22334455667778887777777655544
No 76
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.84 E-value=5.7e-22 Score=174.63 Aligned_cols=178 Identities=17% Similarity=0.130 Sum_probs=116.1
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce----EEEEeCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK----IQLLDLP 104 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~----i~~~d~~ 104 (225)
+.+....+.+++||++++ |++++|+|+||||||||+++|+|++.| ++|.|.++|.+ +...+..
T Consensus 32 ~~~g~~~~l~~vsf~i~~--Gei~~I~G~nGsGKSTLlr~L~Gl~~p-----------~~G~I~idG~~~~~~i~~~~~~ 98 (382)
T TIGR03415 32 DETGLVVGVANASLDIEE--GEICVLMGLSGSGKSSLLRAVNGLNPV-----------SRGSVLVKDGDGSIDVANCDAA 98 (382)
T ss_pred HhhCCEEEEEeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEecccccccCCHH
Confidence 356667789999999999 999999999999999999999999998 99999999863 3221111
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
..+...+..+++++|...++++.++..++. ......+..+.+.++++.+++. .++.+..||
T Consensus 99 ~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 99 TLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred HHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 111111123445444433333222211110 0111222235677888988883 455555666
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+++..+.+....+..+.++
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999888876532 22333445567777777777666665543
No 77
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.84 E-value=5.5e-22 Score=162.87 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=102.5
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+||||||||||+++|+|+..| .+|.|.++|.++...+...........+
T Consensus 19 ~~l~~isl~i~~--G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i 85 (221)
T TIGR02211 19 RVLKGVSLSIGK--GEIVAIVGSSGSGKSTLLHLLGGLDNP-----------TSGEVLFNGQSLSKLSSNERAKLRNKKL 85 (221)
T ss_pred EeEeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcCHhHHHHHHHhcE
Confidence 478899999999 999999999999999999999999988 8999999998764322100000000122
Q ss_pred chHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|....+...++...+ ..........+.+.++++.+++. .++.+..|| +
T Consensus 86 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 165 (221)
T TIGR02211 86 GFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLA 165 (221)
T ss_pred EEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3333322222111110000 00011112234566788888873 445555566 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceE
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCI 217 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
||||++||+.++..+.+.+.++. .+|++ .+|..+.+. .++..+.+..+.
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~tH~~~~~~-~~d~v~~l~~G~ 218 (221)
T TIGR02211 166 DEPTGNLDNNNAKIIFDLMLELNRELNTSFLV-VTHDLELAK-KLDRVLEMKDGQ 218 (221)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHh-hcCEEEEEeCCE
Confidence 99999999999999999887652 33333 333344443 345555544433
No 78
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.84 E-value=8.7e-22 Score=173.46 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=119.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|||||||||||++|+|+..| ++|.|.++|.++... + .
T Consensus 23 ~~~~~~~l~~vsl~i~~--Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~~--~----~ 83 (375)
T PRK09452 23 SFDGKEVISNLDLTINN--GEFLTLLGPSGCGKTTVLRLIAGFETP-----------DSGRIMLDGQDITHV--P----A 83 (375)
T ss_pred EECCeEEEeeeEEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCC--C----H
Confidence 34445578899999999 999999999999999999999999998 999999999876421 1 1
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.++.+++++|...++++.++..++ +. .....+..+.+.++++.+++. +++.+..||
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 234566777766555554442111 11 111122234677888888883 566666777
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+|||+++||+..+..+.+.++.+.. ..++..+|..+++..+.|...++..+.++
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999998888877532 22233444457777777777666555543
No 79
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.84 E-value=1.8e-21 Score=159.80 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=106.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++...+.. ..
T Consensus 9 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~---~~ 72 (222)
T cd03224 9 GYGKSQILFGVSLTVPE--GEIVALLGRNGAGKTTLLKTIMGLLPP-----------RSGSIRFDGRDITGLPPH---ER 72 (222)
T ss_pred ecCCeeEeeeeeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCCCCHH---HH
Confidence 34445678999999999 999999999999999999999999988 899999999765322110 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhc-cc--ccCCCCCccc------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGF-GL--RLNKEPPNID------------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~-~l--~~~~~~~~ls------------------ 165 (225)
.+..+++++|....+...++...+ ..........+.+.++++.+ ++ ..++.+..||
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 112234444432222221111000 00000111122333444444 23 1233333344
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 999999999999999999987763 223444556677777777777666555543
No 80
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=3.3e-21 Score=162.03 Aligned_cols=168 Identities=17% Similarity=0.033 Sum_probs=105.4
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...
T Consensus 20 ~~~~~~~il~~isl~i~~--Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~------- 79 (257)
T PRK11247 20 KRYGERTVLNQLDLHIPA--GQFVAVVGRSGCGKSTLLRLLAGLETP-----------SAGELLAGTAPLAEA------- 79 (257)
T ss_pred EEECCcceeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEHHHh-------
Confidence 345556688999999999 999999999999999999999999988 899999988653110
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+..+++++|....+...++...+...... ...+.+.++++.+++. .++.+..||
T Consensus 80 --~~~i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 80 --REDTRLMFQDARLLPWKKVIDNVGLGLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred --hCceEEEecCccCCCCCcHHHHHHhcccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 01112222211111111110000000000 1123466677777772 344555555
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887652 222333445556666667766666555544
No 81
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.83 E-value=1e-21 Score=162.10 Aligned_cols=169 Identities=20% Similarity=0.151 Sum_probs=103.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
.++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+...........++
T Consensus 25 ~l~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 91 (228)
T PRK10584 25 ILTGVELVVKR--GETIALIGESGSGKSTLLAILAGLDDG-----------SSGEVSLVGQPLHQMDEEARAKLRAKHVG 91 (228)
T ss_pred EEeccEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeeEEECCEEcccCCHHHHHHHHhheEE
Confidence 78999999999 999999999999999999999999988 89999999986643221000000001222
Q ss_pred hHHHHHHHHhCCCeEEE-----EeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 116 RGRQVIAVARTCSLIFI-----VLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~-----~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
+++|....+...++... ...........+.+.++++.+++. .++.+..|| +|
T Consensus 92 ~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD 171 (228)
T PRK10584 92 FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD 171 (228)
T ss_pred EEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22222211111111000 001111122234567778888873 345555566 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 168 VPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
|||++||+.+++.+.+.+.++ +.+|++ .+|..+.+ ..++..+++..+.++
T Consensus 172 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 172 EPTGNLDRQTGDKIADLLFSLNREHGTTLIL-VTHDLQLA-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHH-HhCCEEEEEECCEEE
Confidence 999999999999999988765 233333 33333444 346665555555443
No 82
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.2e-21 Score=161.49 Aligned_cols=177 Identities=15% Similarity=0.068 Sum_probs=110.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCC--C
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI--I 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~--~ 107 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++........ .
T Consensus 11 ~~~~~~il~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 11 FYGAHQALFDITLDCPQ--GETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EECCeeeEeeeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecccccccchhhH
Confidence 34445689999999999 999999999999999999999999988 89999999987531110000 0
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE----ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV----LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~----~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
...+..+++++|....+...++...+ .. .....+..+.+.++++.+++. .++.+..||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 00111233333322222211111000 00 011111234566777887773 444555555
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999887653 223444555567776777766666554443
No 83
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.8e-21 Score=156.84 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=107.5
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++...+. .+..+++++
T Consensus 16 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~ 76 (211)
T cd03298 16 HFDLTFAQ--GEITAIVGPSGSGKSTLLNLIAGFETP-----------QSGRVLINGVDVTAAPP------ADRPVSMLF 76 (211)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCcCCH------hHccEEEEe
Confidence 89999999 999999999999999999999999988 89999999986542110 112234444
Q ss_pred HHHHHHhCCCeE---EEEeeC--CCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCC
Q psy2924 119 QVIAVARTCSLI---FIVLDV--LKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQ 170 (225)
Q Consensus 119 ~~~~~~~~~~~~---l~~~d~--~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~ 170 (225)
|....+...++. .+.... .......+.+.++++.+++. .++.+..|| +||||
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 433222222211 011110 00112234577788888873 445555566 99999
Q ss_pred CCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 171 SELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 171 ~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 9999999999999988753 223344555667777777776666555443
No 84
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.83 E-value=9.3e-22 Score=160.67 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=102.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+... ....+..
T Consensus 14 ~~~l~~~sl~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~-~~~~~~~ 79 (214)
T cd03292 14 TAALDGINISISA--GEFVFLVGPSGAGKSTLLKLIYKEELP-----------TSGTIRVNGQDVSDLRGRA-IPYLRRK 79 (214)
T ss_pred ceeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHH-HHHHHHh
Confidence 4588999999999 999999999999999999999999988 8999999998664321000 0001112
Q ss_pred cchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+++++|....+...++...+ . .........+.+.++++.+++. .++.+..||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333322222221111000 0 0011111234566778888773 344455566
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccc
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999887753 122333344455555555544433
No 85
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=2.1e-21 Score=161.60 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=111.0
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| .+|.|.++|.++...+.. ..
T Consensus 11 ~~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~---~~ 74 (242)
T TIGR03411 11 SFDGFKALNDLSLYVDP--GELRVIIGPNGAGKTTMMDVITGKTRP-----------DEGSVLFGGTDLTGLPEH---QI 74 (242)
T ss_pred EcCCeEEeeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCeecCCCCHH---HH
Confidence 34445578999999999 999999999999999999999999988 899999999765322110 00
Q ss_pred ccCCcchHHHHHHHHhCCCeE------EE----Eee---CCCccccHHHHHHHHHhcccc--cCCCCCccc---------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI------FI----VLD---VLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~------l~----~~d---~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------- 165 (225)
.+..+++++|....+...++. .. +.. ........+.+.++++.+++. .++.+..||
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 111233333322222111110 00 000 001112234567788888873 344555555
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+...++.++
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999887643 23333455567777777766666555443
No 86
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.83 E-value=4.9e-21 Score=148.47 Aligned_cols=168 Identities=21% Similarity=0.174 Sum_probs=120.7
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...++++|.|.+ |+.++||||+|+|||||+-.++|+..| ++|.|.+.|+++..+|..+........+
T Consensus 24 ~IL~~V~L~v~~--Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----------ssGeV~l~G~~L~~ldEd~rA~~R~~~v 90 (228)
T COG4181 24 SILKGVELVVKR--GETVAIVGPSGSGKSTLLAVLAGLDDP-----------SSGEVRLLGQPLHKLDEDARAALRARHV 90 (228)
T ss_pred eEeecceEEecC--CceEEEEcCCCCcHHhHHHHHhcCCCC-----------CCceEEEcCcchhhcCHHHHHHhhccce
Confidence 367799999999 999999999999999999999999999 9999999999988776544333333456
Q ss_pred chHHHHHHHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhccc--ccCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGL--RLNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls---------------------l 166 (225)
++++|...++++.+.+.++. .+....+....+.++|+.+|+ .+.-.|..|| .
T Consensus 91 GfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred eEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEec
Confidence 67777666666665543321 222223345668899999999 4666666777 8
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
||||-+||...-..+.+.+-.++. + |+++|+. .+...|+..+.+..+.+
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~---~LA~Rc~R~~r~~~G~l 224 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP---QLAARCDRQLRLRSGRL 224 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH---HHHHhhhheeeeeccee
Confidence 999999999887777777655532 3 8889986 23333444444444433
No 87
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.2e-21 Score=160.58 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=108.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++...+.. ..+..
T Consensus 14 ~~~l~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~ 76 (242)
T cd03295 14 KKAVNNLNLEIAK--GEFLVLIGPSGSGKTTTMKMINRLIEP-----------TSGEIFIDGEDIREQDPV----ELRRK 76 (242)
T ss_pred ceEeeeeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCeEcCcCChH----Hhhcc
Confidence 4578999999999 999999999999999999999999988 899999999865422211 01112
Q ss_pred cchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc----cCCCCCccc-------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR----LNKEPPNID------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~----~~~~~~~ls------------------- 165 (225)
+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 33333322222111110000 00111112234567778887774 234444565
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887752 223333445566677777776666555543
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=2.3e-21 Score=159.79 Aligned_cols=174 Identities=17% Similarity=0.091 Sum_probs=113.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC-----ccccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY-----SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~-----~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+. .| .+|.|.++|.++...+.
T Consensus 9 ~~~~~~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-----------~~G~i~~~g~~~~~~~~- 74 (227)
T cd03260 9 YYGDKHALKDISLDIPK--GEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-----------DEGEVLLDGKDIYDLDV- 74 (227)
T ss_pred EcCCceeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccccCCC-----------CCeEEEECCEEhhhcch-
Confidence 34455688999999999 9999999999999999999999998 77 89999999987543220
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeE---EEEee--CCCc-cccHHHHHHHHHhcccc--cCCC--CCccc---------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLI---FIVLD--VLKP-LGHKKLIEHELEGFGLR--LNKE--PPNID--------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~~~-~~~~~~~~~~l~~~~l~--~~~~--~~~ls--------- 165 (225)
. ....+..+++++|....+ ..++. .+... .... ....+.+.++++.+++. .++. +..||
T Consensus 75 ~-~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 152 (227)
T cd03260 75 D-VLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCL 152 (227)
T ss_pred H-HHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHH
Confidence 0 001112233333332222 11111 00000 0011 11234567788888883 2333 35677
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 153 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 153 ARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999987643 23344556667777777877777665554
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.83 E-value=2.6e-21 Score=163.62 Aligned_cols=175 Identities=16% Similarity=0.113 Sum_probs=109.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.... ..
T Consensus 16 ~~~~~~il~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~-~~ 81 (269)
T PRK11831 16 TRGNRCIFDNISLTVPR--GKITAIMGPSGIGKTTLLRLIGGQIAP-----------DHGEILFDGENIPAMSRSRL-YT 81 (269)
T ss_pred EECCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccChhhH-HH
Confidence 44445578999999999 999999999999999999999999988 89999999976542221000 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
.+..+++++|....+...++...+ ............+.++++.+++. .++.+..||
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111223333322222211111000 00001111223456678888873 445555566
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.+
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i 222 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI 222 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEE
Confidence 999999999999999998887752 22333344556677777776666554444
No 90
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.3e-21 Score=160.62 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=104.1
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++....
T Consensus 11 ~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-------- 69 (255)
T PRK11248 11 YGGKPALEDINLTLES--GELLVVLGPSGCGKTTLLNLIAGFVPY-----------QHGSITLDGKPVEGPG-------- 69 (255)
T ss_pred eCCeeeEeeeeEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC--------
Confidence 4445578999999999 999999999999999999999999988 8999999987653110
Q ss_pred cCCcchHHHHHHHHhCCCeEE---EE--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIF---IV--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l---~~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
..+++++|....+...++.. .. ..........+.+.++++.+++. .++.+..||
T Consensus 70 -~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 70 -AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred -CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 00112122111111111000 00 00111112234567788888773 344555566
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhcccccc
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+.+.
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999887752 2223334455677777777666654
No 91
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=2.7e-21 Score=160.72 Aligned_cols=174 Identities=14% Similarity=0.030 Sum_probs=109.7
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.....+ ....
T Consensus 11 ~~~~~il~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~--~~~~ 75 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQ--GEVVVIIGPSGSGKSTLLRCINKLEEI-----------TSGDLIVDGLKVNDPKVD--ERLI 75 (240)
T ss_pred ECCeEEeeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCChh--HHHH
Confidence 3445678999999999 999999999999999999999999988 899999999765421100 0001
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence 11223333322222111110000 00111112234567788888873 455555566
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887652 222333445566776777766666555544
No 92
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.7e-21 Score=163.51 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=111.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++.....+......+..+
T Consensus 21 ~~l~~vsl~i~~--Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i 87 (287)
T PRK13641 21 KGLDNISFELEE--GSFVALVGHTGSGKSTLMQHFNALLKP-----------SSGTITIAGYHITPETGNKNLKKLRKKV 87 (287)
T ss_pred cceeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhce
Confidence 479999999999 999999999999999999999999998 9999999998764211000000111223
Q ss_pred chHHHHH--HHHhCCCeEEEEe-----eCCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 115 GRGRQVI--AVARTCSLIFIVL-----DVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 115 ~~~~~~~--~~~~~~~~~l~~~-----d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
++++|.. ..+ ..++...+. .........+.+.++++.+++. .++.+..||
T Consensus 88 g~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~l 166 (287)
T PRK13641 88 SLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEI 166 (287)
T ss_pred EEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3333321 011 111100000 0111122234567888888883 355666677
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 167 LlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 167 LCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998887632 23444556677777778877777555543
No 93
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=3.4e-21 Score=154.73 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=95.9
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.. +... ....+.
T Consensus 4 ~~~il~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~-~~~~-~~~~~~ 68 (190)
T TIGR01166 4 GPEVLKGLNFAAER--GEVLALLGANGAGKSTLLLHLNGLLRP-----------QSGAVLIDGEPLDY-SRKG-LLERRQ 68 (190)
T ss_pred ccceecceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceeEEECCEEccc-cccc-hHHHHh
Confidence 45678999999999 999999999999999999999999988 89999999987642 1100 001112
Q ss_pred CcchHHHHHH-HHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc-------------------
Q psy2924 113 GKGRGRQVIA-VARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------- 165 (225)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------- 165 (225)
.+++++|... .+...++...+ . .........+.+.++++.+++. .++.+..||
T Consensus 69 ~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 148 (190)
T TIGR01166 69 RVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV 148 (190)
T ss_pred hEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2333333221 00001110000 0 0011111234566778888773 445555566
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecC
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDA 198 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~ 198 (225)
+||||++||+..++.+.+.+.++. .+ ++++|+.
T Consensus 149 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 149 LLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 999999999999999998887752 34 4455543
No 94
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=7.9e-21 Score=166.59 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=108.4
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCC-CCCCccCCcchH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG-IIEGAKDGKGRG 117 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g-~~~~~~~~~~~~ 117 (225)
++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.... +. .....+..++++
T Consensus 15 ~isl~i~~--Gei~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~i~~~~-~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 15 DADFTLPG--QGVTAIFGRSGSGKTTLIRLIAGLTRP-----------DEGEIVLNGRTLFDSR-KGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccCc-cccccchhhCCeEEE
Confidence 79999999 999999999999999999999999988 8999999998764211 00 001112234444
Q ss_pred HHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCC
Q psy2924 118 RQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQS 171 (225)
Q Consensus 118 ~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~ 171 (225)
+|....+.+.++...+ ..........+.+.++++.+++. .++.+..|| +||||+
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 4433333222221000 00111112234577888888883 456666676 999999
Q ss_pred CCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 172 ELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 172 ~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||+..++.+.+.+.++.. ..++..+|..+++..+++....+..+.+
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 9999999999988877532 2233355566777777776666655444
No 95
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.3e-21 Score=162.68 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=111.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| +.|.|.++|.++...+...
T Consensus 16 ~~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~---- 78 (265)
T PRK10253 16 GYGKYTVAENLTVEIPD--GHFTAIIGPNGCGKSTLLRTLSRLMTP-----------AHGHVWLDGEHIQHYASKE---- 78 (265)
T ss_pred EECCEEEeeecceEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEEhhhCCHHH----
Confidence 34445688999999999 999999999999999999999999988 8999999998664222110
Q ss_pred ccCCcchHHHHHHHHhCCCeE------EE-Eee--CCCccccHHHHHHHHHhcccc--cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI------FI-VLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~------l~-~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------- 165 (225)
....+++++|....+...++. .. ... ........+.+.++++.+++. .++.+..||
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 011223333322111111110 00 000 001111234567788888873 455555666
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+++.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999887752 223344556667777777776666555443
No 96
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.4e-21 Score=158.21 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=107.8
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.. ...
T Consensus 13 ~~~~~~l~~~sl~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~ 76 (241)
T PRK10895 13 YKGRRVVEDVSLTVNS--GEIVGLLGPNGAGKTTTFYMVVGIVPR-----------DAGNIIIDDEDISLLPLH---ARA 76 (241)
T ss_pred eCCEEEEeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHH
Confidence 3345678999999999 999999999999999999999999988 899999999765321100 001
Q ss_pred cCCcchHHHHHHHHhCCCeE---EE---EeeCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLI---FI---VLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~---l~---~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
+..+++++|....+...++. .. .............+.++++.+++. .++.+..||
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP 156 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence 12233333332222211110 00 000111112234567778887772 344444555
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhc---CCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIH---NADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+.+.+..+ +.++++ .+|..+.+...++..+.+..+.+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii-~sH~~~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI-TDHNVRETLAVCERAYIVSQGHL 215 (241)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE-EEcCHHHHHHhcCEEEEEeCCeE
Confidence 99999999999998887777654 233333 44556677777776666655444
No 97
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.8e-21 Score=170.40 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=117.7
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.+....+++||++.+ |++++|+|||||||||||++|+|+..| ++|.|.++|.++.. .+ .
T Consensus 28 ~~~~~~~l~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~--~~----~ 88 (377)
T PRK11607 28 SFDGQHAVDDVSLTIYK--GEIFALLGASGCGKSTLLRMLAGFEQP-----------TAGQIMLDGVDLSH--VP----P 88 (377)
T ss_pred EECCEEEEeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCC--CC----H
Confidence 44444577899999999 999999999999999999999999998 99999999987642 11 1
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEe---eC--CCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVL---DV--LKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~---d~--~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.++.+++++|...++++.++..++. .. ....+..+.+.++++.+++. .++.+..||
T Consensus 89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 89 YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2345667666655555544422211 11 11122345677889998883 566666777
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+|||+++||+..+..+.+.+.++ +.++ +..+|..+++..+.|...++..+.+
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ti-i~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC-VMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999988877666544 3333 3345556777788777766655544
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=5.4e-21 Score=159.66 Aligned_cols=173 Identities=15% Similarity=0.096 Sum_probs=109.7
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeecc-----ceEEEEcCceEEEEeCCC
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV-----PGCIKYKGAKIQLLDLPG 105 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~-----~G~i~~~g~~i~~~d~~g 105 (225)
+.++...+++||++++ |++++|+|+||||||||+++|+|+..| . +|.|.++|.++.....
T Consensus 11 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~~~~~~G~i~~~g~~~~~~~~-- 75 (247)
T TIGR00972 11 YGEKEALKNINLDIPK--NQVTALIGPSGCGKSTLLRSLNRMNDL-----------VPGVRIEGKVLFDGQDIYDKKI-- 75 (247)
T ss_pred ECCeeeecceeEEECC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CcCCCCceEEEECCEEcccccc--
Confidence 3344578999999999 999999999999999999999999987 6 8999999987642100
Q ss_pred CCCCccCCcchHHHHHHHHhCCCeE---EEEe--eC-CCccccHHHHHHHHHhcccc------cCCCCCccc--------
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTCSLI---FIVL--DV-LKPLGHKKLIEHELEGFGLR------LNKEPPNID-------- 165 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~--d~-~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls-------- 165 (225)
.....+..+++++|....+. .++. .+.. .. .......+.+.++++.+++. .++.+..||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH
Confidence 00011122333333221111 1110 0000 00 01112234566777777763 344455566
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877642 23444556677777777777666555544
No 99
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7e-21 Score=166.81 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=108.6
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++............+..+++++
T Consensus 16 ~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 82 (352)
T PRK11144 16 TVNLTLPA--QGITAIFGRSGAGKTSLINAISGLTRP-----------QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVF 82 (352)
T ss_pred EEEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccchhhCCEEEEc
Confidence 79999999 999999999999999999999999988 89999999987642110000011123445555
Q ss_pred HHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCCCCCH
Q psy2924 119 QVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQSELDL 175 (225)
Q Consensus 119 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~~LD~ 175 (225)
|....+...++...+..... ....+.+.++++.+++. .++.+..|| +||||++||+
T Consensus 83 q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~ 161 (352)
T PRK11144 83 QDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred CCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 54433333222111100001 11234577888888883 456666677 9999999999
Q ss_pred HHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 176 DTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 176 ~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
..++.+++.++++.. ..++..+|..+++..+++....+..+.+
T Consensus 162 ~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKV 207 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 999998888876532 2233344555677777776666655444
No 100
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3e-21 Score=163.39 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=109.2
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.+ . ..
T Consensus 10 ~~~~~~il~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~-~-~~ 74 (271)
T PRK13638 10 RYQDEPVLKGLNLDFSL--SPVTGLVGANGCGKSTLFMNLSGLLRP-----------QKGAVLWQGKPLDYSKRG-L-LA 74 (271)
T ss_pred EcCCcccccceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CccEEEECCEEcccccCC-H-HH
Confidence 44456689999999999 999999999999999999999999988 999999999876421110 0 01
Q ss_pred ccCCcchHHHHHHH-HhCCCe---EEEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 110 AKDGKGRGRQVIAV-ARTCSL---IFIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~---~l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
.+..+++++|.... +....+ +..... .....+..+.+.++++.+++. .++.+..||
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 11223333332210 000000 000000 111112233456777877772 344455565
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+++.+.++. ...++..+|..+.+...++..+....+.+
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999887753 12333344556677677776666655444
No 101
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.82 E-value=6.2e-21 Score=157.80 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=101.5
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchH
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 117 (225)
+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.. .+++
T Consensus 2 ~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---------~~~v 59 (230)
T TIGR01184 2 KGVNLTIQQ--GEFISLIGHSGCGKSTLLNLISGLAQP-----------TSGGVILEGKQITEPGPD---------RMVV 59 (230)
T ss_pred CceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChh---------heEE
Confidence 689999999 999999999999999999999999988 899999999765321110 0111
Q ss_pred HHHHHHHhCCCeEEE-------EeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 118 RQVIAVARTCSLIFI-------VLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 118 ~~~~~~~~~~~~~l~-------~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
+|....+...++... ...........+.+.++++.+++. .++.+..|| +|
T Consensus 60 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 139 (230)
T TIGR01184 60 FQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139 (230)
T ss_pred ecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 111111111110000 000111112234567778888773 344555566 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 168 VPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
|||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.+
T Consensus 140 EPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcE
Confidence 9999999999999999887652 22233344556677777776666655444
No 102
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=1.9e-21 Score=177.67 Aligned_cols=177 Identities=15% Similarity=0.217 Sum_probs=117.1
Q ss_pred hhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 27 ELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 27 ~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
..+.+.++..++++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.
T Consensus 10 l~~~~~~~~~l~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~--- 73 (501)
T PRK10762 10 IDKAFPGVKALSGAALNVYP--GRVMALVGENGAGKSTMMKVLTGIYTR-----------DAGSILYLGKEVTFNGP--- 73 (501)
T ss_pred eEEEeCCeEEeeeeeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCH---
Confidence 33455556689999999999 999999999999999999999999988 89999999976532110
Q ss_pred CCCccCCcchHHHHHHHHhCCCeE---EEEeeC------CCccccHHHHHHHHHhcccc--cCCCCCccc----------
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLI---FIVLDV------LKPLGHKKLIEHELEGFGLR--LNKEPPNID---------- 165 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~---l~~~d~------~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------- 165 (225)
....+..+++++|....+...++. .+.... .......+.+.++++.+++. .++.+..||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 000112345555543333322221 111000 01111234577888998883 455566677
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999988877652 123333556677777777777666555543
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-20 Score=160.87 Aligned_cols=171 Identities=12% Similarity=0.132 Sum_probs=111.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||+|.+ |++++|+|+||||||||+++|+|+..| +.|.|.++|.++.......-....+..+
T Consensus 21 ~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i 87 (286)
T PRK13646 21 QAIHDVNTEFEQ--GKYYAIVGQTGSGKSTLIQNINALLKP-----------TTGTVTVDDITITHKTKDKYIRPVRKRI 87 (286)
T ss_pred CceeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhhe
Confidence 589999999999 999999999999999999999999998 9999999998764211000000112233
Q ss_pred chHHHHH--HHHhCCCe---EEEEe-e-CCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 115 GRGRQVI--AVARTCSL---IFIVL-D-VLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 115 ~~~~~~~--~~~~~~~~---~l~~~-d-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
++++|.. ..+. .++ +.+.. . .....+..+.+.++++.+|+. .++.+..||
T Consensus 88 g~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~i 166 (286)
T PRK13646 88 GMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDI 166 (286)
T ss_pred EEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 4444421 1111 011 00000 0 111122345677888888883 345566677
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+++..+.++
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225 (286)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999988752 223344555567777777777777655554
No 104
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3.4e-21 Score=161.49 Aligned_cols=174 Identities=19% Similarity=0.181 Sum_probs=109.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+....
T Consensus 14 ~~~~~~~l~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~--- 77 (255)
T PRK11300 14 RFGGLLAVNNVNLEVRE--QEIVSLIGPNGAGKTTVFNCLTGFYKP-----------TGGTILLRGQHIEGLPGHQI--- 77 (255)
T ss_pred EECCEEEEEeeeeEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CcceEEECCEECCCCCHHHH---
Confidence 34445688999999999 999999999999999999999999988 89999999976532211000
Q ss_pred ccCCcchHHHHHHHHhCCCeE----------------EEEeeC--CCc--cccHHHHHHHHHhcccc--cCCCCCccc--
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI----------------FIVLDV--LKP--LGHKKLIEHELEGFGLR--LNKEPPNID-- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~----------------l~~~d~--~~~--~~~~~~~~~~l~~~~l~--~~~~~~~ls-- 165 (225)
.+..+++++|....+...++. ....+. ... .+..+.+.++++.+++. .++.+..||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 011112222211111111100 000000 000 11224566778888773 455555566
Q ss_pred -------------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. ...++...|..+.+...++..+....+.++
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999998887652 223333555577777777777666555544
No 105
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.82 E-value=2.5e-20 Score=148.65 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=103.8
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++.+ |++++|+|+||+|||||+++|+|+.+| ++|.|.++|.++...+.. ..
T Consensus 9 ~~~~~~l~~~~~~i~~--G~~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~----~~ 71 (180)
T cd03214 9 YGGRTVLDDLSLSIEA--GEIVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLASLSPK----EL 71 (180)
T ss_pred ECCeeeEeeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCcCCHH----HH
Confidence 3344578999999999 999999999999999999999999988 999999999876432211 11
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA 190 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~ 190 (225)
...+++++|....+.-.+..-......+ ..+++++. +.. .+-..++.+.+||||++||+.+.+.+.+.+.++..
T Consensus 72 ~~~i~~~~q~l~~~gl~~~~~~~~~~LS-~G~~qrl~-lar----al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 72 ARKIAYVPQALELLGLAHLADRPFNELS-GGERQRVL-LAR----ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred HHHHhHHHHHHHHcCCHhHhcCCcccCC-HHHHHHHH-HHH----HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 1234555552222110000000000001 11111111 111 12346778889999999999999999888876532
Q ss_pred ---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 191 ---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 191 ---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
..++..+|..+.+..+++..+.+..+.+.
T Consensus 146 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 23333445567777777777666555443
No 106
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.82 E-value=5.5e-21 Score=160.06 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=109.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe---C---C
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD---L---P 104 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d---~---~ 104 (225)
+.++...+++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+ . |
T Consensus 10 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 10 FGILTVLDGLNFSVAA--GEKVALIGPSGSGKSTILRILMTLEPI-----------DEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred eCCeeEEeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccccc
Confidence 3345678899999999 999999999999999999999999988 8999999998764321 0 0
Q ss_pred --CC-CCCccCCcchHHHHHHHHhCCCeEEEEe------eCCCccccHHHHHHHHHhcccc--cCCCCCccc--------
Q psy2924 105 --GI-IEGAKDGKGRGRQVIAVARTCSLIFIVL------DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------- 165 (225)
Q Consensus 105 --g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~------d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------- 165 (225)
.. ....+..+++++|....+...++...+. .........+.+.++++.+++. .++.+..||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence 00 0001122333333222221111100000 0011112234567778888772 344444555
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999988887652 222333444456666677766666555543
No 107
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-20 Score=160.34 Aligned_cols=171 Identities=14% Similarity=0.145 Sum_probs=107.7
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.....+......+..+
T Consensus 21 ~~l~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i 87 (280)
T PRK13649 21 RALFDVNLTIED--GSYTAFIGHTGSGKSTIMQLLNGLHVP-----------TQGSVRVDDTLITSTSKNKDIKQIRKKV 87 (280)
T ss_pred ceeeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccCHHHHHhhe
Confidence 478999999999 999999999999999999999999988 8999999998764321100000011223
Q ss_pred chHHHHH--HHHhCCCeE---EEEe--eCCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 115 GRGRQVI--AVARTCSLI---FIVL--DVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 115 ~~~~~~~--~~~~~~~~~---l~~~--d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
++++|.. ..+. .++. .+.. ......+..+.+.++++.+++. .++.+..||
T Consensus 88 ~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 166 (280)
T PRK13649 88 GLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI 166 (280)
T ss_pred EEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3333321 1111 1110 0000 0011112233456777777773 345555666
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 167 LVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877532 23333445567777777766666555443
No 108
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=2.1e-20 Score=146.92 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=98.7
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...++++|++++ |++++|+|+||||||||+++|+|+.+| .+|.+.++|.++...+.
T Consensus 10 ~~~~~vl~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~------- 69 (163)
T cd03216 10 FGGVKALDGVSLSVRR--GEVHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVSFASP------- 69 (163)
T ss_pred ECCeEEEeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCcCCH-------
Confidence 3445678999999999 999999999999999999999999988 89999999976542110
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC-
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN- 189 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~- 189 (225)
. ..... . +-.+...+.. +++++.=.. .+-..++.+.+||||++||+..++.+.+.+.++.
T Consensus 70 -------~---~~~~~-~-i~~~~qLS~G--~~qrl~lar-----al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ 130 (163)
T cd03216 70 -------R---DARRA-G-IAMVYQLSVG--ERQMVEIAR-----ALARNARLLILDEPTAALTPAEVERLFKVIRRLRA 130 (163)
T ss_pred -------H---HHHhc-C-eEEEEecCHH--HHHHHHHHH-----HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 0 00111 0 1112222211 122211111 1223677888999999999999999999988763
Q ss_pred -CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 190 -ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 190 -~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
...++..+|..+.+...++....+.++.++
T Consensus 131 ~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 131 QGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 223333455566666777766666555543
No 109
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9.5e-21 Score=161.74 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+........+..+
T Consensus 20 ~~l~~vsl~i~~--Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i 86 (288)
T PRK13643 20 RALFDIDLEVKK--GSYTALIGHTGSGKSTLLQHLNGLLQP-----------TEGKVTVGDIVVSSTSKQKEIKPVRKKV 86 (288)
T ss_pred cceeeeEEEEcC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccccHHHHHhhE
Confidence 478999999999 999999999999999999999999998 9999999998764211000000111223
Q ss_pred chHHHHH--HHHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 115 GRGRQVI--AVARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 115 ~~~~~~~--~~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
++++|.. ..+. .++. .+... .....+....+.++++.+++. .++.+..||
T Consensus 87 g~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i 165 (288)
T PRK13643 87 GVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV 165 (288)
T ss_pred EEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 3333321 1111 0110 00000 011122234567788888872 355556677
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+++.+.++.. ..++..+|..+.+...++..+++..+.++
T Consensus 166 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 166 LVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999888876532 23333455567777777777777665554
No 110
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4.5e-21 Score=161.81 Aligned_cols=173 Identities=13% Similarity=0.029 Sum_probs=109.6
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+..
T Consensus 19 ~~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~---- 81 (265)
T PRK10575 19 FRVPGRTLLHPLSLTFPA--GKVTGLIGHNGSGKSTLLKMLGRHQPP-----------SEGEILLDAQPLESWSSK---- 81 (265)
T ss_pred EEECCEEEEeeeeeEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEehhhCCHH----
Confidence 345555689999999999 999999999999999999999999988 899999999765321110
Q ss_pred CccCCcchHHHHHHHHhCCCe------EEEEeeC---CCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSL------IFIVLDV---LKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~------~l~~~d~---~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
..+..+++++|....+...++ ....... .......+.+.++++.+++. .++.+..||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 001122333322111111111 0000000 00112234567788888873 455555666
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+.+.+.++. ...++..+|..+.+...++..+.+..+.+
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 999999999999998888887652 22333344556677777776666654444
No 111
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5e-21 Score=160.61 Aligned_cols=173 Identities=10% Similarity=0.041 Sum_probs=109.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+...
T Consensus 11 ~~~~~~il~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~---- 73 (255)
T PRK11231 11 GYGTKRILNDLSLSLPT--GKITALIGPNGCGKSTLLKCFARLLTP-----------QSGTVFLGDKPISMLSSRQ---- 73 (255)
T ss_pred EECCEEEEeeeeeEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCcEEEECCEEhHHCCHHH----
Confidence 34445688999999999 999999999999999999999999988 8999999997653211100
Q ss_pred ccCCcchHHHHHHHHhCCCe---EEEE---e---eCCCccccHHHHHHHHHhcccc--cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSL---IFIV---L---DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~---~l~~---~---d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------- 165 (225)
.+..+++++|....+...++ +.+. . .........+.+.++++.+++. .++.+..||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHH
Confidence 01112222222111111110 0000 0 0000112234566778877773 455555566
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 999999999999999999887653 223444555567777777777666555443
No 112
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=1.7e-20 Score=155.81 Aligned_cols=173 Identities=18% Similarity=0.142 Sum_probs=106.6
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.... .
T Consensus 29 ~~~~~~~il~~vs~~i~~--Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~-~---- 90 (236)
T cd03267 29 RKYREVEALKGISFTIEK--GEIVGFIGPNGAGKTTTLKILSGLLQP-----------TSGEVRVAGLVPWKRR-K---- 90 (236)
T ss_pred cccCCeeeeeceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEccccc-h----
Confidence 345556789999999999 999999999999999999999999988 8999999987542110 0
Q ss_pred CccCCcchHH-HHHHHHhCCCeEEE---E--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 109 GAKDGKGRGR-QVIAVARTCSLIFI---V--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~-~~~~~~~~~~~~l~---~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
..+..++++. +....+...++... . .......+..+.+.++++.+++. .++.+..||
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~ 170 (236)
T cd03267 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH 170 (236)
T ss_pred hhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 0011122211 10001100000000 0 00111111223455666766662 344444455
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 171 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 171 EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999988763 223333555566777777776666555543
No 113
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.82 E-value=6.8e-21 Score=160.00 Aligned_cols=177 Identities=16% Similarity=0.074 Sum_probs=111.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC-C---
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP-G--- 105 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~-g--- 105 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...... +
T Consensus 14 ~~~~~~~l~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 14 RYGEHEVLKGVSLQANA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred EECCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccccccccc
Confidence 34455678999999999 999999999999999999999999988 899999999876421100 0
Q ss_pred -----CCCCccCCcchHHHHHHHHhCCCeEEEEe------eCCCccccHHHHHHHHHhcccc--c-CCCCCccc------
Q psy2924 106 -----IIEGAKDGKGRGRQVIAVARTCSLIFIVL------DVLKPLGHKKLIEHELEGFGLR--L-NKEPPNID------ 165 (225)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------d~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~ls------ 165 (225)
-....+..+++++|....+...++...+. .........+.+.++++.+++. . ++.+..||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 00001122333333222221111110000 0011112234567788888883 2 45555666
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999998877532 22333444466666677776666655554
No 114
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=6.1e-21 Score=163.06 Aligned_cols=172 Identities=15% Similarity=0.113 Sum_probs=111.9
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|+++.......-....+..
T Consensus 20 ~~~L~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~ 86 (290)
T PRK13634 20 RRALYDVNVSIPS--GSYVAIIGHTGSGKSTLLQHLNGLLQP-----------TSGTVTIGERVITAGKKNKKLKPLRKK 86 (290)
T ss_pred ccceeeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhh
Confidence 3588999999999 999999999999999999999999988 899999999876421000000011122
Q ss_pred cchHHHHH--HHHhCCCeE---EEEe--eCCCccccHHHHHHHHHhcccc---cCCCCCccc------------------
Q psy2924 114 KGRGRQVI--AVARTCSLI---FIVL--DVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------ 165 (225)
Q Consensus 114 ~~~~~~~~--~~~~~~~~~---l~~~--d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------ 165 (225)
+++++|.. .++ ..++. .+.. ......+..+.+.++++.+++. .++.+..||
T Consensus 87 ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~ 165 (290)
T PRK13634 87 VGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPE 165 (290)
T ss_pred EEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 33333321 111 01110 0000 0111122234677888898883 355666777
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 166 llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 166 VLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887763 223444555567777777777666655554
No 115
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.2e-21 Score=158.77 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=108.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..|. |. .+++|.|.++|.++...+. ..
T Consensus 12 ~~~~~~~l~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~i~~~~~----~~ 79 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPD--NTITALMGPSGSGKSTLLRVFNRLIELY---PE---ARVSGEVYLDGQDIFKMDV----IE 79 (250)
T ss_pred EECCeeeeecceeEEcC--CCEEEEECCCCCCHHHHHHHHhccCCCC---CC---CCCceEEEECCEECCcCCH----HH
Confidence 34445678999999999 9999999999999999999999998630 00 0168999999986532111 01
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE-----eeCC--CccccHHHHHHHHHhcccc------cCCCCCccc-----------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV-----LDVL--KPLGHKKLIEHELEGFGLR------LNKEPPNID----------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~--~~~~~~~~~~~~l~~~~l~------~~~~~~~ls----------- 165 (225)
.+..+++++|....+...++...+ .... ...+..+.+.++++.+++. +++.+..||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 112233333332222111111000 0000 1112234566778877762 344445555
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+....+.+
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeE
Confidence 9999999999999999999887632 2333344456666666676655544443
No 116
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.7e-21 Score=154.06 Aligned_cols=168 Identities=16% Similarity=0.175 Sum_probs=116.4
Q ss_pred HHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 22 AKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
.+++...+.+.++...+++|+++++ |.+.+|||||||||||||.+++++... ++|.|.++|.++...
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~--g~iTs~IGPNGAGKSTLLS~~sRL~~~-----------d~G~i~i~g~~~~~~ 68 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPK--GGITSIIGPNGAGKSTLLSMMSRLLKK-----------DSGEITIDGLELTST 68 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecC--CceeEEECCCCccHHHHHHHHHHhccc-----------cCceEEEeeeecccC
Confidence 4556667788899999999999999 999999999999999999999999998 999999999988754
Q ss_pred eCCCCCCCccCCcchHHHHHHHHhCCCe---EEEE----eeCCCc-------cccHHHHHHHHHhcccc--cCCCCCccc
Q psy2924 102 DLPGIIEGAKDGKGRGRQVIAVARTCSL---IFIV----LDVLKP-------LGHKKLIEHELEGFGLR--LNKEPPNID 165 (225)
Q Consensus 102 d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~l~~----~d~~~~-------~~~~~~~~~~l~~~~l~--~~~~~~~ls 165 (225)
+... + .+.+..++..+- -+.+ ..++.| .++...+.+.++.+++. .++....||
T Consensus 69 ~s~~----------L-Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LS 137 (252)
T COG4604 69 PSKE----------L-AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELS 137 (252)
T ss_pred ChHH----------H-HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcc
Confidence 3211 1 222233322211 1111 112221 34455677777777762 233333444
Q ss_pred ---------------------ccCCCCCCCHHHHHHHHHHhhhc----CCe-EEEeecC-----ChHHHHHHHhccccc
Q psy2924 166 ---------------------NQVPQSELDLDTVKTILSEYRIH----NAD-ITLRYDA-----TSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ---------------------lDEp~~~LD~~~~~~i~~~l~~~----~~~-vi~~~~~-----~~~~~~~~~~~~~~~ 213 (225)
+|||.++||......+++.++.+ +++ |++.|+. ..|.+..+-+|..+.
T Consensus 138 GGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~ 216 (252)
T COG4604 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216 (252)
T ss_pred cchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence 99999999999888888888765 444 7778874 455555566665555
No 117
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.82 E-value=1.6e-20 Score=154.70 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=105.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++++ |++++|+||||||||||+++|+|+..| .+|.|.++|.++...+.. .....+..+
T Consensus 19 ~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~~~~~~~~i 84 (228)
T cd03257 19 KALDDVSFSIKK--GETLGLVGESGSGKSTLARAILGLLKP-----------TSGSIIFDGKDLLKLSRR-LRKIRRKEI 84 (228)
T ss_pred eeecCceeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccchh-hHHHhhccE
Confidence 578999999999 999999999999999999999999988 899999999876432210 000111223
Q ss_pred chHHHHHH--HHhCCCeEEEE---eeCC--Cc-cccHHH-HHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 115 GRGRQVIA--VARTCSLIFIV---LDVL--KP-LGHKKL-IEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 115 ~~~~~~~~--~~~~~~~~l~~---~d~~--~~-~~~~~~-~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
++++|... +....++...+ .... .. ....+. +.++++.+++. .++.+..||
T Consensus 85 ~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 164 (228)
T cd03257 85 QMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP 164 (228)
T ss_pred EEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC
Confidence 33333321 11111110000 0000 00 111112 23566777662 344455555
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 165 KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 999999999999999999887753 223333455566766677776666555543
No 118
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.82 E-value=6.5e-21 Score=158.15 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=104.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.. .
T Consensus 11 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~i~~~~~~-----~ 72 (236)
T TIGR03864 11 YGARRALDDVSFTVRP--GEFVALLGPNGAGKSTLFSLLTRLYVA-----------QEGQISVAGHDLRRAPRA-----A 72 (236)
T ss_pred ECCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccCChh-----h
Confidence 3445578999999999 999999999999999999999999988 899999999766422110 0
Q ss_pred cCCcchHHHHHHHHhCCCeEE---EE--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIF---IV--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l---~~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
...+++++|....+...++.. .. ..........+.+.++++.+++. +++.+..||
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 011222222111111101000 00 00011111234566778888773 445555566
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+.. ++..+.+..+.+
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i 210 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRV 210 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeE
Confidence 999999999999999999887753 1223333444555543 665555554444
No 119
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=9e-21 Score=157.33 Aligned_cols=173 Identities=14% Similarity=0.096 Sum_probs=104.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.. ..
T Consensus 14 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~---~~ 77 (237)
T PRK11614 14 HYGKIQALHEVSLHINQ--GEIVTLIGANGAGKTTLLGTLCGDPRA-----------TSGRIVFDGKDITDWQTA---KI 77 (237)
T ss_pred eeCCceeeeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEecCCCCHH---HH
Confidence 34445688999999999 999999999999999999999999988 899999999765322100 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhc-cc--ccCCCCCccc------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGF-GL--RLNKEPPNID------------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~-~l--~~~~~~~~ls------------------ 165 (225)
.+..+++++|....+...++...+ ..........+.+.++++.+ ++ ..+..+..||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 112233333322222211110000 00001111122233444444 23 1223333344
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. .+|++ .+|..+++...++..+.+..+.++
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEE-EeCcHHHHHhhCCEEEEEeCCEEE
Confidence 999999999999999888887652 33333 456677777777777666555543
No 120
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.81 E-value=7.3e-21 Score=174.24 Aligned_cols=174 Identities=16% Similarity=0.106 Sum_probs=114.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.. ..
T Consensus 20 ~~~~~~il~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~ 83 (510)
T PRK15439 20 QYSGVEVLKGIDFTLHA--GEVHALLGGNGAGKSTLMKIIAGIVPP-----------DSGTLEIGGNPCARLTPA---KA 83 (510)
T ss_pred EeCCceeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHH---HH
Confidence 45555688999999999 999999999999999999999999988 899999999765321100 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeC-CCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDV-LKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
.+..+++++|....+...++...+... .......+.+.++++.+++. .++.+..||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 111233444432222221111000000 01112234567788888883 455555666
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877632 23444666677777777777776665554
No 121
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.1e-20 Score=160.22 Aligned_cols=169 Identities=16% Similarity=0.134 Sum_probs=110.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+. ...+..
T Consensus 18 ~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~----~~~~~~ 80 (274)
T PRK13647 18 TKALKGLSLSIPE--GSKTALLGPNGAGKSTLLLHLNGIYLP-----------QRGRVKVMGREVNAENE----KWVRSK 80 (274)
T ss_pred CeeeeeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCH----HHHHhh
Confidence 4589999999999 999999999999999999999999988 89999999976532110 011122
Q ss_pred cchHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++. .+... ........+.+.++++.+++. .++.+..||
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 444444321 11111110 00000 111112234567788888883 455566666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|..+.+...++..+++..+.++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999877631 23333445566776777776666555543
No 122
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.1e-20 Score=155.61 Aligned_cols=169 Identities=18% Similarity=0.132 Sum_probs=108.3
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.. ..
T Consensus 13 ~~~~~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~----~~ 75 (241)
T PRK14250 13 SFGKEILKDISVKFEG--GAIYTIVGPSGAGKSTLIKLINRLIDP-----------TEGSILIDGVDIKTIDVI----DL 75 (241)
T ss_pred eCCeeeeeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcChH----Hh
Confidence 3345578999999999 999999999999999999999999988 899999999876422211 11
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEe--eCCCccccHHHHHHHHHhcccc---cCCCCCccc--------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVL--DVLKPLGHKKLIEHELEGFGLR---LNKEPPNID-------------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls-------------------- 165 (225)
+..+++++|....+. .++...+. ..... .....+.++++.+++. .++.+..||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 153 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL 153 (241)
T ss_pred hhcEEEEecCchhch-hhHHHHHhcchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 122333333322211 01100000 00000 1233566778888773 345555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+..+ +.+| +..+|..+.+...++..+.+..+.++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti-i~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTV-IWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE-EEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999988888765 2333 33444566666777766666554443
No 123
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.81 E-value=2.2e-20 Score=157.79 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=107.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.... . ...+..+
T Consensus 27 ~~l~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~---~~~~~~i 89 (267)
T PRK15112 27 EAVKPLSFTLRE--GQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGELLIDDHPLHFGD-Y---SYRSQRI 89 (267)
T ss_pred ceeeeeeEEecC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCc-h---hhHhccE
Confidence 478899999999 999999999999999999999999988 8999999997654211 0 0011123
Q ss_pred chHHHHHH--HHhCCCe---EEEEe--e-CCCccccHHHHHHHHHhcccc---cCCCCCccc------------------
Q psy2924 115 GRGRQVIA--VARTCSL---IFIVL--D-VLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------ 165 (225)
Q Consensus 115 ~~~~~~~~--~~~~~~~---~l~~~--d-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------ 165 (225)
++++|... ......+ +.... . ........+.+.++++.+++. .++.+..||
T Consensus 90 ~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 169 (267)
T PRK15112 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPK 169 (267)
T ss_pred EEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCC
Confidence 33333211 0000000 00000 0 011112234567778888872 244445566
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+++..+.++
T Consensus 170 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 170 VIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999888752 223344555567777777777766655544
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.81 E-value=9.4e-21 Score=159.04 Aligned_cols=171 Identities=15% Similarity=0.084 Sum_probs=108.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.. ..
T Consensus 11 ~~~~~il~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~ 73 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPP--GSLTGLLGPNGSGKSTLLRLLAGALRP-----------DAGTVDLAGVDLHGLSRR----AR 73 (256)
T ss_pred ECCEEEEeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEEcccCCHH----HH
Confidence 3445688999999999 999999999999999999999999988 899999999876432210 00
Q ss_pred cCCcchHHHHHHHHhCCCeE------EEEe-e--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLI------FIVL-D--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~------l~~~-d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
+..+++.+|....+...++. .... . ........+.+.++++.+++. .++.+..||
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 11122222221111000100 0000 0 001112234567788888773 455555566
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+.+.+.++. ...++..+|..+.+...++..+....+.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRV 215 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCE
Confidence 999999999999999999888763 22333344556666667776666544443
No 125
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.81 E-value=6.5e-21 Score=157.44 Aligned_cols=172 Identities=20% Similarity=0.149 Sum_probs=103.9
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|+|.++|.++...+.. ...
T Consensus 10 ~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~ 73 (230)
T TIGR03410 10 YGQSHILRGVSLEVPK--GEVTCVLGRNGVGKTTLLKTLMGLLPV-----------KSGSIRLDGEDITKLPPH---ERA 73 (230)
T ss_pred eCCeEEecceeeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHH---HHH
Confidence 4445678999999999 999999999999999999999999988 899999998765322110 000
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcc-c--ccCCCC---------------------Cc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFG-L--RLNKEP---------------------PN 163 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~-l--~~~~~~---------------------~~ 163 (225)
+..+++++|....+...++...+ ..... ....+...++++.++ + ..++.+ +.
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i 152 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALP-RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL 152 (230)
T ss_pred HhCeEEeccCCcccCCCcHHHHHHHHHHhcC-cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11233333322211111110000 00000 001122334444443 2 123333 34
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 164 IDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 164 lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++....+..+.++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV 211 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 44999999999999999999887752 223344555567777777777776555543
No 126
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.7e-20 Score=155.28 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=106.4
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchH
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 117 (225)
.++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+. ....++++
T Consensus 16 ~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~ 76 (232)
T PRK10771 16 MRFDLTVER--GERVAILGPSGAGKSTLLNLIAGFLTP-----------ASGSLTLNGQDHTTTPP------SRRPVSML 76 (232)
T ss_pred ceeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCeecCcCCh------hhccEEEE
Confidence 389999999 999999999999999999999999988 89999999986542211 01223333
Q ss_pred HHHHHHHhCCCeE---EEEeeC-CC-ccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCC
Q psy2924 118 RQVIAVARTCSLI---FIVLDV-LK-PLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVP 169 (225)
Q Consensus 118 ~~~~~~~~~~~~~---l~~~d~-~~-~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp 169 (225)
+|....+...++. .+.... .. .....+.+.++++.+++. .++.+..|| +|||
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3332222221111 011111 01 112234577888888883 455555666 9999
Q ss_pred CCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 170 QSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 170 ~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
|++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 157 ~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999988887652 223333555566666777766666555443
No 127
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.9e-21 Score=173.36 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=114.0
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++..++++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.. .
T Consensus 13 ~~~~~~~il~~vs~~i~~--Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~ 76 (510)
T PRK09700 13 KSFGPVHALKSVNLTVYP--GEIHALLGENGAGKSTLMKVLSGIHEP-----------TKGTITINNINYNKLDHK---L 76 (510)
T ss_pred EEcCCeEEeeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCcCC-----------CccEEEECCEECCCCCHH---H
Confidence 345455678999999999 999999999999999999999999988 899999999765321100 0
Q ss_pred CccCCcchHHHHHHHHhCCCeE---EEEe------eCC---CccccHHHHHHHHHhcccc--cCCCCCccc---------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLI---FIVL------DVL---KPLGHKKLIEHELEGFGLR--LNKEPPNID--------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~---l~~~------d~~---~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------- 165 (225)
..+..+++++|....+...++. .... ... ...+..+.+.++++.+++. .++.+..||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 0112234444432222211110 0000 000 0112234577888888883 455566677
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe
Confidence 9999999999999999988877532 22333455677777777776666555443
No 128
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.81 E-value=2e-20 Score=152.92 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=107.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
...++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++... + ..+..++
T Consensus 13 ~~~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~----~~~~~i~ 73 (213)
T TIGR01277 13 LPMEFDLNVAD--GEIVAIMGPSGAGKSTLLNLIAGFIEP-----------ASGSIKVNDQSHTGL--A----PYQRPVS 73 (213)
T ss_pred cceeeEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEcccC--C----hhccceE
Confidence 35689999999 999999999999999999999999988 899999999865321 1 0112234
Q ss_pred hHHHHHHHHhCCCeEE---EEee-C-CCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 116 RGRQVIAVARTCSLIF---IVLD-V-LKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l---~~~d-~-~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
+++|....+...++.. ..+. . .......+.+.++++.+++. .++.+..|| +|
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4444322222211110 0000 0 00111234566788888873 445555566 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 168 VPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
|||++||+.++..+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK 208 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE
Confidence 9999999999999998887753 223333455566777777777766555554
No 129
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.4e-20 Score=160.66 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=111.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++.+ |++++|+|+||||||||+++|+|+..| .+|.|.++|.++.... ... ...+..+
T Consensus 21 ~~l~~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~-~~~~~~i 85 (287)
T PRK13637 21 KALDNVNIEIED--GEFVGLIGHTGSGKSTLIQHLNGLLKP-----------TSGKIIIDGVDITDKK-VKL-SDIRKKV 85 (287)
T ss_pred ceeeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEECCCcC-ccH-HHHhhce
Confidence 578999999999 999999999999999999999999998 9999999998764211 000 0111233
Q ss_pred chHHHHHH-HHhCCCeE---EEEe--eCCCccccHHHHHHHHHhcccc----cCCCCCccc-------------------
Q psy2924 115 GRGRQVIA-VARTCSLI---FIVL--DVLKPLGHKKLIEHELEGFGLR----LNKEPPNID------------------- 165 (225)
Q Consensus 115 ~~~~~~~~-~~~~~~~~---l~~~--d~~~~~~~~~~~~~~l~~~~l~----~~~~~~~ls------------------- 165 (225)
++++|... .+...++. .+.. ....+.+..+.+.++++.+++. .++.+..||
T Consensus 86 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~l 165 (287)
T PRK13637 86 GLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKI 165 (287)
T ss_pred EEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 44444221 00011110 0000 0111122234577888888883 455566677
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. ...++..+|.++.+...++..+.+..+.++
T Consensus 166 lllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 166 LILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 (287)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999987763 223344555567777777777776555543
No 130
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.81 E-value=1.5e-20 Score=158.30 Aligned_cols=179 Identities=16% Similarity=0.149 Sum_probs=110.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC-CCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL-PGIIE 108 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~-~g~~~ 108 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..|.. +.+|.|.++|.++...+. +.-..
T Consensus 13 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--------~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 13 TFNQHQALHAVDLNIHH--GEMVALLGPSGSGKSTLLRHLSGLITGDK--------SAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EeCCeEEEecceEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCCCC--------CCceEEEECCEecccccccchhHH
Confidence 34455678999999999 99999999999999999999999987610 025999999987643210 00000
Q ss_pred CccCCcchHHHHHHHHhCCCeE---EE-Eee---------CCCccccHHHHHHHHHhcccc--cCCCCCccc--------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLI---FI-VLD---------VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~---l~-~~d---------~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------- 165 (225)
..+..+++++|....+...++. .. ..+ ........+.+.++++.+++. .++.+..||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 0111223333322211111110 00 000 000112234577888888883 455555666
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+++..+.+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999988763 22333345555666677776666655444
No 131
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-20 Score=157.78 Aligned_cols=180 Identities=16% Similarity=0.086 Sum_probs=106.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+|.. ..+++|.|.++|.++...+... ..
T Consensus 13 ~~~~~~~l~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~--~~ 82 (253)
T PRK14267 13 YYGSNHVIKGVDLKIPQ--NGVFALMGPSGCGKSTLLRTFNRLLELNE------EARVEGEVRLFGRNIYSPDVDP--IE 82 (253)
T ss_pred EeCCeeeeecceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccCh--HH
Confidence 34455689999999999 99999999999999999999999987500 0014899999998764111000 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEe-----eCC--CccccHHHHHHHHHhcccc------cCCCCCccc-----------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVL-----DVL--KPLGHKKLIEHELEGFGLR------LNKEPPNID----------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~-----d~~--~~~~~~~~~~~~l~~~~l~------~~~~~~~ls----------- 165 (225)
.+..+++++|....+...++...+. ... ......+.+.++++.+++. .++.+..||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 1112333333222221111100000 000 1111123455666666541 233444455
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999887632 23333455566777777766666554443
No 132
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=2e-20 Score=151.71 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=89.9
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| .+|.|.++|.++.... ...
T Consensus 10 ~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~ 71 (201)
T cd03231 10 RDGRALFSGLSFTLAA--GEALQVTGPNGSGKTTLLRILAGLSPP-----------LAGRVLLNGGPLDFQR-----DSI 71 (201)
T ss_pred eCCceeeccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccc-----HHh
Confidence 3445678999999999 999999999999999999999999988 8999999987653211 011
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
+..++++.|....+...++...+.... .....+.+.++++.+++. .++.+..|| +|
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112233222211111111100000000 001234566677777773 344444455 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhc
Q psy2924 168 VPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~ 188 (225)
|||++||+..++.+.+.+.++
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 133
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.3e-20 Score=160.18 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=108.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||+|++ |++++|+|+||||||||+++|+|+..| .+|.|.++|.++...+.. ..+..+
T Consensus 21 ~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i 83 (279)
T PRK13650 21 YTLNDVSFHVKQ--GEWLSIIGHNGSGKSTTVRLIDGLLEA-----------ESGQIIIDGDLLTEENVW----DIRHKI 83 (279)
T ss_pred eeeeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHH----HHHhhc
Confidence 478999999999 999999999999999999999999998 999999999876421110 111233
Q ss_pred chHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 115 GRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 115 ~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
++++|... .+...++. .+... ...+.+..+.+.++++.+++. .++.+..||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 163 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44444321 11111111 01100 112222345677888988883 455666676
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. .+|++ ..|..+.+ ..++..++...+.++
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tili-vtH~~~~~-~~~dri~~l~~G~i~ 219 (279)
T PRK13650 164 LDEATSMLDPEGRLELIKTIKGIRDDYQMTVIS-ITHDLDEV-ALSDRVLVMKNGQVE 219 (279)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHH-HhCCEEEEEECCEEE
Confidence 999999999999999998887652 33333 33335555 456665555555443
No 134
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.81 E-value=3.7e-19 Score=146.64 Aligned_cols=165 Identities=19% Similarity=0.151 Sum_probs=104.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC-CCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL-PGIIE 108 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~-~g~~~ 108 (225)
.+.++..++++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++..... ..+..
T Consensus 31 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~~~~ 97 (224)
T cd03220 31 EVGEFWALKDVSFEVPR--GERIGLIGRNGAGKSTLLRLLAGIYPP-----------DSGTVTVRGRVSSLLGLGGGFNP 97 (224)
T ss_pred hcCCeEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEchhhcccccCCC
Confidence 55567789999999999 999999999999999999999999988 89999999986542211 11110
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
.. -+.+........ .........+.+.++++.+++. .++.+..||
T Consensus 98 ----~~-tv~enl~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 98 ----EL-TGRENIYLNGRL-------LGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred ----CC-cHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 111111111000 0001111122344555555552 233333444
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999998888876532 23344555567777777766666555543
No 135
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-20 Score=154.95 Aligned_cols=170 Identities=19% Similarity=0.170 Sum_probs=108.4
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..+++++|++.+ |++++|+|+||+|||||+++|+|.++| ..|.|.++|+++...+. .
T Consensus 10 ~~~~~il~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~~~~------~ 70 (232)
T cd03300 10 YGGFVALDGVSLDIKE--GEFFTLLGPSGCGKTTLLRLIAGFETP-----------TSGEILLDGKDITNLPP------H 70 (232)
T ss_pred eCCeeeeccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------h
Confidence 3345689999999999 999999999999999999999999998 89999999976542111 0
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++...+ . ....+....+.+..+++.+++. .++.+..+|
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11233333322222111110000 0 0011112233456677777773 344444455
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++...|..+.+...++..+....+.+.
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999998887653 223333445556677777776666555543
No 136
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.9e-20 Score=149.00 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=96.3
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|++.| ++|+|.++|.++...+.+ ....
T Consensus 10 ~~~~~~l~~i~~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~--~~~~ 74 (178)
T cd03229 10 YGQKTVLNDVSLNIEA--GEIVALLGPSGSGKSTLLRCIAGLEEP-----------DSGSILIDGEDLTDLEDE--LPPL 74 (178)
T ss_pred ECCeEEEeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccchh--HHHH
Confidence 3345578999999999 999999999999999999999999988 899999999876432100 0011
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA 190 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~ 190 (225)
+..+++.+|....+...++...+....+. .+++++.=+. .+-..++.+.+||||++||+.++..+.+.+.++..
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~lS~-G~~qr~~la~-----al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 148 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALGLSG-GQQQRVALAR-----ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeecCCH-HHHHHHHHHH-----HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 12233333322211111111000000111 1111111111 12346788889999999999999999988877531
Q ss_pred ---eEEEeecCChHHHHHHHhcccc
Q psy2924 191 ---DITLRYDATSDDLIDVVEGNRI 212 (225)
Q Consensus 191 ---~vi~~~~~~~~~~~~~~~~~~~ 212 (225)
..++..+|..+.+...++..+.
T Consensus 149 ~~~~tiii~sH~~~~~~~~~d~i~~ 173 (178)
T cd03229 149 QLGITVVLVTHDLDEAARLADRVVV 173 (178)
T ss_pred hcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 2233344445565555554433
No 137
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.81 E-value=6.5e-21 Score=165.60 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=111.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||+|.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+..... ..+..+
T Consensus 35 ~~l~~vsl~i~~--Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~-~~r~~i 100 (331)
T PRK15079 35 KAVDGVTLRLYE--GETLGVVGESGCGKSTFARAIIGLVKA-----------TDGEVAWLGKDLLGMKDDEWR-AVRSDI 100 (331)
T ss_pred EEEeeEEEEEcC--CCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCcEEEECCEECCcCCHHHHH-HHhCce
Confidence 467899999999 999999999999999999999999988 899999999876432211000 012234
Q ss_pred chHHHHHH--HHhCCCeEEEE------ee-CCCccccHHHHHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 115 GRGRQVIA--VARTCSLIFIV------LD-VLKPLGHKKLIEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 115 ~~~~~~~~--~~~~~~~~l~~------~d-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
++++|... +++..++...+ .. .....+..+.+.++++.+++. +++.+..||
T Consensus 101 ~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P 180 (331)
T PRK15079 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEP 180 (331)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 55555431 22112211000 00 111122345667889998882 466777777
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|.++.+..+++...++..+.++
T Consensus 181 ~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 181 KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999988877532 22222344456666666666555444443
No 138
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.6e-20 Score=148.84 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=96.1
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.+.++|.++.... ...+.
T Consensus 12 ~~~~l~~~~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~~~ 73 (173)
T cd03230 12 KKTALDDISLTVEK--GEIYGLLGPNGAGKTTLIKIILGLLKP-----------DSGEIKVLGKDIKKEP-----EEVKR 73 (173)
T ss_pred CeeeeeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccch-----Hhhhc
Confidence 34578999999999 999999999999999999999999988 8999999998654211 11112
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA 190 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~ 190 (225)
.+++++|....+....+...+. .+. ...+++.+ .+...++.+.+||||++||+..+..+.+.+.++..
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~--LS~--------G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 143 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLK--LSG--------GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143 (173)
T ss_pred cEEEEecCCccccCCcHHHHhh--cCH--------HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 2333333221111111000000 110 11122222 13346788889999999999999999999887632
Q ss_pred --eEEEeecCChHHHHHHHhccccc
Q psy2924 191 --DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 191 --~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
..++..+|..+.+...++....+
T Consensus 144 ~g~tiii~th~~~~~~~~~d~i~~l 168 (173)
T cd03230 144 EGKTILLSSHILEEAERLCDRVAIL 168 (173)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEE
Confidence 22333444456665566655444
No 139
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.81 E-value=1.2e-20 Score=155.27 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=102.6
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++....
T Consensus 10 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~~~~~-------- 68 (223)
T TIGR03740 10 FGKQTAVNNISLTVPK--NSVYGLLGPNGAGKSTLLKMITGILRP-----------TSGEIIFDGHPWTRKD-------- 68 (223)
T ss_pred ECCEEEEeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeccccc--------
Confidence 3345578999999999 999999999999999999999999988 8999999987543111
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
...+++.+|....+...++...+ ..... .....+.++++.+++. .++.+..||
T Consensus 69 ~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 69 LHKIGSLIESPPLYENLTARENLKVHTTLLG--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred cccEEEEcCCCCccccCCHHHHHHHHHHHcC--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 00111111111111000000000 00000 0123455666666662 333333444
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 9999999999999999998877632 23333455566777777766666554443
No 140
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.8e-21 Score=166.81 Aligned_cols=176 Identities=11% Similarity=0.059 Sum_probs=110.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+|+||+|.+ |++++|+|+||||||||+++|+|+..+.+ .+++|.|.++|.++...+...........+
T Consensus 21 ~~l~~vsl~i~~--Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~-------~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i 91 (326)
T PRK11022 21 RAVDRISYSVKQ--GEVVGIVGESGSGKSVSSLAIMGLIDYPG-------RVMAEKLEFNGQDLQRISEKERRNLVGAEV 91 (326)
T ss_pred EEEeeeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCCCC-------CCcceEEEECCEECCcCCHHHHHHHhCCCE
Confidence 478999999999 99999999999999999999999986310 126899999998764322111111011234
Q ss_pred chHHHHHH--HHhCCCeE------EEEeeCCCccccHHHHHHHHHhcccc-----cCCCCCccc----------------
Q psy2924 115 GRGRQVIA--VARTCSLI------FIVLDVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID---------------- 165 (225)
Q Consensus 115 ~~~~~~~~--~~~~~~~~------l~~~d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls---------------- 165 (225)
++++|... +.+...+. +.........+..+.+.++++.+++. +++.+..||
T Consensus 92 ~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~ 171 (326)
T PRK11022 92 AMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACR 171 (326)
T ss_pred EEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhC
Confidence 44444321 11111100 00000111223345678889999883 356676777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|.++.+..+.+...++..+.++
T Consensus 172 P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 172 PKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877632 12222334445555666666666555554
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.81 E-value=2e-20 Score=157.92 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=107.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|++.| ++|.|.++|.++...+.... ...+..
T Consensus 24 ~~il~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~ 89 (265)
T TIGR02769 24 APVLTNVSLSIEE--GETVGLLGRSGCGKSTLARLLLGLEKP-----------AQGTVSFRGQDLYQLDRKQR-RAFRRD 89 (265)
T ss_pred eEEeeCceeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEccccCHHHH-HHHhhc
Confidence 4578999999999 999999999999999999999999988 89999999987643221000 001122
Q ss_pred cchHHHHHH--HHhCCCeEEEE---ee---CCCccccHHHHHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 114 KGRGRQVIA--VARTCSLIFIV---LD---VLKPLGHKKLIEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 114 ~~~~~~~~~--~~~~~~~~l~~---~d---~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
+++++|... +....++...+ .. ........+.+.++++.+++. .++.+..||
T Consensus 90 i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p 169 (265)
T TIGR02769 90 VQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP 169 (265)
T ss_pred eEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 333333221 11111110000 00 011112234567778888773 344555565
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+++.+.++. ...++...|..+.+...++..+....+.+
T Consensus 170 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 170 KLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229 (265)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE
Confidence 999999999999988888887652 22333344556666666776666654444
No 142
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.1e-20 Score=153.46 Aligned_cols=166 Identities=16% Similarity=0.036 Sum_probs=103.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc---cccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS---EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~---~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+...++++|++++ |++++|+|+||||||||+++|+|+.. | ++|.|.++|.++...+. ..
T Consensus 20 ~~il~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~-----------~~G~i~i~g~~~~~~~~-----~~ 81 (202)
T cd03233 20 IPILKDFSGVVKP--GEMVLVLGRPGSGCSTLLKALANRTEGNVS-----------VEGDIHYNGIPYKEFAE-----KY 81 (202)
T ss_pred ceeeeeEEEEECC--CcEEEEECCCCCCHHHHHHHhcccCCCCCC-----------cceEEEECCEECccchh-----hh
Confidence 3477899999999 99999999999999999999999988 6 89999999976543210 01
Q ss_pred cCCcchHHHHHHHHhCCCeEE---EE--eeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHH
Q psy2924 111 KDGKGRGRQVIAVARTCSLIF---IV--LDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILS 183 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l---~~--~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~ 183 (225)
+..+++++|....+...++.. +. ....... ........+++.+ .+-..++.+.+||||++||+..++.+.+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~--~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFV--RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhccccch--hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 112222222111111111000 00 0000000 0000111111111 1234667888999999999999999999
Q ss_pred HhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 184 EYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 184 ~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.+.++. ..++++++|..+++...++..+.+.++.++
T Consensus 160 ~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 160 CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 888753 235666667678888888888777776654
No 143
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=6.3e-21 Score=174.52 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=115.2
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
...+.++...+++||++.+ |++++|+||||||||||+++|+|+.+| +|++|.|.++|.++...+. .
T Consensus 12 ~~~~~~~~il~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~---~ 77 (506)
T PRK13549 12 TKTFGGVKALDNVSLKVRA--GEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNI---R 77 (506)
T ss_pred EEEeCCeEeecceeEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCH---H
Confidence 3455556689999999999 999999999999999999999999874 1268999999986532110 0
Q ss_pred CCccCCcchHHHHHHHHhCCCeE---EEEeeC-----CCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLI---FIVLDV-----LKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~---l~~~d~-----~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
...+..+++++|....+...++. .+.... .......+.+.++++.+++. .++.+..||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 00112344444433222222211 111100 01112234577888898883 455555666
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..++...+.++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 9999999999999999998877631 23333556667777777777666555543
No 144
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-20 Score=159.04 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=107.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+. ......
T Consensus 20 ~~~l~~vsl~i~~--Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----------~~G~i~~~g~~i~~~~~----~~~~~~ 82 (279)
T PRK13635 20 TYALKDVSFSVYE--GEWVAIVGHNGSGKSTLAKLLNGLLLP-----------EAGTITVGGMVLSEETV----WDVRRQ 82 (279)
T ss_pred ccceeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcH----HHHhhh
Confidence 3488999999999 999999999999999999999999998 99999999987642110 011123
Q ss_pred cchHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++. .+... .....+..+.+.++++.+++. .++.+..||
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 444444321 11111111 00000 111122234577788888873 455555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+++.+.++.. ..++..+|..+.+. .++..+....+.++
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 9999999999999999999887632 22333334445554 36665555554443
No 145
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.80 E-value=1.8e-20 Score=155.83 Aligned_cols=173 Identities=21% Similarity=0.154 Sum_probs=103.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.++..++++||++++ |++++|+||||||||||+++|+|+. .| ++|.|.++|.++...+...
T Consensus 9 ~~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~-- 73 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKK--GEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----------TSGTILFKGQDLLELEPDE-- 73 (243)
T ss_pred EECCEEEEeccceEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CcceEEECCEecCCCCHHH--
Confidence 34445578999999999 9999999999999999999999995 46 8999999997654221100
Q ss_pred CCccCCcchHHHHHHHHhCCCeE---EEEe------e---CCCccccHHHHHHHHHhcccc---cCCCCC-ccc------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLI---FIVL------D---VLKPLGHKKLIEHELEGFGLR---LNKEPP-NID------ 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~---l~~~------d---~~~~~~~~~~~~~~l~~~~l~---~~~~~~-~ls------ 165 (225)
..+..+++++|....+...++. .... . ........+.+.++++.+++. .++.+. .||
T Consensus 74 -~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 74 -RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred -hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 0011122222222111111100 0000 0 001111134567778888773 244444 377
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHH-HhccccccceEE
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDV-VEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~-~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+... ++....+..+.+
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE
Confidence 9999999999999999999887632 2233344445555555 455554444433
No 146
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.6e-20 Score=158.01 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=109.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++.....+ ....+..
T Consensus 15 ~~~l~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~--~~~~~~~ 79 (275)
T PRK13639 15 TEALKGINFKAEK--GEMVALLGPNGAGKSTLFLHFNGILKP-----------TSGEVLIKGEPIKYDKKS--LLEVRKT 79 (275)
T ss_pred CeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEECccccch--HHHHHhh
Confidence 3478999999999 999999999999999999999999988 899999999876310000 0001122
Q ss_pred cchHHHHHH-HHhCCCeEEEEe----e-CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLIFIVL----D-VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~l~~~----d-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++...+. . .....+..+.+.++++.+++. .++.+..||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 333333211 000111100000 0 011112234567788888873 455555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+++.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887632 23333455567777777877776655544
No 147
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=9.8e-21 Score=153.36 Aligned_cols=151 Identities=17% Similarity=0.085 Sum_probs=92.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.+.++|.++.. +. ..
T Consensus 10 ~~~~~~il~~~s~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~-~~----~~ 71 (200)
T PRK13540 10 DYHDQPLLQQISFHLPA--GGLLHLKGSNGAGKTTLLKLIAGLLNP-----------EKGEILFERQSIKK-DL----CT 71 (200)
T ss_pred EeCCeeEEeeeeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeeEEECCCcccc-CH----HH
Confidence 34456689999999999 999999999999999999999999988 89999999976532 10 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
.+..+++++|....+...++...+............+.++++.+++. .++....|| +
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil 151 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01112222221111111111000000000001122455666666652 233333444 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhc---CCe-EEEeecC
Q psy2924 167 QVPQSELDLDTVKTILSEYRIH---NAD-ITLRYDA 198 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~---~~~-vi~~~~~ 198 (225)
||||++||+.+++.+.+.+.++ +.+ ++++|+.
T Consensus 152 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 152 DEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 9999999999999999988875 234 4455554
No 148
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.1e-20 Score=159.72 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=110.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE-------------
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL------------- 101 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~------------- 101 (225)
..++++||+|.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...
T Consensus 21 ~~l~~vsl~i~~--Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (305)
T PRK13651 21 KALDNVSVEINQ--GEFIAIIGQTGSGKTTFIEHLNALLLP-----------DTGTIEWIFKDEKNKKKTKEKEKVLEKL 87 (305)
T ss_pred cceeeeEEEEeC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEEeceeccccccccccccccccc
Confidence 478999999999 999999999999999999999999998 899999987654211
Q ss_pred eCCCC-------CCCccCCcchHHHHH--HHHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc---cCCCCCcc
Q psy2924 102 DLPGI-------IEGAKDGKGRGRQVI--AVARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR---LNKEPPNI 164 (225)
Q Consensus 102 d~~g~-------~~~~~~~~~~~~~~~--~~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~---~~~~~~~l 164 (225)
+..+. ....+..+++++|.. .++ ..++. .+... .....+..+.+.++++.+++. .++.+..|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 166 (305)
T PRK13651 88 VIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL 166 (305)
T ss_pred ccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 10000 001112234444321 111 01110 00000 111122345678889999883 45666677
Q ss_pred c---------------------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 165 D---------------------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 165 s---------------------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
| +||||++||+..+..+++.+.++.. ..++..+|..+.+...++..+++..+.++
T Consensus 167 SgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~ 244 (305)
T PRK13651 167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE
Confidence 7 9999999999999999998876532 23333455567777777777776555544
No 149
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.8e-20 Score=170.86 Aligned_cols=174 Identities=15% Similarity=0.194 Sum_probs=112.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+. ...
T Consensus 7 ~~~~~~il~~vs~~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~ 70 (491)
T PRK10982 7 SFPGVKALDNVNLKVRP--HSIHALMGENGAGKSTLLKCLFGIYQK-----------DSGSILFQGKEIDFKSS---KEA 70 (491)
T ss_pred EeCCEEeeeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCEECCCCCH---HHH
Confidence 34445678999999999 999999999999999999999999988 89999999986532110 000
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEE---eeCC--CccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIV---LDVL--KPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~---~d~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
.+..+++++|....+...++. .+. .... ......+.+.++++.+++. .++.+..||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 112233433332222211111 000 0010 1111234567788888873 455555666
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887752 123333456667777777777666555543
No 150
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=2e-20 Score=153.18 Aligned_cols=162 Identities=17% Similarity=0.065 Sum_probs=98.4
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++..++++||++.+ |++++|+|+||||||||+++|+|+++| .+|.|.++|.++....
T Consensus 19 ~~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~i~~~~------ 79 (214)
T PRK13543 19 FSRNEEPVFGPLDFHVDA--GEALLVQGDNGAGKTTLLRVLAGLLHV-----------ESGQIQIDGKTATRGD------ 79 (214)
T ss_pred EecCCceeeecceEEECC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCEEccchh------
Confidence 344556689999999999 999999999999999999999999988 8999999997653210
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEe--eCCCccccHHHHHHHHHhcccc--cCCCCCccc-------------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVL--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------- 165 (225)
....+++..|....+...++...+. .........+.+.++++.+++. .++.+..||
T Consensus 80 -~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 80 -RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred -hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0011122222111111100000000 0000011123445666666652 333344444
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhc---CCeEEEeecCChHHHHHHHhccc
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIH---NADITLRYDATSDDLIDVVEGNR 211 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~---~~~vi~~~~~~~~~~~~~~~~~~ 211 (225)
+||||++||+.+++.+.+.+.++ +.+++ ..+|..+.+...++..+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii-i~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAAL-VTTHGAYAAPPVRTRML 208 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE-EEecChhhhhhhcceEE
Confidence 99999999999999998888765 33333 34445566666555433
No 151
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.80 E-value=1.3e-20 Score=155.13 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=99.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--c--eEEEEeCCCCCCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--A--KIQLLDLPGIIEGA 110 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~--~i~~~d~~g~~~~~ 110 (225)
...+++||++.+ |++++|+|+||||||||+++|+|++.| ++|.|.+++ . ++...+........
T Consensus 22 ~il~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~~~g~~~~~~~~~~~~~~~~~ 88 (224)
T TIGR02324 22 PVLKNVSLTVNA--GECVALSGPSGAGKSTLLKSLYANYLP-----------DSGRILVRHEGAWVDLAQASPREVLEVR 88 (224)
T ss_pred EEEecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEEecCCCccchhhcCHHHHHHHH
Confidence 478999999999 999999999999999999999999988 899999973 2 22211100000000
Q ss_pred cCCcchHHHHHHHHhCCCeE---EE-Ee-eCCCccccHHHHHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLI---FI-VL-DVLKPLGHKKLIEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~---l~-~~-d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
...+++++|....+...++. .. .. .........+.+.++++.+++. .++.+..||
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p 168 (224)
T TIGR02324 89 RKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY 168 (224)
T ss_pred hcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 11233333322222111110 00 00 0111112234566777877773 234455566
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhcccccc
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+.....+.+.+.++. .+|++ .+|..+.+...++..+...
T Consensus 169 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~-vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 169 PILLLDEPTASLDAANRQVVVELIAEAKARGAALIG-IFHDEEVRELVADRVMDVT 223 (224)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcceeEecC
Confidence 999999999999999999887753 34333 3333555556666554443
No 152
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.6e-20 Score=158.00 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=105.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.. ...+..
T Consensus 15 ~~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~ 78 (274)
T PRK13644 15 TPALENINLVIKK--GEYIGIIGKNGSGKSTLALHLNGLLRP-----------QKGKVLVSGIDTGDFSKL---QGIRKL 78 (274)
T ss_pred CceeeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEECCccccH---HHHHhh
Confidence 4589999999999 999999999999999999999999988 899999999865322110 001112
Q ss_pred cchHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++. .+... ........+.+.++++.+++. .++.+..||
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 232222211 01111110 00000 111122234567778888883 455555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+++.+.++.. ..++..+|..+.+ ..++..+.+..+.++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIV 214 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEE
Confidence 9999999999999999998876532 2233334445555 446666666554443
No 153
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.6e-20 Score=151.44 Aligned_cols=175 Identities=18% Similarity=0.100 Sum_probs=106.5
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++.. |+||++.+ ++++|+|+||||||||+++|+|+.+| ++|.|.++|.++..........
T Consensus 8 ~~~~~~~~--~vsl~i~~---e~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~ 71 (214)
T cd03297 8 KRLPDFTL--KIDFDLNE---EVTGIFGASGAGKSTLLRCIAGLEKP-----------DGGTIVLNGTVLFDSRKKINLP 71 (214)
T ss_pred EecCCeee--CceEEEcc---eeEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccchhhhh
Confidence 34555444 88888876 69999999999999999999999988 8999999997653211000000
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
..+..+++++|....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred hHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 0111233333322111111110000 00001112234567788888873 345555566
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999887752 223333555567777777776666555543
No 154
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.80 E-value=9.9e-21 Score=153.05 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=93.7
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++..... ..
T Consensus 10 ~~~~~~l~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~-----~~ 71 (198)
T TIGR01189 10 RGERMLFEGLSFTLNA--GEALQVTGPNGIGKTTLLRILAGLLRP-----------DSGEVRWNGTALAEQRD-----EP 71 (198)
T ss_pred ECCEEEEeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccchH-----Hh
Confidence 3445678999999999 999999999999999999999999988 89999999987543210 00
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+..+++.+|....+...++...+ ..... ...+.+.++++.+++. .++.+..||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 149 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG--GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLW 149 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC--CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 11122222211111110000000 00000 1123456677777772 344444555
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhc---CCe-EEEeecC
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIH---NAD-ITLRYDA 198 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~---~~~-vi~~~~~ 198 (225)
+||||++||+.+++.+.+.+.++ +.+ |+++|+.
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 150 ILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 99999999999999999988765 234 4455543
No 155
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=3.3e-20 Score=157.05 Aligned_cols=165 Identities=21% Similarity=0.244 Sum_probs=105.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+||||||||||+++|+|+.+| .+|.|.++|.++...+.. ..+..
T Consensus 22 ~~il~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~----~~~~~ 84 (271)
T PRK13632 22 NNALKNVSFEINE--GEYVAILGHNGSGKSTISKILTGLLKP-----------QSGEIKIDGITISKENLK----EIRKK 84 (271)
T ss_pred ccceeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCcCCHH----HHhcc
Confidence 4588999999999 999999999999999999999999988 899999999876422111 11122
Q ss_pred cchHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++. ..... ........+.+.++++.+++. .++.+..||
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 334333321 11111111 00000 011112234567788888873 455555566
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+++.+.++. .+ ++++|+ .+.+. .++..+....+.+
T Consensus 165 lLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~--~~~~~-~~d~v~~l~~G~i 220 (271)
T PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD--MDEAI-LADKVIVFSEGKL 220 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec--hhHHh-hCCEEEEEECCEE
Confidence 999999999999999999987752 33 333444 34443 4666555555444
No 156
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=3.9e-20 Score=155.55 Aligned_cols=173 Identities=16% Similarity=0.083 Sum_probs=105.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+...
T Consensus 11 ~~~~~~il~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----------~~G~i~~~g~~~~~~~~~~---- 73 (258)
T PRK13548 11 RLGGRTLLDDVSLTLRP--GEVVAILGPNGAGKSTLLRALSGELSP-----------DSGEVRLNGRPLADWSPAE---- 73 (258)
T ss_pred EeCCeeeeeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcccCCHHH----
Confidence 34455689999999999 999999999999999999999999988 8999999997653221100
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEe-e-CCCccccHHHHHHHHHhcccc-----------------------cC---
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVL-D-VLKPLGHKKLIEHELEGFGLR-----------------------LN--- 158 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~-d-~~~~~~~~~~~~~~l~~~~l~-----------------------~~--- 158 (225)
....+++++|....+...++. .... . ........+.+.++++.+++. +.
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 011122222221111111110 0000 0 000111123445556665551 11
Q ss_pred ---CCCCcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 159 ---KEPPNIDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 159 ---~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
..+..+.+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 2456677999999999999999888887653 123333445567777777776666554443
No 157
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=2.5e-20 Score=158.32 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=107.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.. .....
T Consensus 17 ~~~l~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~ 79 (277)
T PRK13652 17 KEALNNINFIAPR--NSRIAVIGPNGAGKSTLFRHFNGILKP-----------TSGSVLIRGEPITKENIR----EVRKF 79 (277)
T ss_pred CceeeEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHH----HHHhh
Confidence 3478999999999 999999999999999999999999988 999999999865321110 00111
Q ss_pred cchHHHHHH-HHhCCCeE---EEEe--eCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLI---FIVL--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~---l~~~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++. .... ....+....+.+.++++.+++. .++.+..||
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 222222110 00000100 0000 0111122234567788888873 455555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++....+..+.++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~ 217 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999988887652 223344555567777777766666554443
No 158
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.8e-20 Score=153.51 Aligned_cols=179 Identities=17% Similarity=0.070 Sum_probs=108.7
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..+. | ..|++|.|.++|.++...+.+ ...
T Consensus 22 ~~~~~~il~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~p~~G~i~~~g~~~~~~~~~--~~~ 91 (260)
T PRK10744 22 YYGKFHALKNINLDIAK--NQVTAFIGPSGCGKSTLLRTFNRMYELY---P---EQRAEGEILLDGENILTPKQD--IAL 91 (260)
T ss_pred EeCCeEEeeceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcceEEEECCEEccccccc--hHH
Confidence 33444578999999999 9999999999999999999999997520 0 012689999999876321100 001
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee---CCCccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD---VLKPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d---~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+. .++. ..... ........+.+.++++.+++. .++.+..||
T Consensus 92 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 1122333333221111 1110 00000 111111224566677777651 344445555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+++.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 171 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 171 IAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234 (260)
T ss_pred HHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887632 23344555567777777777666555554
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.80 E-value=4.8e-20 Score=153.10 Aligned_cols=170 Identities=18% Similarity=0.137 Sum_probs=110.2
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|...| ..|+|.++|.++...+ ..
T Consensus 10 ~~~~~il~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~i~g~~~~~~~------~~ 70 (237)
T TIGR00968 10 FGSFQALDDVNLEVPT--GSLVALLGPSGSGKSTLLRIIAGLEQP-----------DSGRIRLNGQDATRVH------AR 70 (237)
T ss_pred ECCeeeeeeEEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCC------hh
Confidence 3445688999999999 999999999999999999999999988 8999999997654221 11
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
+..+++++|....+...++..++ .. ........+.+.++++.+++. .++.+..+|
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 22344444443333322221000 00 011111234456777777762 344444455
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+|||+++||+.+...+.+.+.+.. ...++..+|..+.+...++....+..+.++
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 999999999999999999887652 223333444566777777776666555543
No 160
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.6e-19 Score=144.42 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=104.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
+..+++-.+++||++.+ |+.++|+||||+||||||+.|+|...| .+|.+.++|.++..+...
T Consensus 10 ~~~Gr~ll~~vsl~~~p--Gev~ailGPNGAGKSTlLk~LsGel~p-----------~~G~v~~~g~~l~~~~~~----- 71 (259)
T COG4559 10 SLAGRRLLDGVSLDLRP--GEVLAILGPNGAGKSTLLKALSGELSP-----------DSGEVTLNGVPLNSWPPE----- 71 (259)
T ss_pred EeecceeccCcceeccC--CcEEEEECCCCccHHHHHHHhhCccCC-----------CCCeEeeCCcChhhCCHH-----
Confidence 55678889999999999 999999999999999999999999998 999999999876432210
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEee--------------CCCccccHHHHHHHHHhcccc--cCCCCCc----------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLD--------------VLKPLGHKKLIEHELEGFGLR--LNKEPPN---------- 163 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d--------------~~~~~~~~~~~~~~l~~~~l~--~~~~~~~---------- 163 (225)
.+ .+...+++..+-+-|.+. +..+.++.+.+..+|...++. ..+....
T Consensus 72 -----~l-A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVq 145 (259)
T COG4559 72 -----EL-ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQ 145 (259)
T ss_pred -----HH-HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHH
Confidence 11 111222222111111110 111223344456667666552 2222223
Q ss_pred -----------------ccccCCCCCCCHHHHHHHHHHhhhcCCe----EEEeecCC-----hHHHHHHHhcccc
Q psy2924 164 -----------------IDNQVPQSELDLDTVKTILSEYRIHNAD----ITLRYDAT-----SDDLIDVVEGNRI 212 (225)
Q Consensus 164 -----------------lslDEp~~~LD~~~~~~i~~~l~~~~~~----vi~~~~~~-----~~~~~~~~~~~~~ 212 (225)
|.+||||++||...+..+++..+++... +.+.||.+ .|+++.+..|...
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 3399999999999999999998887533 66778753 4555555555443
No 161
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=7.1e-20 Score=143.15 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=116.0
Q ss_pred HHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC-
Q psy2924 25 RRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL- 103 (225)
Q Consensus 25 ~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~- 103 (225)
.+.-++|..-...+++|+.... |+.|.|||.+|+||||||+||.-+..| ..|.|.++|+.+.....
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~--GdVisIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred hHHHhhcccchhhcceeeecCC--CCEEEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEeeeCC
Confidence 3344566677788999999999 999999999999999999999999988 99999999999876532
Q ss_pred CCCCCC--------ccCCcchHHHHHHHHhCCCeEEEEeeC------CCccccHHHHHHHHHhcccc--cCCCCCccc--
Q psy2924 104 PGIIEG--------AKDGKGRGRQVIAVARTCSLIFIVLDV------LKPLGHKKLIEHELEGFGLR--LNKEPPNID-- 165 (225)
Q Consensus 104 ~g~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~d~------~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-- 165 (225)
.|-... .+...+|++|...++.+++++.+++.+ ..+.+..+.++.+|..+|+. .+..|..||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 222111 122344555554444444433333221 22344567788999999993 455666676
Q ss_pred -------------------ccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCC
Q psy2924 166 -------------------NQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDAT 199 (225)
Q Consensus 166 -------------------lDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~ 199 (225)
.||||++|||+..-+++..+.++. .+ ++++|+..
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 899999999999988888887764 33 77788753
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.8e-20 Score=153.25 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=106.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++++ |++++|+|+||||||||+++|+|+..|.... +++|.|.++|.++...+.+ ...
T Consensus 16 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~------~~~G~i~~~g~~i~~~~~~--~~~ 85 (254)
T PRK14273 16 FYTDFKALNNINIKILK--NSITALIGPSGCGKSTFLRTLNRMNDLVEGI------KIEGNVIYEGKNIYSNNFD--ILE 85 (254)
T ss_pred EeCCceeecceeeEEcC--CCEEEEECCCCCCHHHHHHHHhccccCCcCC------CCceEEEECCEeccccccc--HHH
Confidence 44455688999999999 9999999999999999999999998751000 1479999999875421100 001
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee--CC-CccccHHHHHHHHHhccc------ccCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD--VL-KPLGHKKLIEHELEGFGL------RLNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~-~~~~~~~~~~~~l~~~~l------~~~~~~~~ls------------ 165 (225)
.+..+++++|....+. .++. .+... .. ......+.+.+.++.+++ ..++.+..||
T Consensus 86 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 86 LRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 1222333333221110 1110 00000 00 111123345566666654 1344444455
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+++.+.++.. ..++..+|..+.+...++..+.+..+.+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999998887642 2233344556666666676655544444
No 163
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.80 E-value=1.9e-20 Score=157.41 Aligned_cols=176 Identities=15% Similarity=0.057 Sum_probs=106.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce-----EEEEeCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-----IQLLDLP 104 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~-----i~~~d~~ 104 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.+ +...+..
T Consensus 15 ~~~~~~il~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 15 LYGPRKGCRDVSFDLYP--GEVLGIVGESGSGKTTLLNALSARLAP-----------DAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred EcCCceeeeeeeEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCccccccccccCCHH
Confidence 34445678999999999 999999999999999999999999988 89999999986 4321100
Q ss_pred CCCCCccCCcchHHHHHH--HHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc---cCCCCCccc--------
Q psy2924 105 GIIEGAKDGKGRGRQVIA--VARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID-------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~--~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls-------- 165 (225)
......+..+++++|... ......+...+ ..........+.+.++++.+++. .++.+..||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 000000111222222210 00000000000 00000111233456777777772 345555666
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+...+.+.+..+. ...++..+|..+.+...++..+.+..+.+
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999988887642 22333345556666666666655555444
No 164
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.5e-20 Score=170.37 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=113.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++++ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+. ...
T Consensus 13 ~~~~~~il~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~---~~~ 76 (501)
T PRK11288 13 TFPGVKALDDISFDCRA--GQVHALMGENGAGKSTLLKILSGNYQP-----------DAGSILIDGQEMRFAST---TAA 76 (501)
T ss_pred EECCEEEEeeeeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCH---HHH
Confidence 44445678999999999 999999999999999999999999988 89999999976532110 001
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEe----eC-CCccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVL----DV-LKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~----d~-~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
.+..+++++|....+...++. .+.. .. ....+..+.+.++++.+++. .++.+..||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 122344444433333222211 0000 00 11112234677888998883 455556677
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999988877532 2333345556677677776666655444
No 165
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.9e-20 Score=167.80 Aligned_cols=169 Identities=18% Similarity=0.283 Sum_probs=110.5
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.... + ....+..+
T Consensus 277 ~~l~~isl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~~~~~~-~--~~~~~~~i 340 (510)
T PRK09700 277 KKVRDISFSVCR--GEILGFAGLVGSGRTELMNCLFGVDKR-----------AGGEIRLNGKDISPRS-P--LDAVKKGM 340 (510)
T ss_pred CcccceeEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCEECCCCC-H--HHHHHCCc
Confidence 468899999999 999999999999999999999999988 8999999997653110 0 00011234
Q ss_pred chHHHHH---HHHhCCCe---EEEEee----------C-CCccccHHHHHHHHHhcccc---cCCCCCccc---------
Q psy2924 115 GRGRQVI---AVARTCSL---IFIVLD----------V-LKPLGHKKLIEHELEGFGLR---LNKEPPNID--------- 165 (225)
Q Consensus 115 ~~~~~~~---~~~~~~~~---~l~~~d----------~-~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls--------- 165 (225)
++++|.. .++.+.++ +..... . .......+.+.++++.+++. .++.+..||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 4444421 11111111 010000 0 01111234567888998883 456666777
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+++.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999999876521 22333455567777777777766655543
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.4e-21 Score=167.43 Aligned_cols=177 Identities=11% Similarity=0.042 Sum_probs=109.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
..+.+++||+|.+ |++++|+|+||||||||+++|+|+..+. ..+++|.|.|+|+++...+........+..
T Consensus 20 ~~~l~~vsl~i~~--Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 90 (330)
T PRK15093 20 VKAVDRVSMTLTE--GEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHN 90 (330)
T ss_pred EEEEeeeEEEECC--CCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCC
Confidence 3478999999999 9999999999999999999999998630 012789999999876432211100001123
Q ss_pred cchHHHHHHHH--hCCCeE---E-----EEeeC---CCccccHHHHHHHHHhcccc-----cCCCCCccc----------
Q psy2924 114 KGRGRQVIAVA--RTCSLI---F-----IVLDV---LKPLGHKKLIEHELEGFGLR-----LNKEPPNID---------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~--~~~~~~---l-----~~~d~---~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls---------- 165 (225)
+++++|..... +..++. . ..... ....+..+.+.++++.+++. +++.+..||
T Consensus 91 i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iA 170 (330)
T PRK15093 91 VSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIA 170 (330)
T ss_pred EEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence 44444432110 000000 0 00000 00112234677889999884 355666777
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|.++.+..+++...++..+.++
T Consensus 171 rAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 171 IALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV 238 (330)
T ss_pred HHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887532 12222344456666666666666555544
No 167
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.8e-20 Score=155.51 Aligned_cols=174 Identities=18% Similarity=0.115 Sum_probs=104.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..|. |. .|++|.|.++|.++...+.. ...
T Consensus 13 ~~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~laGl~~~~---~~---~~~~G~I~~~g~~~~~~~~~--~~~ 82 (258)
T PRK14241 13 YYGSFHAVEDVNLNIEP--RSVTAFIGPSGCGKSTVLRTLNRMHEVI---PG---ARVEGEVLLDGEDLYGPGVD--PVA 82 (258)
T ss_pred EECCEeeeeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCcc---cC---CCcceEEEECCEeccccccC--hHH
Confidence 44445688999999999 9999999999999999999999998630 00 02589999999866321100 001
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---e--eCC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---L--DVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~--d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+...++...+ . ... ......+.+.++++.+++. .++.+..||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 112233333322222111111000 0 000 1111233456667777651 233444555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccc
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+++
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999888877632 23333555567777777765555
No 168
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.2e-20 Score=154.16 Aligned_cols=179 Identities=16% Similarity=0.067 Sum_probs=105.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..+. |. .+++|.|.++|+++...+.. ...
T Consensus 15 ~~~~~~il~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~---~~~~G~i~~~g~~i~~~~~~--~~~ 84 (253)
T PRK14242 15 FYGDFQALHDISLEFEQ--NQVTALIGPSGCGKSTFLRCLNRMNDLI---PG---ARVEGEILLDGENIYDPHVD--VVE 84 (253)
T ss_pred EECCeeeecceeEEEeC--CCEEEEECCCCCCHHHHHHHHHhhcccC---CC---CCCceEEEECCEEccccccC--HHH
Confidence 34445688999999999 9999999999999999999999986410 00 01689999999876421100 000
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---ee--CC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LD--VL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+. .++...+ .. .. ......+.+.++++.+++. .++.+..||
T Consensus 85 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 85 LRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 1112233222211111 0100000 00 00 0111223455666666651 233444555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887632 23333555567777777776666555443
No 169
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.80 E-value=5.3e-20 Score=151.73 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=92.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++...+.. .
T Consensus 16 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~ 78 (225)
T PRK10247 16 LAGDAKILNNISFSLRA--GEFKLITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDISTLKPE----I 78 (225)
T ss_pred eeCCceeeeccEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEcCcCCHH----H
Confidence 34456689999999999 999999999999999999999999888 899999999765432210 0
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------ 165 (225)
.+..+++++|...++.. ++. .............+.+.++++.+++. .++.+..||
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 11122232222111110 110 00000000111233466778888772 345555666
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
+||||++||+..++.+.+.+.++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999988888775
No 170
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.6e-20 Score=162.97 Aligned_cols=169 Identities=16% Similarity=0.139 Sum_probs=110.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+++||+|.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.... ...+..+
T Consensus 29 ~~l~~vsl~i~~--Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----------~~G~i~~~g~~l~~~~~~~~-~~~r~~i 94 (327)
T PRK11308 29 KALDGVSFTLER--GKTLAVVGESGCGKSTLARLLTMIETP-----------TGGELYYQGQDLLKADPEAQ-KLLRQKI 94 (327)
T ss_pred eEEeeeEEEECC--CCEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEEcCcCCHHHH-HHHhCCE
Confidence 578999999999 999999999999999999999999988 89999999987643221000 0111234
Q ss_pred chHHHHHH--HHhCCCeEEE------EeeCCCccccHHHHHHHHHhcccc---cCCCCCccc------------------
Q psy2924 115 GRGRQVIA--VARTCSLIFI------VLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------ 165 (225)
Q Consensus 115 ~~~~~~~~--~~~~~~~~l~------~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------ 165 (225)
++++|... +.+...+... ........+..+.+.++++.+++. +++.+..||
T Consensus 95 ~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~ 174 (327)
T PRK11308 95 QIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174 (327)
T ss_pred EEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC
Confidence 44444321 1111111000 000111222345678899999883 466777777
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||...+..+++.+.++. .+ ++++|+ +..+..+++...++..+.++
T Consensus 175 lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd--l~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 175 VVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD--LSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999887753 23 444444 45555566666666555544
No 171
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.79 E-value=2.4e-20 Score=156.27 Aligned_cols=175 Identities=17% Similarity=0.117 Sum_probs=103.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce-----EEEEeCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-----IQLLDLP 104 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~-----i~~~d~~ 104 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| .+|.|.++|.+ +...+..
T Consensus 12 ~~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 12 SYGGGKGCRDVSFDLYP--GEVLGIVGESGSGKSTLLGCLAGRLAP-----------DHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred EeCCceEeecceEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEecccccccccccCCHH
Confidence 44445678999999999 999999999999999999999999988 89999998865 3211100
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeE--EEE------eeCCCccccHHHHHHHHHhcccc---cCCCCCccc--------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLI--FIV------LDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID-------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~--l~~------~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls-------- 165 (225)
.........+++++|.........+. ..+ ..........+.+.++++.+++. .++.+..||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 00000001122222211000000000 000 00000001124566777777762 334444555
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+++.+.++ +.++++ .+|..+.+...++..+.+..+.+
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~-vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII-VTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999998888764 233333 44556666666666666555444
No 172
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.6e-20 Score=155.45 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=108.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..+. .|++|.|.++|.++...+.. .
T Consensus 11 ~~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~~~~G~i~~~g~~i~~~~~~----~ 76 (246)
T PRK14269 11 FYGKKQALFDINMQIEQ--NKITALIGASGCGKSTFLRCFNRMNDKI--------AKIDGLVEIEGKDVKNQDVV----A 76 (246)
T ss_pred EECCEeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCCC--------CCCceEEEECCEecccCCHH----H
Confidence 44445678999999999 9999999999999999999999987410 02789999999876432211 1
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE-----eeCC--CccccHHHHHHHHHhcccc------cCCCCCccc-----------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV-----LDVL--KPLGHKKLIEHELEGFGLR------LNKEPPNID----------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~--~~~~~~~~~~~~l~~~~l~------~~~~~~~ls----------- 165 (225)
.+..+++++|...++. .++...+ .... ......+.+.++++.+++. .++.+..||
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHH
Confidence 1122333333322211 1110000 0000 0111233466777877772 334444555
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC-CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN-ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 999999999999999999887753 223333445566666777766666555443
No 173
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=2.5e-20 Score=151.42 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=89.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++..... ..
T Consensus 11 ~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~v~~~g~~~~~~~~-----~~ 72 (204)
T PRK13538 11 RDERILFSGLSFTLNA--GELVQIEGPNGAGKTSLLRILAGLARP-----------DAGEVLWQGEPIRRQRD-----EY 72 (204)
T ss_pred ECCEEEEecceEEECC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccchH-----Hh
Confidence 3444578999999999 999999999999999999999999988 89999999976542110 00
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE--eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV--LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+..+++..+....+...++...+ ..........+.+.++++.+++. .++.+..||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 152 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWI 152 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 11111111111001000000000 00000001234566777777773 344444555
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
+||||++||+.+++.+.+.+.++
T Consensus 153 lDEPt~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 153 LDEPFTAIDKQGVARLEALLAQH 175 (204)
T ss_pred EeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999888765
No 174
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=5e-20 Score=156.91 Aligned_cols=171 Identities=17% Similarity=0.131 Sum_probs=110.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++++ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+ .. ....+..
T Consensus 19 ~~~l~~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----------~~G~i~i~g~~~~~~~-~~-~~~~~~~ 83 (283)
T PRK13636 19 THALKGININIKK--GEVTAILGGNGAGKSTLFQNLNGILKP-----------SSGRILFDGKPIDYSR-KG-LMKLRES 83 (283)
T ss_pred CeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CccEEEECCEECCCCc-ch-HHHHHhh
Confidence 4589999999999 999999999999999999999999988 9999999998763110 00 0001122
Q ss_pred cchHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+...++. .+... ........+.+.++++.+++. .++.+..||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 333333210 00001110 00000 111122234567788888883 455555566
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+++.+.++. ...++..+|.++.+...++..+++..+.++
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999998888887653 223444566677777778877777665554
No 175
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.79 E-value=2.3e-20 Score=162.09 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=108.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||+|.+ |++++|+|+||||||||+++|+|+..|.. .++|.|.++|.++...+...........+
T Consensus 30 ~~l~~vsl~i~~--Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--------~~sG~I~~~G~~i~~~~~~~~~~~r~~~i 99 (330)
T PRK09473 30 TAVNDLNFSLRA--GETLGIVGESGSGKSQTAFALMGLLAANG--------RIGGSATFNGREILNLPEKELNKLRAEQI 99 (330)
T ss_pred EEEeeeEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCCCC--------CCCeEEEECCEECCcCCHHHHHHHhcCCE
Confidence 478899999999 99999999999999999999999998600 03899999998765332111110011234
Q ss_pred chHHHHHH--HHhCCCeEEE------EeeCCCccccHHHHHHHHHhcccc-----cCCCCCccc----------------
Q psy2924 115 GRGRQVIA--VARTCSLIFI------VLDVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID---------------- 165 (225)
Q Consensus 115 ~~~~~~~~--~~~~~~~~l~------~~d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls---------------- 165 (225)
++++|... +.+...+... ........+..+.+.++++.+++. +++.+..||
T Consensus 100 ~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~ 179 (330)
T PRK09473 100 SMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCR 179 (330)
T ss_pred EEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 44444431 1111111000 001111122235677888888873 244666777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. .+ ++++|+ ++.+..+.|...++..+.++
T Consensus 180 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd--l~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 180 PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD--LGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC--HHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887653 23 334444 45555666666666555554
No 176
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=5.3e-20 Score=152.61 Aligned_cols=115 Identities=26% Similarity=0.351 Sum_probs=87.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
++.+++||++.+ |+.+||||.||||||||-++|+|+..| ++|.|.|+|+++..++
T Consensus 27 ~avd~Vsf~i~~--ge~~glVGESG~GKSTlgr~i~~L~~p-----------t~G~i~f~g~~i~~~~------------ 81 (268)
T COG4608 27 KAVDGVSFSIKE--GETLGLVGESGCGKSTLGRLILGLEEP-----------TSGEILFEGKDITKLS------------ 81 (268)
T ss_pred EEecceeEEEcC--CCEEEEEecCCCCHHHHHHHHHcCcCC-----------CCceEEEcCcchhhcc------------
Confidence 678999999999 999999999999999999999999999 9999999999866433
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc---ccCC---------------------CCCcccccCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL---RLNK---------------------EPPNIDNQVPQ 170 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l---~~~~---------------------~~~~lslDEp~ 170 (225)
..+..+++.++|+.+|+ .+.+ .|..+.+|||+
T Consensus 82 ------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 82 ------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred ------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 11112223333333333 1233 34444499999
Q ss_pred CCCCHHHHHHHHHHhhhcCC----e-EEEeecC
Q psy2924 171 SELDLDTVKTILSEYRIHNA----D-ITLRYDA 198 (225)
Q Consensus 171 ~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~ 198 (225)
++||...++.+++++.++.. . +.++|+.
T Consensus 138 SaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 138 SALDVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 99999999999999887643 2 7777874
No 177
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=5.2e-20 Score=167.83 Aligned_cols=173 Identities=15% Similarity=0.136 Sum_probs=110.0
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
...+.++...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+..
T Consensus 10 ~~~~~~~~il~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~~~~~~~--- 73 (490)
T PRK10938 10 TFRLSDTKTLQLPSLTLNA--GDSWAFVGANGSGKSALARALAGELPL-----------LSGERQSQFSHITRLSFE--- 73 (490)
T ss_pred EEEcCCeeecccceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCceEEECCcccccCCHH---
Confidence 3355556689999999999 999999999999999999999999988 899999888654321100
Q ss_pred CCccCCcchHHHHHH--HHhCC--CeEEEEeeCC-CccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 108 EGAKDGKGRGRQVIA--VARTC--SLIFIVLDVL-KPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~--~~~~~--~~~l~~~d~~-~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
..+..+++++|... .+... ...+.+.+.. ......+.+.++++.+++. .++.+..||
T Consensus 74 -~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 74 -QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred -HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 00011122222110 00000 0000111110 0012234577888888883 456666777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. .+|++ .+|..+.+...++..+....+.+
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii-~tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL-VLNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE-EeCCHHHHHhhCCEEEEEECCEE
Confidence 999999999999999999987763 23333 44556777777776666655444
No 178
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.1e-19 Score=152.19 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=102.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++... .....
T Consensus 20 ~~il~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~-------~~~~~ 79 (272)
T PRK15056 20 HTALRDASFTVPG--GSIAALVGVNGSGKSTLFKALMGFVRL-----------ASGKISILGQPTRQA-------LQKNL 79 (272)
T ss_pred cEEEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEhHHh-------hccce
Confidence 4578999999999 999999999999999999999999988 899999999765210 00111
Q ss_pred cchHHHHHHHHhC-----CCeEEEE-ee---C--CCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 114 KGRGRQVIAVART-----CSLIFIV-LD---V--LKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~-----~~~~l~~-~d---~--~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
+++++|....... .+.+... .. . .......+.+.++++.+++. .++.+..||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 2333332111000 0001000 00 0 01111234566778888873 455555666
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccc
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+..
T Consensus 160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999998877632 23333455566776766655443
No 179
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.79 E-value=6.2e-20 Score=150.55 Aligned_cols=159 Identities=22% Similarity=0.303 Sum_probs=96.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+||||||||||+++|+|+.+| ..|.|.++|.++...+.. ..+..
T Consensus 17 ~~~l~~i~~~i~~--G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~ 79 (220)
T cd03245 17 IPALDNVSLTIRA--GEKVAIIGRVGSGKSTLLKLLAGLYKP-----------TSGSVLLDGTDIRQLDPA----DLRRN 79 (220)
T ss_pred cccccceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCeEEECCEEhHHCCHH----HHHhh
Confidence 3478999999999 999999999999999999999999988 899999999765321100 00111
Q ss_pred cchHHHHH-----HHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC----------------------------
Q psy2924 114 KGRGRQVI-----AVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN---------------------------- 158 (225)
Q Consensus 114 ~~~~~~~~-----~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~---------------------------- 158 (225)
+++++|.. .+.++..+ .. .....+.+.++++.+++. ++
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~---~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITL---GA----PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred EEEeCCCCccccchHHHHhhc---CC----CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 22222211 11111100 00 000112233444444431 11
Q ss_pred ----CCCCcccccCCCCCCCHHHHHHHHHHhhhcCC--e-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 159 ----KEPPNIDNQVPQSELDLDTVKTILSEYRIHNA--D-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 159 ----~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
..++.+.+||||++||+.++..+.+.+.++.. + |+++|+ .+.+ ..++..+.+.++.++
T Consensus 153 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~--~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR--PSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCC--HHHH-HhCCEEEEEeCCeEe
Confidence 22333339999999999999999999987643 3 333444 4443 566766666555543
No 180
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.3e-20 Score=152.93 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=107.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+.. |. .+++|.|.++|.++...+. ..
T Consensus 13 ~~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~v~~~g~~i~~~~~-~~- 80 (252)
T PRK14256 13 HFGKNHAVKDVSMDFPE--NSVTAIIGPSGCGKSTVLRSINRMHDLVPS--------ARVTGKILLDDTDIYDRGV-DP- 80 (252)
T ss_pred EeCCeeEEecceEEEcC--CCEEEEECCCCCCHHHHHHHHHhcccCCCC--------CCCceEEEECCEEcccccC-Ch-
Confidence 34445688999999999 99999999999999999999999975 30 0147999999987642110 00
Q ss_pred CCccCCcchHHHHHHHHhCCCeE---EEEee--C-CCccccHHHHHHHHHhcccc------cCCCCCccc----------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLI---FIVLD--V-LKPLGHKKLIEHELEGFGLR------LNKEPPNID---------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~---l~~~d--~-~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls---------- 165 (225)
...+..+++++|....+...++. ..... . .......+.+.++++.+++. .++.+..||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 01112233333322111111110 00000 0 01111123456667676652 233344455
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999998887632 23344555577777777777666555543
No 181
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.79 E-value=2.6e-20 Score=157.84 Aligned_cols=173 Identities=16% Similarity=0.091 Sum_probs=104.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeecc--------ceEEEEcCceEEEE
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV--------PGCIKYKGAKIQLL 101 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~--------~G~i~~~g~~i~~~ 101 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| . +|.|.++|.++...
T Consensus 10 ~~~~~~il~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~laG~~~p-----------~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 10 ARRHRAILRDLSLRIEP--GRVTALLGRNGAGKSTLLKALAGDLTG-----------GGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred EECCEeEEecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------cccccccCCceEEEECCEEcccC
Confidence 45556689999999999 999999999999999999999999987 5 89999999876432
Q ss_pred eCCCCCCCccCCcchHHHHHH------HHhCCCeEEEEee---CCCccccHHHHHHHHHhcccc----------------
Q psy2924 102 DLPGIIEGAKDGKGRGRQVIA------VARTCSLIFIVLD---VLKPLGHKKLIEHELEGFGLR---------------- 156 (225)
Q Consensus 102 d~~g~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~d---~~~~~~~~~~~~~~l~~~~l~---------------- 156 (225)
+.... ...+++++|... +.++......... .....+..+.+.++++.+++.
T Consensus 77 ~~~~~----~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 77 DAPRL----ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA 152 (272)
T ss_pred CHHHH----HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 21100 001122222110 1111000000000 000011223455566666551
Q ss_pred -------cC---------CCCCcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceE
Q psy2924 157 -------LN---------KEPPNIDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCI 217 (225)
Q Consensus 157 -------~~---------~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
+- ..+..+.+||||++||+..++.+++.+.++. ...++..+|..+.+...++..+.+..+.
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 11 2456677999999999999999999887652 1223334444666666677666665544
Q ss_pred Ee
Q psy2924 218 YL 219 (225)
Q Consensus 218 ~~ 219 (225)
++
T Consensus 233 i~ 234 (272)
T PRK13547 233 IV 234 (272)
T ss_pred EE
Confidence 43
No 182
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.5e-19 Score=165.68 Aligned_cols=175 Identities=18% Similarity=0.122 Sum_probs=111.5
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce-EEEEeCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-IQLLDLPGII 107 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~-i~~~d~~g~~ 107 (225)
+++.++..++++||+|.+ |+++||+|||||||||||++|+|...| ++|.|.+++.. +..+.....
T Consensus 9 ~~~g~~~~l~~vs~~i~~--Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----------d~G~I~~~~~~~i~~~~q~~~- 74 (638)
T PRK10636 9 IRRGVRVLLDNATATINP--GQKVGLVGKNGCGKSTLLALLKNEISA-----------DGGSYTFPGNWQLAWVNQETP- 74 (638)
T ss_pred EEeCCceeecCcEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCC-
Confidence 456677789999999999 999999999999999999999999888 89999998753 333221100
Q ss_pred CCccCCcchHHHHHHHHhCCC----------eEEEE------eeCCCccccHHHHHHHHHhcccc---cCCCCCccc---
Q psy2924 108 EGAKDGKGRGRQVIAVARTCS----------LIFIV------LDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID--- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~----------~~l~~------~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls--- 165 (225)
......++++.+....+.... ....+ .+..........+.++++.+|+. .++++..||
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGe 154 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGW 154 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHH
Confidence 111122333333221111000 00000 00000112234677888888883 355555666
Q ss_pred ------------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ------------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ------------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+.+.+..+...|++ .+|..+.+...++..+....+.+
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tvii-vsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLIL-ISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEE-EeCCHHHHHHhcCEEEEEeCCEE
Confidence 99999999999999999999887665443 33445555566666655555444
No 183
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.5e-19 Score=153.84 Aligned_cols=167 Identities=13% Similarity=0.117 Sum_probs=107.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++..... ....+..
T Consensus 23 ~~vl~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~---~~~~~~~ 86 (280)
T PRK13633 23 KLALDDVNLEVKK--GEFLVILGRNGSGKSTIAKHMNALLIP-----------SEGKVYVDGLDTSDEEN---LWDIRNK 86 (280)
T ss_pred cceeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccc---HHHHhhh
Confidence 4589999999999 999999999999999999999999998 99999999987642110 0111223
Q ss_pred cchHHHHHH-HHhCCCe---EEEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIA-VARTCSL---IFIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~-~~~~~~~---~l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|... .+....+ +.+... ...+....+.+.++++.+++. .++.+..||
T Consensus 87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 166 (280)
T PRK13633 87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166 (280)
T ss_pred eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 344444321 0111111 011100 111122235577888888883 455666676
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+.+.+.++. .+|++ .+|..+.+.. ++..+++..+.+
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~till-vtH~~~~~~~-~d~v~~l~~G~i 222 (280)
T PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIIL-ITHYMEEAVE-ADRIIVMDSGKV 222 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EecChHHHhc-CCEEEEEECCEE
Confidence 999999999999999999988762 23333 3444445443 666655555444
No 184
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.1e-19 Score=143.73 Aligned_cols=146 Identities=20% Similarity=0.221 Sum_probs=89.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||+|||||+++|+|+.+| .+|.+.++|.++...+.. ..+..+
T Consensus 16 ~~l~~i~~~i~~--G~~~~l~G~nGsGKstLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i 78 (171)
T cd03228 16 PVLKDVSLTIKP--GEKVAIVGPSGSGKSTLLKLLLRLYDP-----------TSGEILIDGVDLRDLDLE----SLRKNI 78 (171)
T ss_pred ccccceEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhhhcCHH----HHHhhE
Confidence 578999999999 999999999999999999999999988 899999999765422100 001112
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC-e
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA-D 191 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~-~ 191 (225)
++.+|....+. .++ .+.. ......+++.+ .+...+..+.+||||++||+.++..+.+.+.++.. .
T Consensus 79 ~~~~~~~~~~~-~t~----~e~l-------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~ 146 (171)
T cd03228 79 AYVPQDPFLFS-GTI----RENI-------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGK 146 (171)
T ss_pred EEEcCCchhcc-chH----HHHh-------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCC
Confidence 22222111111 000 0000 00011122222 12346778889999999999999999998877643 2
Q ss_pred EEEeecCChHHHHHHHhcc
Q psy2924 192 ITLRYDATSDDLIDVVEGN 210 (225)
Q Consensus 192 vi~~~~~~~~~~~~~~~~~ 210 (225)
.++..+|..+.+.. ++..
T Consensus 147 tii~~sh~~~~~~~-~d~~ 164 (171)
T cd03228 147 TVIVIAHRLSTIRD-ADRI 164 (171)
T ss_pred EEEEEecCHHHHHh-CCEE
Confidence 22223444455433 4433
No 185
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.2e-19 Score=153.46 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=102.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.. ..+..+
T Consensus 23 ~~l~~isl~i~~--Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i 85 (269)
T PRK13648 23 FTLKDVSFNIPK--GQWTSIVGHNGSGKSTIAKLMIGIEKV-----------KSGEIFYNNQAITDDNFE----KLRKHI 85 (269)
T ss_pred cceeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHH----HHHhhe
Confidence 378999999999 999999999999999999999999988 899999999865321110 111123
Q ss_pred chHHHHHH-HHhCCCe---EEEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 115 GRGRQVIA-VARTCSL---IFIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 115 ~~~~~~~~-~~~~~~~---~l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
++++|... .+....+ +.+... ........+.+.++++.+++. .++.+..||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333221 1111110 000000 011112234566778888773 444555566
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+.+.+.++. .+|++ .+|..+.+.. ++..+++..+.+
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiii-vtH~~~~~~~-~d~i~~l~~G~i 220 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIIS-ITHDLSEAME-ADHVIVMNKGTV 220 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCchHHhc-CCEEEEEECCEE
Confidence 999999999999999988887652 33333 3333455543 565555544444
No 186
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.7e-20 Score=153.40 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=105.8
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..|.. | .+++|+|.++|.++...+.+ ...
T Consensus 21 ~~~~~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~--~----~~~~G~i~~~g~~i~~~~~~--~~~ 90 (258)
T PRK14268 21 WYGEKQALKNVSMQIPK--NSVTALIGPSGCGKSTFIRCLNRMNDLIK--N----CRIEGKVSIEGEDIYEPDVD--VVE 90 (258)
T ss_pred EeCCeeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCccc--C----CCcceEEEECCEEcccccch--HHH
Confidence 44455678999999999 99999999999999999999999986300 0 01689999999876421110 000
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
.+..+++++|....+. .++...+ . .........+.+.++++.+++. +++.+..||
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 1112333322211111 0100000 0 0001111123455666666551 233444455
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+++..+.++
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI 232 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877632 23333455567777777766666555443
No 187
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.78 E-value=1.3e-19 Score=151.87 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=96.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeC-CCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDL-PGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~-~g~~ 107 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| .+|.|.+++. .+.++.. +.+.
T Consensus 13 ~~~~~~vl~~vs~~i~~--Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~~~~~i~~v~q~~~~~ 79 (251)
T PRK09544 13 SFGQRRVLSDVSLELKP--GKILTLLGPNGAGKSTLVRVVLGLVAP-----------DEGVIKRNGKLRIGYVPQKLYLD 79 (251)
T ss_pred EECCceEEEeEEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCccCEEEeccccccc
Confidence 34445678999999999 999999999999999999999999988 8999998874 2333221 1111
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
.... . -+.+. +. ... ....+.+.++++.+++. .++.+..||
T Consensus 80 ~~l~--~-~~~~~---~~--------~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 80 TTLP--L-TVNRF---LR--------LRP---GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccC--h-hHHHH---Hh--------ccc---cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0000 0 00010 00 000 00122345556565552 233333444
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhcccccc
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+.++..+++.+.++ +.+|+ ..+|..+.+...++..+.+.
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tii-ivsH~~~~i~~~~d~i~~l~ 195 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVL-MVSHDLHLVMAKTDEVLCLN 195 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEE-EEecCHHHHHHhCCEEEEEC
Confidence 99999999999999988888765 23333 34455666666666655553
No 188
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-19 Score=156.72 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=108.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE----e---CC---
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL----D---LP--- 104 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~----d---~~--- 104 (225)
...+++||++++ |++++|+|+||||||||+++|+|++.| ++|.|.++|.++... + .+
T Consensus 40 ~~L~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~~~~~~ 106 (320)
T PRK13631 40 VALNNISYTFEK--NKIYFIIGNSGSGKSTLVTHFNGLIKS-----------KYGTIQVGDIYIGDKKNNHELITNPYSK 106 (320)
T ss_pred cceeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCEEccccccccccccccccc
Confidence 489999999999 999999999999999999999999998 999999999765321 0 00
Q ss_pred --CCCCCccCCcchHHHHH--HHHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc---cCCCCCccc-------
Q psy2924 105 --GIIEGAKDGKGRGRQVI--AVARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR---LNKEPPNID------- 165 (225)
Q Consensus 105 --g~~~~~~~~~~~~~~~~--~~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------- 165 (225)
......+..+++++|.. ..+. .++. .+... .....+..+.+.++++.+++. .++.+..||
T Consensus 107 ~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRv 185 (320)
T PRK13631 107 KIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRV 185 (320)
T ss_pred ccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHH
Confidence 00000112233333321 1111 0110 00000 011122234567788888883 455566677
Q ss_pred --------------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+++.+.++. ...++..+|.++.+...++..+++..+.++
T Consensus 186 aiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999887652 222333445566676777776666655554
No 189
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8e-20 Score=155.57 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=106.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccc---eEEEEcCceEEEEeCCCCCCCcc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP---GCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~---G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
...+++||++.+ |++++|+|+||||||||+++|+|+..| .+ |.|.++|.++...+.. ..+
T Consensus 21 ~~l~~v~l~i~~--Ge~~~I~G~nGaGKSTLl~~l~G~~~p-----------~~g~~G~i~i~g~~~~~~~~~----~~~ 83 (282)
T PRK13640 21 PALNDISFSIPR--GSWTALIGHNGSGKSTISKLINGLLLP-----------DDNPNSKITVDGITLTAKTVW----DIR 83 (282)
T ss_pred cceeeEEEEEcC--CCEEEEECCCCCcHHHHHHHHhcccCC-----------CCCCCcEEEECCEECCcCCHH----HHH
Confidence 479999999999 999999999999999999999999987 66 8999999865321100 111
Q ss_pred CCcchHHHHHH-HHhCCCeE---EEEee--CCCccccHHHHHHHHHhcccc--cCCCCCccc------------------
Q psy2924 112 DGKGRGRQVIA-VARTCSLI---FIVLD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------ 165 (225)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~---l~~~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------ 165 (225)
..+++++|... .+...++. .+... .....+..+.+.++++.+++. .++.+..||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 22333333221 11111111 00000 111122234577788888883 455565666
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++. .+|++ .+|..+.+ ..++..+++..+.++
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli-~tH~~~~~-~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS-ITHDIDEA-NMADQVLVLDDGKLL 222 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHH-HhCCEEEEEECCEEE
Confidence 999999999999999999887753 23333 33444555 356766666555554
No 190
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.2e-19 Score=151.68 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=108.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+..+..++++||++.+ |++++|+|+||||||||+++|+|+..|... .+++|+|.++|.++.....+ ...
T Consensus 29 ~~~~~~il~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~--~~~ 98 (267)
T PRK14237 29 YYGKKEAIKGIDMQFEK--NKITALIGPSGSGKSTYLRSLNRMNDTIDI------ARVTGQILYRGIDINRKEIN--VYE 98 (267)
T ss_pred EECCeeeEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCccCC------CCcceEEEECCEEcccccCC--hHH
Confidence 34445688999999999 999999999999999999999999863000 02789999999876321100 001
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee--CC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD--VL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+. .++. ..... .. ......+.+.++++.+++. .++.+..||
T Consensus 99 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 99 MRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 1222333333221111 0110 00000 00 1111223456667776652 344445555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++...+...+.++
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 178 IAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999988887632 23333445567777777776666555443
No 191
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.7e-19 Score=154.11 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=104.9
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE-EeCCCCCCCccCCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL-LDLPGIIEGAKDGK 114 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~ 114 (225)
..+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.. ..........+..+
T Consensus 26 il~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~i 92 (289)
T PRK13645 26 ALNNTSLTFKK--NKVTCVIGTTGSGKSTMIQLTNGLIIS-----------ETGQTIVGDYAIPANLKKIKEVKRLRKEI 92 (289)
T ss_pred eeeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEccccccccccHHHHhccE
Confidence 78999999999 999999999999999999999999988 89999999976531 00000000011122
Q ss_pred chHHHHH-------HHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 115 GRGRQVI-------AVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 115 ~~~~~~~-------~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
+++.|.. .+.++..+.. ...........+.+.++++.+++. .++.+..||
T Consensus 93 ~~v~q~~~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 171 (289)
T PRK13645 93 GLVFQFPEYQLFQETIEKDIAFGP-VNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNT 171 (289)
T ss_pred EEEEeCcchhhhhhHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 2222211 1111110000 000111111223456677777772 344555666
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 172 LlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887652 223333455566777777776666555543
No 192
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=4.3e-20 Score=150.38 Aligned_cols=137 Identities=23% Similarity=0.242 Sum_probs=86.7
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.. +.
T Consensus 11 ~~~~~~~l~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---~~---- 70 (207)
T PRK13539 11 VRGGRVLFSGLSFTLAA--GEALVLTGPNGSGKTTLLRLIAGLLPP-----------AAGTIKLDGGDIDD---PD---- 70 (207)
T ss_pred EECCeEEEeceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeCcc---hh----
Confidence 34455678999999999 999999999999999999999999988 89999999876431 10
Q ss_pred ccCCcchHHHHHHHHhCCCeEE---EEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc-------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIF---IVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l---~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------- 165 (225)
.+..++++.+....+...++.. ....... ...+.+.++++.+++. .++.+..||
T Consensus 71 ~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFLG--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 0111111111000000000000 0000000 1123456677777662 233444454
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
+||||++||+..++.+.+.+.++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~ 173 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAH 173 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999888765
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.3e-19 Score=164.20 Aligned_cols=170 Identities=12% Similarity=0.158 Sum_probs=111.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
+...+++||++++ |++++|+|+||||||||+++|+|+.. | ++|.|.++|.++.... + ....+.
T Consensus 275 ~~vl~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-----------~~G~i~~~g~~~~~~~-~--~~~~~~ 338 (506)
T PRK13549 275 IKRVDDVSFSLRR--GEILGIAGLVGAGRTELVQCLFGAYPGR-----------WEGEIFIDGKPVKIRN-P--QQAIAQ 338 (506)
T ss_pred cccccceeeEEcC--CcEEEEeCCCCCCHHHHHHHHhCCCCCC-----------CCcEEEECCEECCCCC-H--HHHHHC
Confidence 3478899999999 99999999999999999999999987 5 7999999997653211 0 001122
Q ss_pred CcchHHHHHH---HHhCCCeE---EEE-eeCC------CccccHHHHHHHHHhcccc---cCCCCCccc-----------
Q psy2924 113 GKGRGRQVIA---VARTCSLI---FIV-LDVL------KPLGHKKLIEHELEGFGLR---LNKEPPNID----------- 165 (225)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~~---l~~-~d~~------~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------- 165 (225)
.+++++|... .+...++. ... .... ......+.+.++++.+++. .++.+..||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 3444444321 11111211 000 0000 1112234577889999883 455666777
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+..+. ...++..+|..+.+...++..+.+..+.++
T Consensus 419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999888877653 223444556677777888877777665553
No 194
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.3e-19 Score=151.64 Aligned_cols=180 Identities=16% Similarity=0.121 Sum_probs=104.7
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++...+++||++.+ |++++|+|+||||||||+++|+|+.... | ..|++|.|.++|.++...+. . ..
T Consensus 29 ~~~~~~~il~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~~-~-~~ 98 (268)
T PRK14248 29 IYYGEKRAVNDISMDIEK--HAVTALIGPSGCGKSTFLRSINRMNDLI---P---SARSEGEILYEGLNILDSNI-N-VV 98 (268)
T ss_pred EEeCCceeeeceEEEEcC--CCEEEEECCCCCCHHHHHHHHHhccccc---C---CCCCceEEEECCEEcccccc-c-HH
Confidence 344456689999999999 9999999999999999999999986410 0 00178999999987642110 0 00
Q ss_pred CccCCcchHHHHHHHHhCCCeE---EEEe--eCCCc-cccHHHHHHHHHhcccc------cCCCCCccc-----------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLI---FIVL--DVLKP-LGHKKLIEHELEGFGLR------LNKEPPNID----------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~---l~~~--d~~~~-~~~~~~~~~~l~~~~l~------~~~~~~~ls----------- 165 (225)
..+..+++++|....+.. ++. .... ..... ....+.+.+.++.+++. .++.+..||
T Consensus 99 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 011223333332111110 100 0000 00000 11123344555555441 233444455
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 178 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998887632 23333445566777777766666555443
No 195
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.6e-20 Score=155.34 Aligned_cols=180 Identities=15% Similarity=0.089 Sum_probs=105.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..|. ...|++|.|.++|.++...+.+ . ..
T Consensus 28 ~~~~~~il~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~I~~~g~~i~~~~~~-~-~~ 97 (267)
T PRK14235 28 FYGEKQALFDVDLDIPE--KTVTAFIGPSGCGKSTFLRCLNRMNDTI------DGCRVTGKITLDGEDIYDPRLD-V-VE 97 (267)
T ss_pred EECCEEEEEEEEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCceEEEECCEECcccccc-h-HH
Confidence 44445578999999999 9999999999999999999999998630 0001689999999776421100 0 00
Q ss_pred ccCCcchHHHHHHHHh-----CCCeEEEEeeCC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVAR-----TCSLIFIVLDVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~-----~~~~~l~~~d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+. +..+........ ......+.+.++++.+++. +++.+..||
T Consensus 98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 1111222222211111 000000000000 1111234456677777762 234445555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+....+.++
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999998887632 23333445566666776766666554443
No 196
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=9.3e-20 Score=141.90 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=110.2
Q ss_pred HHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 22 AKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
.++....+.|.++++++++||++.+ |+..+|+|.+|+|||||++||++...| +.|.+.|...+=...
T Consensus 7 L~V~~lsk~Yg~~~gc~~vsF~l~P--GeVLgiVGESGSGKtTLL~~is~rl~p-----------~~G~v~Y~~r~~~~~ 73 (258)
T COG4107 7 LSVSGLSKLYGPGKGCRDVSFDLYP--GEVLGIVGESGSGKTTLLKCISGRLTP-----------DAGTVTYRMRDGQPR 73 (258)
T ss_pred eeehhhhhhhCCCcCccccceeecC--CcEEEEEecCCCcHHhHHHHHhcccCC-----------CCCeEEEEcCCCCch
Confidence 3456677889999999999999999 999999999999999999999999998 999998865332222
Q ss_pred eCCCCCCC-----ccCCcchHHHHHHHHhCCCeE-EEEeeC------------CCccccHHHHHHHHHhcccc---cCCC
Q psy2924 102 DLPGIIEG-----AKDGKGRGRQVIAVARTCSLI-FIVLDV------------LKPLGHKKLIEHELEGFGLR---LNKE 160 (225)
Q Consensus 102 d~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~-l~~~d~------------~~~~~~~~~~~~~l~~~~l~---~~~~ 160 (225)
|.-.+.+. .+...+++.|.+ .|.+ +.+..+ ++.-..+..+.+.|+++.+. .+..
T Consensus 74 dl~~msEaeRR~L~RTeWG~VhQnP-----~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~ 148 (258)
T COG4107 74 DLYTMSEAERRRLLRTEWGFVHQNP-----RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDL 148 (258)
T ss_pred hHhhhchHHHHHHhhhccceeecCc-----cccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCc
Confidence 21111110 011111111110 1111 111110 11122344567788888884 3444
Q ss_pred CCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcC-----CeEEEeecCChHHHH
Q psy2924 161 PPNID---------------------NQVPQSELDLDTVKTILSEYRIHN-----ADITLRYDATSDDLI 204 (225)
Q Consensus 161 ~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~-----~~vi~~~~~~~~~~~ 204 (225)
|..+| +||||.+||...++.+++.++.+. +.|+++|+..+.++.
T Consensus 149 PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 55566 999999999999999999998764 348888987666554
No 197
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.78 E-value=7.4e-20 Score=150.29 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=102.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++++ |++++|+|+||||||||+++|+|.++| ++|.|.++|.++...+. ......+..
T Consensus 18 ~~il~~vs~~i~~--G~~~~I~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~-~~~~~~~~~ 83 (220)
T TIGR02982 18 KQVLFDINLEINP--GEIVILTGPSGSGKTTLLTLIGGLRSV-----------QEGSLKVLGQELYGASE-KELVQLRRN 83 (220)
T ss_pred eeEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEhHhcCH-hHHHHHHhh
Confidence 3478999999999 999999999999999999999999988 89999999986642210 000001122
Q ss_pred cchHHHHHHHHhCCCeEEE------EeeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFI------VLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~------~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
+++++|....+...++... ........+..+.+.++++.+++. .++.+..+|
T Consensus 84 i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~il 163 (220)
T TIGR02982 84 IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLV 163 (220)
T ss_pred eEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3333333322221111100 000011112234567788888873 344444555
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccccc
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~~ 215 (225)
+|||+++||+.+++.+.+.+.++. .+ ++++|+. + +...++....+..
T Consensus 164 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~--~-~~~~~d~v~~l~~ 216 (220)
T TIGR02982 164 LADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN--R-ILDVADRIVHMED 216 (220)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH--H-HHhhCCEEEEEEC
Confidence 999999999999988888887652 33 3444443 3 4455665555433
No 198
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.7e-19 Score=163.61 Aligned_cols=168 Identities=14% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|+++.... + ....+..
T Consensus 266 ~~~l~~isl~i~~--Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~g~~~~~~~-~--~~~~~~~ 329 (501)
T PRK11288 266 PGLREPISFSVRA--GEIVGLFGLVGAGRSELMKLLYGATRR-----------TAGQVYLDGKPIDIRS-P--RDAIRAG 329 (501)
T ss_pred CCcccceeEEEeC--CcEEEEEcCCCCCHHHHHHHHcCCCcC-----------CCceEEECCEECCCCC-H--HHHHhCC
Confidence 3478999999999 999999999999999999999999988 8999999987653110 0 0011122
Q ss_pred cchHHHHHH---HHhCCCeE---EEEee------C--CCccccHHHHHHHHHhcccc---cCCCCCccc-----------
Q psy2924 114 KGRGRQVIA---VARTCSLI---FIVLD------V--LKPLGHKKLIEHELEGFGLR---LNKEPPNID----------- 165 (225)
Q Consensus 114 ~~~~~~~~~---~~~~~~~~---l~~~d------~--~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------- 165 (225)
+++++|... .+...++. ..... . .......+.+.++++.+++. .++++..||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 333333321 11111110 00000 0 01111234577889999882 456666777
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+++.+.++. .+ ++..+|..+.+...++..+.+..+.+
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~t-viivsHd~~~~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVA-VLFVSSDLPEVLGVADRIVVMREGRI 474 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCE-EEEECCCHHHHHhhCCEEEEEECCEE
Confidence 999999999999999998886653 34 33355556777777777776655443
No 199
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.78 E-value=2.1e-19 Score=148.56 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=103.6
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR 116 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 116 (225)
.+++||++.+ |++++|+|+||||||||+++|+|+..|. + .+++|.|.++|.++...+. ....+++
T Consensus 2 l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-----~--~~~~G~i~~~g~~~~~~~~------~~~~i~~ 66 (230)
T TIGR02770 2 VQDLNLSLKR--GEVLALVGESGSGKSLTCLAILGLLPPG-----L--TQTSGEILLDGRPLLPLSI------RGRHIAT 66 (230)
T ss_pred ccceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCCc-----c--CccccEEEECCEechhhhh------hhheeEE
Confidence 5789999999 9999999999999999999999998751 0 0258999999977642210 0112233
Q ss_pred HHHHHH-HH-hCCCeEEE---Ee--eCCCccccHHHHHHHHHhcccc-----cCCCCCccc-------------------
Q psy2924 117 GRQVIA-VA-RTCSLIFI---VL--DVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID------------------- 165 (225)
Q Consensus 117 ~~~~~~-~~-~~~~~~l~---~~--d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls------------------- 165 (225)
+.|... .+ ....+... .. .........+.+.++++.+++. .++.+..||
T Consensus 67 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v 146 (230)
T TIGR02770 67 IMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF 146 (230)
T ss_pred EecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 222211 01 00000000 00 0000112234566777777763 244444555
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 147 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 147 LIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999888887653 224444556677777777776666555443
No 200
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=144.24 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=102.3
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
+.+|+||+|++ |++++++|+|||||||++++|+|+..| ++|.|.++|..-.. +...
T Consensus 39 AVqdisf~IP~--G~ivgflGaNGAGKSTtLKmLTGll~p-----------~~G~v~V~G~~Pf~-----------~~~~ 94 (325)
T COG4586 39 AVQDISFEIPK--GEIVGFLGANGAGKSTTLKMLTGLLLP-----------TSGKVRVNGKDPFR-----------RREE 94 (325)
T ss_pred hhheeeeecCC--CcEEEEEcCCCCcchhhHHHHhCcccc-----------CCCeEEecCcCcch-----------hHHH
Confidence 67899999999 999999999999999999999999999 99999998864321 1112
Q ss_pred hHHHHHHHHhCCCeEEE---EeeCC------C--cccc-HHHHHHHHHhcccc--cCC---------------------C
Q psy2924 116 RGRQVIAVARTCSLIFI---VLDVL------K--PLGH-KKLIEHELEGFGLR--LNK---------------------E 160 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~---~~d~~------~--~~~~-~~~~~~~l~~~~l~--~~~---------------------~ 160 (225)
+..+...++-.-.-... ..+.. . +... .++...+.+.+++. ++. +
T Consensus 95 ~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~ 174 (325)
T COG4586 95 YLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHP 174 (325)
T ss_pred HHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCC
Confidence 22222222211110000 00100 0 0000 12222333333332 222 3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhccccccceEEecc
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIYVPCIYLLN 221 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
|..|.+||||-+||...+..+.+.+++++.+ .++..+|..+++..+++..+....+.++.+
T Consensus 175 p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 175 PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred CcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 3444599999999999999999999887642 444466778888888887777666655543
No 201
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.2e-19 Score=153.52 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=103.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||+|.+ |++++|+|+||||||||+++|+|+..+.. + .|++|.|.++|.++...+.. . ..
T Consensus 22 ~~~~~~il~~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--~----~p~~G~v~~~g~~i~~~~~~-~-~~ 91 (269)
T PRK14259 22 SYGTFEAVKNVFCDIPR--GKVTALIGPSGCGKSTVLRSLNRMNDLIE--G----CSLKGRVLFDGTDLYDPRVD-P-VE 91 (269)
T ss_pred EECCEEEEcceEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccC--C----CCCceEEEECCEEcccccCC-H-HH
Confidence 44455688999999999 99999999999999999999999976200 0 01789999999875321100 0 00
Q ss_pred ccCCcchHHHHHHHH-----hCCCeEEEEeeCCCccccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVA-----RTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
.+..+++++|....+ ++..+.... .... ....+.+.++++.+++. .++.+..||
T Consensus 92 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~-~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral 169 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPKSIYENIAFGARI-NGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169 (269)
T ss_pred HhhceEEEccCCccchhhHHHHHhhhhhh-cCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence 111233333322111 111100000 0001 11123345556655441 233444455
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhcccccc
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+++.
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 9999999999999999998887632 233334555677777777766664
No 202
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.8e-20 Score=157.95 Aligned_cols=187 Identities=16% Similarity=0.109 Sum_probs=111.6
Q ss_pred HHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE
Q psy2924 21 IAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
+.+++.....+.++..++++||++.+ |++++|+|+||||||||+++|+|+..|.+.. +.+|.|.++|.++..
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPA--RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY------RYSGDVLLGGRSIFN 92 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhccCCcCCCC------CCceEEEECCEEccc
Confidence 33444445566666788999999999 9999999999999999999999998741000 258999999976542
Q ss_pred EeCCCCCCCccCCcchHHHHHHHHhCCCeE---EE---EeeCCCccccHHHHHHHHHhcccc------cCCCCCccc---
Q psy2924 101 LDLPGIIEGAKDGKGRGRQVIAVARTCSLI---FI---VLDVLKPLGHKKLIEHELEGFGLR------LNKEPPNID--- 165 (225)
Q Consensus 101 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---l~---~~d~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls--- 165 (225)
...+ ...+..+++++|....+. .++. .. ........+..+.+.++++.+++. +++.+..||
T Consensus 93 ~~~~---~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq 168 (276)
T PRK14271 93 YRDV---LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168 (276)
T ss_pred cchh---HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHH
Confidence 1100 011122233333211111 1110 00 000011111122345556666652 233344455
Q ss_pred ------------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+++.+.++.. ..++...|..+.+...++..+.+..+.++
T Consensus 169 ~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~ 241 (276)
T PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV 241 (276)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998887632 23333455567777777777666655554
No 203
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.2e-19 Score=151.78 Aligned_cols=180 Identities=17% Similarity=0.109 Sum_probs=102.6
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..|.. . ..++|.|.++|.++...+.. ...
T Consensus 13 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---~---~~~~G~i~~~g~~~~~~~~~--~~~ 82 (252)
T PRK14272 13 YYGDKQAVKNVNLDVQR--GTVNALIGPSGCGKTTFLRAINRMHDLTP---G---ARVTGRILLDGQDIYGPRVD--PVA 82 (252)
T ss_pred EECCEEeeccceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCCCc---C---CCCceeEEECCEEcccCccC--HHH
Confidence 34445689999999999 99999999999999999999999987500 0 00279999999765321000 000
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---e--eCC-CccccHHHHHHHHHhccc------ccCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---L--DVL-KPLGHKKLIEHELEGFGL------RLNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~--d~~-~~~~~~~~~~~~l~~~~l------~~~~~~~~ls------------ 165 (225)
.+..+++++|....+...++...+ . ... ......+.+.+.++.+++ ..++.+..||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 111223322221111111110000 0 000 001112223333443332 1233333444
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV 226 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998887642 23333445566777777777776555543
No 204
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=4.9e-18 Score=142.19 Aligned_cols=163 Identities=22% Similarity=0.271 Sum_probs=120.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCcc-CCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK-DGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~ 127 (225)
-++||||+||+|||||+|.|.|... .+|+.|+|||+...|.+..++.++.++||||++...+ .+..++......+..+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 3899999999999999999999987 7999999999999999999999999999999997643 2455677778888999
Q ss_pred CeEEEEeeCCCc-cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHH-HHHHHHHhhhcC--CeEE---EeecCCh
Q psy2924 128 SLIFIVLDVLKP-LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDT-VKTILSEYRIHN--ADIT---LRYDATS 200 (225)
Q Consensus 128 ~~~l~~~d~~~~-~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~-~~~i~~~l~~~~--~~vi---~~~~~~~ 200 (225)
|++++++++... ....+.+.+.++.. ..+.+..-+..+...+.. ...+.+.+.... ..++ ..+..++
T Consensus 87 Dlilfvvd~~~~~~~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred cEEEEEEeccccCCccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 999999998764 23344555555552 346666667777666655 455555555432 2333 3445678
Q ss_pred HHHHHHHhccccccceEE
Q psy2924 201 DDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (225)
+.+.+.+...+...|..|
T Consensus 161 ~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 161 DTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred HHHHHHHHHhCCCCCCcC
Confidence 888777765555444433
No 205
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.7e-19 Score=149.67 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=106.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..++++|++.+ |++++|+|+||||||||+++|+|+.+| +.|.+.++|.++...+. .+..++
T Consensus 14 ~l~~is~~i~~--Ge~~~i~G~nG~GKStLl~~l~G~~~p-----------~~G~v~i~g~~~~~~~~------~~~~i~ 74 (235)
T cd03299 14 KLKNVSLEVER--GDYFVILGPTGSGKSVLLETIAGFIKP-----------DSGKILLNGKDITNLPP------EKRDIS 74 (235)
T ss_pred eeeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcCcCCh------hHcCEE
Confidence 68899999999 999999999999999999999999988 89999999976532110 112233
Q ss_pred hHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 116 RGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
+++|....+...++...+ ..........+.+.++++.+++. .++.+..|| +|
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 333322222111110000 00011112233456778888773 455555566 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 168 VPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
|||++||+.+++.+.+.+.++. ...++..+|..+.+...++..+.+..+.++
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999887752 223333555567777777776666555443
No 206
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.78 E-value=1.8e-19 Score=148.56 Aligned_cols=165 Identities=17% Similarity=0.091 Sum_probs=99.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc---cccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS---EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~---~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+...+++||++.+ |++++|+||||||||||+++|+|+.. | ++|.+.++|.++... ..
T Consensus 20 ~~~l~~vsl~i~~--Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-----------~~G~i~~~g~~~~~~-------~~ 79 (226)
T cd03234 20 ARILNDVSLHVES--GQVMAILGSSGSGKTTLLDAISGRVEGGGT-----------TSGQILFNGQPRKPD-------QF 79 (226)
T ss_pred cccccCceEEEcC--CeEEEEECCCCCCHHHHHHHHhCccCCCCC-----------CceEEEECCEECChH-------Hh
Confidence 4578999999999 99999999999999999999999988 7 899999998764210 01
Q ss_pred cCCcchHHHHHHHHhCCCeEE--------EEeeCCCccccHHHHHH-HHHhcccc--cCCCCCccc--------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIF--------IVLDVLKPLGHKKLIEH-ELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l--------~~~d~~~~~~~~~~~~~-~l~~~~l~--~~~~~~~ls-------------- 165 (225)
+..+++++|....+...++.. ..............+.+ .++.+++. .++.+..||
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 111222222111111111000 00000000011112233 55555552 233334444
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCCh-HHHHHHHhccccccceEEe
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATS-DDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. .++++ ..|.. +++...++....+..+.++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii-~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVIL-TIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE-EecCCCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999887653 34444 33333 5677777777666555544
No 207
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.7e-20 Score=154.38 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=115.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
++.+|+||++.+ |+++||||.+||||||+.++|+|+.+ +.+.. .+|.|.|+|.++...+...........
T Consensus 19 ~av~~vs~~i~~--GE~lgiVGESGsGKS~~~~aim~llp~~~~~i-------~~G~i~f~g~~l~~l~~~~~~~iRG~~ 89 (316)
T COG0444 19 KAVDGVSFELKK--GEILGIVGESGSGKSVLAKAIMGLLPKPNARI-------VGGEILFDGKDLLSLSEKELRKIRGKE 89 (316)
T ss_pred EEEeceeEEEcC--CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeE-------eeeEEEECCcccccCCHHHHHhhcCce
Confidence 578899999999 99999999999999999999999987 41111 678999999986554422111112233
Q ss_pred cchHHHHHHHHhCCCeE--------EEEeeCC-CccccHHHHHHHHHhcccc-----cCCCCCccc--------------
Q psy2924 114 KGRGRQVIAVARTCSLI--------FIVLDVL-KPLGHKKLIEHELEGFGLR-----LNKEPPNID-------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~--------l~~~d~~-~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls-------------- 165 (225)
+++++|.....-+.-.- +...... ...+..+.+.++|+.+++. ++..|.+||
T Consensus 90 I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala 169 (316)
T COG0444 90 IAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA 169 (316)
T ss_pred EEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh
Confidence 45555543222111100 0000001 1233456788999999993 567888888
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||.+||...++.|+++++++.. . ++||||. .-+.+++|...++-.+.++
T Consensus 170 ~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl--~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 170 LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL--GVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhcceEEEEECcEEE
Confidence 8999999999999999999988743 2 6666664 3344556655555444443
No 208
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.6e-20 Score=171.99 Aligned_cols=171 Identities=16% Similarity=0.067 Sum_probs=112.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||+|.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+.... ...+..+
T Consensus 338 ~~l~~vs~~i~~--Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~i 403 (623)
T PRK10261 338 HAVEKVSFDLWP--GETLSLVGESGSGKSTTGRALLRLVES-----------QGGEIIFNGQRIDTLSPGKL-QALRRDI 403 (623)
T ss_pred EEEeeeEeEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCcEEEECCEECCcCCHHHH-HHhcCCe
Confidence 467899999999 999999999999999999999999988 89999999987642210000 0011234
Q ss_pred chHHHHH--HHHhCCCeEEEE---e--eCC-CccccHHHHHHHHHhcccc---cCCCCCccc------------------
Q psy2924 115 GRGRQVI--AVARTCSLIFIV---L--DVL-KPLGHKKLIEHELEGFGLR---LNKEPPNID------------------ 165 (225)
Q Consensus 115 ~~~~~~~--~~~~~~~~~l~~---~--d~~-~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------ 165 (225)
++++|.. .++...++...+ + ... ......+.+.++++.+++. .++.+..||
T Consensus 404 ~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ 483 (623)
T PRK10261 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK 483 (623)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 4444432 122111111000 0 011 1112235677889999983 466777788
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++.. ..++..+|.++.+..+++...++..+.++
T Consensus 484 llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 484 VIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999876521 22333445566777777777666555554
No 209
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.3e-19 Score=145.47 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=124.7
Q ss_pred HHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 22 AKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
.+++.....+.++...+++|+.|++ |+..+|+|+|||||||||+.++|.+.| .+|.+.+.|+.+-..
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~--ge~W~I~G~NGsGKTTLL~ll~~~~~p-----------ssg~~~~~G~~~G~~ 98 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNP--GEHWAIVGPNGAGKTTLLSLLTGEHPP-----------SSGDVTLLGRRFGKG 98 (257)
T ss_pred EEecceEEEECCEeeccccceeecC--CCcEEEECCCCCCHHHHHHHHhcccCC-----------CCCceeeeeeeccCC
Confidence 4455555667778899999999999 999999999999999999999999998 889999998877655
Q ss_pred eCCCCCCCccCCcchHHHHH-HHHhC----CCeEEEEeeCC---C----ccccHHHHHHHHHhcccc--cCCCCCccc--
Q psy2924 102 DLPGIIEGAKDGKGRGRQVI-AVART----CSLIFIVLDVL---K----PLGHKKLIEHELEGFGLR--LNKEPPNID-- 165 (225)
Q Consensus 102 d~~g~~~~~~~~~~~~~~~~-~~~~~----~~~~l~~~d~~---~----~~~~~~~~~~~l~~~~l~--~~~~~~~ls-- 165 (225)
++- ...+..++++...+ ..++. .++++.-+... . ...+.+.+..+++.+|+. .+++...||
T Consensus 99 ~~~---~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~G 175 (257)
T COG1119 99 ETI---FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQG 175 (257)
T ss_pred cch---HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHh
Confidence 541 22233345433322 12221 22232221111 1 123345677888888883 444444555
Q ss_pred -------------------ccCCCCCCCHHHHHHHHHHhhhcCCe----EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 -------------------NQVPQSELDLDTVKTILSEYRIHNAD----ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 -------------------lDEp~~~LD~~~~~~i~~~l~~~~~~----vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
||||+++||...++.+++.+.++... -++.-.|..+++..-++..+.+.++.++.
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999998876432 22223445677777777777777776654
No 210
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=9.5e-20 Score=145.53 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=94.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.+.++|.++...+.. ...+..++
T Consensus 15 ~l~~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~ 78 (182)
T cd03215 15 AVRDVSFEVRA--GEIVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVTRRSPR---DAIRAGIA 78 (182)
T ss_pred eecceEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccCHH---HHHhCCeE
Confidence 68899999999 999999999999999999999999988 899999999765432110 00111222
Q ss_pred hHHHHH---HHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC-
Q psy2924 116 RGRQVI---AVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN- 189 (225)
Q Consensus 116 ~~~~~~---~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~- 189 (225)
+++|.. ..+...++ .+..... ........+++.+ .+-..++.+.+||||++||+.+++.+.+.+.++.
T Consensus 79 ~~~q~~~~~~~~~~~t~----~e~l~~~--~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 152 (182)
T cd03215 79 YVPEDRKREGLVLDLSV----AENIALS--SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD 152 (182)
T ss_pred EecCCcccCcccCCCcH----HHHHHHH--hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH
Confidence 222210 00000000 0000000 0000011122222 1334677888999999999999999999887763
Q ss_pred -CeEEEeecCChHHHHHHHhccccc
Q psy2924 190 -ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 190 -~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
...++..+|..+.+...++....+
T Consensus 153 ~~~tiii~sh~~~~~~~~~d~v~~l 177 (182)
T cd03215 153 AGKAVLLISSELDELLGLCDRILVM 177 (182)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 223333445566666666654444
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.78 E-value=1.2e-19 Score=165.83 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=112.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+||||||||||+++|+|+.+| ++++|.|.++|+++...+. ...
T Consensus 10 ~~~~~~il~~isl~i~~--Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~---~~~ 75 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRP--GECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNI---RDT 75 (500)
T ss_pred EeCCeEeecceEEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCH---HHH
Confidence 44455678999999999 999999999999999999999999864 1158999999976532110 000
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee------CCCccccHHHHHHHHHhcccc--c-CCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD------VLKPLGHKKLIEHELEGFGLR--L-NKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d------~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~ls------------ 165 (225)
.+..+++++|....+...++. .+... ........+.+.++++.+++. . ++.+..||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHH
Confidence 112344444433222222211 00000 011112234577888888883 2 34456677
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 9999999999999999988876522 23333455667777777776666555443
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.9e-19 Score=149.73 Aligned_cols=180 Identities=14% Similarity=0.066 Sum_probs=105.1
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..+... .+++|.|.++|+++...+.+ ...
T Consensus 15 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~--~~~ 84 (253)
T PRK14261 15 WYGEKHALYDITISIPK--NRVTALIGPSGCGKSTLLRCFNRMNDLIPG------CRITGDILYNGENIMDSGAD--VVA 84 (253)
T ss_pred EECCeeeeeeeEEEECC--CcEEEEECCCCCCHHHHHHHHhccccCCCC------CCcceEEEECCEEccccccc--hhh
Confidence 44456689999999999 999999999999999999999998653000 01379999999876432111 001
Q ss_pred ccCCcchHHHHHHHHh-----CCCeEEEEeeCCCccccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 110 AKDGKGRGRQVIAVAR-----TCSLIFIVLDVLKPLGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~-----~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
.+..+++++|....+. +..+..............+.+.++++.+++. .++.+..||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 1122333333221111 1000000000001111123445555555441 233333444
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+.+.+..+.. ..++..+|..+.+...++..+....+.++
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999888877632 23333455566777777766666555543
No 213
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.78 E-value=1e-18 Score=134.63 Aligned_cols=127 Identities=23% Similarity=0.230 Sum_probs=88.9
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
+....++++|++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|...
T Consensus 12 ~~~~l~~~~~~~~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~~-------------- 64 (144)
T cd03221 12 GKLLLKDISLTINP--GDRIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTVK-------------- 64 (144)
T ss_pred CceEEEeeEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeEE--------------
Confidence 34578899999999 999999999999999999999999988 899999987410
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCCeE
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADI 192 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~v 192 (225)
+++++| .+. .+.+++. +.. .+-..++.+.+|||+++||+.++..+.+.++++..++
T Consensus 65 -i~~~~~-----------------lS~-G~~~rv~-lar----al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~ti 120 (144)
T cd03221 65 -IGYFEQ-----------------LSG-GEKMRLA-LAK----LLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTV 120 (144)
T ss_pred -EEEEcc-----------------CCH-HHHHHHH-HHH----HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 111111 111 1111211 011 1223677888999999999999999999998876554
Q ss_pred EEeecCChHHHHHHHhccc
Q psy2924 193 TLRYDATSDDLIDVVEGNR 211 (225)
Q Consensus 193 i~~~~~~~~~~~~~~~~~~ 211 (225)
++ .+|..+.+...++..+
T Consensus 121 l~-~th~~~~~~~~~d~v~ 138 (144)
T cd03221 121 IL-VSHDRYFLDQVATKII 138 (144)
T ss_pred EE-EECCHHHHHHhCCEEE
Confidence 43 4444566555555443
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.4e-19 Score=154.34 Aligned_cols=178 Identities=14% Similarity=0.097 Sum_probs=104.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..+. +..|++|.|.++|.++...+... ..
T Consensus 48 ~~~~~~il~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~------~~~p~~G~I~i~G~~i~~~~~~~--~~ 117 (285)
T PRK14254 48 FYGDEQALDDVSMDIPE--NQVTAMIGPSGCGKSTFLRCINRMNDLI------DAARVEGELTFRGKNVYDADVDP--VA 117 (285)
T ss_pred EECCEeeEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCcc------cCCCCceEEEECCEEccccccch--Hh
Confidence 44455688999999999 9999999999999999999999998620 00017899999998754211000 00
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---eeCC-CccccHHHHHHHHHhcccc------cCCCCCccc--------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LDVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID-------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls-------------- 165 (225)
.+..+++++|....+.. ++...+ .... ......+.+.++++.+++. +++.+..||
T Consensus 118 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 118 LRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 11122222222111110 110000 0000 0111233456667676652 244444555
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccc-cccceEE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNR-IYVPCIY 218 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~-~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++.. ..++...|..+.+...++..+ ....+.+
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i 258 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGEL 258 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEE
Confidence 9999999999999999999987632 233344555666666666543 2344444
No 215
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.1e-19 Score=150.27 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=104.8
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC---ccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY---SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~---~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+..++++||++.+ |++++|+|+||||||||+++|+|+. ++ ++++|.|.++|.++.....+ ..
T Consensus 14 ~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---------~~~~G~i~~~g~~~~~~~~~--~~ 80 (250)
T PRK14245 14 GDFHALKGISMEIEE--KSVVAFIGPSGCGKSTFLRLFNRMNDLIPA---------TRLEGEIRIDGRNIYDKGVQ--VD 80 (250)
T ss_pred CCEeEEeeeeEEEeC--CCEEEEECCCCCCHHHHHHHHhhhhcccCC---------CCCceEEEECCEeccccccc--HH
Confidence 344578899999999 9999999999999999999999973 32 01479999999876431100 00
Q ss_pred CccCCcchHHHHHHHHhCCCeE---EEEee--C-CCccccHHHHHHHHHhcccc------cCCCCCccc-----------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLI---FIVLD--V-LKPLGHKKLIEHELEGFGLR------LNKEPPNID----------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~---l~~~d--~-~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls----------- 165 (225)
..+..+++++|....+. .++. ..... . .......+.+.++++.+++. +++.+..||
T Consensus 81 ~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred HHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 11122333333221111 0110 00000 0 01111223456677777652 234444555
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.+
T Consensus 160 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 160 AMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999887632 2334455556677777777666655544
No 216
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.5e-19 Score=152.05 Aligned_cols=186 Identities=18% Similarity=0.123 Sum_probs=110.3
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 19 ARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
..+.+++...+++.++..++++||++.+ |++++|+|+||||||||+++|+|+..| .+|.|.++|.-.
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~iaG~~~~-----------~~G~v~~~G~~~ 74 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPN--NSIFGIMGPSGSGKSTLLKVLNRLIEI-----------YDSKIKVDGKVL 74 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CcCceeEcCEEE
Confidence 4456667777778778899999999999 999999999999999999999999988 776666555321
Q ss_pred EE-EeCCCCC-CCccCCcchHHHHHHHHhCCCeEEEE---ee--CCC-ccccHHHHHHHHHhcccc------cCCCCCcc
Q psy2924 99 QL-LDLPGII-EGAKDGKGRGRQVIAVARTCSLIFIV---LD--VLK-PLGHKKLIEHELEGFGLR------LNKEPPNI 164 (225)
Q Consensus 99 ~~-~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~-~~~~~~~~~~~l~~~~l~------~~~~~~~l 164 (225)
.. .+..... ...+..+++++|....+...++...+ .. ... ..+..+.+.++++.+++. .+..+..+
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 154 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQL 154 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccC
Confidence 10 0110000 00112233333322222111110000 00 011 111123456677777662 23333445
Q ss_pred c---------------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceE
Q psy2924 165 D---------------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCI 217 (225)
Q Consensus 165 s---------------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
| +||||++||+..+..+.+.+.++.. ..++...|..+.+...++..+....+.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~ 229 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGE 229 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 5 9999999999999999988877642 223334444566666677665554333
No 217
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.77 E-value=1.3e-19 Score=146.92 Aligned_cols=166 Identities=19% Similarity=0.090 Sum_probs=99.5
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+.. .
T Consensus 10 ~~~~~~l~~is~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-----------~~G~i~~~g~~~~~~~~~---~ 73 (200)
T cd03217 10 VGGKEILKGVNLTIKK--GEVHALMGPNGSGKSTLAKTIMGHPKYEV-----------TEGEILFKGEDITDLPPE---E 73 (200)
T ss_pred eCCEEeeeccceEECC--CcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------CccEEEECCEECCcCCHH---H
Confidence 3345688999999999 9999999999999999999999994 56 899999999866432211 0
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHHhh
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSEYR 186 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~ 186 (225)
..+..+++++|....+....+..++ +.... .....+.+++.+ .+-..++.+.+||||++||+.+...+++.+.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~l-~~~~~----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~ 148 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGVKNADFL-RYVNE----GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148 (200)
T ss_pred HhhCcEEEeecChhhccCccHHHHH-hhccc----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0111234444433222211110000 00000 000011111111 1334677888999999999999999999887
Q ss_pred hcC---CeEEEeecCChHHHHH-HHhccccccceEE
Q psy2924 187 IHN---ADITLRYDATSDDLID-VVEGNRIYVPCIY 218 (225)
Q Consensus 187 ~~~---~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~ 218 (225)
++. .++++ .+|..+.+.. .++....+..+.+
T Consensus 149 ~~~~~~~tiii-~sh~~~~~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 149 KLREEGKSVLI-ITHYQRLLDYIKPDRVHVLYDGRI 183 (200)
T ss_pred HHHHCCCEEEE-EecCHHHHHHhhCCEEEEEECCEE
Confidence 763 33333 3444555554 4666555554444
No 218
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.77 E-value=2e-19 Score=152.08 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=105.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+... ....+..
T Consensus 25 ~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~sG~i~~~g~~~~~~~~~~-~~~~~~~ 90 (268)
T PRK10419 25 QTVLNNVSLSLKS--GETVALLGRSGCGKSTLARLLVGLESP-----------SQGNVSWRGEPLAKLNRAQ-RKAFRRD 90 (268)
T ss_pred eeeEeceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccChhH-HHHHHhc
Confidence 4578999999999 999999999999999999999999988 8999999998654322100 0001112
Q ss_pred cchHHHHHH--HHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 114 KGRGRQVIA--VARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 114 ~~~~~~~~~--~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
+++++|... +....++...+ ............+.++++.+++. .++.+..||
T Consensus 91 i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p 170 (268)
T PRK10419 91 IQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEP 170 (268)
T ss_pred EEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCC
Confidence 233323211 00001100000 00011112233567778877773 344555566
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+.+.+.++. ...++..+|..+.+...++..+.+..+.+
T Consensus 171 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 171 KLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999988888887652 22333344456677777776666655444
No 219
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=2.9e-19 Score=161.14 Aligned_cols=169 Identities=19% Similarity=0.175 Sum_probs=113.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
.++.+++||++.+ |+++||||++|||||||.++|+|+..| +.|.+.++|.+ ...+ .+-....+..
T Consensus 304 ~~Av~~VSf~l~~--GE~lglVGeSGsGKSTlar~i~gL~~P-----------~~G~i~~~g~~-~~~~-~~~~~~~r~~ 368 (539)
T COG1123 304 VKAVDDVSFDLRE--GETLGLVGESGSGKSTLARILAGLLPP-----------SSGSIIFDGQD-LDLT-GGELRRLRRR 368 (539)
T ss_pred eeeeeeeeeEecC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEEeCcc-cccc-cchhhhhhhh
Confidence 4578899999999 999999999999999999999999999 99999999987 2222 2111112222
Q ss_pred cchHHHHHHHH--hCCCeE---EEEee--C-CCccccHHHHHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 114 KGRGRQVIAVA--RTCSLI---FIVLD--V-LKPLGHKKLIEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~--~~~~~~---l~~~d--~-~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
+.+++|.++.. +..++. ...+. . ....+.++.+.++++.+++. +++.|++||
T Consensus 369 ~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P 448 (539)
T COG1123 369 IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEP 448 (539)
T ss_pred eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCC
Confidence 33333332211 111110 00000 0 01122345688999999993 788888888
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+|||+++||+..+..+++.++++.. + ++|+|+ ++-+..+++...++..+.++
T Consensus 449 ~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD--l~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 449 KLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD--LAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC--HHHHHhhCceEEEEECCeEE
Confidence 8999999999999999999988743 3 556555 45555666666666555544
No 220
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.8e-19 Score=149.63 Aligned_cols=177 Identities=17% Similarity=0.127 Sum_probs=104.0
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+.. |. .+++|.|.++|.++...... .
T Consensus 14 ~~~~~~~l~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~--------~~~~G~i~~~g~~~~~~~~~--~ 81 (252)
T PRK14239 14 YYNKKKALNSVSLDFYP--NEITALIGPSGSGKSTLLRSINRMNDLNPE--------VTITGSIVYNGHNIYSPRTD--T 81 (252)
T ss_pred EECCeeeeeeeeEEEcC--CcEEEEECCCCCCHHHHHHHHhcccccCCC--------CCccceEEECCEECcCcccc--h
Confidence 34445678999999999 99999999999999999999999853 30 01379999999765311100 0
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE-----eeCCCc-cccHHHHHHHHHhcccc------cCCCCCccc----------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKP-LGHKKLIEHELEGFGLR------LNKEPPNID---------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~-~~~~~~~~~~l~~~~l~------~~~~~~~ls---------- 165 (225)
...+..+++++|....+. .++...+ ...... ....+.+.++++.+++. .++.+..||
T Consensus 82 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred HhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 001112333333221111 1110000 001011 11123345556665541 233344444
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI 226 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887632 23333455567777777776666555543
No 221
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=1.3e-19 Score=143.58 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..+++++|++.+ |++++|+|+||+|||||+++|+|+.+| .+|.|.++|.++...+.. ..+..+
T Consensus 16 ~~l~~~~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i 78 (173)
T cd03246 16 PVLRNVSFSIEP--GESLAIIGPSGSGKSTLARLILGLLRP-----------TSGRVRLDGADISQWDPN----ELGDHV 78 (173)
T ss_pred cceeeeEEEECC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEEcccCCHH----HHHhhe
Confidence 478999999999 999999999999999999999999988 899999999865422110 011112
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
++++|....+.. + +.+.... ....+++.+ .+...++.+.+||||++||+.++..+.+.+.++.
T Consensus 79 ~~~~q~~~~~~~-t----v~~~lLS-------~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 79 GYLPQDDELFSG-S----IAENILS-------GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred EEECCCCccccC-c----HHHHCcC-------HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH
Confidence 222221111100 0 0000000 011111112 1334677888999999999999999998887753
No 222
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.77 E-value=1.4e-19 Score=166.53 Aligned_cols=178 Identities=13% Similarity=0.110 Sum_probs=110.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+||||||||||+++|+|+.+|.. ..+++|.|.++|.++...+...........
T Consensus 22 ~~~l~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 93 (529)
T PRK15134 22 RTVVNDVSLQIEA--GETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNK 93 (529)
T ss_pred eeeeeceEEEEeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCc
Confidence 3578999999999 99999999999999999999999987400 011589999999876532211000000112
Q ss_pred cchHHHHHH--HHhCCCe---EEE---EeeCCCccccHHHHHHHHHhcccc-----cCCCCCccc---------------
Q psy2924 114 KGRGRQVIA--VARTCSL---IFI---VLDVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID--------------- 165 (225)
Q Consensus 114 ~~~~~~~~~--~~~~~~~---~l~---~~d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls--------------- 165 (225)
+++++|... .+....+ +.. ...........+.+.++++.+++. .++.+..||
T Consensus 94 ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~ 173 (529)
T PRK15134 94 IAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173 (529)
T ss_pred eEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc
Confidence 333333211 0000000 000 000111122345677888888883 355666777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. ...++..+|..+.+...++..+...++.++
T Consensus 174 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 174 RPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999887752 222333455566777777776666555543
No 223
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.77 E-value=5.9e-19 Score=161.31 Aligned_cols=171 Identities=11% Similarity=0.161 Sum_probs=111.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+..| +++|.|.++|.++.... .....+..
T Consensus 273 ~~~l~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p----------~~~G~i~~~g~~~~~~~---~~~~~~~~ 337 (500)
T TIGR02633 273 RKRVDDVSFSLRR--GEILGVAGLVGAGRTELVQALFGAYPG----------KFEGNVFINGKPVDIRN---PAQAIRAG 337 (500)
T ss_pred ccccccceeEEeC--CcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCeEEEECCEECCCCC---HHHHHhCC
Confidence 3578899999999 999999999999999999999999873 16899999997653110 00111223
Q ss_pred cchHHHHHH---HHhCCCe---EEE-EeeCC------CccccHHHHHHHHHhcccc---cCCCCCccc------------
Q psy2924 114 KGRGRQVIA---VARTCSL---IFI-VLDVL------KPLGHKKLIEHELEGFGLR---LNKEPPNID------------ 165 (225)
Q Consensus 114 ~~~~~~~~~---~~~~~~~---~l~-~~d~~------~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------ 165 (225)
+++++|... .+...++ +.+ ..... ......+.+.++++.+++. .++.+..||
T Consensus 338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a 417 (500)
T TIGR02633 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM 417 (500)
T ss_pred CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence 455555431 2221111 111 00000 1111234577889998883 355666777
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+..+.. ..++..+|..+.+...++..+.+..+.++
T Consensus 418 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999988877766522 23444556677777778877777555544
No 224
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.7e-19 Score=149.62 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=103.6
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+..+. |. .+++|+|.++|.++...+.+ ....
T Consensus 13 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~~~~~~~~--~~~~ 82 (250)
T PRK14240 13 YGDFQALKKINLDIEE--NQVTALIGPSGCGKSTFLRTLNRMNDLI---PS---VKIEGEVLLDGQDIYKSDID--VNQL 82 (250)
T ss_pred ECCceeeecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccc---CC---CCCceEEEECCEEccccccc--hHHH
Confidence 3445678999999999 9999999999999999999999987520 00 01579999999865421100 0001
Q ss_pred cCCcchHHHHHHHHhCCCeE---EEE--eeCCC-ccccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLI---FIV--LDVLK-PLGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~---l~~--~d~~~-~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
+..+++++|....+. .++. .+. ..... .....+.+.++++.+++. .++.+..||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 112233222211111 1110 000 00000 111233455566666541 234444555
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV 224 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999988877632 22333444466777777766666555443
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=2.1e-19 Score=150.43 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=104.6
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
.++...+++||++.+ |++++|+|+||||||||+++|+|+..|.. ..+++|.|.++|.++...+ +.. ...+
T Consensus 15 ~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~-~~~-~~~~ 84 (251)
T PRK14270 15 GEKQALNDINLPIYE--NKITALIGPSGCGKSTFLRCLNRMNDLIS------NVKIEGEVLLDGKNIYDKD-VDV-VELR 84 (251)
T ss_pred CCeeeeeceeEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCccc------CCCCccEEEECCEeccccc-ccH-HHHH
Confidence 344578999999999 99999999999999999999999876410 0015799999998764211 000 0011
Q ss_pred CCcchHHHHHHHHhCCCeE---EEEe--eCC-CccccHHHHHHHHHhcccc------cCCCCCccc--------------
Q psy2924 112 DGKGRGRQVIAVARTCSLI---FIVL--DVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID-------------- 165 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~---l~~~--d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls-------------- 165 (225)
..+++++|....+. .++. .+.. ... ......+.+.++++.+++. .++.+..||
T Consensus 85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 85 KRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred hheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 12233332211111 1100 0000 000 0111123455666666541 233444455
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++. .++++ .+|..+.+...++..+....+.++
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiii-vsH~~~~~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI-VTHNMQQASRVSDYTAFFLMGDLI 225 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEE-EEcCHHHHHHhcCEEEEEECCeEE
Confidence 999999999999999988887763 33333 345567777777777666555543
No 226
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=2.6e-19 Score=163.65 Aligned_cols=168 Identities=13% Similarity=0.181 Sum_probs=110.3
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++...+. ....+..++
T Consensus 267 ~l~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~G~~~p-----------~~G~I~~~g~~i~~~~~---~~~~~~~i~ 330 (501)
T PRK10762 267 GVNDVSFTLRK--GEILGVSGLMGAGRTELMKVLYGALPR-----------TSGYVTLDGHEVVTRSP---QDGLANGIV 330 (501)
T ss_pred CcccceEEEcC--CcEEEEecCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCH---HHHHHCCCE
Confidence 57899999999 999999999999999999999999988 89999999976532110 000112344
Q ss_pred hHHHHHH---HHhCCCeE---EE-E---eeC----CCccccHHHHHHHHHhcccc---cCCCCCccc-------------
Q psy2924 116 RGRQVIA---VARTCSLI---FI-V---LDV----LKPLGHKKLIEHELEGFGLR---LNKEPPNID------------- 165 (225)
Q Consensus 116 ~~~~~~~---~~~~~~~~---l~-~---~d~----~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------- 165 (225)
+++|... .+...++. .+ . ... .......+.+.++++.+++. .++.+..||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 4444321 11111110 00 0 000 01112234577888888882 455566777
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999998887632 23333556677777777777776555543
No 227
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.5e-19 Score=148.37 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=101.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+..+...+++||++.+ |++++|+|+||||||||+++|+|+..+ +| ..+.+|.|.++|+++...+.+ ...
T Consensus 13 ~~~~~~~l~~~sl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~~~~G~v~i~g~~~~~~~~~--~~~ 82 (251)
T PRK14251 13 SYGNYEALHGISLDFEE--KELTALIGPSGCGKSTFLRCLNRMNDD---IE---NIKITGEIKFEGQNIYGSKMD--LVE 82 (251)
T ss_pred EECCeeeeeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhhcccc---cc---CCCcceEEEECCEEcccccch--HHH
Confidence 34445688999999999 999999999999999999999999851 00 001689999999865311100 000
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee--CC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD--VL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..++++.|....+. .++. ..... .. ......+.+.++++.+++. +++.+..||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 0111222222111110 0000 00000 00 0111123345556665551 233344444
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+....+.+
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEE
Confidence 9999999999999999998887632 2233344456666666666655544444
No 228
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.77 E-value=3.6e-19 Score=143.62 Aligned_cols=157 Identities=18% Similarity=0.113 Sum_probs=96.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+. .| .+|.|.++|+++... ..+
T Consensus 22 ~~~l~~~~~~i~~--Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~-------~~~ 81 (194)
T cd03213 22 KQLLKNVSGKAKP--GELTAIMGPSGAGKSTLLNALAGRRTGLG-----------VSGEVLINGRPLDKR-------SFR 81 (194)
T ss_pred ccceecceEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEeCchH-------hhh
Confidence 4588999999999 9999999999999999999999999 88 899999999865420 011
Q ss_pred CCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHH
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSE 184 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~ 184 (225)
..+++.+|....+...++...+ ....+ ....+++.+ .+-..++.+.+||||++||+.+++.+.+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS--------~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 153 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKLRGLS--------GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHHhccCC--------HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 1122222211111100000000 00000 011111111 13346778889999999999999999998
Q ss_pred hhhcC---CeEEEeecCCh-HHHHHHHhccccccceEEe
Q psy2924 185 YRIHN---ADITLRYDATS-DDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 185 l~~~~---~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~ 219 (225)
+.++. .++++ ..|.. +++...++..+.+..+.++
T Consensus 154 l~~~~~~~~tiii-~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 154 LRRLADTGRTIIC-SIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHHhCCCEEEE-EecCchHHHHHhcCEEEEEeCCEEE
Confidence 87763 23333 33333 3566667766666555443
No 229
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.2e-19 Score=169.87 Aligned_cols=172 Identities=10% Similarity=0.081 Sum_probs=111.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE-----EeCCCCCC-
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL-----LDLPGIIE- 108 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~-----~d~~g~~~- 108 (225)
...+++||++.+ |++++|+|+||||||||+++|+|++.| .+|.|.++|..+.- .+......
T Consensus 30 ~~l~~is~~v~~--Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 96 (623)
T PRK10261 30 AAVRNLSFSLQR--GETLAIVGESGSGKSVTALALMRLLEQ-----------AGGLVQCDKMLLRRRSRQVIELSEQSAA 96 (623)
T ss_pred eEEEeeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CCeEEEECCEEeccccccccccccCCHH
Confidence 478899999999 999999999999999999999999988 89999988865410 01000000
Q ss_pred ----CccCCcchHHHHH--HHHhCCCeEEEEe------eCCCccccHHHHHHHHHhcccc-----cCCCCCccc------
Q psy2924 109 ----GAKDGKGRGRQVI--AVARTCSLIFIVL------DVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID------ 165 (225)
Q Consensus 109 ----~~~~~~~~~~~~~--~~~~~~~~~l~~~------d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls------ 165 (225)
.....+++++|.. .++...++...+. ......+..+.+.++++.+|+. +++.+..||
T Consensus 97 ~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QR 176 (623)
T PRK10261 97 QMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQR 176 (623)
T ss_pred HHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHH
Confidence 0011244444432 1111111110000 0111122345677889999983 466777788
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.++++. ...++..+|.++.+..+++..+++..+.++
T Consensus 177 v~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 177 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999999999999888887763 123344555567777777776666555544
No 230
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.2e-19 Score=149.12 Aligned_cols=178 Identities=17% Similarity=0.102 Sum_probs=101.8
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..|. |. .+++|.|.++|.++...+.. ...
T Consensus 12 ~~~~~~~l~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~---~~~~G~i~i~g~~~~~~~~~--~~~ 81 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFK--NQITAIIGPSGCGKTTLLRSINRMNDHI---PG---FRVEGKIYFKGQDIYDPQLD--VTE 81 (250)
T ss_pred EeCCceeEeeeeEeecC--CCEEEEECCCCCCHHHHHHHHhccccCC---CC---CCcceEEEECCEEcccchhh--HHH
Confidence 34445678999999999 9999999999999999999999997631 00 01679999999765421100 000
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee--CCCc-cccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD--VLKP-LGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~~~-~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+. ..+. .+... .... ....+.+.+.++.+++. .++.+..||
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 1112222222211111 0100 00000 0000 11122344555555541 233333444
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+....+.+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999988877632 2233344446666677776666555444
No 231
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.8e-19 Score=148.00 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=48.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++.
T Consensus 16 ~~l~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~ 67 (234)
T cd03251 16 PVLRDISLDIPA--GETVALVGPSGSGKSTLVNLIPRFYDV-----------DSGRILIDGHDVR 67 (234)
T ss_pred cceeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhccccC-----------CCCEEEECCEEhh
Confidence 578999999999 999999999999999999999999988 8999999997653
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2e-19 Score=150.47 Aligned_cols=177 Identities=16% Similarity=0.095 Sum_probs=104.1
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
.++...+++||++.+ |++++|+|+||||||||+++|+|+..+. | ..+.+|.|.++|.++...+.+. ...+
T Consensus 16 ~~~~~l~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~i~G~~~~~---~---~~~~~G~i~~~g~~i~~~~~~~--~~~~ 85 (251)
T PRK14244 16 GSKQILFDINLDIYK--REVTAFIGPSGCGKSTFLRCFNRMNDFV---P---NCKVKGELDIDGIDVYSVDTNV--VLLR 85 (251)
T ss_pred CCeeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcccC---C---CCCcceEEEECCEehHhcccch--HHHh
Confidence 345678999999999 9999999999999999999999997510 0 0016899999997653221110 0011
Q ss_pred CCcchHHHHHHHHhCCCeE---EE---EeeCC-CccccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 112 DGKGRGRQVIAVARTCSLI---FI---VLDVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~---l~---~~d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
..+++++|....+.. ++. .+ ..+.. ......+.+.++++.+++. +++.+..||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 122332222111110 100 00 00000 0011123455667777762 233344455
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++...|..+.+...++..+.+..+.++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 9999999999999999888877632 22333445566666777766666555543
No 233
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=8.2e-19 Score=138.81 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=108.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
...++|++|.. |+.++++||+|||||||||.++|+..| ..|.|.++|++++ -||-. .+
T Consensus 20 ~le~vsL~ia~--ge~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i~---gPgae------rg 77 (259)
T COG4525 20 ALEDVSLTIAS--GELVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRIE---GPGAE------RG 77 (259)
T ss_pred hhhccceeecC--CCEEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEecc---CCCcc------ce
Confidence 78899999999 999999999999999999999999998 9999999998765 23322 13
Q ss_pred hHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 116 RGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
.++|...+++-.+++.++ +.+..+.+..+.+.+++..+|+. .++.+..|| +|
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 333332222222222111 11233344456778888888883 344444555 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhc----CCe-EEEeecCChHHHHHHHhccccc--cceEEe
Q psy2924 168 VPQSELDLDTVKTILSEYRIH----NAD-ITLRYDATSDDLIDVVEGNRIY--VPCIYL 219 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~----~~~-vi~~~~~~~~~~~~~~~~~~~~--~~~~~~ 219 (225)
||+.+||.-.++.+.+.+.++ ++. ..++ |++++..-+.+.-+++ .|+.++
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliT--H~ieEAlflatrLvvlsp~pgRvv 214 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLIT--HDIEEALFLATRLVVLSPGPGRVV 214 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe--ccHHHHHhhhheeEEecCCCceee
Confidence 999999998777777666543 333 3444 4567777777666665 455554
No 234
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=4.9e-19 Score=145.31 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=48.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+++||++++ |++++|+|+||||||||+++|+|...| ++|.|.++|.++.
T Consensus 18 ~~l~~i~~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~ 69 (221)
T cd03244 18 PVLKNISFSIKP--GEKVGIVGRTGSGKSSLLLALFRLVEL-----------SSGSILIDGVDIS 69 (221)
T ss_pred ccccceEEEECC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhH
Confidence 588999999999 999999999999999999999999988 8999999987653
No 235
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.3e-19 Score=148.66 Aligned_cols=178 Identities=14% Similarity=0.102 Sum_probs=104.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++++ |++++|+|+||||||||+++|+|+..|..+ .+++|.|.++|.++...+.+ ...
T Consensus 21 ~~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~------~~~~G~i~~~g~~~~~~~~~--~~~ 90 (259)
T PRK14274 21 WYGQHHALKNINLSIPE--NEVTAIIGPSGCGKSTFIKTLNLMIQMVPN------VKLTGEMNYNGSNILKGKVD--LVE 90 (259)
T ss_pred EECCeeeEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccCCCC------CCCceEEEECCEEccccccC--HHH
Confidence 44455688999999999 999999999999999999999998752000 01479999999876421100 000
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEee--CC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLD--VL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d--~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+.. ++. .+... .. ......+.+.++++.+++. +++.+..||
T Consensus 91 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara 169 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA 169 (259)
T ss_pred HhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 11223333332211111 110 00000 00 0111123455666666652 234444555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+.+..+.+
T Consensus 170 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 232 (259)
T PRK14274 170 LATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGEL 232 (259)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999888887632 2233344456666667776656554444
No 236
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.76 E-value=1e-17 Score=141.34 Aligned_cols=160 Identities=16% Similarity=0.060 Sum_probs=95.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|........+++...
T Consensus 37 ~~il~~is~~i~~--Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~---- 99 (264)
T PRK13546 37 FFALDDISLKAYE--GDVIGLVGINGSGKSTLSNIIGGSLSP-----------TVGKVDRNGEVSVIAISAGLSGQ---- 99 (264)
T ss_pred eEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEeEEecccCCCCC----
Confidence 3467899999999 999999999999999999999999988 89999999853221112222110
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC---------------------CCCCcccccCCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN---------------------KEPPNIDNQVPQ 170 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~---------------------~~~~~lslDEp~ 170 (225)
.. +.+........ ......+..+.+..+++.+++. .+ ..++.+.+||||
T Consensus 100 ~t-v~enl~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt 171 (264)
T PRK13546 100 LT-GIENIEFKMLC-------MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171 (264)
T ss_pred Cc-HHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 01 11111100000 0000111112223333333331 22 234455599999
Q ss_pred CCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 171 SELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 171 ~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
++||+..++.+++.+.++. ...++..+|..+.+...++.......+.+
T Consensus 172 ~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 172 SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEE
Confidence 9999999988888887652 22233344446666666776665555444
No 237
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.76 E-value=3.9e-19 Score=162.90 Aligned_cols=167 Identities=14% Similarity=0.179 Sum_probs=107.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
.++++||++++ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.. ...+..++
T Consensus 278 ~l~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~ 341 (510)
T PRK15439 278 GFRNISLEVRA--GEILGLAGVVGAGRTELAETLYGLRPA-----------RGGRIMLNGKEINALSTA---QRLARGLV 341 (510)
T ss_pred CccceeEEEcC--CcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCcE
Confidence 57899999999 999999999999999999999999988 899999999765321110 00111233
Q ss_pred hHHHHHH---HHhCCCeE----EEE---ee-CCCccccHHHHHHHHHhcccc---cCCCCCccc----------------
Q psy2924 116 RGRQVIA---VARTCSLI----FIV---LD-VLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------- 165 (225)
Q Consensus 116 ~~~~~~~---~~~~~~~~----l~~---~d-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------- 165 (225)
+++|... ++...++. ... .. ........+.+.++++.+++. .++++..||
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~ 421 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEAS 421 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence 3333210 11111110 000 00 001112234577888888883 455666777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++. ...++..+|..+.+...++..+.+..+.+
T Consensus 422 p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 422 PQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481 (510)
T ss_pred CCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999998887752 12233355666777777777666655544
No 238
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.6e-19 Score=149.75 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=103.0
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..+.. | ..++|.|.++|.++...+.. ...
T Consensus 16 ~~~~~~il~~isl~i~~--Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~--~----~~~~G~i~~~g~~i~~~~~~--~~~ 85 (259)
T PRK14260 16 YYNTSKAIEGISMDIYR--NKVTAIIGPSGCGKSTFIKTLNRISELEG--P----VKVEGVVDFFGQNIYDPRIN--INR 85 (259)
T ss_pred EECCeEeecceEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhcCccc--C----CccceEEEECCEeccccccc--hHh
Confidence 34445678999999999 99999999999999999999999876400 0 00379999999866421100 001
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE------eeCCCccccHHHHHHHHHhccc------ccCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGL------RLNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l------~~~~~~~~ls------------ 165 (225)
.+..+++++|....+. .++...+ ..........+.+.++++.+++ .+++.+..||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 1112333333221111 1110000 0000111112345556666654 1333444455
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhcccccc
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+.++..+.+.+..+.. ..++..+|..+.+...++..+++.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 9999999999999999998877632 233334556777777777666653
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4.4e-19 Score=146.38 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=48.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+++||++.+ |++++|+||||||||||+++|+|+.+| .+|.|.++|.++.
T Consensus 17 ~~l~~isl~i~~--G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~ 68 (229)
T cd03254 17 PVLKDINFSIKP--GETVAIVGPTGAGKTTLINLLMRFYDP-----------QKGQILIDGIDIR 68 (229)
T ss_pred ccccceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEeHH
Confidence 488999999999 999999999999999999999999988 8999999987653
No 240
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.76 E-value=5.9e-19 Score=146.47 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=95.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++...+.. ..+..+
T Consensus 17 ~~l~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i 79 (238)
T cd03249 17 PILKGLSLTIPP--GKTVALVGSSGCGKSTVVSLLERFYDP-----------TSGEILLDGVDIRDLNLR----WLRSQI 79 (238)
T ss_pred cceeceEEEecC--CCEEEEEeCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEehhhcCHH----HHHhhE
Confidence 478899999999 999999999999999999999999988 899999999765321100 001122
Q ss_pred chHHHHHHHHhCCCeE---EEEeeCCCccccHH-----HHHHHHHhc--cc--ccC---------------------CCC
Q psy2924 115 GRGRQVIAVARTCSLI---FIVLDVLKPLGHKK-----LIEHELEGF--GL--RLN---------------------KEP 161 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~---l~~~d~~~~~~~~~-----~~~~~l~~~--~l--~~~---------------------~~~ 161 (225)
++++|...++. .++. .+............ .+.+.+..+ ++ ..+ ..+
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 33333222211 1110 00000000000000 011111211 11 112 233
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
..+.+||||++||+..++.+.+.+.++.. ..++..+|..+.+. .++..+.+..+.++
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV 216 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE
Confidence 44449999999999999999999877642 22233334455554 56766666555544
No 241
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.8e-19 Score=146.43 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=103.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..|... .+++|.+.++|.++.....+ ..
T Consensus 12 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~~---~~ 80 (249)
T PRK14253 12 FYGENQALKSINLPIPA--RQVTALIGPSGCGKSTLLRCLNRMNDLIEG------VKITGKLTMDGEDIYGNIDV---AD 80 (249)
T ss_pred EECCeeeeecceEEecC--CCEEEEECCCCCCHHHHHHHHHhhcccccC------CCCceEEEECCEEcccccch---HH
Confidence 34455689999999999 999999999999999999999999875100 01589999999765311000 00
Q ss_pred ccCCcchHHHHHHHHhCCCe---EEEEe--eCCC-ccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSL---IFIVL--DVLK-PLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~---~l~~~--d~~~-~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+. .++ +.+.. .... .....+.+.+.++.+++. .++.+..||
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 1112233222211111 010 00000 0000 011122344455555431 223333444
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++...++..+.++
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV 223 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998887642 23333445567777777766666555544
No 242
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=2.7e-19 Score=164.25 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=107.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc-CceEEEEeCCCC--CCCcc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGI--IEGAK 111 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~--~~~~~ 111 (225)
...+++||++++ |++++|+||||||||||+++|+|+.+| ++|.|.++ |.+...+..... ....+
T Consensus 298 ~il~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~g~~~~~~~~~~~~~~~~~~ 364 (520)
T TIGR03269 298 KAVDNVSLEVKE--GEIFGIVGTSGAGKTTLSKIIAGVLEP-----------TSGEVNVRVGDEWVDMTKPGPDGRGRAK 364 (520)
T ss_pred eEEeeEEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEecCCccccccccchhhHHHHh
Confidence 468899999999 999999999999999999999999988 89999995 542211100000 00001
Q ss_pred CCcchHHHHHHHHhCCCeEEEE---ee-CCCccccHHHHHHHHHhcccc-------cCCCCCccc---------------
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIV---LD-VLKPLGHKKLIEHELEGFGLR-------LNKEPPNID--------------- 165 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~---~d-~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ls--------------- 165 (225)
..+++++|....+...++...+ .. ........+.+.++++.+++. .++++..||
T Consensus 365 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 444 (520)
T TIGR03269 365 RYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK 444 (520)
T ss_pred hhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1233333322111111110000 00 011111234567788888883 355666777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++. .+| +..+|..+.+...++..+.+.++.++
T Consensus 445 ~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv-i~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 445 EPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF-IIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEE-EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999986642 333 33455567777778877777666554
No 243
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.8e-19 Score=149.83 Aligned_cols=172 Identities=17% Similarity=0.121 Sum_probs=103.8
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++++ |++++|+|+||||||||+++|+|++.|...+ +.+|+|.++|.++...+... ...
T Consensus 18 ~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~~--~~~ 87 (261)
T PRK14263 18 YGNFMAVRDSHVPIRK--NEITGFIGPSGCGKSTVLRSLNRMNDLVKGF------RFEGHVHFLGQDVYGKGVDP--VVV 87 (261)
T ss_pred eCCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcccccccCC------CCceEEEECCEeccccccch--Hhh
Confidence 3344578999999999 9999999999999999999999998752111 15799999998764211110 011
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE---eeC-CCccccHHHHHHHHHhcccc------cCCCCCccc---------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV---LDV-LKPLGHKKLIEHELEGFGLR------LNKEPPNID--------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~---~d~-~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls--------------- 165 (225)
+..+++++|....+ ..++...+ ... .......+.+.++++.+++. .++.+..||
T Consensus 88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~ 166 (261)
T PRK14263 88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT 166 (261)
T ss_pred hhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 12233333322111 11110000 000 00111123456666666651 122233444
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccc
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+++.+.++.. ..++..+|..+.+...++..+++
T Consensus 167 ~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 167 EPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999987642 23444555677777777776666
No 244
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.76 E-value=1.7e-19 Score=165.98 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=109.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+. + .+|.|.++|.++...+..... ..+..
T Consensus 299 ~~il~~isl~i~~--Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~ 363 (529)
T PRK15134 299 NVVVKNISFTLRP--GETLGLVGESGSGKSTTGLALLRLI-N-----------SQGEIWFDGQPLHNLNRRQLL-PVRHR 363 (529)
T ss_pred ceeeecceeEEcC--CCEEEEECCCCCCHHHHHHHHhCcC-C-----------CCcEEEECCEEccccchhhHH-Hhhhc
Confidence 3478999999999 9999999999999999999999997 5 689999999876432211000 00112
Q ss_pred cchHHHHH--HHHhCCCeEEEE-----eeC--CCccccHHHHHHHHHhcccc---cCCCCCccc----------------
Q psy2924 114 KGRGRQVI--AVARTCSLIFIV-----LDV--LKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------- 165 (225)
Q Consensus 114 ~~~~~~~~--~~~~~~~~~l~~-----~d~--~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------- 165 (225)
+++++|.. ..+...++...+ ... .......+.+.++++.+++. .++.+..||
T Consensus 364 i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 443 (529)
T PRK15134 364 IQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILK 443 (529)
T ss_pred eEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCC
Confidence 33333322 111111111000 000 11112234577888888883 456666777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++. .+|+ ..+|.++.+...++..+++..+.++
T Consensus 444 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi-~vsHd~~~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 444 PSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL-FISHDLHVVRALCHQVIVLRQGEVV 505 (529)
T ss_pred CCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEE-EEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999988652 2333 3455667777777776666555543
No 245
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.76 E-value=4.7e-19 Score=148.25 Aligned_cols=170 Identities=22% Similarity=0.176 Sum_probs=99.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCC--CccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV--YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~--~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+ +.| ++|.|.++|.++...+....
T Consensus 16 ~~~~~~~l~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~- 81 (252)
T CHL00131 16 SVNENEILKGLNLSINK--GEIHAIMGPNGSGKSTLSKVIAGHPAYKI-----------LEGDILFKGESILDLEPEER- 81 (252)
T ss_pred EeCCEEeeecceeEEcC--CcEEEEECCCCCCHHHHHHHHcCCCcCcC-----------CCceEEECCEEcccCChhhh-
Confidence 33445689999999999 999999999999999999999998 356 89999999976643221100
Q ss_pred CCccCCcchHHHHHHHHhCCCeE------EE----E--eeCCCccccHHHHHHHHHhcccc---cCCCCC-ccc------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLI------FI----V--LDVLKPLGHKKLIEHELEGFGLR---LNKEPP-NID------ 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~------l~----~--~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~-~ls------ 165 (225)
....+++++|....+...+.. .. . .......+..+.+.++++.+++. .++.+. .||
T Consensus 82 --~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 82 --AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred --heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 001111222211111000000 00 0 00000011123456777777773 244444 366
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhcC---CeE-EEeecCChHHHHHH-HhccccccceE
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIHN---ADI-TLRYDATSDDLIDV-VEGNRIYVPCI 217 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~~---~~v-i~~~~~~~~~~~~~-~~~~~~~~~~~ 217 (225)
+||||++||+.++..+.+.+.++. .+| +++|+ .+.+... .+....+..+.
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~--~~~~~~~~~d~i~~l~~G~ 229 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY--QRLLDYIKPDYVHVMQNGK 229 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC--HHHHHhhhCCEEEEEeCCE
Confidence 999999999999999998887753 343 34443 4444433 34444443333
No 246
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.76 E-value=2.5e-18 Score=161.26 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=109.7
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce-EEEEeCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-IQLLDLPGI 106 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~-i~~~d~~g~ 106 (225)
.+++.++..++++||+|.+ |++++|+|||||||||||++|+|...| ++|.|.+++.. +..+.....
T Consensus 10 s~~~~~~~il~~is~~i~~--Ge~v~LvG~NGsGKSTLLriiaG~~~p-----------~~G~I~~~~~~~~~~l~q~~~ 76 (635)
T PRK11147 10 WLSFSDAPLLDNAELHIED--NERVCLVGRNGAGKSTLMKILNGEVLL-----------DDGRIIYEQDLIVARLQQDPP 76 (635)
T ss_pred EEEeCCceeEeCcEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEeCCCCEEEEeccCCC
Confidence 3456667789999999999 999999999999999999999999988 89999988742 222221100
Q ss_pred CCCccCCcchHHHHH-----------HHHhCCCeEE---EE-------------eeCCCccccHHHHHHHHHhcccccCC
Q psy2924 107 IEGAKDGKGRGRQVI-----------AVARTCSLIF---IV-------------LDVLKPLGHKKLIEHELEGFGLRLNK 159 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~-----------~~~~~~~~~l---~~-------------~d~~~~~~~~~~~~~~l~~~~l~~~~ 159 (225)
......+.+.. ..+......+ .. ++..........+.++++.+++..++
T Consensus 77 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 152 (635)
T PRK11147 77 ----RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA 152 (635)
T ss_pred ----CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCC
Confidence 11112222211 0010000000 00 00000111234577888888886555
Q ss_pred CCCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 160 EPPNID---------------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 160 ~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.+..|| +||||++||+.+++.+.+.+..+...|++ .+|..+.+...++..+...++.+
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvli-vsHd~~~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIF-ISHDRSFIRNMATRIVDLDRGKL 231 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhcCeEEEEECCEE
Confidence 566666 99999999999999999999988655333 33444555556666655555444
Q ss_pred e
Q psy2924 219 L 219 (225)
Q Consensus 219 ~ 219 (225)
+
T Consensus 232 ~ 232 (635)
T PRK11147 232 V 232 (635)
T ss_pred E
Confidence 3
No 247
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.7e-18 Score=143.56 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=119.1
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
+++|..+. ..+++|.|++|+|||||+|+|+|+.+| +.|.|.++|+-+.-....-+.+..++.++|++
T Consensus 16 ~a~~~~p~--~GvTAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 16 DANFTLPA--RGITALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred EEeccCCC--CceEEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 34555555 459999999999999999999999999 99999999986543221112233345688999
Q ss_pred HHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCccc---------------------ccCCCCCCCH
Q psy2924 119 QVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNID---------------------NQVPQSELDL 175 (225)
Q Consensus 119 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls---------------------lDEp~~~LD~ 175 (225)
|...+|++.++--++..+.... ....+..+...+|+ .+++.|..|| +|||.++||.
T Consensus 83 QDARLFpH~tVrgNL~YG~~~~-~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWKS-MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred eccccccceEEecchhhhhccc-chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 9888888876544433332222 34456777888888 3666776777 9999999999
Q ss_pred HHHHHHHHHhhhcCCe---EEEeecCChHHHHHHHhccccccceEE
Q psy2924 176 DTVKTILSEYRIHNAD---ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 176 ~~~~~i~~~l~~~~~~---vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.-..+++..+..+..+ -++--+|.++++.-+.+...++..+.+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV 207 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKV 207 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeE
Confidence 8888998888877543 122245678898888888777765554
No 248
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-18 Score=160.20 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=105.0
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~ 112 (225)
+..++++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.+++. .+.++..... .....
T Consensus 332 ~~~l~~is~~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~~~q~~~-~~~~~ 397 (530)
T PRK15064 332 GPLFKNLNLLLEA--GERLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENANIGYYAQDHA-YDFEN 397 (530)
T ss_pred ceeecCcEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEccccc-ccCCC
Confidence 4568899999999 999999999999999999999999988 8999999874 3443321100 00000
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------ccC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------NQV 168 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------lDE 168 (225)
... +.+....+ .. .....+.+.++++.+++. .++.+..|| +||
T Consensus 398 ~~t-~~~~~~~~----------~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 398 DLT-LFDWMSQW----------RQ--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCc-HHHHHHHh----------cc--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000 11111110 00 011234566777777762 355556666 999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 169 PQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 169 p~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||++||+.+++.+.+.+..+..+|++ .+|..+.+...++..+....+.++
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~~~tvi~-vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKYEGTLIF-VSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEE-EeCCHHHHHHhCCEEEEEECCeEE
Confidence 99999999999999999988655333 445567777777776666555543
No 249
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.76 E-value=3.9e-19 Score=146.41 Aligned_cols=137 Identities=16% Similarity=0.105 Sum_probs=86.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|.++...+.. ..+..+
T Consensus 28 ~~l~~is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i 90 (226)
T cd03248 28 LVLQDVSFTLHP--GEVTALVGPSGSGKSTVVALLENFYQP-----------QGGQVLLDGKPISQYEHK----YLHSKV 90 (226)
T ss_pred ccccceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCCchHHcCHH----HHHhhE
Confidence 478999999999 999999999999999999999999988 899999999765422110 111122
Q ss_pred chHHHHHHHHhCCCe---EEEEeeCCCccc-----cHHHHHHHHHhc--ccc--cCCCCCccc-----------------
Q psy2924 115 GRGRQVIAVARTCSL---IFIVLDVLKPLG-----HKKLIEHELEGF--GLR--LNKEPPNID----------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~---~l~~~d~~~~~~-----~~~~~~~~l~~~--~l~--~~~~~~~ls----------------- 165 (225)
++++|....+.. ++ +........... ....+.+.++.+ ++. .+..+..||
T Consensus 91 ~~~~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 91 SLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEecccHHHhh-hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 333332222210 11 010111100000 001134455555 442 334444555
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
+||||++||+..++.+.+.+.++.
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~~ 197 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDWP 197 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 999999999999999999888764
No 250
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=1.2e-18 Score=145.64 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=99.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++.+ |++++|+|+||||||||+++|+|+. + .+|.|.++|.++...+... ....++
T Consensus 11 ~l~~vsl~i~~--Gei~~l~G~nGsGKSTLl~~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~----~~~~i~ 72 (248)
T PRK03695 11 RLGPLSAEVRA--GEILHLVGPNGAGKSTLLARMAGLL-P-----------GSGSIQFAGQPLEAWSAAE----LARHRA 72 (248)
T ss_pred eecceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCC-C-----------CCeEEEECCEecCcCCHHH----HhhheE
Confidence 67899999999 9999999999999999999999987 4 5799999997653211100 001112
Q ss_pred hHHHHHHHHhCCCe---E-EEEeeCCCccccHHHHHHHHHhcccc-----------------------cCC-------CC
Q psy2924 116 RGRQVIAVARTCSL---I-FIVLDVLKPLGHKKLIEHELEGFGLR-----------------------LNK-------EP 161 (225)
Q Consensus 116 ~~~~~~~~~~~~~~---~-l~~~d~~~~~~~~~~~~~~l~~~~l~-----------------------~~~-------~~ 161 (225)
+++|....+...++ + .............+.+.++++.+++. +-. .+
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 22221110000000 0 00000011111123445555555551 111 33
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
..+.+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..++...+.++
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 56779999999999999999988877632 23344555566777777776666555443
No 251
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.2e-19 Score=150.78 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=103.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++...+ .. ..+..++
T Consensus 22 ~l~~v~l~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~---~~-~~~~~i~ 84 (277)
T PRK13642 22 QLNGVSFSITK--GEWVSIIGQNGSGKSTTARLIDGLFEE-----------FEGKVKIDGELLTAEN---VW-NLRRKIG 84 (277)
T ss_pred eeeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEECCcCC---HH-HHhcceE
Confidence 78999999999 999999999999999999999999998 9999999997653211 00 1122334
Q ss_pred hHHHHHH-HHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 116 RGRQVIA-VARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 116 ~~~~~~~-~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
+++|... .+...++...+ .. ........+.+.++++.+++. .++.+..|| +
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llll 164 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL 164 (277)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4334321 12122211000 00 111111224566777877772 344444555 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
||||++||+.++..+++.+.++. .+|++ .+|..+.+. .++..+++..+.+
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil-~sH~~~~~~-~~d~i~~l~~G~i 218 (277)
T PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLS-ITHDLDEAA-SSDRILVMKAGEI 218 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHH-hCCEEEEEECCEE
Confidence 99999999999999998887652 33333 334444443 3666665554444
No 252
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.2e-18 Score=158.98 Aligned_cols=168 Identities=13% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+.+| ++|.|.++|.++..... ....+..+
T Consensus 262 ~~l~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~---~~~~~~~i 325 (491)
T PRK10982 262 PSIRDVSFDLHK--GEILGIAGLVGAKRTDIVETLFGIREK-----------SAGTITLHGKKINNHNA---NEAINHGF 325 (491)
T ss_pred cccceeeEEEeC--CcEEEEecCCCCCHHHHHHHHcCCCcC-----------CccEEEECCEECCCCCH---HHHHHCCC
Confidence 468899999999 999999999999999999999999988 89999999976532110 00011223
Q ss_pred chHHHHHH---HHhCCCe----EEE-E---ee--C-CCccccHHHHHHHHHhcccc---cCCCCCccc------------
Q psy2924 115 GRGRQVIA---VARTCSL----IFI-V---LD--V-LKPLGHKKLIEHELEGFGLR---LNKEPPNID------------ 165 (225)
Q Consensus 115 ~~~~~~~~---~~~~~~~----~l~-~---~d--~-~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------ 165 (225)
++++|... .+++.++ +.. + .. . .......+.+.++++.+++. .++++..||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 405 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW 405 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence 33333211 1111111 000 0 00 0 01111234567778888772 355666677
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhc---CCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIH---NADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+++.+++.+..+ +.+ ++..+|..+.+...++..+.+..+.++
T Consensus 406 l~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~t-vi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG-IIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCE-EEEECCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999998888654 334 333555567777777777766555443
No 253
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.5e-19 Score=150.23 Aligned_cols=179 Identities=16% Similarity=0.098 Sum_probs=104.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..+... -|++|.|.++|.++...+.+ ...
T Consensus 34 ~~~~~~il~~vs~~i~~--Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~------~~~~G~i~i~g~~i~~~~~~--~~~ 103 (272)
T PRK14236 34 FYGDKQALFDISMRIPK--NRVTAFIGPSGCGKSTLLRCFNRMNDLVDN------CRIEGEIRLDGQNIYDKKVD--VAE 103 (272)
T ss_pred EECCeeEeeeEEEEEcC--CCEEEEECCCCCCHHHHHHHHHhcCCCccC------CCCceEEEECCEECcccccC--HHH
Confidence 34445678999999999 999999999999999999999999762000 01689999999876421100 001
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEE--eeCC-CccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIV--LDVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~--~d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
.+..+++++|....+.. ++. .+. .... ......+.+.++++.+++. .++.+..||
T Consensus 104 ~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 182 (272)
T PRK14236 104 LRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA 182 (272)
T ss_pred HhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence 11223333332111110 110 000 0000 1111123355556655541 233344454
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 9999999999999999998877632 23333445566666777766666555543
No 254
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.6e-19 Score=150.71 Aligned_cols=173 Identities=14% Similarity=0.072 Sum_probs=103.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-----cccccccceeeccceEEEEcCceEEEEeCCC
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-----EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-----~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g 105 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|+.. | ++|.|.++|.++......
T Consensus 49 ~~~~~il~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~-----------~~G~I~~~g~~i~~~~~~- 114 (286)
T PRK14275 49 YGEFEAVKKVNADILS--KYVTAIIGPSGCGKSTFLRAINRMNDLIPSCH-----------TTGALMFDGEDIYGKFTD- 114 (286)
T ss_pred ECCEEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccCCCCC-----------CceEEEECCEEhhhcccc-
Confidence 3334578899999999 99999999999999999999999854 3 789999999765321100
Q ss_pred CCCCccCCcchHHHHHHHHhCCCeE---EEEe--eCCC-ccccHHHHHHHHHhcccc------cCCCCCccc--------
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTCSLI---FIVL--DVLK-PLGHKKLIEHELEGFGLR------LNKEPPNID-------- 165 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~--d~~~-~~~~~~~~~~~l~~~~l~------~~~~~~~ls-------- 165 (225)
. ...+..+++++|....+.. ++. .+.. .... .....+.+.++++.+++. +++.+..||
T Consensus 115 ~-~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 115 E-VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred h-HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 0 0011122222222111100 000 0000 0000 011123445556555541 233344454
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.++
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999887643 23344555667777777776666555443
No 255
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.76 E-value=1e-18 Score=144.88 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=96.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++...+.. ..+..
T Consensus 15 ~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~ 77 (237)
T cd03252 15 PVILDNISLRIKP--GEVVGIVGRSGSGKSTLTKLIQRFYVP-----------ENGRVLVDGHDLALADPA----WLRRQ 77 (237)
T ss_pred ccceeceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCeehHhcCHH----HHhhc
Confidence 3478999999999 999999999999999999999999988 899999999765322110 01112
Q ss_pred cchHHHHHHHHhCCCeEEE--Eee-CCCccccHH-----HHHHHHHhc--cc--ccCCCCCccc----------------
Q psy2924 114 KGRGRQVIAVARTCSLIFI--VLD-VLKPLGHKK-----LIEHELEGF--GL--RLNKEPPNID---------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~--~~d-~~~~~~~~~-----~~~~~l~~~--~l--~~~~~~~~ls---------------- 165 (225)
+++++|....+. .++... ... ........+ .+.+.++.+ ++ .+++.+..||
T Consensus 78 i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 78 VGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 233333221111 111000 000 000000000 112223322 11 1223333444
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.+.++.. ..++..+|..+.+ ..++..+.+..+.++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~ 215 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRIV 215 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEECCEEE
Confidence 9999999999999999999887642 2233344445555 346665555555443
No 256
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.8e-19 Score=149.16 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=102.0
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++..++++||++++ |++++|+|+||||||||+++|+|+.+|.+.. +..|.+.++|+++.....+ . ...
T Consensus 17 ~~~~~il~~is~~i~~--Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i------~~~G~i~~~g~~i~~~~~~-~-~~~ 86 (261)
T PRK14258 17 YDTQKILEGVSMEIYQ--SKVTAIIGPSGCGKSTFLKCLNRMNELESEV------RVEGRVEFFNQNIYERRVN-L-NRL 86 (261)
T ss_pred eCCeeEeeceEEEEcC--CcEEEEECCCCCCHHHHHHHHhcccCCCCCc------cccceEEECCEEhhccccc-h-HHh
Confidence 3344578999999999 9999999999999999999999998761110 1368899988765321100 0 001
Q ss_pred cCCcchHHHHHHHHhCCCeEEEE-----eeCCCc-cccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIV-----LDVLKP-LGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~-~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
+..+++++|....+. .++...+ ...... .+..+.+.++++.+++. .++.+..||
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 112222222111111 0100000 000001 11123455666666641 234444555
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccccc
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~ 215 (225)
+||||++||+.....+.+.+.++ +.+|++ .+|..+.+...++..+++..
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii-vsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI-VSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE-EECCHHHHHHhcCEEEEEcc
Confidence 99999999999999998888764 233333 44556777777777766654
No 257
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.9e-19 Score=148.46 Aligned_cols=174 Identities=15% Similarity=0.104 Sum_probs=100.9
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++...+++||++.+ |++++|+|+||||||||+++|+|+..+... .+++|.|.++|.++...+.. . .
T Consensus 18 ~~~~~~~il~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~ 87 (264)
T PRK14243 18 VYYGSFLAVKNVWLDIPK--NQITAFIGPSGCGKSTILRCFNRLNDLIPG------FRVEGKVTFHGKNLYAPDVD-P-V 87 (264)
T ss_pred EEECCEEEeecceEEEcC--CCEEEEECCCCCCHHHHHHHHHhhhcccCC------CCCceEEEECCEEccccccC-h-H
Confidence 344445678999999999 999999999999999999999998752000 01679999999866321100 0 0
Q ss_pred CccCCcchHHHHHHHH-----hCCCeEEEEeeCCCccccHHHHHHHHHhcccc------cCCCCCccc------------
Q psy2924 109 GAKDGKGRGRQVIAVA-----RTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR------LNKEPPNID------------ 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls------------ 165 (225)
..+..+++++|....+ ++....... ... .....+.+.++++.+++. .++.+..||
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~-~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARI-NGY-KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhh-cCc-chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 0111233333321111 111000000 000 001122333344444331 223333344
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHHHHhcccccc
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+..+..+.+.+..+... .++..+|..+.+...++....+.
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999999988776422 33334566778888877766654
No 258
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=1e-18 Score=142.12 Aligned_cols=161 Identities=20% Similarity=0.146 Sum_probs=94.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++...+. ...+..+
T Consensus 22 ~~l~~isl~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~----~~~~~~i 84 (207)
T cd03369 22 PVLKNVSFKVKA--GEKIGIVGRTGAGKSTLILALFRFLEA-----------EEGKIEIDGIDISTIPL----EDLRSSL 84 (207)
T ss_pred ccccCceEEECC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEhHHCCH----HHHHhhE
Confidence 578999999999 999999999999999999999999988 89999999976532110 0011123
Q ss_pred chHHHHHHHHhCCCeEEE--EeeCCCccccHHHHHHHHH--------------hccc--ccCCCCCcccccCCCCCCCHH
Q psy2924 115 GRGRQVIAVARTCSLIFI--VLDVLKPLGHKKLIEHELE--------------GFGL--RLNKEPPNIDNQVPQSELDLD 176 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~--~~d~~~~~~~~~~~~~~l~--------------~~~l--~~~~~~~~lslDEp~~~LD~~ 176 (225)
++++|...++.. ++... ..... ..+.+.+.++ ++.+ .+-..++.+.+||||++||+.
T Consensus 85 ~~v~q~~~~~~~-tv~~~l~~~~~~----~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 85 TIIPQDPTLFSG-TIRSNLDPFDEY----SDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEecCCcccCc-cHHHHhcccCCC----CHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 333332211110 11000 00000 1111222222 1111 022344555699999999999
Q ss_pred HHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 177 TVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 177 ~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.+..+.+.+.++.. ..++..+|..+.+.. ++..+.+..+.+
T Consensus 160 ~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i 201 (207)
T cd03369 160 TDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEV 201 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEE
Confidence 99999998887632 222223333444443 565555554444
No 259
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=6.5e-18 Score=134.34 Aligned_cols=134 Identities=16% Similarity=0.042 Sum_probs=88.7
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++....+ +|++++ |++++|+||||||||||+++|+|+..| ++|.|.++|..+....
T Consensus 9 ~~~~~~~l~~-~~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~------- 67 (177)
T cd03222 9 RYGVFFLLVE-LGVVKE--GEVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYKP------- 67 (177)
T ss_pred EECCEEEEcc-CcEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEEc-------
Confidence 3444445655 489999 999999999999999999999999998 9999999987654321
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
| ... .+. .+++++.- ... +...++.+.+||||++||+..++.+.+.+.++.
T Consensus 68 ---------q------~~~--------LSg-Gq~qrv~l-ara----l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 68 ---------Q------YID--------LSG-GELQRVAI-AAA----LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ---------c------cCC--------CCH-HHHHHHHH-HHH----HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 0 000 111 11222111 111 123577888999999999999998888887652
Q ss_pred --C-eEEEeecCChHHHHHHHhccccc
Q psy2924 190 --A-DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 190 --~-~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
. ..++..+|..+.+...++..+..
T Consensus 119 ~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 119 EEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred HcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 1 22333444456666566655444
No 260
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.75 E-value=9.4e-19 Score=146.03 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=49.5
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEE
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
+.++..++++||++.+ |++++|+|+||||||||+++|+|+. .| ++|.|.++|.++.
T Consensus 11 ~~~~~~l~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~ 68 (248)
T PRK09580 11 VEDKAILRGLNLEVRP--GEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLL 68 (248)
T ss_pred eCCeeeeecceeEEcC--CCEEEEECCCCCCHHHHHHHHcCCccCCC-----------CceEEEECCCccc
Confidence 3445688999999999 9999999999999999999999995 46 8999999997664
No 261
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.2e-19 Score=142.01 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=93.0
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|... | ++|.+.++|.++. . ..+
T Consensus 20 ~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-----------~~G~i~~~g~~~~--~------~~~ 78 (192)
T cd03232 20 RQLLNNISGYVKP--GTLTALMGESGAGKTTLLDVLAGRKTAGV-----------ITGEILINGRPLD--K------NFQ 78 (192)
T ss_pred eEeEEccEEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------cceEEEECCEehH--H------Hhh
Confidence 3478999999999 99999999999999999999999863 5 8899999987652 0 000
Q ss_pred CCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHH
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSE 184 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~ 184 (225)
..+++++|....+...++...+ .+..+. ...+++.+ .+...++.+.+||||++||+..++.+++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSg--------Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~ 150 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALLRGLSV--------EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF 150 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHHhcCCH--------HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH
Confidence 1112211111000000000000 000110 11111111 12346778889999999999999999998
Q ss_pred hhhcC---Ce-EEEeecCChH-HHHHHHhccccccc-eEEe
Q psy2924 185 YRIHN---AD-ITLRYDATSD-DLIDVVEGNRIYVP-CIYL 219 (225)
Q Consensus 185 l~~~~---~~-vi~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 219 (225)
+.++. .+ ++++|+ .+ .+...++..+.+.. +.++
T Consensus 151 l~~~~~~~~tiiivtH~--~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 151 LKKLADSGQAILCTIHQ--PSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHHHHcCCEEEEEEcC--ChHHHHhhCCEEEEEcCCCeEE
Confidence 87653 33 333344 44 35566666665554 4443
No 262
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.75 E-value=5.9e-19 Score=162.04 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=105.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCc-----------
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGA----------- 96 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~----------- 96 (225)
.+.++..++++||++.+ |++++|+||||||||||+++|+|+. .| ++|.|.+++.
T Consensus 9 ~~~~~~~l~~is~~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----------~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 9 KFDGKEVLKNISFTIEE--GEVLGILGRSGAGKSVLMHVLRGMDQYEP-----------TSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred EECCeEeeeceeEEEcC--CCEEEEECCCCCCHHHHHHHHhhcccCCC-----------CceEEEEeccccccccccccc
Confidence 44455688999999999 9999999999999999999999996 56 8899988631
Q ss_pred ------------eEEE--EeCCCCC----CCccCCcchHHHH-HHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHh
Q psy2924 97 ------------KIQL--LDLPGII----EGAKDGKGRGRQV-IAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEG 152 (225)
Q Consensus 97 ------------~i~~--~d~~g~~----~~~~~~~~~~~~~-~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~ 152 (225)
++.. .+..... ...+..+++++|. ...+...++...+ .. .....+..+.+.++++.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEM 155 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1100 0000000 0001112222221 1111111100000 00 01111223457788889
Q ss_pred cccc--cCCCCCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHH
Q psy2924 153 FGLR--LNKEPPNID---------------------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDV 206 (225)
Q Consensus 153 ~~l~--~~~~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~ 206 (225)
+++. .++.+..|| +||||++||+..++.+++.+.++. ...++..+|..+.+...
T Consensus 156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 235 (520)
T TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235 (520)
T ss_pred cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 8883 455666677 999999999999999988887752 12233344555666667
Q ss_pred HhccccccceEEe
Q psy2924 207 VEGNRIYVPCIYL 219 (225)
Q Consensus 207 ~~~~~~~~~~~~~ 219 (225)
++..+.+..+.++
T Consensus 236 ~d~i~~l~~G~i~ 248 (520)
T TIGR03269 236 SDKAIWLENGEIK 248 (520)
T ss_pred cCEEEEEeCCEEe
Confidence 7766666555443
No 263
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=9.1e-19 Score=148.27 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=101.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-----cccccccceeeccceEEEEcCceEEEEeCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-----EVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-----~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~ 104 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+.. | ++|.|.++|.++...+.+
T Consensus 33 ~~~~~~il~~vsl~i~~--Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~-----------~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 33 WYGEDHALKNINLDIHE--NEVTAIIGPSGCGKSTYIKTLNRMVELVPSVK-----------TTGKILYRDQNIFDKSYS 99 (271)
T ss_pred EECCcceeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhccCCCCCC-----------CceeEEECCEEccccccc
Confidence 44455688999999999 99999999999999999999999986 4 789999999765321100
Q ss_pred CCCCCccCCcchHHHHHHHH-----hCCCeEEEEeeCCCccccHHHHHHHHHhccc------ccCCCCCccc--------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVA-----RTCSLIFIVLDVLKPLGHKKLIEHELEGFGL------RLNKEPPNID-------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l------~~~~~~~~ls-------- 165 (225)
....+..+++++|....+ ++..+.....+........+.+.+.++.+++ .+++.+..||
T Consensus 100 --~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 100 --VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred --HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 000111122222221111 1000000000000000111223444444321 1233333444
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++....+..+.++
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN 245 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998877632 23333455567777777766666555443
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=5.4e-19 Score=140.65 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=94.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+..| .+|+|.++|.++... + ...+..+
T Consensus 16 ~~l~~i~~~i~~--Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~---~~~~~~i 77 (178)
T cd03247 16 QVLKNLSLELKQ--GEKIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPVSDL--E---KALSSLI 77 (178)
T ss_pred cceEEEEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEHHHH--H---HHHHhhE
Confidence 478899999999 999999999999999999999999988 899999998754210 0 0001112
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC--C
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN--A 190 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~ 190 (225)
++++|....+. .++...+....+ ....+++.+ .+-..++.+.+||||++||+..++.+++.+.++. .
T Consensus 78 ~~~~q~~~~~~-~tv~~~i~~~LS--------~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~ 148 (178)
T cd03247 78 SVLNQRPYLFD-TTLRNNLGRRFS--------GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK 148 (178)
T ss_pred EEEccCCeeec-ccHHHhhcccCC--------HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC
Confidence 22222111110 000000000011 011122222 1234678888999999999999999999987763 2
Q ss_pred eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 191 DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 191 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++++ .+|..+.+ ..++..+.+..+.++
T Consensus 149 tii~-~sh~~~~~-~~~d~~~~l~~g~i~ 175 (178)
T cd03247 149 TLIW-ITHHLTGI-EHMDKILFLENGKII 175 (178)
T ss_pred EEEE-EecCHHHH-HhCCEEEEEECCEEE
Confidence 3333 33334444 346666555555544
No 265
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=4e-19 Score=164.38 Aligned_cols=177 Identities=15% Similarity=0.072 Sum_probs=107.3
Q ss_pred hhhccC-CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeC-
Q psy2924 27 ELITPK-GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDL- 103 (225)
Q Consensus 27 ~~~~~~-~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~- 103 (225)
....+. ++..++++||+|.+ |++++|+||||||||||+++|+|+..| ++|.|.+++ ..+.++..
T Consensus 12 l~~~y~~~~~il~~vs~~i~~--Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~ 78 (556)
T PRK11819 12 VSKVVPPKKQILKDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FEGEARPAPGIKVGYLPQE 78 (556)
T ss_pred EEEEeCCCCeeeeCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecC
Confidence 334555 56689999999999 999999999999999999999999988 899998864 34544321
Q ss_pred CCCCCCccCCcchHHHHHHH-------HhCC--CeEEE---E-------------eeCCCccccHHHHHHHHHhcccc-c
Q psy2924 104 PGIIEGAKDGKGRGRQVIAV-------ARTC--SLIFI---V-------------LDVLKPLGHKKLIEHELEGFGLR-L 157 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~-------~~~~--~~~l~---~-------------~d~~~~~~~~~~~~~~l~~~~l~-~ 157 (225)
+.+.... ............ +... ..... . ++........+.+.++++.+++. .
T Consensus 79 ~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 157 (556)
T PRK11819 79 PQLDPEK-TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW 157 (556)
T ss_pred CCCCCCC-cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcc
Confidence 2111100 000000000000 0000 00000 0 00000001123456677777762 3
Q ss_pred CCCCCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccce
Q psy2924 158 NKEPPNID---------------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 158 ~~~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
++.+..|| +||||++||+.++..+.+.+.++..+|+ ..+|..+.+...++..+...++
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tvi-iisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVV-AVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEE-EEeCCHHHHHhhcCeEEEEeCC
Confidence 44445555 9999999999999999999988765533 3555567777777766666555
Q ss_pred EE
Q psy2924 217 IY 218 (225)
Q Consensus 217 ~~ 218 (225)
.+
T Consensus 237 ~i 238 (556)
T PRK11819 237 RG 238 (556)
T ss_pred EE
Confidence 44
No 266
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.3e-18 Score=144.12 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=102.6
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||||||||+++|+|+..|... .+..|.|.++|.++...+.. ....
T Consensus 14 ~~~~~il~~~s~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~~--~~~~ 83 (251)
T PRK14249 14 YHKHQVLKNINMDFPE--RQITAIIGPSGCGKSTLLRALNRMNDIVSG------ARLEGAVLLDNENIYSPNLD--VVNL 83 (251)
T ss_pred ECCeeEecceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCcccc------CCcccEEEECCEEccccccC--hHHh
Confidence 3344578999999999 999999999999999999999999887110 01369999999765321100 0011
Q ss_pred cCCcchHHHHHHHHhCCCeE---EEEe--eCCCc-cccHHHHHHHHHhcccc------cCCCCCccc-------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLI---FIVL--DVLKP-LGHKKLIEHELEGFGLR------LNKEPPNID------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~---l~~~--d~~~~-~~~~~~~~~~l~~~~l~------~~~~~~~ls------------- 165 (225)
+..+++++|....+.. ++. .+.. ..... ....+.+.++++.+++. .++.+..||
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2223333332221111 110 0000 00010 11123344455555431 233444444
Q ss_pred --------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 --------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 --------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+....+.+
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeE
Confidence 9999999999999988888877632 2333345556666666666666544443
No 267
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.1e-19 Score=148.82 Aligned_cols=174 Identities=15% Similarity=0.089 Sum_probs=100.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..+... .+..|.|.++|.++...+.. . ..
T Consensus 29 ~~~~~~~l~~vs~~i~~--Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~l~~~~~~-~-~~ 98 (274)
T PRK14265 29 FYGGFLALVDVHLKIPA--KKIIAFIGPSGCGKSTLLRCFNRMNDLIPG------AKVEGRLLYRDRNIYDSQIN-S-VK 98 (274)
T ss_pred EeCCeEEEeeeeeEEcC--CCEEEEECCCCCCHHHHHHHHhcccccccC------CCcCceEEECCEecccccch-h-HH
Confidence 33445578999999999 999999999999999999999999753000 01479999999766421100 0 00
Q ss_pred ccCCcchHHHHHHHHhCCCeE---EEEeeCC-CccccHHHHHHHHHhcccc------cCCCCCccc--------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLI---FIVLDVL-KPLGHKKLIEHELEGFGLR------LNKEPPNID-------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---l~~~d~~-~~~~~~~~~~~~l~~~~l~------~~~~~~~ls-------------- 165 (225)
.+..+++++|....+.. ++. ....... ......+.+.++++.+++. .++.+..||
T Consensus 99 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11223333332111110 100 0000000 0001112234445544431 233333444
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhcccccc
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+..+..+.+.+.++.. ..++..+|..+.+...++..+++.
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999987642 234445556677777777766664
No 268
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=2.4e-19 Score=144.69 Aligned_cols=51 Identities=27% Similarity=0.287 Sum_probs=45.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
+... ++||++++ |++++|+|+||||||||+++|+|+.+| ++|.+.++|.++
T Consensus 14 ~~l~-~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i 64 (195)
T PRK13541 14 KNLF-DLSITFLP--SAITYIKGANGCGKSSLLRMIAGIMQP-----------SSGNIYYKNCNI 64 (195)
T ss_pred cEEE-EEEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCccc
Confidence 3344 49999999 999999999999999999999999988 899999999765
No 269
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.75 E-value=1.2e-18 Score=164.91 Aligned_cols=162 Identities=18% Similarity=0.109 Sum_probs=106.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+||++++ |+.++|+|+||||||||+|.|+|++.| .+|.|.++|.++..++... .+..+
T Consensus 467 ~vL~~isl~i~~--Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~----lr~~i 529 (686)
T TIGR03797 467 LILDDVSLQIEP--GEFVAIVGPSGSGKSTLLRLLLGFETP-----------ESGSVFYDGQDLAGLDVQA----VRRQL 529 (686)
T ss_pred cceeeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcCcCCHHH----HHhcc
Confidence 468899999999 999999999999999999999999999 9999999999887655322 22334
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~ 160 (225)
+++.|...++.. ++..++.-+ .+ ...+.+.++++..++. +-+.
T Consensus 530 ~~v~Q~~~lf~g-TI~eNi~~~-~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 530 GVVLQNGRLMSG-SIFENIAGG-AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEEccCCccCcc-cHHHHHhcC-CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 555554433321 111011001 11 1233445555554441 0123
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.+.+||||++||+.+.+.+++.+.....+ |+++|.. +....+|..++...+.++
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~---~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRL---STIRNADRIYVLDAGRVV 663 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecCh---HHHHcCCEEEEEECCEEE
Confidence 3444499999999999999999999887655 5566654 233445655555555444
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.75 E-value=8.8e-19 Score=158.02 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=116.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+|+||++.+ |+++||+|.+||||||+.++|+|+.++.. ....|.|.|+|+++...+....+......+
T Consensus 23 ~~v~~vsf~v~~--GE~lgIvGESGsGKSt~a~~i~gll~~~~-------~~~~G~I~~~g~dl~~l~~~~~r~~rg~~I 93 (539)
T COG1123 23 PAVRDVSFEVEP--GEILGIVGESGSGKSTLALALMGLLPEGG-------RITSGEVILDGRDLLGLSEREMRKLRGKRI 93 (539)
T ss_pred eeeecceEEecC--CcEEEEEcCCCCCHHHHHHHHhccCCCCC-------cccceEEEECCcchhcCCHHHHHHhccccE
Confidence 467899999999 99999999999999999999999998611 115799999998765444332222222334
Q ss_pred chHHHHHHHHhCCCe-E-------EEEeeCCCccccHHHHHHHHHhcccc--c--CCCCCccc-----------------
Q psy2924 115 GRGRQVIAVARTCSL-I-------FIVLDVLKPLGHKKLIEHELEGFGLR--L--NKEPPNID----------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~-~-------l~~~d~~~~~~~~~~~~~~l~~~~l~--~--~~~~~~ls----------------- 165 (225)
++++|.....-+.-. + +.........+..+++.++|+.+++. . ++.|+.||
T Consensus 94 a~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P 173 (539)
T COG1123 94 AMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP 173 (539)
T ss_pred EEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCC
Confidence 444444322222110 0 00001111344567788999999993 2 34788888
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC----e-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA----D-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~----~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||.+||+..++.|++.++.+.. . ++++|+ +.-+..++|...++..+.++
T Consensus 174 ~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD--l~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD--LGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC--HHHHHHhcCeEEEEECCEEE
Confidence 8999999999999999999988742 2 445554 45556667776666555554
No 271
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-18 Score=160.18 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=106.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeC-CCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDL-PGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~-~g~~ 107 (225)
++.++..++++||++.+ |++++|+||||||||||+++|+|+..| +.|.|.+++. .+.++.. +...
T Consensus 10 ~~~~~~il~~vsl~i~~--Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~~i~~~~q~~~~~ 76 (530)
T PRK15064 10 QFGAKPLFENISVKFGG--GNRYGLIGANGCGKSTFMKILGGDLEP-----------SAGNVSLDPNERLGKLRQDQFAF 76 (530)
T ss_pred EeCCcEeEeCCEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCcC
Confidence 45556689999999999 999999999999999999999999988 8999998863 3433221 1111
Q ss_pred CCccCCcchHH----HHH-------HHHhCCCeEEEE----------eeCCCccccHHHHHHHHHhcccc--c-CCCCCc
Q psy2924 108 EGAKDGKGRGR----QVI-------AVARTCSLIFIV----------LDVLKPLGHKKLIEHELEGFGLR--L-NKEPPN 163 (225)
Q Consensus 108 ~~~~~~~~~~~----~~~-------~~~~~~~~~l~~----------~d~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~ 163 (225)
.. ......+. ... ............ +...........+.++++.+++. . ++.+..
T Consensus 77 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 155 (530)
T PRK15064 77 EE-FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSE 155 (530)
T ss_pred CC-CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhh
Confidence 10 00000000 000 000000000000 00000011234566778888873 2 344556
Q ss_pred cc---------------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 164 ID---------------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 164 ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
|| +||||++||+..+..+.+.+.+.+.+|++ .+|..+.+...++..+....+.+
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiii-vsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMII-ISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEE-EeCCHHHHHhhcceEEEEeCCEE
Confidence 66 99999999999999999999875545333 44556677777777777766555
No 272
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.75 E-value=1.6e-18 Score=142.73 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=94.7
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHH
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVI 121 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~ 121 (225)
|++++ |++++|+|+||||||||+++|+|...| ++|.|.++|.++.. .+..+++++|..
T Consensus 1 l~i~~--Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---------~~~~i~~v~q~~ 58 (223)
T TIGR03771 1 LSADK--GELLGLLGPNGAGKTTLLRAILGLIPP-----------AKGTVKVAGASPGK---------GWRHIGYVPQRH 58 (223)
T ss_pred CccCC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCccchH---------hhCcEEEecccc
Confidence 46778 999999999999999999999999988 89999999976420 011122222221
Q ss_pred HHHhC--CCe---EE-------EEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 122 AVART--CSL---IF-------IVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 122 ~~~~~--~~~---~l-------~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
..+.. .++ +. .... .......+.+.++++.+++. .++.+..|| +
T Consensus 59 ~~~~~~~~tv~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llil 137 (223)
T TIGR03771 59 EFAWDFPISVAHTVMSGRTGHIGWLR-RPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLL 137 (223)
T ss_pred cccCCCCccHHHHHHhcccccccccc-CCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11000 000 00 0000 01112234567778888773 344455555 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+ .+.+
T Consensus 138 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i 190 (223)
T TIGR03771 138 DEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRV 190 (223)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEE
Confidence 999999999999999999887532 22333444456666666665555 4443
No 273
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.74 E-value=1.5e-18 Score=145.64 Aligned_cols=171 Identities=14% Similarity=0.069 Sum_probs=103.8
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++..++++||++.+ |++++|+|+||||||||+++|+|+..|.. .+++|.|.++|.++...+ ....
T Consensus 15 ~~~il~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~G~i~~~g~~i~~~~------~~~~ 79 (254)
T PRK10418 15 AQPLVHGVSLTLQR--GRVLALVGGSGSGKSLTCAAALGILPAGV-------RQTAGRVLLDGKPVAPCA------LRGR 79 (254)
T ss_pred ccceecceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-------CCcCCEEEECCeeccccc------cccc
Confidence 34578899999999 99999999999999999999999986410 115799999997764211 0011
Q ss_pred CcchHHHHHH-HHh-CCCeEEEE---eeCCCccccHHHHHHHHHhcccc-----cCCCCCccc-----------------
Q psy2924 113 GKGRGRQVIA-VAR-TCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID----------------- 165 (225)
Q Consensus 113 ~~~~~~~~~~-~~~-~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls----------------- 165 (225)
.+++++|... .+. ..++...+ ..........+.+.+.++.+++. +++.+..||
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 2233333211 000 00000000 00000011224566777777763 244445555
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+...++.......+.+
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999888887652 22333345556666677776655554444
No 274
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-18 Score=146.01 Aligned_cols=181 Identities=15% Similarity=0.025 Sum_probs=102.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++..++++||++.+ |++++|+|+||||||||+++|+|+..| +|++ +++|.|.++|.++...+.......
T Consensus 25 ~~~~~~vl~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~---~~sG~i~~~g~~~~~~~~~~~~~~ 96 (265)
T PRK14252 25 YYGGYQALKNINMMVHE--KQVTALIGPSGCGKSTFLRCFNRMHDL---YPGN---HYEGEIILHPDNVNILSPEVDPIE 96 (265)
T ss_pred EECCeeeeeeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcccCC---CCCC---CcccEEEEcCccccccccccCHHH
Confidence 34445688999999999 999999999999999999999999864 1111 257999998876532110000000
Q ss_pred ccCCcchHHHHHHHHhCCCe---EEEEe--eCCCc-cccHHHHHHHHHhcccc------cCC------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSL---IFIVL--DVLKP-LGHKKLIEHELEGFGLR------LNK------------------ 159 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~---~l~~~--d~~~~-~~~~~~~~~~l~~~~l~------~~~------------------ 159 (225)
.+..+++++|....+.. ++ +.... ..... ....+.+.+.++.+++. .++
T Consensus 97 ~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 97 VRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 11122222222111110 00 00000 00000 01112334444444331 122
Q ss_pred ---CCCcccccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 ---EPPNIDNQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ---~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.+..+.+||||++||+.+.+.+.+.+.++.. ..++..+|..+.+...++....+..+.++
T Consensus 176 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 176 LATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 3334449999999999999999998887642 22333455567777777776666555543
No 275
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.74 E-value=1.2e-18 Score=161.87 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=102.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |+.++|+|+||||||||+++|+|+++| .+|.|.++|.++..++... .+..++
T Consensus 358 il~~i~l~i~~--G~~~aIvG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~----~~~~i~ 420 (582)
T PRK11176 358 ALRNINFKIPA--GKTVALVGRSGSGKSTIANLLTRFYDI-----------DEGEILLDGHDLRDYTLAS----LRNQVA 420 (582)
T ss_pred cccCceEEeCC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCceEEECCEEhhhcCHHH----HHhhce
Confidence 67899999999 999999999999999999999999998 9999999998876544221 122334
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc-----c----C-------------------------CCC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR-----L----N-------------------------KEP 161 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~-----~----~-------------------------~~~ 161 (225)
+++|....+.. ++..++.-+.......+.+.+.++..++. + + +.+
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 44443332221 11111111111111234455555555431 0 1 122
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.+.+||||++||+.+...+++.+.... .+ |+++|+. .....+|..+....+.++
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~---~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL---STIEKADEILVVEDGEIV 557 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecch---HHHHhCCEEEEEECCEEE
Confidence 3333999999999999999999998763 34 5566654 334446655555554443
No 276
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.3e-18 Score=144.26 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=48.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
+...+++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.++|.++.
T Consensus 14 ~~~l~~i~~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~v~~~g~~~~ 66 (236)
T cd03253 14 RPVLKDVSFTIPA--GKKVAIVGPSGSGKSTILRLLFRFYDV-----------SSGSILIDGQDIR 66 (236)
T ss_pred CceeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEhh
Confidence 4478999999999 999999999999999999999999988 8999999997654
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=2.9e-18 Score=140.55 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=48.9
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.++.
T Consensus 14 ~~il~~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~ 66 (218)
T cd03290 14 LATLSNINIRIPT--GQLTMIVGQVGCGKSSLLLAILGEMQT-----------LEGKVHWSNKNES 66 (218)
T ss_pred CcceeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCcccc
Confidence 3578999999999 999999999999999999999999988 8999999987664
No 278
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-18 Score=145.99 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=98.7
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+..+...+++||++.+ |++++|+|+||||||||+++|+|+.. |. .+++|.|.++|.++...+.. .
T Consensus 14 ~~~~~~~l~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~i~~~g~~~~~~~~~--~ 81 (252)
T PRK14255 14 FYGKFEALKGIDLDFNQ--NEITALIGPSGCGKSTYLRTLNRMNDLIPG--------VTITGNVSLRGQNIYAPNED--V 81 (252)
T ss_pred EECCeeEEecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccCCC--------CCcccEEEEcCEEccccccc--H
Confidence 34445678999999999 99999999999999999999999864 20 01479999999765321100 0
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE---e--eC-CCccccHHHHHHHHHhcccc------cCCCCCccc----------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV---L--DV-LKPLGHKKLIEHELEGFGLR------LNKEPPNID---------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~--d~-~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls---------- 165 (225)
...+..+++++|....+. .++...+ . .. .......+.+.+.++.+++. .++.+..||
T Consensus 82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 001112222222111111 0100000 0 00 00000112334444444431 233344454
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+++.+.+.+.++.. ..++..+|..+.+...++..+.+..+.+
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999988877632 2223344445666666666555544444
No 279
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.5e-19 Score=141.74 Aligned_cols=154 Identities=20% Similarity=0.137 Sum_probs=101.9
Q ss_pred cCC-CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 31 PKG-GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 31 ~~~-~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
..+ +...+++|++|.. |++.+|+||||||||||.++|+|...- .++.|.|.++|+++...++ ...
T Consensus 13 v~~~keILkgvnL~v~~--GEvhaiMGPNGsGKSTLa~~i~G~p~Y---------~Vt~G~I~~~GedI~~l~~---~ER 78 (251)
T COG0396 13 VEGKKEILKGVNLTVKE--GEVHAIMGPNGSGKSTLAYTIMGHPKY---------EVTEGEILFDGEDILELSP---DER 78 (251)
T ss_pred ecCchhhhcCcceeEcC--CcEEEEECCCCCCHHHHHHHHhCCCCc---------eEecceEEECCcccccCCH---hHH
Confidence 344 4788999999999 999999999999999999999997641 1289999999999876543 345
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEe---eCCCc-----cccHHHHHHHHHhcccc---cCCCC-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVL---DVLKP-----LGHKKLIEHELEGFGLR---LNKEP----------------- 161 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~---d~~~~-----~~~~~~~~~~l~~~~l~---~~~~~----------------- 161 (225)
++.++.+.+|.+..++......++. ..... .+-.+.+.+.++.+++. +++..
T Consensus 79 Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 5666666666554443332211111 00000 11234566667777662 33332
Q ss_pred -----CcccccCCCCCCCHHHHHHHHHHhhhcCC---e-EEEeecC
Q psy2924 162 -----PNIDNQVPQSELDLDTVKTILSEYRIHNA---D-ITLRYDA 198 (225)
Q Consensus 162 -----~~lslDEp~~~LD~~~~~~i~~~l~~~~~---~-vi~~~~~ 198 (225)
....||||-||||.++.+.+-+.+..+.. . +++||..
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~ 204 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 22229999999999988877777666532 2 6677753
No 280
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=2.9e-17 Score=148.75 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=100.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++|.+......+++... .
T Consensus 38 ~IL~nVSfsI~~--GEivgIiGpNGSGKSTLLkiLaGLl~P-----------~sGeI~I~G~~~~i~~~~~l~~~----l 100 (549)
T PRK13545 38 YALNNISFEVPE--GEIVGIIGLNGSGKSTLSNLIAGVTMP-----------NKGTVDIKGSAALIAISSGLNGQ----L 100 (549)
T ss_pred eEEeeeEEEEeC--CCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeeeEEeccccCCC----C
Confidence 367899999999 999999999999999999999999988 89999999875321111111110 0
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQS 171 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~ 171 (225)
-+.+....... . ......+..+.+.++++.+++. .++.+..|| +||||+
T Consensus 101 -TV~EnL~l~~~------~-~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 101 -TGIENIELKGL------M-MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred -cHHHHHHhhhh------h-cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 01111111000 0 0111111223345566666652 344444454 999999
Q ss_pred CCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 172 ELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 172 ~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||+..+..+++.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 173 gLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 173 VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999888887653 123333445566777777776666555443
No 281
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=2.7e-17 Score=137.46 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=92.7
Q ss_pred CCCCCCceeec---cCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 36 GGPGEGFDVAK---TGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 36 ~~~~is~~i~~---~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
..+++++++.. ..|++++|+|+||||||||+++|+|+..| ++|.|.++|..+.++... ......
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~g~~i~~~~q~-~~~~~~- 75 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGDIEIELDTVSYKPQY-IKADYE- 75 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCceEEEeccc-ccCCCC-
Confidence 55677777762 12899999999999999999999999988 899999998766554311 000000
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCC---------------------CcccccCC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEP---------------------PNIDNQVP 169 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~---------------------~~lslDEp 169 (225)
.-+.+........ .. .......++++.+++. .++.+ ..+.+|||
T Consensus 76 --~tv~e~l~~~~~~---------~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEP 142 (246)
T cd03237 76 --GTVRDLLSSITKD---------FY--THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP 142 (246)
T ss_pred --CCHHHHHHHHhhh---------cc--ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1112211111000 00 0011233444555442 23333 44449999
Q ss_pred CCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccc
Q psy2924 170 QSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 170 ~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
|++||+..+..+.+.+.++. ...++..+|..+.+...++..+.+
T Consensus 143 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l 189 (246)
T cd03237 143 SAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189 (246)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999998888762 223333555566666667765555
No 282
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=1.5e-18 Score=145.72 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=92.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEE-----------EcCceEEEEeCC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIK-----------YKGAKIQLLDLP 104 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~-----------~~g~~i~~~d~~ 104 (225)
+.+++++ +.+ |++++|+||||||||||+++|+|++.| ++|.|. ++|.++......
T Consensus 16 ~l~~i~~-i~~--Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 16 KLHRLPV-PRE--GQVLGLVGPNGIGKSTALKILAGKLKP-----------NLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred hhhcCCC-CCC--CCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEeeccccchhhhhccCchhhhhhHH
Confidence 6788994 889 999999999999999999999999998 899996 445443211000
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
... ....++++.+....+.. .+...+.+........+.+.++++.+++. .++.+..||
T Consensus 82 -~~~-~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 82 -LLE-GDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred -hhh-cccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 000 00001111111100000 00000000001112234566777777772 334444444
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccc
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+.+.+.++. ..|++ .+|..+.+...++.....
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi-iSHd~~~~~~~ad~i~~l 212 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV-VEHDLAVLDYLSDYIHCL 212 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE-EECCHHHHHHhCCEEEEE
Confidence 999999999999888888887653 33333 444456666666655444
No 283
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-18 Score=148.95 Aligned_cols=171 Identities=15% Similarity=0.142 Sum_probs=99.8
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++.+ |++++|+|+||||||||+++|+|+..+. ++ .|++|.|.++|.++.....+ . ..
T Consensus 54 ~~~~~~iL~~is~~i~~--Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~---~~---~p~~G~I~i~g~~i~~~~~~-~-~~ 123 (305)
T PRK14264 54 YYGDDHALKGVSMDIPE--KSVTALIGPSGCGKSTFLRCLNRMNDRI---KA---ARIDGSVELDGQDIYQDGVN-L-VE 123 (305)
T ss_pred EeCCeeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcccccc---CC---CCCceEEEECCEEccccccc-H-HH
Confidence 34455688999999999 9999999999999999999999997520 00 01789999999765321100 0 00
Q ss_pred ccCCcchHHHHHHHH-----hCCCeEE---------EE--eeCCCc-cccHHHHHHHHHhcccc------cCCCCCccc-
Q psy2924 110 AKDGKGRGRQVIAVA-----RTCSLIF---------IV--LDVLKP-LGHKKLIEHELEGFGLR------LNKEPPNID- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~l---------~~--~d~~~~-~~~~~~~~~~l~~~~l~------~~~~~~~ls- 165 (225)
.+..+++++|...++ ++..+.. .. ...... ....+.+.++++.+++. .++.+..||
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 111222222221111 0000000 00 000010 11133455666666541 233344444
Q ss_pred --------------------ccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHHHHhcc
Q psy2924 166 --------------------NQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLIDVVEGN 210 (225)
Q Consensus 166 --------------------lDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~~~~~~ 210 (225)
+||||++||+..+..+.+.+.++... .++...|..+.+...++..
T Consensus 204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEE
Confidence 99999999999999999998876432 3344555566766777764
No 284
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.74 E-value=3.8e-17 Score=128.71 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=85.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~ 112 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+.+| .+|.|.+++. .+.++...... .
T Consensus 14 ~~~l~~i~l~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~i~~~~q~~~~---~- 76 (166)
T cd03223 14 RVLLKDLSFEIKP--GDRLLITGPSGTGKSSLFRALAGLWPW-----------GSGRIGMPEGEDLLFLPQRPYL---P- 76 (166)
T ss_pred CeeeecCeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCCceEEEECCCCcc---c-
Confidence 3578999999999 999999999999999999999999988 8999999873 34333211000 0
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCCe-
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNAD- 191 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~- 191 (225)
. . .+.++.... .....+. .+++++.= .. .+-..++.+.+||||++||+..++.+.+.+.+++.+
T Consensus 77 ~-~------tv~~nl~~~--~~~~LS~-G~~~rv~l-ar----al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ti 141 (166)
T cd03223 77 L-G------TLREQLIYP--WDDVLSG-GEQQRLAF-AR----LLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITV 141 (166)
T ss_pred c-c------cHHHHhhcc--CCCCCCH-HHHHHHHH-HH----HHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEE
Confidence 0 0 111111000 0011111 11122111 11 122367888899999999999999999999887655
Q ss_pred EEEeecC
Q psy2924 192 ITLRYDA 198 (225)
Q Consensus 192 vi~~~~~ 198 (225)
++++|+.
T Consensus 142 iivsh~~ 148 (166)
T cd03223 142 ISVGHRP 148 (166)
T ss_pred EEEeCCh
Confidence 4455554
No 285
>PLN03211 ABC transporter G-25; Provisional
Probab=99.73 E-value=6.4e-18 Score=158.71 Aligned_cols=170 Identities=17% Similarity=0.072 Sum_probs=105.1
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++|+++++ |++++|+||||||||||+++|+|...+. ..+|.|.++|+++.. .
T Consensus 76 ~~~~~~~iL~~vs~~i~~--Ge~~aI~GpnGaGKSTLL~iLaG~~~~~---------~~sG~I~inG~~~~~-~------ 137 (659)
T PLN03211 76 RQIQERTILNGVTGMASP--GEILAVLGPSGSGKSTLLNALAGRIQGN---------NFTGTILANNRKPTK-Q------ 137 (659)
T ss_pred ccCCCCeeeeCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCCC---------ceeEEEEECCEECch-h------
Confidence 345567799999999999 9999999999999999999999998761 148999999986531 0
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE-----ee---CCCccccHHHHHHHHHhcccc--c-----CCCCCccc--------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV-----LD---VLKPLGHKKLIEHELEGFGLR--L-----NKEPPNID-------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~d---~~~~~~~~~~~~~~l~~~~l~--~-----~~~~~~ls-------- 165 (225)
....++++.|....+...++...+ .. .....+..+.+.++++.+|+. . ++....||
T Consensus 138 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ 216 (659)
T PLN03211 138 -ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216 (659)
T ss_pred -hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHH
Confidence 011223333322222111110000 00 011112234577788888873 1 12223344
Q ss_pred -------------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEE-eecCChHHHHHHHhccccccceEE
Q psy2924 166 -------------NQVPQSELDLDTVKTILSEYRIHN---ADITL-RYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+...+.+.++++. .+|++ +|+. -.++....|..+....+.+
T Consensus 217 ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~-~~~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQP-SSRVYQMFDSVLVLSEGRC 285 (659)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCC-CHHHHHhhceEEEecCCcE
Confidence 999999999999999999988753 34433 3433 2245566665555544444
No 286
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=4.7e-17 Score=143.10 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=117.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC--CcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD--GKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~--~~~~~~~~~~~~~~ 126 (225)
..|+|||+||+|||||+|.|+|... .|+++||+|||+..|.+.|.+..+.++||+|+...... ...+..|...++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999877 69999999999999999999999999999999865433 33457788889999
Q ss_pred CCeEEEEeeCCCc-cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc-CC--eEEEeecCChHH
Q psy2924 127 CSLIFIVLDVLKP-LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH-NA--DITLRYDATSDD 202 (225)
Q Consensus 127 ~~~~l~~~d~~~~-~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~-~~--~vi~~~~~~~~~ 202 (225)
+|++++++|+... ....+.+.+.|... ..+.+.+-++.++.+.+... .+.+.-- .. .|...|+.++++
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvvNK~D~~~~e~~~--~efyslG~g~~~~ISA~Hg~Gi~d 155 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRS------KKPVILVVNKIDNLKAEELA--YEFYSLGFGEPVPISAEHGRGIGD 155 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEEcccCchhhhhH--HHHHhcCCCCceEeehhhccCHHH
Confidence 9999999999864 23344555666542 46777788888888543322 2222221 22 366777888888
Q ss_pred HHHHHhccc
Q psy2924 203 LIDVVEGNR 211 (225)
Q Consensus 203 ~~~~~~~~~ 211 (225)
+.+.+-..+
T Consensus 156 Lld~v~~~l 164 (444)
T COG1160 156 LLDAVLELL 164 (444)
T ss_pred HHHHHHhhc
Confidence 887766544
No 287
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=1e-18 Score=161.57 Aligned_cols=177 Identities=16% Similarity=0.108 Sum_probs=103.8
Q ss_pred hhccC-CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeC-C
Q psy2924 28 LITPK-GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDL-P 104 (225)
Q Consensus 28 ~~~~~-~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~-~ 104 (225)
..++. ++..++++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.+++ ..+.++.. +
T Consensus 11 s~~~~~~~~il~~is~~i~~--Ge~~~liG~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~~ 77 (552)
T TIGR03719 11 SKVVPPKKEILKDISLSFFP--GAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FNGEARPAPGIKVGYLPQEP 77 (552)
T ss_pred EEecCCCCeeecCceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccC
Confidence 34554 45689999999999 999999999999999999999999988 899998865 34444322 2
Q ss_pred CCCCCcc--CCcchHHHHHH--------H---HhCCCeE-----------EEEeeCCCccccHHHHHHHHHhcccc-cCC
Q psy2924 105 GIIEGAK--DGKGRGRQVIA--------V---ARTCSLI-----------FIVLDVLKPLGHKKLIEHELEGFGLR-LNK 159 (225)
Q Consensus 105 g~~~~~~--~~~~~~~~~~~--------~---~~~~~~~-----------l~~~d~~~~~~~~~~~~~~l~~~~l~-~~~ 159 (225)
.+..... ..+.+...... . +...+-- ...++..........+.++++.+++. .++
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 157 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccC
Confidence 2111000 00000000000 0 0000000 00000000000112344556666652 334
Q ss_pred CCCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 160 EPPNID---------------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 160 ~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.+..|| +||||++||+.+++.+.+.+.++...|++ .+|..+.+...++..+...++.+
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIi-isHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVA-VTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEE-EeCCHHHHHhhcCeEEEEECCEE
Confidence 444555 99999999999999999999887655333 44556666666776666655543
No 288
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.73 E-value=1.3e-18 Score=176.93 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=115.0
Q ss_pred hccCC--CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 29 ITPKG--GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 29 ~~~~~--~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
+.+++ +.+.+++||+|++ |+++||+|+||||||||+++|+|+..| ++|.|.++|.++.. +
T Consensus 1945 K~Y~~~~~~aL~~ISf~I~~--GEi~gLLG~NGAGKTTLlkmL~Gll~p-----------tsG~I~i~G~~i~~-~---- 2006 (2272)
T TIGR01257 1945 KVYSGTSSPAVDRLCVGVRP--GECFGLLGVNGAGKTTTFKMLTGDTTV-----------TSGDATVAGKSILT-N---- 2006 (2272)
T ss_pred EEECCCCceEEEeeEEEEcC--CcEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECcc-h----
Confidence 34543 4588999999999 999999999999999999999999998 99999999987631 1
Q ss_pred CCCccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
....+..+++.+|....+...++..++ +.+....+..+.+.++++.+++. .++.+..||
T Consensus 2007 ~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2007 ISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred HHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 011122344444432222221111000 01111122234566778888883 455555666
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.+.++.. ..++..+|.++++..+++....+..+.+
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999998877532 2445566778888888887666654443
No 289
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.73 E-value=9.6e-18 Score=130.25 Aligned_cols=92 Identities=32% Similarity=0.469 Sum_probs=71.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc-chHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK-GRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 129 (225)
.++++|.||||||||||+|+|....+++||++|+++..|.+.+.+.++.++|+||++....... ..+..........|+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 5899999999999999999999999999999999999999999999999999999876543322 222222233468999
Q ss_pred EEEEeeCCCcccc
Q psy2924 130 IFIVLDVLKPLGH 142 (225)
Q Consensus 130 ~l~~~d~~~~~~~ 142 (225)
++.++|+...++.
T Consensus 82 ii~VvDa~~l~r~ 94 (156)
T PF02421_consen 82 IIVVVDATNLERN 94 (156)
T ss_dssp EEEEEEGGGHHHH
T ss_pred EEEECCCCCHHHH
Confidence 9999999764433
No 290
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.73 E-value=1.5e-18 Score=161.63 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=103.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+||++++ |+.++|+|+||||||||++.|+|++.| .+|.|.++|.++..++... .+..
T Consensus 354 ~~il~~i~l~i~~--Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~----l~~~ 416 (592)
T PRK10790 354 NLVLQNINLSVPS--RGFVALVGHTGSGKSTLASLLMGYYPL-----------TEGEIRLDGRPLSSLSHSV----LRQG 416 (592)
T ss_pred CceeeceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEhhhCCHHH----HHhh
Confidence 3478899999999 999999999999999999999999999 9999999998876554322 1223
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
++++.|....+.. ++..++.-+. ....+.+.++++.+++. +-+
T Consensus 417 i~~v~Q~~~lF~~-Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 417 VAMVQQDPVVLAD-TFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred eEEEccCCccccc-hHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 3444444333321 1100000011 11223444555554441 012
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.++.+.+||||++||+.+.+.+.+.+..+. .+ |+++|.. .....+|..++..++.++
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~---~~l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRL---STIVEADTILVLHRGQAV 553 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecch---HHHHhCCEEEEEECCEEE
Confidence 233444999999999999999999988763 33 5566664 333345665555555544
No 291
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.1e-18 Score=153.44 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=98.0
Q ss_pred ccCCC-CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 30 TPKGG-GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 30 ~~~~~-~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
++.++ ...+++||++++ |+.++|+|+||||||||++.|+|+..| +.|+|.++|.+....+....
T Consensus 329 ~y~~g~~~l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~~-----------~~G~I~vng~~l~~l~~~~~-- 393 (559)
T COG4988 329 RYPDGKPALSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLAP-----------TQGEIRVNGIDLRDLSPEAW-- 393 (559)
T ss_pred ecCCCCcccCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCccccccCHHHH--
Confidence 44444 788999999999 999999999999999999999999999 99999999998876553222
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC----------------------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN---------------------------- 158 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~---------------------------- 158 (225)
+..+.++.|.+..+.. ++-.++.-+ .+...++.+.++++..++. ..
T Consensus 394 --~k~i~~v~Q~p~lf~g-TireNi~l~-~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 394 --RKQISWVSQNPYLFAG-TIRENILLA-RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred --HhHeeeeCCCCccccc-cHHHHhhcc-CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 1223333333322221 000111111 1112234455555555551 11
Q ss_pred ---CCCCcccccCCCCCCCHHHHHHHHHHhhhcCC--e-EEEeecC
Q psy2924 159 ---KEPPNIDNQVPQSELDLDTVKTILSEYRIHNA--D-ITLRYDA 198 (225)
Q Consensus 159 ---~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~-vi~~~~~ 198 (225)
.+.+.+.+||||++||.++.+.+++.+.++.+ + ++++|..
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl 515 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRL 515 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcCh
Confidence 12233339999999999999999999887643 3 6667763
No 292
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.73 E-value=2e-18 Score=163.90 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=105.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+||++++ |+.++|+|+||||||||+++|+|++.| ++|.|.++|.++..++... .+..
T Consensus 492 ~~vL~~isl~i~~--Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~----lr~~ 554 (710)
T TIGR03796 492 PPLIENFSLTLQP--GQRVALVGGSGSGKSTIAKLVAGLYQP-----------WSGEILFDGIPREEIPREV----LANS 554 (710)
T ss_pred CCcccceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEeHHHCCHHH----HHhh
Confidence 3478899999999 999999999999999999999999999 9999999998876544321 2233
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
++++.|...++.. ++..++.-. .+....+.+.++++..++. +-+
T Consensus 555 i~~v~Q~~~lf~g-Ti~eNi~l~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 555 VAMVDQDIFLFEG-TVRDNLTLW-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred eeEEecCChhhhc-cHHHHhhCC-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 4555554444321 111111001 1111233344444444331 012
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.++.+.+||||++||+.+.+.+++.+.....+ |+++|.. .....+|..++...+.++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl---~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRL---STIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCH---HHHHhCCEEEEEeCCEEE
Confidence 33444499999999999999999999886555 5555653 223345666666555544
No 293
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1e-17 Score=157.08 Aligned_cols=157 Identities=19% Similarity=0.225 Sum_probs=100.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~ 112 (225)
+..++++||+|.+ |++++|+||||||||||+++|+|...| ++|.|.+++ ..+.+++.... .....
T Consensus 325 ~~il~~isl~i~~--Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~igy~~Q~~~-~~l~~ 390 (638)
T PRK10636 325 RIILDSIKLNLVP--GSRIGLLGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYFAQHQL-EFLRA 390 (638)
T ss_pred eeeeccceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCCEEEEEecCcch-hhCCc
Confidence 3467889999999 999999999999999999999999988 899998863 34444332100 00000
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------ccC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------NQV 168 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------lDE 168 (225)
.. .....+.. ..+......+.++++.+++. .++++..|| +||
T Consensus 391 --~~--~~~~~~~~----------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 391 --DE--SPLQHLAR----------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred --cc--hHHHHHHH----------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00 00000000 00111233456667777662 344444555 999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 169 PQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 169 p~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
||++||+.++..+.+.+..+..+|++ .+|..+.+...++..+.+.++.++
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~~gtvi~-vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDFEGALVV-VSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999988655333 344455566666666666555443
No 294
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.73 E-value=1e-17 Score=154.92 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=100.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~ 112 (225)
+..++++||+|.+ |++++|+|+||||||||+++|+|+..| ++|.|.+++. .+.++.... .....
T Consensus 337 ~~~l~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~v~q~~--~~~~~ 401 (556)
T PRK11819 337 RLLIDDLSFSLPP--GGIVGIIGPNGAGKSTLFKMITGQEQP-----------DSGTIKIGETVKLAYVDQSR--DALDP 401 (556)
T ss_pred eeeecceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEeCch--hhcCC
Confidence 3468899999999 999999999999999999999999988 8999988542 233332110 00000
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------ccC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------NQV 168 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------lDE 168 (225)
... +.+....... ... .. ........+++.+++. .++.+..|| +||
T Consensus 402 ~~t-v~e~l~~~~~------~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 471 (556)
T PRK11819 402 NKT-VWEEISGGLD------IIK-VG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE 471 (556)
T ss_pred CCC-HHHHHHhhcc------ccc-cc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000 1111111000 000 00 0112344567777773 355566666 999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhcccccc
Q psy2924 169 PQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 169 p~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
||++||+.++..+.+.+..+...|+ ..+|..+.+...++..+...
T Consensus 472 Pt~~LD~~~~~~l~~~l~~~~~tvi-~vtHd~~~~~~~~d~i~~l~ 516 (556)
T PRK11819 472 PTNDLDVETLRALEEALLEFPGCAV-VISHDRWFLDRIATHILAFE 516 (556)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEE-EEECCHHHHHHhCCEEEEEE
Confidence 9999999999999999988755543 35555677777777666554
No 295
>KOG0057|consensus
Probab=99.73 E-value=1.8e-18 Score=154.27 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=101.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
++..+++||+|++ |+.+||+|+|||||||++|+|.++.. .+|.|.++|+++..++..++ ++.
T Consensus 365 ~~iL~gvsf~I~k--GekVaIvG~nGsGKSTilr~LlrF~d------------~sG~I~IdG~dik~~~~~Sl----R~~ 426 (591)
T KOG0057|consen 365 RKVLKGVSFTIPK--GEKVAIVGSNGSGKSTILRLLLRFFD------------YSGSILIDGQDIKEVSLESL----RQS 426 (591)
T ss_pred CceecceeEEecC--CCEEEEECCCCCCHHHHHHHHHHHhc------------cCCcEEECCeeHhhhChHHh----hhh
Confidence 3388999999999 99999999999999999999999986 68999999999987765433 345
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
+++++|...+|.+ +++-++..+. +....+.+.++.++.++. .-|
T Consensus 427 Ig~VPQd~~LFnd-TIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 427 IGVVPQDSVLFND-TILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred eeEeCCcccccch-hHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 6666665433322 1111122221 122234455555555441 113
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhc--CCe-EEEeecC
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIH--NAD-ITLRYDA 198 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~--~~~-vi~~~~~ 198 (225)
.++.+.+||||++||.++..++++.+... +.+ |.+.|++
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l 546 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRL 546 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 44555599999999999999999999873 234 6677876
No 296
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.73 E-value=3.5e-18 Score=160.52 Aligned_cols=145 Identities=21% Similarity=0.179 Sum_probs=97.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+|++|++ |+++||+|+||||||||+|.|+|++.| +.|.|.+||.++..+|... .++.+
T Consensus 487 ~vL~~isL~I~~--Ge~vaIvG~SGsGKSTL~KLL~gly~p-----------~~G~I~~dg~dl~~i~~~~----lR~~i 549 (709)
T COG2274 487 PVLEDLSLEIPP--GEKVAIVGRSGSGKSTLLKLLLGLYKP-----------QQGRILLDGVDLNDIDLAS----LRRQV 549 (709)
T ss_pred chhhceeEEeCC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEeHHhcCHHH----HHhhe
Confidence 356788999999 999999999999999999999999999 9999999999987776432 23445
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~ 160 (225)
+++.|...++... +..++. ...+....+.+.++++..|+. +-.+
T Consensus 550 g~V~Q~~~Lf~gS-I~eNi~-l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 550 GYVLQDPFLFSGS-IRENIA-LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred eEEcccchhhcCc-HHHHHh-cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 5555544333211 000000 001111112222222222220 2235
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecC
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDA 198 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~ 198 (225)
|+.|.+||||++||+.+.+.+.+.+.+.. .+ |+++|..
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 56666999999999999999999998875 45 6677764
No 297
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=6.5e-18 Score=141.24 Aligned_cols=178 Identities=15% Similarity=0.059 Sum_probs=101.2
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+|+||+|||||+++|+|+..+. | ..+++|.|.++|.++...+.. ....
T Consensus 13 ~~~~~~l~~~s~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~v~~~g~~i~~~~~~--~~~~ 82 (250)
T PRK14266 13 FDDAHILKNVNLDIPK--NSVTALIGPSGCGKSTFIRTLNRMNDLI---P---GFRHEGHIYLDGVDIYDPAVD--VVEL 82 (250)
T ss_pred eCCeEEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHhhhccC---C---CCCCccEEEECCEEccccccc--HHHH
Confidence 3345678999999999 9999999999999999999999986310 0 001679999999875421100 0001
Q ss_pred cCCcchHHHHHHHHh-----CCCeEEEEeeCCCccccHHHHHHHHHhcccc------cCCCCCccc--------------
Q psy2924 111 KDGKGRGRQVIAVAR-----TCSLIFIVLDVLKPLGHKKLIEHELEGFGLR------LNKEPPNID-------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~-----~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~------~~~~~~~ls-------------- 165 (225)
+..+++++|....+. +.................+.+.+.++.+++. .++....||
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 112233222211111 1100000000001111223455566666541 233344444
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.++..+.+.+.++.. ..++..+|..+.+...++...+...+.+
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 9999999999999999998887632 2333344456666666665544444433
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.72 E-value=8.6e-18 Score=153.28 Aligned_cols=172 Identities=16% Similarity=0.078 Sum_probs=106.1
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+.++...+++||++.+ |++++|+||||||||||+++|+|+.++ +++|.|.++|.++.. .......
T Consensus 270 ~~~~~il~~vsl~i~~--Ge~~~i~G~NGsGKSTLl~~l~G~~~~----------~~~G~i~~~g~~~~~---~~~~~~~ 334 (490)
T PRK10938 270 YNDRPILHNLSWQVNP--GEHWQIVGPNGAGKSTLLSLITGDHPQ----------GYSNDLTLFGRRRGS---GETIWDI 334 (490)
T ss_pred ECCeeEEeeceEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCc----------ccCCeEEEecccCCC---CCCHHHH
Confidence 3344578899999999 999999999999999999999997642 148999999875421 0000011
Q ss_pred cCCcchHHHHHHHHhCC--Ce---EEE-Eee---CC--CccccHHHHHHHHHhcccc---cCCCCCccc-----------
Q psy2924 111 KDGKGRGRQVIAVARTC--SL---IFI-VLD---VL--KPLGHKKLIEHELEGFGLR---LNKEPPNID----------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~--~~---~l~-~~d---~~--~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------- 165 (225)
+..++++.|....+... .+ +.. ..+ .. ......+.+.++++.+++. .++.+..||
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHH
Confidence 22345555543222111 00 000 011 00 0111234577888888883 345556677
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHH-HhccccccceE
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDV-VEGNRIYVPCI 217 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~-~~~~~~~~~~~ 217 (225)
+||||++||+.+++.+.+.+.++. ...++..+|..+.+... .+...++..+.
T Consensus 415 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~ 480 (490)
T PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGD 480 (490)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCc
Confidence 999999999999999999887763 22233344445666553 45555554443
No 299
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.72 E-value=2.5e-18 Score=159.34 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=104.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+|+||||||||+++|+|++.| .+|.|.++|.++..++... .+..+
T Consensus 346 ~il~~inl~i~~--G~~v~IvG~sGsGKSTLl~lL~gl~~~-----------~~G~I~i~g~~i~~~~~~~----~~~~i 408 (571)
T TIGR02203 346 PALDSISLVIEP--GETVALVGRSGSGKSTLVNLIPRFYEP-----------DSGQILLDGHDLADYTLAS----LRRQV 408 (571)
T ss_pred ccccCeeEEecC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEeHHhcCHHH----HHhhc
Confidence 357899999999 999999999999999999999999998 9999999998775443211 12234
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--c-------C-------------------------CC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--L-------N-------------------------KE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~-------~-------------------------~~ 160 (225)
++++|....+.. ++..++.-...+....+.+.+.++.+++. . + +.
T Consensus 409 ~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 409 ALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred eEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 444444333321 11111110110112234455555555441 0 0 12
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.+.+||||++||+.+.+.+++.+.+.. .+ |+++|+. .+...+|..+....+.++
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~---~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL---STIEKADRIVVMDDGRIV 546 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhh---HHHHhCCEEEEEeCCEEE
Confidence 23333999999999999999999988763 33 6667765 344556666665544443
No 300
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.72 E-value=2.4e-18 Score=160.05 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+||++++ |+.++|+|++|||||||++.|+|++ | ++|.|.++|.++..++... .+..
T Consensus 363 ~~vL~~i~l~i~~--G~~vaIvG~SGsGKSTL~~lL~g~~-p-----------~~G~I~i~g~~i~~~~~~~----lr~~ 424 (588)
T PRK11174 363 KTLAGPLNFTLPA--GQRIALVGPSGAGKTSLLNALLGFL-P-----------YQGSLKINGIELRELDPES----WRKH 424 (588)
T ss_pred CeeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCC-C-----------CCcEEEECCEecccCCHHH----HHhh
Confidence 3467889999999 9999999999999999999999999 8 8999999998876554322 2233
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
+++++|...++.. ++..++.-+. +....+.+.++++..++. +-+
T Consensus 425 i~~v~Q~~~LF~~-TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 425 LSWVGQNPQLPHG-TLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred eEEecCCCcCCCc-CHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 4555554433321 1111111111 111223344444443331 012
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.++.+.+||||++||+.+.+.+.+.+.++. .+ |+++|.. ......|..++...+.++
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl---~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQL---EDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCh---HHHHhCCEEEEEeCCeEe
Confidence 334444999999999999999999988763 33 5566654 233445555555544443
No 301
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.72 E-value=3e-18 Score=174.42 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=112.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+.+.+++||++.+ |++++|+|+||||||||+++|+|+..| ++|.+.++|.++.. + ....+..
T Consensus 943 k~aL~~lsl~I~~--Gei~aLLG~NGAGKSTLLkiLaGLl~P-----------tsG~I~i~G~dI~~-~----~~~~r~~ 1004 (2272)
T TIGR01257 943 RPAVDRLNITFYE--NQITAFLGHNGAGKTTTLSILTGLLPP-----------TSGTVLVGGKDIET-N----LDAVRQS 1004 (2272)
T ss_pred ceEEEeeEEEEcC--CcEEEEECCCCChHHHHHHHHhcCCCC-----------CceEEEECCEECcc-h----HHHHhhc
Confidence 4578999999999 999999999999999999999999998 99999999987632 1 0111222
Q ss_pred cchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------------- 165 (225)
+++.+|....+...++..++ ..+....+..+.+.++++.+++. .++.+..||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333322222221111000 01111122235577889998883 455666666
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.++++.. ..++..+|.++++..+.|.......+.+
T Consensus 1085 LDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138 (2272)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999887642 2344455667877777776666555444
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.72 E-value=1.3e-17 Score=154.12 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=100.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCC--CCCCCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLP--GIIEGA 110 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~--g~~~~~ 110 (225)
+..++++||+|.+ |++++|+||||||||||+++|+|+..| ++|.|.+++. .+.++... .+..
T Consensus 335 ~~~l~~isl~i~~--Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~-- 399 (552)
T TIGR03719 335 KLLIDDLSFKLPP--GGIVGVIGPNGAGKSTLFRMITGQEQP-----------DSGTIKIGETVKLAYVDQSRDALDP-- 399 (552)
T ss_pred eeeeccceEEEcC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEECCceEEEEEeCCccccCC--
Confidence 4477899999999 999999999999999999999999988 8999988542 24333221 0110
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------c
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------N 166 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------l 166 (225)
... +.+....... ... .. .......++++.+++. .++.+..|| +
T Consensus 400 --~~t-v~e~l~~~~~------~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 400 --NKT-VWEEISGGLD------IIQ-LG--KREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred --CCc-HHHHHHhhcc------ccc-cC--cchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 000 1111111100 000 00 0112344667777772 355556666 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhcccccc
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
||||++||+..++.+.+.+.++...|+ ..+|..+.+...++..+...
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~~~~vi-ivsHd~~~~~~~~d~i~~l~ 514 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEFAGCAV-VISHDRWFLDRIATHILAFE 514 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999998765533 35555677777777666664
No 303
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=151.83 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=99.0
Q ss_pred hhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeC-C
Q psy2924 27 ELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDL-P 104 (225)
Q Consensus 27 ~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~-~ 104 (225)
-..++..+.-+.+++|.+.+ |++|||||+|||||||||++|+|...| ++|.|...+ ..+..... +
T Consensus 9 ls~~~g~~~l~~~~~l~~~~--G~riGLvG~NGaGKSTLLkilaG~~~~-----------~~G~i~~~~~~~v~~l~Q~~ 75 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNP--GERIGLVGRNGAGKSTLLKILAGELEP-----------DSGEVTRPKGLRVGYLSQEP 75 (530)
T ss_pred eEEeeCCceeecCCcceeCC--CCEEEEECCCCCCHHHHHHHHcCCCcC-----------CCCeEeecCCceEEEeCCCC
Confidence 34567778899999999999 999999999999999999999999998 899998775 34544331 1
Q ss_pred CCCCCcc------CCcchHHHHHHHHhC-----CCeEEE-------EeeCCCccccHHHHHHHHHhccccc-CCCCCccc
Q psy2924 105 GIIEGAK------DGKGRGRQVIAVART-----CSLIFI-------VLDVLKPLGHKKLIEHELEGFGLRL-NKEPPNID 165 (225)
Q Consensus 105 g~~~~~~------~~~~~~~~~~~~~~~-----~~~~l~-------~~d~~~~~~~~~~~~~~l~~~~l~~-~~~~~~ls 165 (225)
....... .+.....+....+.. .+.... .............+..++..+|+.. +++...||
T Consensus 76 ~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LS 155 (530)
T COG0488 76 PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLS 155 (530)
T ss_pred CcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcC
Confidence 1110000 000000011100000 000000 0000000112234566677776632 44444555
Q ss_pred ---------------------ccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecC
Q psy2924 166 ---------------------NQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDA 198 (225)
Q Consensus 166 ---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~ 198 (225)
|||||++||.+++.++-+.+..+..+ |+++||.
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR 210 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDR 210 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 99999999999999999999887665 7788875
No 304
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.9e-17 Score=129.04 Aligned_cols=137 Identities=19% Similarity=0.182 Sum_probs=88.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..+++++|++.+ |+.++|+|+||+|||||+++|+|.+.+ ..|.+.+++.++...+ .
T Consensus 12 ~~~l~~~~~~i~~--g~~~~i~G~nGsGKStll~~l~g~~~~-----------~~G~i~~~~~~~~~~~----~------ 68 (157)
T cd00267 12 RTALDNVSLTLKA--GEIVALVGPNGSGKSTLLRAIAGLLKP-----------TSGEILIDGKDIAKLP----L------ 68 (157)
T ss_pred eeeEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccCC----H------
Confidence 3578899999999 999999999999999999999999988 8999999987653211 0
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC--e
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA--D 191 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~ 191 (225)
.+ .... +.++...... +.+++. +... +...++.+.+||||++||+.++..+.+.+.++.. .
T Consensus 69 ----~~---~~~~---i~~~~qlS~G--~~~r~~-l~~~----l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~ 131 (157)
T cd00267 69 ----EE---LRRR---IGYVPQLSGG--QRQRVA-LARA----LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131 (157)
T ss_pred ----HH---HHhc---eEEEeeCCHH--HHHHHH-HHHH----HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 00 0000 1111112211 122221 1111 1235778889999999999999998888876532 2
Q ss_pred EEEeecCChHHHHHHHhcc
Q psy2924 192 ITLRYDATSDDLIDVVEGN 210 (225)
Q Consensus 192 vi~~~~~~~~~~~~~~~~~ 210 (225)
.++..+|..+.+...++..
T Consensus 132 tii~~sh~~~~~~~~~d~i 150 (157)
T cd00267 132 TVIIVTHDPELAELAADRV 150 (157)
T ss_pred EEEEEeCCHHHHHHhCCEE
Confidence 3333444455555554543
No 305
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.71 E-value=4.5e-17 Score=137.57 Aligned_cols=86 Identities=34% Similarity=0.614 Sum_probs=77.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-----------------eEEEEeCCCCCCCccCCc
Q psy2924 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-----------------KIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 52 v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~~~~ 114 (225)
+||||.||||||||||+|++....+++|||||++|..|.+.+.+. .+.++|+||+...+..+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999999999999999999999988764 489999999998777777
Q ss_pred chHHHHHHHHhCCCeEEEEeeCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
+++.+++..++++|+++++++..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 88889999999999999999864
No 306
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=3.4e-17 Score=141.22 Aligned_cols=86 Identities=34% Similarity=0.580 Sum_probs=76.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE---------------------cC---ceEEEEeCCCCC
Q psy2924 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY---------------------KG---AKIQLLDLPGII 107 (225)
Q Consensus 52 v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~---------------------~g---~~i~~~d~~g~~ 107 (225)
++|+|.||+|||||+|++++....+++|||||++|..|...+ ++ .+++++|+||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999888999999999999998775 22 478999999998
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEEeeCC
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
..+..+.++..+++..++++|++++++|..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 777777778889999999999999999875
No 307
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.71 E-value=1.6e-16 Score=149.15 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=95.1
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~ 112 (225)
+..++++||+|.+ |++++|+||||||||||+++|+|...| ++|.|.++.. .+.+++... .....
T Consensus 332 ~~il~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~i~y~~q~~--~~l~~ 396 (635)
T PRK11147 332 KQLVKDFSAQVQR--GDKIALIGPNGCGKTTLLKLMLGQLQA-----------DSGRIHCGTKLEVAYFDQHR--AELDP 396 (635)
T ss_pred eEEEcCcEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCCcEEEEEeCcc--cccCC
Confidence 3467889999999 999999999999999999999999988 8999988321 344333210 00000
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------ccC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------NQV 168 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------lDE 168 (225)
... +.+...... . .... . .....+.++++.+++. .++++..|| +||
T Consensus 397 ~~t-v~e~l~~~~--~----~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE 466 (635)
T PRK11147 397 EKT-VMDNLAEGK--Q----EVMV-N--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE 466 (635)
T ss_pred CCC-HHHHHHhhc--c----cccc-c--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000 111111100 0 0000 0 1123455666666652 344444555 999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHHHHhcccccc
Q psy2924 169 PQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 169 p~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
||++||+.+...+.+.+..+..+ |+++|+ .+.+..+++..+.+.
T Consensus 467 Pt~~LD~~~~~~l~~~l~~~~~tvi~vSHd--~~~~~~~~d~i~~l~ 511 (635)
T PRK11147 467 PTNDLDVETLELLEELLDSYQGTVLLVSHD--RQFVDNTVTECWIFE 511 (635)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEECC--HHHHHHhcCEEEEEe
Confidence 99999999999999999887655 444444 445555555555543
No 308
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=7.2e-18 Score=143.01 Aligned_cols=161 Identities=18% Similarity=0.176 Sum_probs=96.9
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
....+++||+|.+ |++++|+|+||+|||||+++|+|+.. .+|.|.++|.++..++... .+..
T Consensus 17 ~~~l~~isl~I~~--Ge~~~IvG~nGsGKSTLl~~L~gl~~------------~~G~I~i~g~~i~~~~~~~----lr~~ 78 (275)
T cd03289 17 NAVLENISFSISP--GQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGDIQIDGVSWNSVPLQK----WRKA 78 (275)
T ss_pred CcceeceEEEEcC--CCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEhhhCCHHH----Hhhh
Confidence 3478999999999 99999999999999999999999984 4699999998764322111 1122
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCc-----------cc---------------
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPN-----------ID--------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~-----------ls--------------- 165 (225)
+++++|...++.. ++..++ +.... ...+.+.+.++.+++. .++.+.. ||
T Consensus 79 i~~v~q~~~lf~~-tv~~nl-~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 79 FGVIPQKVFIFSG-TFRKNL-DPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred EEEECCCcccchh-hHHHHh-hhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 3333332222210 110000 00000 1123455666666662 2222221 44
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.....+.+.+.+.. .+ |+++|+ .+.+. .++..+++..+.+
T Consensus 156 ~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~--~~~i~-~~dri~vl~~G~i 214 (275)
T cd03289 156 KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHR--IEAML-ECQRFLVIEENKV 214 (275)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECC--HHHHH-hCCEEEEecCCeE
Confidence 999999999999998888888643 34 334444 34443 3565555544444
No 309
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.2e-18 Score=146.43 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=103.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||+|.+ |++++|+|+||||||||+++|+|+..+.. ..|.+|.|.++|.++...+.+ . ...+..+
T Consensus 96 ~~L~~is~~I~~--Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~------~~p~~G~I~idG~~i~~~~~~-~-~~lr~~i 165 (329)
T PRK14257 96 HVLHDLNLDIKR--NKVTAFIGPSGCGKSTFLRNLNQLNDLIE------GTSHEGEIYFLGTNTRSKKIS-S-LELRTRI 165 (329)
T ss_pred eeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEccccccc-h-HhhhccE
Confidence 478999999999 99999999999999999999999985310 002689999999876421100 0 0112233
Q ss_pred chHHHHHHHHhCCCeEEEE-----eeCCCccc-cHHHHHHHHHhccc------ccCCCCCccc-----------------
Q psy2924 115 GRGRQVIAVARTCSLIFIV-----LDVLKPLG-HKKLIEHELEGFGL------RLNKEPPNID----------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~-----~d~~~~~~-~~~~~~~~l~~~~l------~~~~~~~~ls----------------- 165 (225)
++++|....+. .++..++ .+.....+ ..+.+..+++.+++ ..+.....||
T Consensus 166 ~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 166 GMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred EEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 44333322221 1110000 01110011 01123445555543 1233333444
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC-eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA-DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.....+.+.+..+.. ..++...|..+.+...++..+++..+.++
T Consensus 245 ~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999888888876642 23333455567777777777777665543
No 310
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.71 E-value=6.4e-18 Score=160.39 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=101.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+||++++ |+.++|+|+||||||||++.|+|++.| ++|.|.++|.++..++.... +..
T Consensus 487 ~~iL~~isl~i~~--G~~vaIvG~SGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~ 549 (708)
T TIGR01193 487 SNILSDISLTIKM--NSKTTIVGMSGSGKSTLAKLLVGFFQA-----------RSGEILLNGFSLKDIDRHTL----RQF 549 (708)
T ss_pred CcceeceeEEECC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCcEEEECCEEHHHcCHHHH----HHh
Confidence 3468899999999 999999999999999999999999999 99999999987765443221 223
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
++++.|...++.. ++..++.-+..+....+.+.++++..++. +-+
T Consensus 550 i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 550 INYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred eEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 3444443332221 11000100100111122333333333220 112
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC-Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN-AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~-~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.++.+.+||||++||+.+.+.+.+.+.... .+ |+++|.. .....+|..++...+.++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~---~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRL---SVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecch---HHHHcCCEEEEEECCEEE
Confidence 344455999999999999999999988753 34 5566664 233445555555554443
No 311
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.70 E-value=3.8e-18 Score=160.33 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=104.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||++.+ |++++|+|+||||||||+++|+|+++| ++|.+.++|.++...+.+......+..+
T Consensus 22 ~il~~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i 88 (648)
T PRK10535 22 EVLKGISLDIYA--GEMVAIVGASGSGKSTLMNILGCLDKP-----------TSGTYRVAGQDVATLDADALAQLRREHF 88 (648)
T ss_pred eeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEcCcCCHHHHHHHHhccE
Confidence 478899999999 999999999999999999999999988 8999999998654322110000001223
Q ss_pred chHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------c
Q psy2924 115 GRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------N 166 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------l 166 (225)
++++|...+++..++..++ .......+..+.+.++++.+++. .++.+..|| +
T Consensus 89 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLll 168 (648)
T PRK10535 89 GFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILA 168 (648)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333332222221110000 00111122234567778888773 344455555 9
Q ss_pred cCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 167 QVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
||||++||+.+++.+.+.+.++. .+ ++++|+ .+.+ ..++..+.+..+.+
T Consensus 169 DEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~--~~~~-~~~d~i~~l~~G~i 221 (648)
T PRK10535 169 DEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD--PQVA-AQAERVIEIRDGEI 221 (648)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCC--HHHH-HhCCEEEEEECCEE
Confidence 99999999999999998887753 23 334444 3433 34666655554444
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.70 E-value=1.3e-16 Score=130.49 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=90.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEE-EcCceEEEEeCCCCCCCccCCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIK-YKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~-~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..+++||++++ |++++|+||||||||||+++|+|+..| ++|.+. +++..+..-..+.+.. ..
T Consensus 2 vl~~vs~~i~~--Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~sG~i~~~~~~~~~~~~~~~l~~----~l 64 (213)
T PRK15177 2 VLDKTDFVMGY--HEHIGILAAPGSGKTTLTRLLCGLDAP-----------DEGDFIGLRGDALPLGANSFILP----GL 64 (213)
T ss_pred eeeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCCCEEEecCceeccccccccCC----cC
Confidence 46799999999 999999999999999999999999988 899986 7765432111111111 00
Q ss_pred chHHHHHHHHhCC-Ce--------EEEE--eeCCCccccHHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHHHHHH
Q psy2924 115 GRGRQVIAVARTC-SL--------IFIV--LDVLKPLGHKKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDTVKTI 181 (225)
Q Consensus 115 ~~~~~~~~~~~~~-~~--------~l~~--~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~~~~i 181 (225)
-+.+....+... .. +... ++.............+.+++.+ .+-..++.+.+|||++++|+.....+
T Consensus 65 -tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 65 -TGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred -cHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 011111111000 00 0000 0000000000000011111111 12235566679999999999998888
Q ss_pred HHHhhh-cC-CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 182 LSEYRI-HN-ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 182 ~~~l~~-~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.+.+.+ .. ..++ ..+|..+.+...++.......+.++
T Consensus 144 ~~~l~~~~~~~~ii-~vsH~~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 144 QAALACQLQQKGLI-VLTHNPRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred HHHHHHHhhCCcEE-EEECCHHHHHHhcCeeEEEECCeEE
Confidence 887643 22 2333 3445556666667766666555544
No 313
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.70 E-value=5.7e-18 Score=155.75 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=93.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+||++++ |+.++|+||+|||||||+|.|+|++.| ++|.|.++|.++..+ .. ..+..+
T Consensus 349 ~vL~~isl~i~~--G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~i~g~~i~~~-~~----~lr~~i 410 (529)
T TIGR02868 349 PVLDGVSLDLPP--GERVAILGPSGSGKSTLLMLLTGLLDP-----------LQGEVTLDGVSVSSL-QD----ELRRRI 410 (529)
T ss_pred ceeecceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhH-HH----HHHhhe
Confidence 368899999999 999999999999999999999999999 999999999877533 21 122334
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~ 160 (225)
++++|...++.. ++..++.-+ .+....+.+.++++..++. +-+.
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLG-RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred EEEccCcccccc-cHHHHHhcc-CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 555554433321 110001000 1111233344444444431 1123
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeec
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYD 197 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~ 197 (225)
++.+.+||||++||+++.+.+.+.+.+.. .+ |+++|.
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 44445999999999999999999998763 34 555664
No 314
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=3e-17 Score=133.26 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=45.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG 95 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g 95 (225)
..++++||++++ |++++|+|+||||||||+++|+|+..| ++|.|.++|
T Consensus 19 ~il~~~s~~i~~--G~~~~i~G~nG~GKSTLl~~i~G~~~~-----------~~G~i~~~g 66 (204)
T cd03250 19 FTLKDINLEVPK--GELVAIVGPVGSGKSSLLSALLGELEK-----------LSGSVSVPG 66 (204)
T ss_pred ceeeeeeEEECC--CCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCCeEEEcC
Confidence 478999999999 999999999999999999999999988 899999988
No 315
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.70 E-value=1.4e-16 Score=138.91 Aligned_cols=88 Identities=34% Similarity=0.610 Sum_probs=79.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-----------------eEEEEeCCCCCCCccC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-----------------KIQLLDLPGIIEGAKD 112 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~~ 112 (225)
..++|||.||||||||+|+|++....+++|||||++|..|.+.+.+. .+.++|+||+...+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 47999999999999999999999988999999999999999988763 5899999999877766
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
+.++..+++..++++|++++++|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 6778889999999999999999874
No 316
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.6e-16 Score=129.88 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=102.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCC-CCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP-GIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~ 112 (225)
..+.+|+||++.+ |+.+||||+||||||||++.|+|.++| ++|.+.++|.-..+++.. |+.... .
T Consensus 40 ~~aL~disf~i~~--Ge~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg~Gf~pel-T 105 (249)
T COG1134 40 FWALKDISFEIYK--GERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELGAGFDPEL-T 105 (249)
T ss_pred EEEecCceEEEeC--CCEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcccCCCccc-c
Confidence 4488999999999 999999999999999999999999999 999999999755444432 222110 0
Q ss_pred Ccch-HHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHh---------------------ccc--ccCCCCCcccccC
Q psy2924 113 GKGR-GRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEG---------------------FGL--RLNKEPPNIDNQV 168 (225)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~---------------------~~l--~~~~~~~~lslDE 168 (225)
++ .-+....+. +....+..+.+.++.+- +.+ .....|..|.+||
T Consensus 106 --GreNi~l~~~~~----------G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE 173 (249)
T COG1134 106 --GRENIYLRGLIL----------GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE 173 (249)
T ss_pred --hHHHHHHHHHHh----------CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence 10 000111111 11112222222222222 222 1233445555999
Q ss_pred CCCCCCHHHHHHHHHHhhhc-C-CeEEEeecCChHHHHHHHhccccccceEEec
Q psy2924 169 PQSELDLDTVKTILSEYRIH-N-ADITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 169 p~~~LD~~~~~~i~~~l~~~-~-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
-.+..|+..+++..+.+.++ . ..+++.-+|..+.+...|+..+.+..+.+..
T Consensus 174 vlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 174 VLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 99999999888877777665 1 2344445566678888888888776666543
No 317
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.70 E-value=1.1e-17 Score=158.49 Aligned_cols=162 Identities=19% Similarity=0.217 Sum_probs=104.5
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |+.++|+|+||||||||++.|+|++.| ++|.|.++|.++..++... .+..++
T Consensus 480 vL~~i~l~i~~--G~~iaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~l~~~~~~~----lr~~i~ 542 (694)
T TIGR03375 480 ALDNVSLTIRP--GEKVAIIGRIGSGKSTLLKLLLGLYQP-----------TEGSVLLDGVDIRQIDPAD----LRRNIG 542 (694)
T ss_pred ceeeeeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHH----HHhccE
Confidence 67789999999 999999999999999999999999999 9999999998876554322 223345
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCCC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKEP 161 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~~ 161 (225)
++.|....+.. ++..++.-+ .+....+.+.+.++..++. +-+.+
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALG-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred EECCChhhhhh-hHHHHHhCC-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 55554444321 111111101 1111223344444444331 11234
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.+.+||||++||+.+.+.+.+.+.+.. .+ |+++|.. .....+|..++...+.++
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl---~~~~~~D~iivl~~G~i~ 678 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRT---SLLDLVDRIIVMDNGRIV 678 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCH---HHHHhCCEEEEEeCCEEE
Confidence 4455999999999999999999998763 33 5666665 234456666666555544
No 318
>PTZ00258 GTP-binding protein; Provisional
Probab=99.70 E-value=7.5e-17 Score=141.93 Aligned_cols=89 Identities=26% Similarity=0.546 Sum_probs=79.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-----------------ceEEEEeCCCCCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-----------------AKIQLLDLPGIIEGAK 111 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 111 (225)
+-.++|||.||||||||||+|++....+++|||||++|..|.+.+.+ .++.++|+||+.....
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 66899999999999999999999998999999999999999998763 3589999999997776
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeCC
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
.+.++..+++..++++|++++++|..
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 66778889999999999999999874
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.70 E-value=3.4e-17 Score=151.23 Aligned_cols=160 Identities=13% Similarity=0.002 Sum_probs=103.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |+.++|+|+||||||||++.|+|+++| ++|.|.++|.++...+... .+..++
T Consensus 338 ~l~~i~~~i~~--G~~~aivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~ 400 (547)
T PRK10522 338 SVGPINLTIKR--GELLFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVTAEQPED----YRKLFS 400 (547)
T ss_pred EEecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCCCCHHH----HhhheE
Confidence 68899999999 999999999999999999999999998 9999999998765333211 122344
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------cCCCCCccccc
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------LNKEPPNIDNQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------~~~~~~~lslD 167 (225)
++.|....+... +.+.. .....+.+.+.++.+++. +-+.++.+.+|
T Consensus 401 ~v~q~~~lf~~t-----i~~n~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 401 AVFTDFHLFDQL-----LGPEG-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred EEecChhHHHHh-----hcccc-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 445544444321 01110 111223344455555442 11233344499
Q ss_pred CCCCCCCHHHHHHHHHHhhhc----CCe-EEEeecCChHHHHHHHhccccccceEEecc
Q psy2924 168 VPQSELDLDTVKTILSEYRIH----NAD-ITLRYDATSDDLIDVVEGNRIYVPCIYLLN 221 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~----~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
|||++||+.+.+.+.+.+... +.+ ++++|.. +....+|..++...+.++..
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~---~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD---HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech---HHHHhCCEEEEEECCEEEEe
Confidence 999999999988888777532 344 5566654 34556777666666665544
No 320
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.70 E-value=2e-17 Score=153.54 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=105.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++..++... .+..+
T Consensus 354 ~il~~i~~~i~~--G~~~aivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~i~g~~i~~~~~~~----~r~~i 416 (574)
T PRK11160 354 PVLKGLSLQIKA--GEKVALLGRTGCGKSTLLQLLTRAWDP-----------QQGEILLNGQPIADYSEAA----LRQAI 416 (574)
T ss_pred cceecceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHH----HHhhe
Confidence 368899999999 999999999999999999999999998 9999999998876554321 22334
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC-------------------------------CCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN-------------------------------KEP 161 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~-------------------------------~~~ 161 (225)
+++.|...++.. ++..++.-+ .+....+.+.++++.+++. .. +.+
T Consensus 417 ~~v~Q~~~lf~~-ti~~Ni~~~-~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 417 SVVSQRVHLFSA-TLRDNLLLA-APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred eEEcccchhhcc-cHHHHhhcC-CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 555555444432 111111101 1112334556666666552 11 122
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.+.+||||++||+.+.+.+.+.+.+.. .+ |+++|.. +. ...+|..++..++.++
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~--~~-~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL--TG-LEQFDRICVMDNGQII 552 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCh--hH-HHhCCEEEEEeCCeEE
Confidence 3333999999999999999999988763 33 5556654 22 2335655555554443
No 321
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.70 E-value=7.2e-17 Score=151.00 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=108.0
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++...+|+|+++++ |+.++|+|||||||||||++|+|...+. ...+|+|.++|.++...+ .+.
T Consensus 37 ~~~iL~~vs~~i~~--Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--------~~~~G~i~~~g~~~~~~~-------~~~ 99 (617)
T TIGR00955 37 RKHLLKNVSGVAKP--GELLAVMGSSGAGKTTLMNALAFRSPKG--------VKGSGSVLLNGMPIDAKE-------MRA 99 (617)
T ss_pred ccccccCCEEEEeC--CeEEEEECCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEECCHHH-------Hhh
Confidence 45689999999999 9999999999999999999999987650 014799999998653111 112
Q ss_pred CcchHHHHHHHHhCCCeEEEE-----ee---CCCccccHHHHHHHHHhcccc--cCCCCC------ccc-----------
Q psy2924 113 GKGRGRQVIAVARTCSLIFIV-----LD---VLKPLGHKKLIEHELEGFGLR--LNKEPP------NID----------- 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~-----~d---~~~~~~~~~~~~~~l~~~~l~--~~~~~~------~ls----------- 165 (225)
.++++.|....+...++...+ ++ .....+..+.+.++++.+++. .+..+. .+|
T Consensus 100 ~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~ 179 (617)
T TIGR00955 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179 (617)
T ss_pred hceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHH
Confidence 233333332222222211000 00 011122334677888888873 233332 255
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+||||++||+.+...+++.++++. .+++++...-..++.+..|..++...+.+++
T Consensus 180 aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 180 ELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred HHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 999999999999999999888763 3344433332356677777776666555543
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.70 E-value=1.3e-17 Score=144.47 Aligned_cols=170 Identities=19% Similarity=0.170 Sum_probs=119.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
-++.+++||++.+ |+.+||||.+|||||||-.+|+++..+ .|.|.|.|+++.-.+...++. .+..
T Consensus 300 ~~AVd~isl~L~~--gqTlGlVGESGSGKsTlG~allrL~~s------------~G~I~F~G~~i~~~~~~~mrp-lR~~ 364 (534)
T COG4172 300 LRAVDGISLTLRR--GQTLGLVGESGSGKSTLGLALLRLIPS------------QGEIRFDGQDIDGLSRKEMRP-LRRR 364 (534)
T ss_pred eEEeccceeEecC--CCeEEEEecCCCCcchHHHHHHhhcCc------------CceEEECCccccccChhhhhh-hhhh
Confidence 3467899999999 999999999999999999999999975 499999999887555333322 2222
Q ss_pred cchHHHHHHH--HhCCCe---E---EEEee-CCCccccHHHHHHHHHhcccc---cCCCCCccc----------------
Q psy2924 114 KGRGRQVIAV--ARTCSL---I---FIVLD-VLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------- 165 (225)
Q Consensus 114 ~~~~~~~~~~--~~~~~~---~---l~~~d-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------- 165 (225)
+..++|.++- -+..++ + +.+.. .....+..+++.+.|+.+|+. .++.|+++|
T Consensus 365 mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLk 444 (534)
T COG4172 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILK 444 (534)
T ss_pred ceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcC
Confidence 3333333211 111111 0 22222 112234456789999999993 778888888
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcCCe-----EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHNAD-----ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~~~-----vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+||||++||...+..++++++.+..+ ++|+||. .-+..+++.++++..+.+|.
T Consensus 445 P~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL--~VvrAl~~~viVm~~GkiVE 507 (534)
T COG4172 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL--AVVRALCHRVIVMRDGKIVE 507 (534)
T ss_pred CcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH--HHHHHhhceEEEEeCCEEee
Confidence 99999999999999999999887533 6666664 44556677777777776654
No 323
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=1.6e-17 Score=139.56 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
+..++++||++.+ |++++|+|+||||||||+++|+|+++| .+|.|.++|.++.
T Consensus 34 ~~il~~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~ 86 (257)
T cd03288 34 KPVLKHVKAYIKP--GQKVGICGRTGSGKSSLSLAFFRMVDI-----------FDGKIVIDGIDIS 86 (257)
T ss_pred CcceeEEEEEEcC--CCEEEEECCCCCCHHHHHHHHHcccCC-----------CCCeEEECCEEhh
Confidence 3578999999999 999999999999999999999999988 8999999997653
No 324
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=4.8e-17 Score=123.93 Aligned_cols=146 Identities=24% Similarity=0.283 Sum_probs=104.3
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR 116 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 116 (225)
..++||+|.+ |+++.|.||+|||||||+.-+.|.+.+- |+ .+|++.++++++.... ...+.+++
T Consensus 18 La~~n~Tia~--GeivtlMGPSGcGKSTLls~~~G~La~~----F~----~~G~~~l~~~~l~~lP------a~qRq~Gi 81 (213)
T COG4136 18 LANVNFTIAK--GEIVTLMGPSGCGKSTLLSWMIGALAGQ----FS----CTGELWLNEQRLDMLP------AAQRQIGI 81 (213)
T ss_pred EEeeeEEecC--CcEEEEECCCCccHHHHHHHHHhhcccC----cc----eeeEEEECCeeccccc------hhhhheee
Confidence 3478999999 9999999999999999999999988641 11 5799999999876533 23445677
Q ss_pred HHHHHHHHhCCCeEEEEeeCC----CccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCC
Q psy2924 117 GRQVIAVARTCSLIFIVLDVL----KPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVP 169 (225)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp 169 (225)
.+|...+|++..+--+++-+. .....+..+...+++.++. ..+.|..+| +|||
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 778777777766643322221 1233345677889998883 556666666 8999
Q ss_pred CCCCCHHHH----HHHHHHhhhcCC-eEEEeecC
Q psy2924 170 QSELDLDTV----KTILSEYRIHNA-DITLRYDA 198 (225)
Q Consensus 170 ~~~LD~~~~----~~i~~~l~~~~~-~vi~~~~~ 198 (225)
++.||...+ +.++...+..+. ++.++|++
T Consensus 162 FS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 162 FSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 999998654 455555655554 48888875
No 325
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=5.3e-16 Score=134.77 Aligned_cols=203 Identities=24% Similarity=0.251 Sum_probs=146.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcccccccc
Q psy2924 2 ARTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEF 81 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~ 81 (225)
.|+|+++..|-.+..++.||.+++++++.....+...--.-. +.+-..|+|+|..|||||||||.|++....+.+..|
T Consensus 147 ~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~--~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF 224 (411)
T COG2262 147 FRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRS--RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF 224 (411)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCCCeEEEEeeccccHHHHHHHHhccCeecccccc
Confidence 478999999999999999999999999977664433211111 111457999999999999999999999999999999
Q ss_pred ceeeccceEEEEc-CceEEEEeCCCCCCCccCCcchHHH-HHHHHhCCCeEEEEeeCCCcc--ccHHHHHHHHHhccccc
Q psy2924 82 TTLTTVPGCIKYK-GAKIQLLDLPGIIEGAKDGKGRGRQ-VIAVARTCSLIFIVLDVLKPL--GHKKLIEHELEGFGLRL 157 (225)
Q Consensus 82 tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~l~~ 157 (225)
+|.+|+.-.+.+. |..+.+-||-|+....+..+.-.++ .+.-...+|++++++|++++. +..+-+.+.|+.++..
T Consensus 225 ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~- 303 (411)
T COG2262 225 ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGAD- 303 (411)
T ss_pred ccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCC-
Confidence 9999999999887 5889999999998766543332222 234456799999999999872 2334567888888763
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHhhhcC-Ce--EEEeecCChHHHHHHHhcccc
Q psy2924 158 NKEPPNIDNQVPQSELDLDTVKTILSEYRIHN-AD--ITLRYDATSDDLIDVVEGNRI 212 (225)
Q Consensus 158 ~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~-~~--vi~~~~~~~~~~~~~~~~~~~ 212 (225)
.+|.+.+-++.+.+.... .+..+.... .. |...+..+++.+...+...+.
T Consensus 304 --~~p~i~v~NKiD~~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 304 --EIPIILVLNKIDLLEDEE---ILAELERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred --CCCEEEEEecccccCchh---hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 367777777777775544 222222222 23 334445688888777665444
No 326
>KOG1489|consensus
Probab=99.69 E-value=2.6e-16 Score=132.40 Aligned_cols=151 Identities=32% Similarity=0.516 Sum_probs=110.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce-EEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
-+++||-||||||||||+|+...+.|++|+|||..|.-|.+.+++.. ++..|.||+.+.+....++..+++..++.++.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 48999999999999999999999999999999999999999998754 99999999999999999999999999999999
Q ss_pred EEEEeeCCCc-----cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCH-HHHHHHHHHhhh-cCC-eEEEee---cC
Q psy2924 130 IFIVLDVLKP-----LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDL-DTVKTILSEYRI-HNA-DITLRY---DA 198 (225)
Q Consensus 130 ~l~~~d~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~-~~~~~i~~~l~~-~~~-~vi~~~---~~ 198 (225)
+++++|.... .++.+.+...++..+-.+..++..+. -++ +|. +..+..++.+.. +.. .|+..+ ..
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV-aNK---iD~~eae~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV-ANK---IDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE-Eec---cCchhHHHHHHHHHHHHcCCCcEEEeeecccc
Confidence 9999998654 33344455555555444444444333 222 332 444444444443 332 244434 44
Q ss_pred ChHHHHH
Q psy2924 199 TSDDLID 205 (225)
Q Consensus 199 ~~~~~~~ 205 (225)
+++++..
T Consensus 354 gl~~ll~ 360 (366)
T KOG1489|consen 354 GLEELLN 360 (366)
T ss_pred chHHHHH
Confidence 5555443
No 327
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.69 E-value=1.1e-17 Score=155.68 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |+.++|+|+||||||||++.|+|+++| .+|.|.++|.++..++... .+..+
T Consensus 349 ~iL~~inl~i~~--G~~v~IvG~sGsGKSTLl~lL~gl~~p-----------~~G~I~i~g~~i~~~~~~~----~r~~i 411 (588)
T PRK13657 349 QGVEDVSFEAKP--GQTVAIVGPTGAGKSTLINLLQRVFDP-----------QSGRILIDGTDIRTVTRAS----LRRNI 411 (588)
T ss_pred ceecceeEEECC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEhhhCCHHH----HHhhe
Confidence 368889999999 999999999999999999999999999 9999999998776544221 12233
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~ 160 (225)
++++|...++.. ++..++.-. .+....+.+.+.++.+++. +-+.
T Consensus 412 ~~v~Q~~~lf~~-Ti~~Ni~~~-~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 412 AVVFQDAGLFNR-SIEDNIRVG-RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred EEEecCcccccc-cHHHHHhcC-CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 444443333321 110000001 0111122333344433331 1123
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
++.+.+||||++||+.+.+.+++.+.... .+ ++++|+. .....+|..+....+.+
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~---~~~~~~D~ii~l~~G~i 547 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRL---STVRNADRILVFDNGRV 547 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecH---HHHHhCCEEEEEECCEE
Confidence 33444999999999999999999887752 34 6667765 23445665555544443
No 328
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1e-17 Score=129.09 Aligned_cols=154 Identities=15% Similarity=0.139 Sum_probs=110.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC--CCcc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII--EGAK 111 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~--~~~~ 111 (225)
--+..||+|+.+. |+.++++||+|+|||||++.|.-+..| .+|...+.|..+.+..+|+-. ...+
T Consensus 15 ~q~lfdi~l~~~~--getlvllgpsgagkssllr~lnlle~p-----------~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 15 HQALFDITLDCPE--GETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred chheeeeeecCCC--CCEEEEECCCCCchHHHHHHHHHHhCC-----------CCCeEEecccccccccCccHHHHHHHH
Confidence 3456689999999 999999999999999999999888878 899999998877765555421 1224
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeC------CCccccHHHHHHHHHhccc--ccCCCCCccc------------------
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDV------LKPLGHKKLIEHELEGFGL--RLNKEPPNID------------------ 165 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~------~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls------------------ 165 (225)
+..+|++|...++++.+++...+.+ ...++.+..+.++|+++.+ ..+++|-.||
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 4566776655555555444333322 2234455677888998877 2455554455
Q ss_pred ---ccCCCCCCCHHHHHHHHHHhhhcCCe----EEEeecCCh
Q psy2924 166 ---NQVPQSELDLDTVKTILSEYRIHNAD----ITLRYDATS 200 (225)
Q Consensus 166 ---lDEp~~~LD~~~~~~i~~~l~~~~~~----vi~~~~~~~ 200 (225)
.||||++|||+-...+.+.++++..+ |+++|+..+
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 89999999999888888888877532 888887543
No 329
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.69 E-value=2.4e-16 Score=139.70 Aligned_cols=171 Identities=28% Similarity=0.384 Sum_probs=114.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE---------------------c---CceEEEEeCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY---------------------K---GAKIQLLDLPGI 106 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~---------------------~---g~~i~~~d~~g~ 106 (225)
.++|||.||+|||||+|+|++....+++|||||++|..|.+.+ + ..+++++|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 5899999999999999999999888899999999999998763 1 245789999999
Q ss_pred CCCccCCcchHHHHHHHHhCCCeEEEEeeCCC---------------ccccHHHHHHHHHhcccc-cCCCCCccc-----
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK---------------PLGHKKLIEHELEGFGLR-LNKEPPNID----- 165 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---------------~~~~~~~~~~~l~~~~l~-~~~~~~~ls----- 165 (225)
...+..+.++..+++..++++|++++++|... +.++.+.+...|....+. ..+....+.
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~ 162 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQA 162 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 87776777888899999999999999998862 222344555555553221 111111111
Q ss_pred --------ccCCCC--CCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccc-cceEEeccCCCC
Q psy2924 166 --------NQVPQS--ELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIY-VPCIYLLNKIGE 225 (225)
Q Consensus 166 --------lDEp~~--~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 225 (225)
+.+..+ +++....++++ .+.+..+ -...++.+++..+....+.. +|++++.||+|+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~e~~v~~~L---~~~g~~~-~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~ 229 (396)
T PRK09602 163 EKFDIEEALAEQLSGLGINEEHVKEAL---RELGLPE-DPSKWTDEDLLELARELRKISKPMVIAANKADL 229 (396)
T ss_pred CCcchHHHHHHHHhhhccCHHHHHHHH---HHcCCcC-cccCCCHHHHHHHHHhhhhcCCCEEEEEEchhc
Confidence 111122 22333333333 3222221 12345667777666655554 999999999984
No 330
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=5.6e-16 Score=137.20 Aligned_cols=158 Identities=24% Similarity=0.401 Sum_probs=105.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
-|+|||.||||||||+|+|++....+++|||||+.|..|.+.+.+ +.+.++|+||+...+....++..++...++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 699999999999999999999988899999999999999998875 5699999999987666555666777778899999
Q ss_pred EEEEeeCCCc-----cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc-C--CeEEEeec---C
Q psy2924 130 IFIVLDVLKP-----LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH-N--ADITLRYD---A 198 (225)
Q Consensus 130 ~l~~~d~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~-~--~~vi~~~~---~ 198 (225)
+++++|.... .+....+.+.+....-.+. ..+.+.+-+..+-++.......++.+... . ..++.+|. .
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~-~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLA-EKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL 319 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhc-CCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence 9999987621 1111222233333211111 23444544555555544444444444322 2 23444443 4
Q ss_pred ChHHHHHHHhc
Q psy2924 199 TSDDLIDVVEG 209 (225)
Q Consensus 199 ~~~~~~~~~~~ 209 (225)
+++++...+..
T Consensus 320 GIdeLl~~I~~ 330 (390)
T PRK12298 320 GVKELCWDLMT 330 (390)
T ss_pred CHHHHHHHHHH
Confidence 67776555443
No 331
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.69 E-value=1.4e-17 Score=154.48 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |+.++|+|+||||||||+++|+|++.| .+|.|.++|.++..++... .+..++
T Consensus 355 iL~~inl~i~~--Ge~i~IvG~sGsGKSTLlklL~gl~~p-----------~~G~I~i~g~~i~~~~~~~----~~~~i~ 417 (576)
T TIGR02204 355 ALDGLNLTVRP--GETVALVGPSGAGKSTLFQLLLRFYDP-----------QSGRILLDGVDLRQLDPAE----LRARMA 417 (576)
T ss_pred cccceeEEecC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHH----HHHhce
Confidence 67899999999 999999999999999999999999998 9999999998776443221 112234
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc-------------cC---------------------CCC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR-------------LN---------------------KEP 161 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~-------------~~---------------------~~~ 161 (225)
+++|....+.. ++..++.-+ .+....+.+.+.++.+++. .. +.+
T Consensus 418 ~~~Q~~~lf~~-Ti~~Ni~~~-~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 418 LVPQDPVLFAA-SVMENIRYG-RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred EEccCCccccc-cHHHHHhcC-CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 44443332221 110000000 0111223344444444431 00 122
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.+.+||||++||+.+.+.+++.+.... .+ |+++|+. +.....|..+....+.++
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~---~~~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL---ATVLKADRIVVMDQGRIV 553 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecch---HHHHhCCEEEEEECCEEE
Confidence 3334999999999999998988888763 33 5566654 333446666665554443
No 332
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.69 E-value=2.3e-17 Score=156.57 Aligned_cols=163 Identities=13% Similarity=0.062 Sum_probs=99.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+||++++ |+.++|+||||||||||++.|+|+++| .+|.|.++|.++..++... .+..+
T Consensus 495 ~vL~~isl~i~~--Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~----lr~~i 557 (711)
T TIGR00958 495 PVLKGLTFTLHP--GEVVALVGPSGSGKSTVAALLQNLYQP-----------TGGQVLLDGVPLVQYDHHY----LHRQV 557 (711)
T ss_pred ccccCceEEEcC--CCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHH----HHhhc
Confidence 467899999999 999999999999999999999999999 9999999998876544221 12233
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~ 160 (225)
+++.|....+.. ++..++.-+. +....+.+.++++..++. +-+.
T Consensus 558 ~~v~Q~~~lF~g-TIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 558 ALVGQEPVLFSG-SVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred eEEecCcccccc-CHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 444443333221 1100010000 111123344444444331 1123
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.+.+||||++||++..+.+.+.......+ |+++|.. +.....|..++...+.++
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl---~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRL---STVERADQILVLKKGSVV 692 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccH---HHHHhCCEEEEEECCEEE
Confidence 3444499999999999888888722222234 5556654 234456666666555554
No 333
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.69 E-value=6.3e-17 Score=147.67 Aligned_cols=135 Identities=23% Similarity=0.282 Sum_probs=87.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccCC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~ 113 (225)
..++++||.+.+ |++|||+||||+|||||||.|+|...| .+|.|.+.. ..+.+++....... ..
T Consensus 336 ~l~~~~s~~i~~--g~riaiiG~NG~GKSTLlk~l~g~~~~-----------~~G~v~~g~~v~igyf~Q~~~~l~--~~ 400 (530)
T COG0488 336 LLLKDLSFRIDR--GDRIAIVGPNGAGKSTLLKLLAGELGP-----------LSGTVKVGETVKIGYFDQHRDELD--PD 400 (530)
T ss_pred eeecCceEEecC--CCEEEEECCCCCCHHHHHHHHhhhccc-----------CCceEEeCCceEEEEEEehhhhcC--cc
Confidence 456788999999 999999999999999999999999988 788887653 34444442110000 00
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc------------------------cCCCCCcccccCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR------------------------LNKEPPNIDNQVP 169 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~------------------------~~~~~~~lslDEp 169 (225)
... ...+. +.. +......+...|.++++. +...+..|.||||
T Consensus 401 ~t~----~d~l~---------~~~-~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 401 KTV----LEELS---------EGF-PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred CcH----HHHHH---------hhC-ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 000 00000 000 000022333444444331 1224555669999
Q ss_pred CCCCCHHHHHHHHHHhhhcCCe-EEEeecC
Q psy2924 170 QSELDLDTVKTILSEYRIHNAD-ITLRYDA 198 (225)
Q Consensus 170 ~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~ 198 (225)
|++||.++++.+.+.+..+..+ |+++||+
T Consensus 467 TNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr 496 (530)
T COG0488 467 TNHLDIESLEALEEALLDFEGTVLLVSHDR 496 (530)
T ss_pred CccCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 9999999999999999999877 6678875
No 334
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.68 E-value=1.7e-17 Score=152.63 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=94.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |+.++|+|+||||||||+|.|+|+++| .+|.|.++|.++..++... .+..+
T Consensus 336 ~il~~i~l~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~I~~~g~~i~~~~~~~----lr~~i 398 (529)
T TIGR02857 336 PALRPVSFTVPP--GERVALVGPSGAGKSTLLNLLLGFVDP-----------TEGSIAVNGVPLADADADS----WRDQI 398 (529)
T ss_pred ccccceeEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEehhhCCHHH----HHhhe
Confidence 368899999999 999999999999999999999999998 9999999998876544221 12234
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~ 160 (225)
+++.|....+.. ++..++.-+. +....+.+.+.++..++. +-+.
T Consensus 399 ~~v~Q~~~lf~~-ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 399 AWVPQHPFLFAG-TIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEEcCCCcccCc-CHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 444454433321 1111111000 111123344444444331 1123
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecC
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDA 198 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~ 198 (225)
++.+.+||||++||+.+.+.+++.+.... .+ ++++|+.
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRL 517 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 34444999999999999999999998763 33 5566664
No 335
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.5e-17 Score=144.75 Aligned_cols=145 Identities=21% Similarity=0.254 Sum_probs=96.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+|+||++.+ |++++|+|++|||||||+..|+|.+.| ++|+|.++|.++..++...+ +..+
T Consensus 352 ~~L~~~~l~l~~--GEkvAIlG~SGsGKSTllqLl~~~~~~-----------~~G~i~~~g~~~~~l~~~~~----~e~i 414 (573)
T COG4987 352 KALKNFNLTLAQ--GEKVAILGRSGSGKSTLLQLLAGAWDP-----------QQGSITLNGVEIASLDEQAL----RETI 414 (573)
T ss_pred chhhccceeecC--CCeEEEECCCCCCHHHHHHHHHhccCC-----------CCCeeeECCcChhhCChhhH----HHHH
Confidence 488999999999 999999999999999999999999998 99999999998876653211 1122
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--c-C-------------------------------CC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--L-N-------------------------------KE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~-~-------------------------------~~ 160 (225)
.+..|...+|.. ++--++. ..++....+.+.++++.+|+. . + +.
T Consensus 415 ~vl~Qr~hlF~~-Tlr~NL~-lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 415 SVLTQRVHLFSG-TLRDNLR-LANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhhccchHHHHH-HHHHHHh-hcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 222332222211 0000010 011222345667777777762 1 1 12
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecC
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDA 198 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~ 198 (225)
.|.+.+||||.+||+...+++++.+.+.. ++ ++++|..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 23333999999999999999999887643 34 6677763
No 336
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.6e-16 Score=123.85 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC-C--CCCCCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL-P--GIIEGA 110 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~-~--g~~~~~ 110 (225)
+.-|.++||++.+ |+.+.|.||||+||||||++|+|+.+| .+|.|.|++..+..... + .+..-.
T Consensus 15 ~~lf~~L~f~l~~--Ge~~~i~G~NG~GKTtLLRilaGLl~p-----------~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 15 RTLFSDLSFTLNA--GEALQITGPNGAGKTTLLRILAGLLRP-----------DAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred ceeecceeEEEcC--CCEEEEECCCCCcHHHHHHHHHcccCC-----------CCCeEEecCCCCccchhhHHHHHHHhh
Confidence 5678899999999 999999999999999999999999999 99999999887654210 0 000000
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
++ .+ .+..+.+++|..+.-.+ .. ......+.+.+..+|+. .+.+...|| +|
T Consensus 82 H~-~g-iK~eLTa~ENL~F~~~~---~~-~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLD 155 (209)
T COG4133 82 HQ-PG-IKTELTALENLHFWQRF---HG-SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILD 155 (209)
T ss_pred cc-cc-ccchhhHHHHHHHHHHH---hC-CCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeec
Confidence 00 00 01111122211100000 00 01234567777777773 455555666 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhc
Q psy2924 168 VPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~ 188 (225)
||+.+||......+-..+..-
T Consensus 156 EP~taLDk~g~a~l~~l~~~H 176 (209)
T COG4133 156 EPFTALDKEGVALLTALMAAH 176 (209)
T ss_pred CcccccCHHHHHHHHHHHHHH
Confidence 999999998888777777653
No 337
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.68 E-value=4.6e-17 Score=150.28 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=98.5
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |+.++|+|+||||||||+++|+|++.| .+|.|.++|.++...+... .+..+
T Consensus 332 ~~l~~~~~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~i~~~~~~~----~~~~i 394 (544)
T TIGR01842 332 PTLRGISFRLQA--GEALAIIGPSGSGKSTLARLIVGIWPP-----------TSGSVRLDGADLKQWDRET----FGKHI 394 (544)
T ss_pred cccccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEehhhCCHHH----Hhhhe
Confidence 468899999999 999999999999999999999999998 9999999998765433211 12233
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHH---------HHHHhc--ccc-----------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIE---------HELEGF--GLR-----------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---------~~l~~~--~l~-----------------------~~~~ 160 (225)
++++|....+.. ++..++.... +....+.+. +.++.+ |+. +-+.
T Consensus 395 ~~v~q~~~lf~~-ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 395 GYLPQDVELFPG-TVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred EEecCCcccccc-cHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 444443332221 1110010000 000111222 222222 110 1123
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.+.+||||++||+.+.+.+.+.+.++. .+ ++++|+. + ....+|..+....+.++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~--~-~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP--S-LLGCVDKILVLQDGRIA 532 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH--H-HHHhCCEEEEEECCEEE
Confidence 44455999999999999999999887752 34 4445553 2 34456666666554443
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=3e-17 Score=152.46 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=92.5
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR 116 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 116 (225)
++++||++.+ |++++|+|+||||||||+++|+|+..| ++|.|.++ ..+.++.. .... ... .-
T Consensus 355 l~~~s~~i~~--Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~-~~i~y~~Q--~~~~-~~~-~t 416 (590)
T PRK13409 355 LEVEGGEIYE--GEVIGIVGPNGIGKTTFAKLLAGVLKP-----------DEGEVDPE-LKISYKPQ--YIKP-DYD-GT 416 (590)
T ss_pred EEecceEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEe-eeEEEecc--cccC-CCC-Cc
Confidence 5677888899 999999999999999999999999988 89999875 33332211 0000 000 01
Q ss_pred HHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCCCC
Q psy2924 117 GRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQSEL 173 (225)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~~L 173 (225)
+.+...... .... ....+.++++.+++. .++.+..|| +||||++|
T Consensus 417 v~e~l~~~~---------~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~L 484 (590)
T PRK13409 417 VEDLLRSIT---------DDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHL 484 (590)
T ss_pred HHHHHHHHh---------hhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 112111110 0000 112345666676662 444555555 99999999
Q ss_pred CHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccc
Q psy2924 174 DLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 174 D~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
|+.++..+.+.++++. ...++..+|..+.+..+.+..+++
T Consensus 485 D~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 485 DVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999998762 222333444456666666766555
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=99.67 E-value=3.9e-17 Score=151.67 Aligned_cols=166 Identities=16% Similarity=0.124 Sum_probs=99.9
Q ss_pred hhccCC-CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEE-----------EcC
Q psy2924 28 LITPKG-GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIK-----------YKG 95 (225)
Q Consensus 28 ~~~~~~-~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~-----------~~g 95 (225)
.++|.+ +...++++ .+.+ |+++||+||||||||||+++|+|+..| +.|.|. ++|
T Consensus 80 ~~~yg~~~~~L~~l~-~i~~--Gev~gLvG~NGaGKSTLlkiL~G~l~p-----------~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 80 VHRYGVNGFKLYGLP-IPKE--GKVTGILGPNGIGKTTAVKILSGELIP-----------NLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred eEEecCCceeEecCC-cCCC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCccccCCCcHHHHHHHhCC
Confidence 345654 34788999 8889 999999999999999999999999988 889986 677
Q ss_pred ceEEEEeCC--CCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc------
Q psy2924 96 AKIQLLDLP--GIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------ 165 (225)
Q Consensus 96 ~~i~~~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------ 165 (225)
.+++..... ...........++.+....+.. + +.+........+.+.++++.+++. +++.+..||
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~-t----v~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG-K----VRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred hHHHHHHHHHhccCcceeecccchhhhhhhhcc-h----HHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 654311000 0000000001111121111100 0 000000011234566777777773 455555666
Q ss_pred ---------------ccCCCCCCCHHHHHHHHHHhhhc--CCeEEEeecCChHHHHHHHhccccc
Q psy2924 166 ---------------NQVPQSELDLDTVKTILSEYRIH--NADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ---------------lDEp~~~LD~~~~~~i~~~l~~~--~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+.+.+.++ +..|+ ..+|.++.+..+.+.....
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvI-ivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVL-VVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999888876 33433 3444456666666655444
No 340
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.67 E-value=1e-15 Score=133.92 Aligned_cols=198 Identities=21% Similarity=0.277 Sum_probs=128.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccc
Q psy2924 3 RTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFT 82 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~t 82 (225)
++|.++..+-.+++++.|+.+++++++.....+......- .+++...++|+|.+|||||||+|+|++....+.++|||
T Consensus 145 ~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r--~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~t 222 (351)
T TIGR03156 145 RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRR--KRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFA 222 (351)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcc
Confidence 5677776777788999999999999997776443322211 11225789999999999999999999987777899999
Q ss_pred eeeccceEEEE-cCceEEEEeCCCCCCCccCC-cchHHHHHHHHhCCCeEEEEeeCCCccc--cHHHHHHHHHhcccccC
Q psy2924 83 TLTTVPGCIKY-KGAKIQLLDLPGIIEGAKDG-KGRGRQVIAVARTCSLIFIVLDVLKPLG--HKKLIEHELEGFGLRLN 158 (225)
Q Consensus 83 t~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~l~~~ 158 (225)
|+++..+.+.+ ++.++.++||+|+....... ..........+.++|++++++|...+.. ....+.+.++.++.
T Consensus 223 T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--- 299 (351)
T TIGR03156 223 TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--- 299 (351)
T ss_pred ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc---
Confidence 99999999998 57899999999984322111 1111222345678999999999976532 12223455555432
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHhhhcCCe--EEEeecCChHHHHHHHh
Q psy2924 159 KEPPNIDNQVPQSELDLDTVKTILSEYRIHNAD--ITLRYDATSDDLIDVVE 208 (225)
Q Consensus 159 ~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~--vi~~~~~~~~~~~~~~~ 208 (225)
...+.+.+-++.+-.+......+. ...... +.+.++.+++++...+.
T Consensus 300 ~~~piIlV~NK~Dl~~~~~v~~~~---~~~~~~i~iSAktg~GI~eL~~~I~ 348 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEPRIERLE---EGYPEAVFVSAKTGEGLDLLLEAIA 348 (351)
T ss_pred CCCCEEEEEEeecCCChHhHHHHH---hCCCCEEEEEccCCCCHHHHHHHHH
Confidence 134555555555554433222111 111111 33333567888877654
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.67 E-value=1.7e-16 Score=146.93 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=102.9
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |+.++|+||||||||||++.|+|++.| ++|.|.++|.++...+.. ..+..++
T Consensus 357 ~l~~vs~~i~~--G~~~aivG~sGsGKSTl~~ll~g~~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~ 419 (555)
T TIGR01194 357 ALGPIDLRIAQ--GDIVFIVGENGCGKSTLAKLFCGLYIP-----------QEGEILLDGAAVSADSRD----DYRDLFS 419 (555)
T ss_pred eeccceEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH----HHHhhCc
Confidence 67889999999 999999999999999999999999998 999999999876543211 1122334
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC---------------------------CCCCcccc
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN---------------------------KEPPNIDN 166 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~---------------------------~~~~~lsl 166 (225)
++.|...++... +.+...+....+.+.+.++.+++. .. +.++.+.+
T Consensus 420 ~v~q~~~lf~~t-----i~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 420 AIFADFHLFDDL-----IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred EEccChhhhhhh-----hhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 444444444321 111111112234455666666552 11 22333339
Q ss_pred cCCCCCCCHHHHHHHHHHhh-h---cCCe-EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 167 QVPQSELDLDTVKTILSEYR-I---HNAD-ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~-~---~~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
||||++||+.+.+.+.+.+. . .+.+ ++++|+. +....+|..++...+.++.
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~---~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD---QYFELADQIIKLAAGCIVK 550 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH---HHHHhCCEEEEEECCEEEE
Confidence 99999999999988877542 2 2344 5555553 2445677777776666554
No 342
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=3.1e-15 Score=130.07 Aligned_cols=160 Identities=27% Similarity=0.400 Sum_probs=108.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE-cCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-|+|||.||||||||||+|++..+.+++|||||+.|..|.+.+ ++..+.++|+||+...+....++..++...++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 36999999999999999999998888999999999999999998 56789999999998777666677788888888999
Q ss_pred eEEEEeeCCCcc--ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHH-HHHHHHH-hhhcCCeEEEee---cCChH
Q psy2924 129 LIFIVLDVLKPL--GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDT-VKTILSE-YRIHNADITLRY---DATSD 201 (225)
Q Consensus 129 ~~l~~~d~~~~~--~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~-~~~i~~~-l~~~~~~vi~~~---~~~~~ 201 (225)
++++++|..... ++.+.+.+.++...-.+. ..+.+.+-++.+-++... .....+. +......++.+| ..+++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~-~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELA-DKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc-cCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999987532 222223333333211111 234555555555444322 1112222 233333444444 46788
Q ss_pred HHHHHHhcc
Q psy2924 202 DLIDVVEGN 210 (225)
Q Consensus 202 ~~~~~~~~~ 210 (225)
++...+...
T Consensus 318 eL~~~L~~~ 326 (335)
T PRK12299 318 ELLRALWEL 326 (335)
T ss_pred HHHHHHHHH
Confidence 887766543
No 343
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.6e-17 Score=126.36 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=106.5
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCC-----CCCCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG-----IIEGA 110 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g-----~~~~~ 110 (225)
.+.++||++.. |+++++=||+|+||||||++|.+-|.| ++|.|.+....-. +|... +..-.
T Consensus 26 V~~~vslsV~a--GECvvL~G~SG~GKStllr~LYaNY~~-----------d~G~I~v~H~g~~-vdl~~a~pr~vl~vR 91 (235)
T COG4778 26 VLRNVSLSVNA--GECVVLHGPSGSGKSTLLRSLYANYLP-----------DEGQILVRHEGEW-VDLVTAEPREVLEVR 91 (235)
T ss_pred eeeceeEEecC--ccEEEeeCCCCCcHHHHHHHHHhccCC-----------CCceEEEEeCcch-hhhhccChHHHHHHH
Confidence 56799999999 999999999999999999999999998 9999987643211 12111 11223
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEee-----CCCccccHHHHHHHHHhcccc---cCCCCCccc-----------------
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLD-----VLKPLGHKKLIEHELEGFGLR---LNKEPPNID----------------- 165 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d-----~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls----------------- 165 (225)
+..++|+.|++.+++....+..+.. +.........+..+|.++++. +.-.|..+|
T Consensus 92 r~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~ 171 (235)
T COG4778 92 RTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDY 171 (235)
T ss_pred HhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccC
Confidence 4568899999988877554322211 122233456678889999883 333343455
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcCC---e-EEEeecCC
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHNA---D-ITLRYDAT 199 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~~---~-vi~~~~~~ 199 (225)
+||||+.||..+++-+.+.+.+..+ . |-+-|+..
T Consensus 172 pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 172 PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred ceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 9999999999999999999877532 2 55677753
No 344
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.67 E-value=2.4e-17 Score=143.01 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=94.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEE
Q psy2924 54 FVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIV 133 (225)
Q Consensus 54 IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (225)
|+||||||||||+++|+|+..| ++|.|.++|.++.... ..+..+++++|....+...++..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~i~g~~i~~~~------~~~~~i~~v~q~~~l~~~~tv~enl 63 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-----------DSGSIMLDGEDVTNVP------PHLRHINMVFQSYALFPHMTVEENV 63 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCCC------HHHCCEEEEecCccccCCCcHHHHH
Confidence 5899999999999999999998 9999999998653211 0122344444433333222221000
Q ss_pred ---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCCCCCHHHHHHHHHHh
Q psy2924 134 ---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQSELDLDTVKTILSEY 185 (225)
Q Consensus 134 ---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l 185 (225)
.. ........+.+.++++.+++. .++.+..|| +||||++||+..++.+.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 64 AFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 00 111112234567788888883 455555666 99999999999999998888
Q ss_pred hhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 186 RIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 186 ~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.++. ...++..+|..+++..+++...++..+.+
T Consensus 144 ~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i 179 (325)
T TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKI 179 (325)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7653 12233345556777777777766655544
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=1.7e-15 Score=143.41 Aligned_cols=155 Identities=17% Similarity=0.268 Sum_probs=99.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccCCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~ 114 (225)
.++++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.+++. .+.++..... ... ..
T Consensus 524 il~~vsl~i~~--Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----------~~G~I~~~~~~~igyv~Q~~~-~~l--~~ 587 (718)
T PLN03073 524 LFKNLNFGIDL--DSRIAMVGPNGIGKSTILKLISGELQP-----------SSGTVFRSAKVRMAVFSQHHV-DGL--DL 587 (718)
T ss_pred eEeccEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCceEEECCceeEEEEecccc-ccC--Cc
Confidence 57889999999 999999999999999999999999988 8999987653 2333321100 000 00
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------ccCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------NQVPQ 170 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------lDEp~ 170 (225)
. .......... . +....+.+.++++.+++. .++++..|| +||||
T Consensus 588 ~-~~~~~~~~~~----------~-~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT 655 (718)
T PLN03073 588 S-SNPLLYMMRC----------F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655 (718)
T ss_pred c-hhHHHHHHHh----------c-CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0 0000000000 0 001123456677777763 344555566 99999
Q ss_pred CCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 171 SELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 171 ~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++||+.+++.+++.+..+..+|++ .+|..+.+...++..+....+.++
T Consensus 656 ~~LD~~s~~~l~~~L~~~~gtvIi-vSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 656 NHLDLDAVEALIQGLVLFQGGVLM-VSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEE-EECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999998876545333 334456666666766666555443
No 346
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.66 E-value=8.3e-17 Score=152.51 Aligned_cols=162 Identities=18% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |+.++|+|+||||||||+++|+|++.| .+|.|.++|.++..++.... +..++
T Consensus 472 il~~i~l~i~~--G~~vaivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~idg~~i~~~~~~~~----r~~i~ 534 (694)
T TIGR01846 472 VLSNLNLDIKP--GEFIGIVGPSGSGKSTLTKLLQRLYTP-----------QHGQVLVDGVDLAIADPAWL----RRQMG 534 (694)
T ss_pred ccccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEehhhCCHHHH----HHhCe
Confidence 67889999999 999999999999999999999999998 99999999998765543211 22233
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCCCC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNKEP 161 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~~~ 161 (225)
++.|...++.. ++..++.-. .+....+.+.++++..++. +-+.+
T Consensus 535 ~v~q~~~lf~~-ti~eNi~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 535 VVLQENVLFSR-SIRDNIALC-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred EEccCCeehhh-hHHHHHhcC-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 33333222211 110000000 1111122333333333320 11233
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.+.+||||++||+.+.+.+.+.+.+.. .+ |+++|.. +. ...+|..++...+.++
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~--~~-~~~~d~ii~l~~G~i~ 670 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRL--ST-VRACDRIIVLEKGQIA 670 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCCh--HH-HHhCCEEEEEeCCEEE
Confidence 4444999999999999999999998763 33 5555554 22 3346666666555544
No 347
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.66 E-value=6.1e-17 Score=150.23 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=48.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
...+++||++++ |+.++|+||||||||||+++|+|+++| ++|.|.++|.++..
T Consensus 329 ~~l~~i~~~i~~--G~~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~i~~~g~~~~~ 381 (569)
T PRK10789 329 PALENVNFTLKP--GQMLGICGPTGSGKSTLLSLIQRHFDV-----------SEGDIRFHDIPLTK 381 (569)
T ss_pred ccccCeeEEECC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEHhh
Confidence 368899999999 999999999999999999999999998 99999999987653
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=5.3e-17 Score=130.28 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=93.7
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
..+.+.+++|+++.. |+++.|+|.||||||||+|+|+|...| ++|.|.++|.+++.+... . ..
T Consensus 17 ~ek~~l~~~sL~I~~--g~FvtViGsNGAGKSTlln~iaG~l~~-----------t~G~I~Idg~dVtk~~~~---~-RA 79 (263)
T COG1101 17 LEKRALNGLSLEIAE--GDFVTVIGSNGAGKSTLLNAIAGDLKP-----------TSGQILIDGVDVTKKSVA---K-RA 79 (263)
T ss_pred hHHHHHhcCceeecC--CceEEEEcCCCccHHHHHHHhhCcccc-----------CCceEEECceecccCCHH---H-Hh
Confidence 346678899999999 999999999999999999999999998 999999999998764321 0 01
Q ss_pred CCcchHHHHHHH--HhCCCeEEE--EeeCC------C---ccccHHHHHHHHHhccc----ccCCCCCccc---------
Q psy2924 112 DGKGRGRQVIAV--ARTCSLIFI--VLDVL------K---PLGHKKLIEHELEGFGL----RLNKEPPNID--------- 165 (225)
Q Consensus 112 ~~~~~~~~~~~~--~~~~~~~l~--~~d~~------~---~~~~~~~~~~~l~~~~l----~~~~~~~~ls--------- 165 (225)
.-+.+++|.+.. +...++..+ +.+.+ . .....+...+.++.+++ .++.+...||
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 112223332211 011111001 00111 0 01223445566666655 2444444444
Q ss_pred ------------ccCCCCCCCHHHHHHHHHHhhhcC----C-eEEEeec
Q psy2924 166 ------------NQVPQSELDLDTVKTILSEYRIHN----A-DITLRYD 197 (225)
Q Consensus 166 ------------lDEp~~~LD~~~~~~i~~~l~~~~----~-~vi~~~~ 197 (225)
+||-|++|||...+.+++.=.+.. - +++++|+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn 208 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc
Confidence 999999999998888877654432 2 2666664
No 349
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.65 E-value=1.2e-16 Score=148.61 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=95.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |+.++|+|+||||||||+++|+|+++| .+|.|.++|.++...+... .+..+
T Consensus 349 ~~l~~i~~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i 411 (585)
T TIGR01192 349 QGVFDVSFEAKA--GQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILIDGIDINTVTRES----LRKSI 411 (585)
T ss_pred ccccceeEEEcC--CCEEEEECCCCCCHHHHHHHHccCCCC-----------CCCEEEECCEEhhhCCHHH----HHhhe
Confidence 367889999999 999999999999999999999999998 9999999998765433211 11223
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc-----------c-----------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL-----------R-----------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l-----------~-----------------------~~~~ 160 (225)
+++.|...++.. ++..++.... +....+.+.+.++..++ . +-+.
T Consensus 412 ~~v~q~~~lf~~-ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 412 ATVFQDAGLFNR-SIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred EEEccCCccCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 333333222210 1100000000 00011111111111111 0 1124
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
++.+.+||||++||+.+.+.+.+.+.+.. .+ |+++|+. +.+ ..+|..+....+.+
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~--~~~-~~~d~i~~l~~G~i 547 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL--STV-RNADLVLFLDQGRL 547 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCh--HHH-HcCCEEEEEECCEE
Confidence 44555999999999999999999887753 33 4455553 333 34665555544444
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.65 E-value=9.5e-17 Score=151.87 Aligned_cols=182 Identities=14% Similarity=-0.013 Sum_probs=104.2
Q ss_pred hhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 27 ELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 27 ~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
-..++.++..++++||+|.. |+++||||+|||||||||++|+|.... + .|..|.|.+.++.+...+..-.
T Consensus 183 ls~~y~~~~ll~~isl~i~~--Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g---~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 183 FSISVGGRDLIVDASVTLAF--GRHYGLVGRNGTGKTTFLRYMAMHAID-----G---IPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred EEEEeCCCEEEECCEEEECC--CCEEEEECCCCCCHHHHHHHHcCCCCC-----C---CCCCCEEEEEeccCCCCCCCHH
Confidence 33455556688999999999 999999999999999999999996410 0 1367888766554321110000
Q ss_pred ---CCCcc-------CCcchHHHHHHHHhC-CCeEEEEe--eCCCcc-------------------ccHHHHHHHHHhcc
Q psy2924 107 ---IEGAK-------DGKGRGRQVIAVART-CSLIFIVL--DVLKPL-------------------GHKKLIEHELEGFG 154 (225)
Q Consensus 107 ---~~~~~-------~~~~~~~~~~~~~~~-~~~~l~~~--d~~~~~-------------------~~~~~~~~~l~~~~ 154 (225)
..... ...++..|....... .....+.. ...... ....++..++..+|
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 00000 001111221111000 00000000 000000 11233455666677
Q ss_pred cc---cCCCCCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhcc
Q psy2924 155 LR---LNKEPPNID---------------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGN 210 (225)
Q Consensus 155 l~---~~~~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~ 210 (225)
+. .++.+..|| +||||++||+..+.++.+.+..+..++++ .+|..+.+...++..
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tvii-vsHd~~~l~~~~d~i 411 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIV-VSHAREFLNTVVTDI 411 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEE-EECCHHHHHHhCCEE
Confidence 62 344455566 99999999999999999999988666443 334456666777776
Q ss_pred ccccceEEe
Q psy2924 211 RIYVPCIYL 219 (225)
Q Consensus 211 ~~~~~~~~~ 219 (225)
+....+.+.
T Consensus 412 ~~l~~g~i~ 420 (718)
T PLN03073 412 LHLHGQKLV 420 (718)
T ss_pred EEEECCEEE
Confidence 666555543
No 351
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=127.87 Aligned_cols=136 Identities=29% Similarity=0.514 Sum_probs=109.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
-|++||-||||||||+++++...+.+++|||||..|.-|.+.+++ ..+...|.||+++.+..+.++..+++..++.+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 489999999999999999999999999999999999999999855 4588899999999999999999999999999999
Q ss_pred EEEEeeCCCc-----cccHHHHHHHHHhcccccCCCCCcccccCCCC-CCCHHHHHHHHHHhhh
Q psy2924 130 IFIVLDVLKP-----LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQS-ELDLDTVKTILSEYRI 187 (225)
Q Consensus 130 ~l~~~d~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~-~LD~~~~~~i~~~l~~ 187 (225)
+++++|.... .++.+.+...|+.++..+..++. +.+-++.+ -+|.+..+.+.+.+..
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~-ivv~NKiD~~~~~e~~~~~~~~l~~ 303 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPR-IVVLNKIDLPLDEEELEELKKALAE 303 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCce-EEEEeccCCCcCHHHHHHHHHHHHH
Confidence 9999987643 33445566777776655544444 34455555 4566666666666654
No 352
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=122.81 Aligned_cols=150 Identities=25% Similarity=0.328 Sum_probs=104.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhC-
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVART- 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~- 126 (225)
...+.|.|+||+|||||+++|++..+.+++|||||+...-|.+.+++..++.+||||+.+..-...- .-.|...++.+
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999999999875533221 22445555555
Q ss_pred CCeEEEEeeCCCc-----cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCCe----EEEeec
Q psy2924 127 CSLIFIVLDVLKP-----LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNAD----ITLRYD 197 (225)
Q Consensus 127 ~~~~l~~~d~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~----vi~~~~ 197 (225)
.+++++++|.+.. +.+.....++-..+ ..+.+.+-++.+..|.+..+++...+...... +....+
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKG 321 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeeh
Confidence 4568889887632 22333333333332 25666677888888877777666665443322 444455
Q ss_pred CChHHHH
Q psy2924 198 ATSDDLI 204 (225)
Q Consensus 198 ~~~~~~~ 204 (225)
...+.+.
T Consensus 322 ~~~d~~~ 328 (346)
T COG1084 322 CGLDKLR 328 (346)
T ss_pred hhHHHHH
Confidence 5555443
No 353
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=4.6e-17 Score=128.84 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=104.6
Q ss_pred hhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCC
Q psy2924 27 ELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPG 105 (225)
Q Consensus 27 ~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g 105 (225)
...++.+=++.+++||.+.+ |+.-+|||||||||||++-.|+|..+| +.|++.|+| .++...+.
T Consensus 11 vsVsF~GF~Aln~ls~~v~~--Gelr~lIGpNGAGKTT~mD~ItGKtrp-----------~~G~v~f~g~~dl~~~~e-- 75 (249)
T COG4674 11 VSVSFGGFKALNDLSFSVDP--GELRVLIGPNGAGKTTLMDVITGKTRP-----------QEGEVLFDGDTDLTKLPE-- 75 (249)
T ss_pred eEEEEcceeeeeeeEEEecC--CeEEEEECCCCCCceeeeeeecccCCC-----------CcceEEEcCchhhccCCH--
Confidence 34466777788999999999 999999999999999999999999999 999999998 66654432
Q ss_pred CCCCccCCcchHHHHHHHHhCCCeEEE----------E---eeCCCccccHHHHHHHHHhcccc----------------
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTCSLIFI----------V---LDVLKPLGHKKLIEHELEGFGLR---------------- 156 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~---~d~~~~~~~~~~~~~~l~~~~l~---------------- 156 (225)
+.-++.++++-+|.+.+|.+.++..+ + +..+...+..+++.++|...++.
T Consensus 76 -~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 76 -HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred -HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 12344566665665555544332211 0 00111123345677777777662
Q ss_pred -------cCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecC
Q psy2924 157 -------LNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDA 198 (225)
Q Consensus 157 -------~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~ 198 (225)
+.+.|..|.+|||++++...+....-++++.+. .-+++.|+.
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM 206 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDM 206 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccH
Confidence 223444555999999998776666666665553 335566664
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=9.7e-16 Score=121.76 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=82.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+..++++||++++ |++++|+||||||||||||++. + .+|.+.+.+.. .... +..
T Consensus 8 ~~~l~~isl~i~~--G~~~~l~G~nG~GKSTLl~~il----~-----------~~G~v~~~~~~-~~~~--------~~~ 61 (176)
T cd03238 8 VHNLQNLDVSIPL--NVLVVVTGVSGSGKSTLVNEGL----Y-----------ASGKARLISFL-PKFS--------RNK 61 (176)
T ss_pred eeeecceEEEEcC--CCEEEEECCCCCCHHHHHHHHh----h-----------cCCcEEECCcc-cccc--------ccc
Confidence 4578899999999 9999999999999999999985 2 46777766541 1100 111
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCC---ccccHHHHHHHHHhcccccCCC--CCcccccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLK---PLGHKKLIEHELEGFGLRLNKE--PPNIDNQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~---~~~~~~~~~~~l~~~~l~~~~~--~~~lslDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
+.+..| ...+....+-....+... ...+++++. +.. .+... +..+.+||||++||+...+.+.+.+.++
T Consensus 62 ~~~~~q-~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~-lar----al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 62 LIFIDQ-LQFLIDVGLGYLTLGQKLSTLSGGELQRVK-LAS----ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred EEEEhH-HHHHHHcCCCccccCCCcCcCCHHHHHHHH-HHH----HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 222333 222332222110011110 001111111 111 12235 6778899999999999999888888775
Q ss_pred ---CCe-EEEeecCChHHHHHHHhccccc
Q psy2924 189 ---NAD-ITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 189 ---~~~-vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+.. |+++|+ .+.+ ..++..+.+
T Consensus 136 ~~~g~tvIivSH~--~~~~-~~~d~i~~l 161 (176)
T cd03238 136 IDLGNTVILIEHN--LDVL-SSADWIIDF 161 (176)
T ss_pred HhCCCEEEEEeCC--HHHH-HhCCEEEEE
Confidence 234 344444 3433 345544444
No 355
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.64 E-value=1.1e-16 Score=148.57 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=99.0
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+||.+++ |+++||+||+|||||||+|.|++++.| ++|.|.++|.++..++...+ +..
T Consensus 342 ~~vl~~is~~i~~--Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----------~~G~I~idg~dI~~i~~~~l----r~~ 404 (567)
T COG1132 342 KPVLKDISFSIEP--GEKVAIVGPSGSGKSTLIKLLLRLYDP-----------TSGEILIDGIDIRDISLDSL----RKR 404 (567)
T ss_pred CccccCceEEEcC--CCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCEehhhcCHHHH----HHh
Confidence 4578899999999 999999999999999999999999998 99999999998876553222 222
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc-----------c-----------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL-----------R-----------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l-----------~-----------------------~~~ 159 (225)
+++++|...+|. .++..++.-+. +....+.+.++++..++ . +-+
T Consensus 405 I~~V~Qd~~LF~-~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 405 IGIVSQDPLLFS-GTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred ccEEcccceeec-ccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 333333322222 11100010011 10112233333333221 0 112
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
.++.+.+||||++||+.+.+.+.+.+.... .+ +++.|.. .-+.. .|..++...+.+
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl--sti~~-aD~IiVl~~G~i 541 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL--STIKN-ADRIIVLDNGRI 541 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH--hHHHh-CCEEEEEECCEE
Confidence 345555999999999999999999886542 23 5555553 22222 555555555443
No 356
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.64 E-value=3.7e-16 Score=133.03 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=46.8
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
++...+++||++.+ |++++|+|+||||||||+++|+|+++| .+|.|.++|.
T Consensus 49 ~~~vL~~vs~~i~~--Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----------~~G~I~i~g~ 99 (282)
T cd03291 49 GAPVLKNINLKIEK--GEMLAITGSTGSGKTSLLMLILGELEP-----------SEGKIKHSGR 99 (282)
T ss_pred cccceeeeeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCE
Confidence 35588899999999 999999999999999999999999988 8999998873
No 357
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.5e-15 Score=131.04 Aligned_cols=88 Identities=33% Similarity=0.625 Sum_probs=79.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC------------------ceEEEEeCCCCCCCcc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG------------------AKIQLLDLPGIIEGAK 111 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g------------------~~i~~~d~~g~~~~~~ 111 (225)
-.+||||.||+|||||||++|.....+++|||||.+|..|.+.+.. .++.++|.+|+.+.+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4689999999999999999999998889999999999999877532 3578899999999999
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeCC
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
.+.++..|++..++.+|++.++++..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 99999999999999999999998764
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=3.4e-16 Score=122.98 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=92.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
+.+.+||++++ |..++|||.||+|||||.++|+|...| ++|.|.++|+.+.+-|-. .....+.
T Consensus 28 AV~~vSFtL~~--~QTlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~----~R~k~IR 90 (267)
T COG4167 28 AVKPVSFTLRE--GQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYS----FRSKRIR 90 (267)
T ss_pred cccceEEEecC--CcEEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchH----hhhhhee
Confidence 45679999999 999999999999999999999999999 999999999988765521 1111222
Q ss_pred hHHHHHHHHhCC--------CeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 116 RGRQVIAVARTC--------SLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 116 ~~~~~~~~~~~~--------~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
|++|.+...-+. |.-+.......+....+.+.+-|+.+|+. .+..+..++
T Consensus 91 MiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i 170 (267)
T COG4167 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI 170 (267)
T ss_pred eeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE
Confidence 333322111111 11111111112233356688889999883 333343333
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
.||...+||...+..+++.+.++.
T Consensus 171 IIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 171 IIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred EEehhhhhhccHHHHHHHHHHHHHHH
Confidence 899999999999988888877653
No 359
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=1e-14 Score=131.96 Aligned_cols=160 Identities=26% Similarity=0.393 Sum_probs=108.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
-..|+|||.||||||||+|+|++..+.+++|||||++|..|.+.+.+..+.++|+||++..+....++..+++..++.++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 44799999999999999999999988899999999999999999999999999999998766666667777777888999
Q ss_pred eEEEEeeCCCc------cccHHHHHHHHHhcccc--------cCCCCCcccccCCCCCCCHHHHH-HHHHHhhhcCCeEE
Q psy2924 129 LIFIVLDVLKP------LGHKKLIEHELEGFGLR--------LNKEPPNIDNQVPQSELDLDTVK-TILSEYRIHNADIT 193 (225)
Q Consensus 129 ~~l~~~d~~~~------~~~~~~~~~~l~~~~l~--------~~~~~~~lslDEp~~~LD~~~~~-~i~~~l~~~~~~vi 193 (225)
++++++|.... ..+.+.+.+.|..+.-. .-...+.+.+-++.+-.+..... .+.+.+......++
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVF 318 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEE
Confidence 99999998642 11223333334332210 01123455555555544433322 22333433333444
Q ss_pred Eee---cCChHHHHHHHh
Q psy2924 194 LRY---DATSDDLIDVVE 208 (225)
Q Consensus 194 ~~~---~~~~~~~~~~~~ 208 (225)
.+| ..+++++...+.
T Consensus 319 ~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 319 EVSAASREGLRELSFALA 336 (500)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 444 457777755443
No 360
>PRK11058 GTPase HflX; Provisional
Probab=99.63 E-value=7e-15 Score=131.63 Aligned_cols=203 Identities=17% Similarity=0.137 Sum_probs=128.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcccccccc
Q psy2924 2 ARTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEF 81 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~ 81 (225)
.|+|+++..|-.+..++.++.+++++++.....+........ .. +-..++|+|.+|||||||+|+|++....++++||
T Consensus 152 ~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~-~~-~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~ 229 (426)
T PRK11058 152 LRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARI-KA-DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLF 229 (426)
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-hc-CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCC
Confidence 378999999999999999999999999977654332111111 11 1247999999999999999999998877889999
Q ss_pred ceeeccceEEEEcCc-eEEEEeCCCCCCCccCC-cchHHHHHHHHhCCCeEEEEeeCCCccc--cHHHHHHHHHhccccc
Q psy2924 82 TTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKDG-KGRGRQVIAVARTCSLIFIVLDVLKPLG--HKKLIEHELEGFGLRL 157 (225)
Q Consensus 82 tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~~~l~~ 157 (225)
||++++.+.+.+.+. .+.++||+|+....... ..........+..+|++++++|...+.. ....+.+.++.++.
T Consensus 230 tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~-- 307 (426)
T PRK11058 230 ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA-- 307 (426)
T ss_pred CCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--
Confidence 999999999988775 78899999985431111 1111122344578999999999976532 12223445554431
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHhh-hcCCe--EEEeecCChHHHHHHHhccc
Q psy2924 158 NKEPPNIDNQVPQSELDLDTVKTILSEYR-IHNAD--ITLRYDATSDDLIDVVEGNR 211 (225)
Q Consensus 158 ~~~~~~lslDEp~~~LD~~~~~~i~~~l~-~~~~~--vi~~~~~~~~~~~~~~~~~~ 211 (225)
...+.+.+-++++-.+.... .+ +... ..... +....+.+++++.+.+...+
T Consensus 308 -~~~pvIiV~NKiDL~~~~~~-~~-~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 308 -HEIPTLLVMNKIDMLDDFEP-RI-DRDEENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred -CCCCEEEEEEcccCCCchhH-HH-HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 23455554455444332111 11 1111 11111 22333457888877665543
No 361
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.62 E-value=1.6e-14 Score=125.44 Aligned_cols=158 Identities=27% Similarity=0.468 Sum_probs=108.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-|+|||.||||||||+|+|++....+++|||||+.|..|.+.+++ ..+.++|+||+...+....++..++...++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 4699999999999999999999887899999999999999999987 889999999998766665566777777788899
Q ss_pred eEEEEeeCCCc-----cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhh-cCCeEEEee---cCC
Q psy2924 129 LIFIVLDVLKP-----LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRI-HNADITLRY---DAT 199 (225)
Q Consensus 129 ~~l~~~d~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~-~~~~vi~~~---~~~ 199 (225)
++++++|.... .+..+.+.+.+..+.-.+. ..+.+.+-++.+-++....+.+.+.+.+ ....++.+| ..+
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~-~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELA-EKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhc-cCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 99999998643 1111222233333211111 2344444455554554444555555543 233444444 356
Q ss_pred hHHHHHHHh
Q psy2924 200 SDDLIDVVE 208 (225)
Q Consensus 200 ~~~~~~~~~ 208 (225)
++++...+.
T Consensus 317 I~eL~~~I~ 325 (329)
T TIGR02729 317 LDELLYALA 325 (329)
T ss_pred HHHHHHHHH
Confidence 788776654
No 362
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.62 E-value=3.1e-16 Score=147.66 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=84.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeC-CCCCCCccC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDL-PGIIEGAKD 112 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~ 112 (225)
...+++||++++ |+.++|+||||||||||+++|+|++++ ..|.+.+++. .+..+.. |.+..
T Consensus 466 ~il~~isl~i~~--Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----------~~G~i~~~~~~~i~~v~Q~~~l~~---- 528 (659)
T TIGR00954 466 VLIESLSFEVPS--GNHLLICGPNGCGKSSLFRILGELWPV-----------YGGRLTKPAKGKLFYVPQRPYMTL---- 528 (659)
T ss_pred eeeecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEeecCCCcEEEECCCCCCCC----
Confidence 578899999999 999999999999999999999999987 7888877643 2333221 11100
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC------------------------------CC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN------------------------------KE 160 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~------------------------------~~ 160 (225)
. -+.+....... ..+...+....+.+.++++.+++. .+ ..
T Consensus 529 ~--tv~eni~~~~~------~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~ 600 (659)
T TIGR00954 529 G--TLRDQIIYPDS------SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600 (659)
T ss_pred c--CHHHHHhcCCC------hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcC
Confidence 0 01111100000 000000001123344455555441 11 12
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecC
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDA 198 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~ 198 (225)
|+.+.+||||++||+...+.+.+.+.+.+.+ ++++|+.
T Consensus 601 p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~ 639 (659)
T TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK 639 (659)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCch
Confidence 3333399999999999999999999887655 4455554
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.62 E-value=6e-16 Score=155.50 Aligned_cols=163 Identities=15% Similarity=0.047 Sum_probs=96.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+|+++.+ |++++|+||||||||||+|+|+|...+ ..+++|.|.++|+++.. + .+..
T Consensus 776 ~~iL~~vs~~i~~--Ge~~aI~G~sGaGKSTLL~~Lag~~~~--------g~~~~G~I~i~G~~~~~-~-------~~~~ 837 (1394)
T TIGR00956 776 RVILNNVDGWVKP--GTLTALMGASGAGKTTLLNVLAERVTT--------GVITGGDRLVNGRPLDS-S-------FQRS 837 (1394)
T ss_pred cEeeeCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCC--------CCcceeEEEECCEECCh-h-------hhcc
Confidence 4578899999999 999999999999999999999999861 01278999999987521 0 1112
Q ss_pred cchHHHHHHHHhCCCeEEE------Ee--eCCCccccHHHHHHHHHhcccc--cCC------------------------
Q psy2924 114 KGRGRQVIAVARTCSLIFI------VL--DVLKPLGHKKLIEHELEGFGLR--LNK------------------------ 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~------~~--d~~~~~~~~~~~~~~l~~~~l~--~~~------------------------ 159 (225)
++++.|....+...++... .. ......+..+.+.++++.+++. .++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 2333332111111111000 00 0001111234566777777662 222
Q ss_pred -CCC-cccccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHHHhccccccc
Q psy2924 160 -EPP-NIDNQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 160 -~~~-~lslDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~~~~~~~~~~ 215 (225)
.+. .|.+||||++||..+...+++.++++. .+ |+++|+.. ..+....|..+....
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~-~~~~~~~D~vl~L~~ 978 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS-AILFEEFDRLLLLQK 978 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC-HHHHHhcCEEEEEcC
Confidence 232 455999999999999999999888763 33 44445442 223344454444443
No 364
>KOG0927|consensus
Probab=99.62 E-value=4.6e-16 Score=138.76 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=98.2
Q ss_pred CCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHH
Q psy2924 40 EGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQ 119 (225)
Q Consensus 40 is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 119 (225)
++|-+.. +.++++|||||||||||||.++|...| +.|.+.-...... | +-.|
T Consensus 409 l~fgid~--~srvAlVGPNG~GKsTLlKl~~gdl~p-----------~~G~vs~~~H~~~----~-----------~y~Q 460 (614)
T KOG0927|consen 409 LNFGIDL--DSRVALVGPNGAGKSTLLKLITGDLQP-----------TIGMVSRHSHNKL----P-----------RYNQ 460 (614)
T ss_pred hhcccCc--ccceeEecCCCCchhhhHHHHhhcccc-----------ccccccccccccc----h-----------hhhh
Confidence 3455666 889999999999999999999999999 8888854432211 0 0111
Q ss_pred HHHHHhCCCe--EEEEeeCCCccccHHHHHHHHHhccccc---C---------------------CCCCcccccCCCCCC
Q psy2924 120 VIAVARTCSL--IFIVLDVLKPLGHKKLIEHELEGFGLRL---N---------------------KEPPNIDNQVPQSEL 173 (225)
Q Consensus 120 ~~~~~~~~~~--~l~~~d~~~~~~~~~~~~~~l~~~~l~~---~---------------------~~~~~lslDEp~~~L 173 (225)
........+. +.+++.........+.+..++.++|+.. . +.|..|.|||||++|
T Consensus 461 h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 1111111110 1111122111233456777788888742 1 222334499999999
Q ss_pred CHHHHHHHHHHhhhcCCe-EEEeec-----CChHHHHHHHhccccccceEE
Q psy2924 174 DLDTVKTILSEYRIHNAD-ITLRYD-----ATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 174 D~~~~~~i~~~l~~~~~~-vi~~~~-----~~~~~~~~~~~~~~~~~~~~~ 218 (225)
|...+..+-++|.++... |.++|+ +-++++|.-.++.+...|+.|
T Consensus 541 Di~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 541 DIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999998665 666776 467888888888777766655
No 365
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.62 E-value=4.5e-16 Score=157.77 Aligned_cols=162 Identities=18% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+||+|++ |+++||||++|||||||+++|.|++.| ++|.|.++|.++..++...+ +..+
T Consensus 1300 ~vL~~is~~I~~--GekiaIVGrTGsGKSTL~~lL~rl~~~-----------~~G~I~IdG~dI~~i~~~~L----R~~i 1362 (1522)
T TIGR00957 1300 LVLRHINVTIHG--GEKVGIVGRTGAGKSSLTLGLFRINES-----------AEGEIIIDGLNIAKIGLHDL----RFKI 1362 (1522)
T ss_pred ccccceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCccC-----------CCCeEEECCEEccccCHHHH----HhcC
Confidence 368899999999 999999999999999999999999998 99999999999876653322 2334
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---------cC-------------------------CC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---------LN-------------------------KE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---------~~-------------------------~~ 160 (225)
++++|...+|.. ++-.++ +... ....+.+.++++..++. ++ ++
T Consensus 1363 ~iVpQdp~LF~g-TIr~NL-dp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1363 TIIPQDPVLFSG-SLRMNL-DPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred eEECCCCcccCc-cHHHHc-Cccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 555555444432 111111 1000 11233455555555441 01 12
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.|.+||||++||.++.+.+.+.+++.. .+ ++++|.. +- +...|..+++..+.++
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl--~t-i~~~DrIlVld~G~Iv 1498 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL--NT-IMDYTRVIVLDKGEVA 1498 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH--HH-HHhCCEEEEEECCEEE
Confidence 23333999999999999888988887753 34 4555543 22 2234555555555543
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.62 E-value=4.3e-16 Score=157.69 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=102.2
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+||+|++ |+++||||++|||||||+++|.|++.| ++|.|.++|.++..++... .+..+
T Consensus 1250 ~vL~~isl~I~~--GekvaIVG~SGSGKSTL~~lL~rl~~p-----------~~G~I~IdG~di~~i~~~~----lR~~i 1312 (1495)
T PLN03232 1250 PVLHGLSFFVSP--SEKVGVVGRTGAGKSSMLNALFRIVEL-----------EKGRIMIDDCDVAKFGLTD----LRRVL 1312 (1495)
T ss_pred cccccceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCceEEECCEEhhhCCHHH----HHhhc
Confidence 468899999999 999999999999999999999999998 9999999999886554322 22234
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCc--cccHHHHHHHHHhcccc---------cC-------------------------
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKP--LGHKKLIEHELEGFGLR---------LN------------------------- 158 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~l~~~~l~---------~~------------------------- 158 (225)
++++|...++.. + +.++..+ ....+.+.++++..++. ++
T Consensus 1313 ~iVpQdp~LF~g-T----Ir~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1313 SIIPQSPVLFSG-T----VRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred EEECCCCeeeCc-c----HHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 444444333321 1 1111111 11233455555555441 01
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 159 KEPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 159 ~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+.++.|.+||||++||+++.+.+.+.+++.. .+ |+++|.. +- ....|..+++..+.++
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl--~t-i~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL--NT-IIDCDKILVLSSGQVL 1448 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH--HH-HHhCCEEEEEECCEEE
Confidence 1233344999999999999999998888753 34 4555543 22 2235555555555443
No 367
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.62 E-value=1.9e-14 Score=121.80 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=103.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~ 128 (225)
+++|+|+||||||||+|+|+|... .++++|+||++...|....++.++.++||||+...... ...+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 799999999999999999999875 58999999999988887777778999999998754221 1123334456678899
Q ss_pred eEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc-C-CeEE---EeecCChHHH
Q psy2924 129 LIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH-N-ADIT---LRYDATSDDL 203 (225)
Q Consensus 129 ~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~-~-~~vi---~~~~~~~~~~ 203 (225)
++++++|........+.+.+.++.. ..+.+.+-+..+..++.......+.+... . ..++ ..++.+++++
T Consensus 82 vvl~VvD~~~~~~~~~~i~~~l~~~------~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLTKLQNL------KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred EEEEEEECCCCCchHHHHHHHHHhc------CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 9999999876433223344444432 34555555555555544333333333222 1 1333 3345788888
Q ss_pred HHHHhccccc
Q psy2924 204 IDVVEGNRIY 213 (225)
Q Consensus 204 ~~~~~~~~~~ 213 (225)
.+.+...+..
T Consensus 156 ~~~l~~~l~~ 165 (270)
T TIGR00436 156 AAFIEVHLPE 165 (270)
T ss_pred HHHHHHhCCC
Confidence 8777654443
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.61 E-value=6e-16 Score=157.18 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=102.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+||+|++ |+++||||++|||||||+++|.|++.| .+|.|.++|.++..++...+ +..+
T Consensus 1253 ~VL~~is~~I~~--GekVaIVGrSGSGKSTLl~lL~rl~~p-----------~~G~I~IDG~dI~~i~l~~L----R~~I 1315 (1622)
T PLN03130 1253 PVLHGLSFEISP--SEKVGIVGRTGAGKSSMLNALFRIVEL-----------ERGRILIDGCDISKFGLMDL----RKVL 1315 (1622)
T ss_pred ceecceeEEEcC--CCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCEecccCCHHHH----Hhcc
Confidence 368899999999 999999999999999999999999998 99999999998876553322 2334
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---------cC-------------------------CC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---------LN-------------------------KE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---------~~-------------------------~~ 160 (225)
++++|...+|.. ++-.++ +... ....+.+.++++..++. ++ ++
T Consensus 1316 siVpQdp~LF~G-TIreNL-d~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1316 GIIPQAPVLFSG-TVRFNL-DPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred EEECCCCccccc-cHHHHh-CcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 555554433321 110000 0000 11234455555555441 00 22
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.|.+||||++||.++.+.+.+.+++.. .+ +++.|.. .-+ ..+|..++...+.++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL--~tI-~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL--NTI-IDCDRILVLDAGRVV 1451 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCCh--HHH-HhCCEEEEEECCEEE
Confidence 33444999999999999999999888753 33 4555543 222 224555555544443
No 369
>PTZ00243 ABC transporter; Provisional
Probab=99.61 E-value=5.4e-16 Score=157.15 Aligned_cols=161 Identities=20% Similarity=0.119 Sum_probs=102.7
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+|+||+|++ |+++||||++|||||||+++|+|++.| .+|.|.++|.++..++... .+..++
T Consensus 1325 vL~~vsf~I~~--GekVaIVGrTGSGKSTLl~lLlrl~~p-----------~~G~I~IDG~di~~i~l~~----LR~~I~ 1387 (1560)
T PTZ00243 1325 VLRGVSFRIAP--REKVGIVGRTGSGKSTLLLTFMRMVEV-----------CGGEIRVNGREIGAYGLRE----LRRQFS 1387 (1560)
T ss_pred eeecceEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccCCHHH----HHhcce
Confidence 68899999999 999999999999999999999999998 9999999999987655322 223345
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC-C
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK-E 160 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~-~ 160 (225)
+++|...+|.. ++-.++ +... ....+.+.++++..++. +-+ +
T Consensus 1388 iVpQdp~LF~g-TIreNI-dp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNV-DPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred EECCCCccccc-cHHHHh-Cccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 55554433321 110001 0000 11123344444444331 012 2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++.|.+||||++||+...+.+.+.+.+.. .+ |+++|.. .....+|..+++..+.++
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl---~ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRL---HTVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccH---HHHHhCCEEEEEECCEEE
Confidence 45666999999999999999988887753 34 4555543 223335555555554443
No 370
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=1.2e-15 Score=153.35 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++...+|+|+.+.+ |+.++|+||||||||||||+|+|...+. ...+|.|.++|.++...... .
T Consensus 177 ~~~IL~~vs~~i~~--Ge~~~llGpnGSGKSTLLk~LaG~l~~~--------~~~~G~I~~nG~~~~~~~~~-------~ 239 (1470)
T PLN03140 177 KLTILKDASGIIKP--SRMTLLLGPPSSGKTTLLLALAGKLDPS--------LKVSGEITYNGYRLNEFVPR-------K 239 (1470)
T ss_pred cceeccCCeEEEeC--CeEEEEEcCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEechhhccc-------c
Confidence 45689999999999 9999999999999999999999998760 00389999999876432211 1
Q ss_pred CcchHHH------------HHHHHhCCC---eEEEEe-eCCCcc--------c---------------cHHHHHHHHHhc
Q psy2924 113 GKGRGRQ------------VIAVARTCS---LIFIVL-DVLKPL--------G---------------HKKLIEHELEGF 153 (225)
Q Consensus 113 ~~~~~~~------------~~~~~~~~~---~~l~~~-d~~~~~--------~---------------~~~~~~~~l~~~ 153 (225)
.++++.| .......+. ...... .....+ . ....+..+++.+
T Consensus 240 ~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l 319 (1470)
T PLN03140 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL 319 (1470)
T ss_pred eeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc
Confidence 1222222 111110000 000000 000000 0 011245678888
Q ss_pred ccc--c-----CCCCCccc---------------------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChH
Q psy2924 154 GLR--L-----NKEPPNID---------------------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSD 201 (225)
Q Consensus 154 ~l~--~-----~~~~~~ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~ 201 (225)
|+. . +.....+| +||||++||......+.+.++++. .++++++.+..+
T Consensus 320 GL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~ 399 (1470)
T PLN03140 320 GLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP 399 (1470)
T ss_pred CCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH
Confidence 873 1 22223344 999999999999999999888762 345554433456
Q ss_pred HHHHHHhccccccceEEec
Q psy2924 202 DLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~ 220 (225)
++.++.|..++...+.+++
T Consensus 400 ~i~~lfD~vilL~~G~ivy 418 (1470)
T PLN03140 400 ETFDLFDDIILLSEGQIVY 418 (1470)
T ss_pred HHHHHhheEEEeeCceEEE
Confidence 7777777777665555543
No 371
>KOG0055|consensus
Probab=99.60 E-value=8.5e-16 Score=148.43 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=97.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
..++++||.|++ |+.++|||+|||||||+++.|.+++.| ++|.|.++|.++..++.+-+ +..+
T Consensus 367 ~Il~g~sl~i~~--G~~valVG~SGsGKST~i~LL~RfydP-----------~~G~V~idG~di~~~~~~~l----r~~i 429 (1228)
T KOG0055|consen 367 KILKGVSLKIPS--GQTVALVGPSGSGKSTLIQLLARFYDP-----------TSGEVLIDGEDIRNLNLKWL----RSQI 429 (1228)
T ss_pred hhhCCeEEEeCC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCceEEEcCccchhcchHHH----Hhhc
Confidence 478899999999 999999999999999999999999999 99999999999987775433 2345
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc-------------c---------------------cCCC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL-------------R---------------------LNKE 160 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l-------------~---------------------~~~~ 160 (225)
+.+.|.+.++. .+...++.-+.. ....+.+.++.+..+. . +-+.
T Consensus 430 glV~QePvlF~-~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 430 GLVSQEPVLFA-TTIRENIRYGKP-DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred Ceeeechhhhc-ccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence 66666654432 111111111111 0112222222222211 0 1134
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecC
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDA 198 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~ 198 (225)
|..|.|||||++||+.+...+.+++.... .+|++.|..
T Consensus 508 P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRL 548 (1228)
T KOG0055|consen 508 PKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRL 548 (1228)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeeh
Confidence 55666999999999998888888876653 237888864
No 372
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=2.7e-14 Score=127.40 Aligned_cols=156 Identities=29% Similarity=0.462 Sum_probs=106.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc-CceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
-|+|||.||||||||||+|++..+.+++|||||+.|..|.+.++ +..+.++|+||+...+....++..++...++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 79999999999999999999998889999999999999999988 78899999999987666666777888888888999
Q ss_pred EEEEeeCCCc-----cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCH-HHHHHHHHHhhhcCCeEEEee---cCCh
Q psy2924 130 IFIVLDVLKP-----LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDL-DTVKTILSEYRIHNADITLRY---DATS 200 (225)
Q Consensus 130 ~l~~~d~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~-~~~~~i~~~l~~~~~~vi~~~---~~~~ 200 (225)
+++++|.... .++.+.+.+.|+...-.+. ..+.+.+-++++-.+. ...+.+.+.+ ...++.+| ..++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~-~kP~IVV~NK~DL~~~~e~l~~l~~~l---~~~i~~iSA~tgeGI 315 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLL-ERPQIVVANKMDLPEAEENLEEFKEKL---GPKVFPISALTGQGL 315 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhcc-CCcEEEEEeCCCCcCCHHHHHHHHHHh---CCcEEEEeCCCCCCH
Confidence 9999998542 1222233344444321111 2344554555542222 2223333333 23444444 4578
Q ss_pred HHHHHHHhcc
Q psy2924 201 DDLIDVVEGN 210 (225)
Q Consensus 201 ~~~~~~~~~~ 210 (225)
++++..+...
T Consensus 316 ~eL~~~L~~~ 325 (424)
T PRK12297 316 DELLYAVAEL 325 (424)
T ss_pred HHHHHHHHHH
Confidence 8887665543
No 373
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.60 E-value=1e-15 Score=153.89 Aligned_cols=173 Identities=13% Similarity=0.035 Sum_probs=103.2
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
.+...+|+|+.+.+ |+.++|+||||||||||||+|+|....- ..+.+|.|.++|.++.... ...+.
T Consensus 73 ~~~iL~~vs~~i~~--Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-------~~~~~G~I~~~G~~~~~~~-----~~~r~ 138 (1394)
T TIGR00956 73 TFDILKPMDGLIKP--GELTVVLGRPGSGCSTLLKTIASNTDGF-------HIGVEGVITYDGITPEEIK-----KHYRG 138 (1394)
T ss_pred cceeeeCCEEEEEC--CEEEEEECCCCCCHHHHHHHHhCCCCCC-------CCCceeEEEECCEehHHHH-----hhcCc
Confidence 35588999999999 9999999999999999999999986310 0027899999997653211 01111
Q ss_pred CcchHHHHHHHHhCCCeEEEE---ee---------CCCccccHHH-HHHHHHhcccc--cCC-----CCCccc-------
Q psy2924 113 GKGRGRQVIAVARTCSLIFIV---LD---------VLKPLGHKKL-IEHELEGFGLR--LNK-----EPPNID------- 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~---~d---------~~~~~~~~~~-~~~~l~~~~l~--~~~-----~~~~ls------- 165 (225)
.++++.|....+...++...+ .. .....+..+. ...+++.+|+. .+. .+..||
T Consensus 139 ~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRv 218 (1394)
T TIGR00956 139 DVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRV 218 (1394)
T ss_pred eeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHH
Confidence 233333322122111110000 00 0111111122 34578888873 222 123345
Q ss_pred --------------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --------------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --------------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+.+...+.+.++++. .+++++..+..+++..+.|..+....+.++
T Consensus 219 sIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 219 SIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 999999999999999999988763 234443333346667777766666554443
No 374
>KOG1491|consensus
Probab=99.60 E-value=7.1e-15 Score=124.72 Aligned_cols=176 Identities=23% Similarity=0.386 Sum_probs=117.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-----------------ceEEEEeCCCCCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-----------------AKIQLLDLPGIIEGAK 111 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 111 (225)
.-.+||||-||+|||||||+|+....+.++|||+|.+|..+.+.+.. ..++++|.+|+.+.+.
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 45799999999999999999999988899999999999999887532 3578899999999999
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeCCC------------ccccHHHHHHHHHhccc-ccCCCCCccc--ccCCCCCCCHH
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDVLK------------PLGHKKLIEHELEGFGL-RLNKEPPNID--NQVPQSELDLD 176 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~~~------------~~~~~~~~~~~l~~~~l-~~~~~~~~ls--lDEp~~~LD~~ 176 (225)
.+.++...++..++++|.+.++++... |..+.+.+.+.|....+ .+.+..+.++ .----+++|..
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~~~~~~ 179 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKSNLETK 179 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCcHHHH
Confidence 999999999999999999988876542 33344555555544433 1222222222 00111222221
Q ss_pred -------HHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccc-cccceEEeccCCC
Q psy2924 177 -------TVKTILSEYRIHNADITLRYDATSDDLIDVVEGNR-IYVPCIYLLNKIG 224 (225)
Q Consensus 177 -------~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 224 (225)
....+.+.+.+-...+...+.++-+++.-+..--+ ..+|++|+.|.++
T Consensus 180 q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se 235 (391)
T KOG1491|consen 180 QLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSE 235 (391)
T ss_pred HHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCc
Confidence 22233333322223345567777666554433222 2399999999865
No 375
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.59 E-value=5.4e-16 Score=156.20 Aligned_cols=170 Identities=18% Similarity=0.073 Sum_probs=106.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccc--------------------------------------
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEV-------------------------------------- 76 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v-------------------------------------- 76 (225)
...+++||++++ |+.+||||++|||||||++.|+|++.|.
T Consensus 1182 ~vL~~lsl~i~~--G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1182 PIYKDLTFSCDS--KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred ccccCeeEEEcC--CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 468899999999 9999999999999999999999999872
Q ss_pred -----cccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHH
Q psy2924 77 -----AAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELE 151 (225)
Q Consensus 77 -----~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~ 151 (225)
...+.+|+.+.+|.|.++|.++..++...+ +..++++.|...+|.. ++..++.-+. +....+.+.++++
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~l----R~~i~~V~Qep~LF~g-TIreNI~~g~-~~at~eeI~~A~k 1333 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDL----RNLFSIVSQEPMLFNM-SIYENIKFGK-EDATREDVKRACK 1333 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHH----HhhccEeCCCCccccc-cHHHHHhcCC-CCCCHHHHHHHHH
Confidence 112334566789999999998876654322 3345555554444321 1111111111 1112233444444
Q ss_pred hcccc----------------------------------cCCCCCcccccCCCCCCCHHHHHHHHHHhhhc----CCe-E
Q psy2924 152 GFGLR----------------------------------LNKEPPNIDNQVPQSELDLDTVKTILSEYRIH----NAD-I 192 (225)
Q Consensus 152 ~~~l~----------------------------------~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~----~~~-v 192 (225)
..++. +-+.|+.|.+||||++||..+.+.+.+.+... ..+ |
T Consensus 1334 ~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvI 1413 (1466)
T PTZ00265 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413 (1466)
T ss_pred HcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEE
Confidence 43330 11244555599999999999999999988876 234 5
Q ss_pred EEeecCChHHHHHHHhccccccc
Q psy2924 193 TLRYDATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~ 215 (225)
+++|.. ..+..+|..+++..
T Consensus 1414 iIaHRl---sti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1414 TIAHRI---ASIKRSDKIVVFNN 1433 (1466)
T ss_pred EEechH---HHHHhCCEEEEEeC
Confidence 566654 22334555555443
No 376
>KOG0058|consensus
Probab=99.59 E-value=4.4e-16 Score=143.20 Aligned_cols=134 Identities=19% Similarity=0.111 Sum_probs=87.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
.++|+||+|++ |+.+|+|||||+||||+.+.|.++|.| ++|.|.+||.++..+|.. ..++.++
T Consensus 483 Vlk~lsfti~p--Ge~vALVGPSGsGKSTiasLL~rfY~P-----------tsG~IllDG~~i~~~~~~----~lr~~Ig 545 (716)
T KOG0058|consen 483 VLKNLSFTIRP--GEVVALVGPSGSGKSTIASLLLRFYDP-----------TSGRILLDGVPISDINHK----YLRRKIG 545 (716)
T ss_pred hhcCceeeeCC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCeehhhcCHH----HHHHHee
Confidence 78899999999 999999999999999999999999999 999999999999877632 2334455
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhccc----------------------------------ccCCCC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGL----------------------------------RLNKEP 161 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l----------------------------------~~~~~~ 161 (225)
.+.|.+.+|.. ++..++.-+.. ....+.+....+..+- .+-+.|
T Consensus 546 ~V~QEPvLFs~-sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 546 LVGQEPVLFSG-SIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred eeeccceeecc-cHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 55554333211 11111111111 0111111111111100 012356
Q ss_pred CcccccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 162 PNIDNQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 162 ~~lslDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
..|.|||.|++||.++...+.+.+.+.
T Consensus 624 ~VLILDEATSALDaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 624 RVLILDEATSALDAESEYLVQEALDRL 650 (716)
T ss_pred CEEEEechhhhcchhhHHHHHHHHHHh
Confidence 677799999999998887777777554
No 377
>KOG0059|consensus
Probab=99.59 E-value=1.8e-15 Score=146.36 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=114.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
+.+++++.|++ |++.|+.|+|||||||++|+++|...| ++|.+.+.|.++..- +. ....+..++
T Consensus 580 Av~~ls~~V~~--gecfgLLG~NGAGKtT~f~mltG~~~~-----------t~G~a~i~g~~i~~~-~~--~~~~~~~iG 643 (885)
T KOG0059|consen 580 AVRGLSFAVPP--GECFGLLGVNGAGKTTTFKMLTGETKP-----------TSGEALIKGHDITVS-TD--FQQVRKQLG 643 (885)
T ss_pred hhcceEEEecC--CceEEEecCCCCCchhhHHHHhCCccC-----------CcceEEEecCccccc-cc--hhhhhhhcc
Confidence 67899999999 999999999999999999999999999 999999998877531 10 011233455
Q ss_pred hHHHHHHHHhCCCeEEE-----EeeCCCccccHHHHHHHHHhccc--ccCCCCCccc---------------------cc
Q psy2924 116 RGRQVIAVARTCSLIFI-----VLDVLKPLGHKKLIEHELEGFGL--RLNKEPPNID---------------------NQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~-----~~d~~~~~~~~~~~~~~l~~~~l--~~~~~~~~ls---------------------lD 167 (225)
+-+|.-.+.+..+.-.+ .+.+....+..+.+...++.+++ .++++...+| +|
T Consensus 644 yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD 723 (885)
T KOG0059|consen 644 YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD 723 (885)
T ss_pred cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec
Confidence 55555444433322100 11222223344567888888888 3555555555 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccccce
Q psy2924 168 VPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
||++|+||..++.+.+.+.+..+ .-++..+|.+++...+++....+..+
T Consensus 724 EPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G 774 (885)
T KOG0059|consen 724 EPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIG 774 (885)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecC
Confidence 99999999999999999877643 14444667788887777765555443
No 378
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=127.03 Aligned_cols=90 Identities=29% Similarity=0.387 Sum_probs=78.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch--HHHHHHHHh
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR--GRQVIAVAR 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~~ 125 (225)
|-.++|+|+||+|||||||+|++... .|++.||||||..+..+.++|.++.++||+|++.... .+.. +.+....++
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d-~VE~iGIeRs~~~i~ 295 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD-VVERIGIERAKKAIE 295 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc-HHHHHHHHHHHHHHH
Confidence 88999999999999999999999998 7999999999999999999999999999999985332 1111 344567788
Q ss_pred CCCeEEEEeeCCCc
Q psy2924 126 TCSLIFIVLDVLKP 139 (225)
Q Consensus 126 ~~~~~l~~~d~~~~ 139 (225)
.+|++++++|+..+
T Consensus 296 ~ADlvL~v~D~~~~ 309 (454)
T COG0486 296 EADLVLFVLDASQP 309 (454)
T ss_pred hCCEEEEEEeCCCC
Confidence 99999999999875
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.58 E-value=6.5e-16 Score=133.97 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=116.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
..+.+++||++.+ ||.++|||.+|||||-..+.++++++ +.+.+ -+|.|.|+|.++...+...++.-.-.
T Consensus 23 ~~aVk~isf~i~~--GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~-------~sg~i~f~G~dll~~se~~lr~iRG~ 93 (534)
T COG4172 23 VEAVKGISFDIEA--GETLALVGESGSGKSVTALSILGLLPSPAAAH-------PSGSILFDGEDLLAASERQLRGVRGN 93 (534)
T ss_pred eEeeccceeeecC--CCEEEEEecCCCCccHHHHHHHHhcCCCcccC-------ccceeEEcChhhhcCCHHHHhhhccc
Confidence 4477899999999 99999999999999999999999987 32222 46899999998765443222221112
Q ss_pred CcchHHHHHHHHhCCCe--------EEEEeeCCCccccHHHHHHHHHhcccc-----cCCCCCccc--------------
Q psy2924 113 GKGRGRQVIAVARTCSL--------IFIVLDVLKPLGHKKLIEHELEGFGLR-----LNKEPPNID-------------- 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~--------~l~~~d~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~ls-------------- 165 (225)
.++|++|.+...-|.-. .+.+..+......+.++.++|+.+|+. ++..|+.||
T Consensus 94 ~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa 173 (534)
T COG4172 94 KIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA 173 (534)
T ss_pred ceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence 33444442211100000 000111222344567788999999993 677788888
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCCe-----EEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNAD-----ITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~~-----vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
.||||.+||...+..|+++++++..+ +.|+|+.++ +..+.|.++++..+.++.
T Consensus 174 n~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i--Vr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 174 NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI--VRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH--HHHhhhhEEEEeccEEee
Confidence 89999999999999999999887432 667777544 334556666665555543
No 380
>PLN03140 ABC transporter G family member; Provisional
Probab=99.58 E-value=3.9e-15 Score=149.79 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=97.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+|+|+.+.+ |+.++|+||||||||||||+|+|...+ + +.+|.|.++|.+.... ..+...
T Consensus 894 ~iL~~vs~~i~~--Gel~aL~G~sGaGKTTLL~~LaG~~~~-----g----~~~G~I~inG~~~~~~-------~~~~~i 955 (1470)
T PLN03140 894 QLLREVTGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTG-----G----YIEGDIRISGFPKKQE-------TFARIS 955 (1470)
T ss_pred eEeeCcEEEEEC--CeEEEEECCCCCCHHHHHHHHcCCCCC-----C----cccceEEECCccCChH-------Hhhhhe
Confidence 467899999999 999999999999999999999998642 0 1679999998654210 011122
Q ss_pred chHHHHHHHHhCCCeEEEE-----ee---CCCccccHHHHHHHHHhcccc--cCCCC-----Cccc--------------
Q psy2924 115 GRGRQVIAVARTCSLIFIV-----LD---VLKPLGHKKLIEHELEGFGLR--LNKEP-----PNID-------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~-----~d---~~~~~~~~~~~~~~l~~~~l~--~~~~~-----~~ls-------------- 165 (225)
+++.|....+...++...+ .. .....+..+.+.++++.+++. .+..+ ..||
T Consensus 956 gyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~ 1035 (1470)
T PLN03140 956 GYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELV 1035 (1470)
T ss_pred EEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHh
Confidence 3333322122111110000 00 001112234577788888873 23332 2355
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHHHhcccccc
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDVVEGNRIYV 214 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~~~~~~~~~ 214 (225)
+||||++||+.....+++.++++. .+ |+++|+.. .++.+..|..+...
T Consensus 1036 ~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~-~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1036 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-IDIFEAFDELLLMK 1094 (1470)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHhCCEEEEEc
Confidence 999999999999999999888763 34 33444442 13444555544443
No 381
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.57 E-value=1.4e-13 Score=121.32 Aligned_cols=155 Identities=18% Similarity=0.205 Sum_probs=107.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc----chHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK----GRGRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~----~~~~~~~~~ 123 (225)
+..+||||+||+|||||+|+|+|..+ .+++.||||||+..-.+.++|+.+.++||+|+++..+... .-+......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 57899999999999999999999998 6899999999999999999999999999999997665321 124455677
Q ss_pred HhCCCeEEEEeeCCCcc-ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCH--HHHHHHHHHh----hhcC-CeEEE-
Q psy2924 124 ARTCSLIFIVLDVLKPL-GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDL--DTVKTILSEY----RIHN-ADITL- 194 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~--~~~~~i~~~l----~~~~-~~vi~- 194 (225)
+..+++++.++|+..+. ++...+..+.... ..+.+.+-+..+.++. ...+...+.+ ..+. +.+++
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~ia~~i~~~------g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLRIAGLIEEA------GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHHHHHHHHHc------CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 78899999999998763 3334444444443 3344445555555553 3333333333 2222 23333
Q ss_pred --eecCChHHHHHHHhc
Q psy2924 195 --RYDATSDDLIDVVEG 209 (225)
Q Consensus 195 --~~~~~~~~~~~~~~~ 209 (225)
.++.+++.+++.+..
T Consensus 332 SA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 332 SALTGQGLDKLFEAIKE 348 (444)
T ss_pred EecCCCChHHHHHHHHH
Confidence 345667777665543
No 382
>KOG0061|consensus
Probab=99.57 E-value=6.1e-15 Score=137.53 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=91.6
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
.+...+++|..+.+ |+..||+||+|||||||+|+|+|....- ...+|.|.++|++... +..+.
T Consensus 42 ~k~iL~~vsg~~~~--Gel~AimG~SGsGKtTLL~~Lagr~~~~--------~~~~G~ilvNG~~~~~-------~~~~~ 104 (613)
T KOG0061|consen 42 TKTILKGVSGTAKP--GELLAIMGPSGSGKTTLLNALAGRLNGG--------LKLSGEILLNGRPRDS-------RSFRK 104 (613)
T ss_pred cceeeeCcEEEEec--CeEEEEECCCCCCHHHHHHHHhccccCC--------CcceEEEEECCccCch-------hhhhh
Confidence 36678899999999 9999999999999999999999988630 1278999999954321 11112
Q ss_pred CcchHHHHHHHHhCCCeE--------EEEeeCCCccccHHHHHHHHHhcccc--cCCCC---------------------
Q psy2924 113 GKGRGRQVIAVARTCSLI--------FIVLDVLKPLGHKKLIEHELEGFGLR--LNKEP--------------------- 161 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~--------l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~--------------------- 161 (225)
..+++.|.-..+...++- +..-......+..++++++++.+|+. .+...
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 223333432222222211 00101112234456788888888883 22222
Q ss_pred -----CcccccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 162 -----PNIDNQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 162 -----~~lslDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
+.|.+||||+|||..+...+++.+++++
T Consensus 185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred HHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 2333999999999999988888888764
No 383
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.56 E-value=6.7e-16 Score=137.00 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=100.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||.+.+ |+.++||||+|+|||||.+.|.|..+| .+|.|++||.++...|...+- ..
T Consensus 349 ~pil~~isF~l~~--G~~lgIIGPSgSGKSTLaR~lvG~w~p-----------~~G~VRLDga~l~qWd~e~lG----~h 411 (580)
T COG4618 349 KPILKGISFALQA--GEALGIIGPSGSGKSTLARLLVGIWPP-----------TSGSVRLDGADLRQWDREQLG----RH 411 (580)
T ss_pred CcceecceeEecC--CceEEEECCCCccHHHHHHHHHccccc-----------CCCcEEecchhhhcCCHHHhc----cc
Confidence 3567899999999 999999999999999999999999999 999999999998887743222 23
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
++|.+|...+|... +..++... .++.+.+.+.+..+..+.. +--
T Consensus 412 iGYLPQdVeLF~GT-IaeNIaRf-~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 412 IGYLPQDVELFDGT-IAENIARF-GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred cCcCcccceecCCc-HHHHHHhc-cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 45544443333210 00000000 0011111122222211110 001
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecC----ChHHHHHHHhccccc
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDA----TSDDLIDVVEGNRIY 213 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~----~~~~~~~~~~~~~~~ 213 (225)
.|..+.+|||-++||.+..+.+.+.+.... .. |+++|.. .+|.++.+.+|.+..
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHh
Confidence 223344999999999988888888876653 23 6777764 456666666665544
No 384
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.56 E-value=2.8e-15 Score=151.75 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=102.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+|+||+|++ |+++||+|++|||||||+++|+|++. .+|.|.++|.++..++... .+..
T Consensus 1232 ~~vL~~is~~I~~--GekvaIvGrSGsGKSTLl~lL~rl~~------------~~G~I~IdG~di~~i~~~~----lR~~ 1293 (1490)
T TIGR01271 1232 RAVLQDLSFSVEG--GQRVGLLGRTGSGKSTLLSALLRLLS------------TEGEIQIDGVSWNSVTLQT----WRKA 1293 (1490)
T ss_pred cceeeccEEEEcC--CCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEcccCCHHH----HHhc
Confidence 3478899999999 99999999999999999999999974 5799999999886544321 2334
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCc--cccHHHHHHHHHhcccc----------------------------------c
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKP--LGHKKLIEHELEGFGLR----------------------------------L 157 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~l~~~~l~----------------------------------~ 157 (225)
+++++|...+|.. ++ .++..+ ....+.+.++++.+++. +
T Consensus 1294 is~IpQdp~LF~G-TI----R~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TF----RKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred eEEEeCCCccCcc-CH----HHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 4555555444432 11 111111 11234555666655541 0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 158 NKEPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 158 ~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
-++++.|.+||||++||+...+.+.+.++... .+ |+++|. ++- ....|..+++..+.++
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHR--l~t-i~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR--VEA-LLECQQFLVIEGSSVK 1430 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC--HHH-HHhCCEEEEEECCEEE
Confidence 12233444999999999999999999988753 33 444554 222 2335665666555543
No 385
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.56 E-value=2e-15 Score=152.17 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=47.5
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc-CceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK-GAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~-g~~i~ 99 (225)
...+++||++++ |++++|+||||||||||+++|+|++.| ++|.|.++ |.++.
T Consensus 399 ~vL~~isl~i~~--Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 399 EIYKDLNFTLTE--GKTYAFVGESGCGKSTILKLIERLYDP-----------TEGDIIINDSHNLK 451 (1466)
T ss_pred ceeccceEEEcC--CCEEEEECCCCCCHHHHHHHHHHhccC-----------CCCeEEEeCCcchh
Confidence 378899999999 999999999999999999999999998 99999994 56654
No 386
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.55 E-value=1.7e-13 Score=110.89 Aligned_cols=191 Identities=23% Similarity=0.268 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccce
Q psy2924 10 TAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG 89 (225)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G 89 (225)
.|-.+.+++.|+++++++++.....+........-+. -..++|+|++|||||||+|.+++....+.+++++|.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~ 81 (204)
T cd01878 4 LETDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSG--IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR 81 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcC--CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE
Confidence 4567789999999999999866554322221111112 35899999999999999999999876677888999999888
Q ss_pred EEEEcCc-eEEEEeCCCCCCCccCCc-chHHHHHHHHhCCCeEEEEeeCCCcccc--HHHHHHHHHhcccccCCCCCccc
Q psy2924 90 CIKYKGA-KIQLLDLPGIIEGAKDGK-GRGRQVIAVARTCSLIFIVLDVLKPLGH--KKLIEHELEGFGLRLNKEPPNID 165 (225)
Q Consensus 90 ~i~~~g~-~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~~~l~~~~~~~~ls 165 (225)
.+.+.+. .+.++|+||+........ .........+.++|++++++|...+... .....++++.++. ...+.+.
T Consensus 82 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~vii 158 (204)
T cd01878 82 RLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMIL 158 (204)
T ss_pred EEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEE
Confidence 8888776 899999999854322111 0011122335678999999998754221 2223345544432 2345555
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---cCChHHHHHHHh
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNADITLRY---DATSDDLIDVVE 208 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~~~~~~~~~~~~ 208 (225)
+-+.++-....... +.+......++.+| ..+++++++.+.
T Consensus 159 V~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~ 201 (204)
T cd01878 159 VLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLDELLEAIE 201 (204)
T ss_pred EEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHH
Confidence 55555544433322 22323233333333 467887776553
No 387
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1e-13 Score=127.21 Aligned_cols=93 Identities=28% Similarity=0.424 Sum_probs=75.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC-cchHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG-KGRGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~~ 128 (225)
..+|++|.||+|||||+|+|+|..+.|+||||+|.+..+|...+.|.++..+|+||.+.....+ .+.+.+..-.-.++|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D 83 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPD 83 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCC
Confidence 3599999999999999999999999999999999999999999999999999999998644332 222333222335689
Q ss_pred eEEEEeeCCCcccc
Q psy2924 129 LIFIVLDVLKPLGH 142 (225)
Q Consensus 129 ~~l~~~d~~~~~~~ 142 (225)
++++++|+.+-++.
T Consensus 84 ~ivnVvDAtnLeRn 97 (653)
T COG0370 84 LIVNVVDATNLERN 97 (653)
T ss_pred EEEEEcccchHHHH
Confidence 99999999765443
No 388
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.54 E-value=3.6e-13 Score=105.16 Aligned_cols=89 Identities=36% Similarity=0.671 Sum_probs=71.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.|+|+|++|||||||+|+|++....++.+|++|+++..|.+.+++. .+.++|+||+.........+.......+..+++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 4899999999999999999997777889999999999999988887 899999999754332222233444445567899
Q ss_pred EEEEeeCCCc
Q psy2924 130 IFIVLDVLKP 139 (225)
Q Consensus 130 ~l~~~d~~~~ 139 (225)
+++++|...+
T Consensus 82 vi~v~D~~~~ 91 (170)
T cd01898 82 LLHVIDLSGD 91 (170)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 389
>KOG0056|consensus
Probab=99.52 E-value=1.1e-15 Score=135.14 Aligned_cols=145 Identities=20% Similarity=0.224 Sum_probs=91.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+-..+|+||.+++ |+.+++|||+|+||||+++.|.++... .+|.|.+||+++..+.... .+..
T Consensus 551 k~vl~disF~v~p--GktvAlVG~SGaGKSTimRlLfRffdv-----------~sGsI~iDgqdIrnvt~~S----LRs~ 613 (790)
T KOG0056|consen 551 KPVLSDISFTVQP--GKTVALVGPSGAGKSTIMRLLFRFFDV-----------NSGSITIDGQDIRNVTQSS----LRSS 613 (790)
T ss_pred CceeecceEEecC--CcEEEEECCCCCchhHHHHHHHHHhhc-----------cCceEEEcCchHHHHHHHH----HHHh
Confidence 3466789999999 999999999999999999999999987 8999999999987654322 2334
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhc--------------------cccc--------------CC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGF--------------------GLRL--------------NK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~--------------------~l~~--------------~~ 159 (225)
++.++|...++.+ +..-++.-+. +....+.+.++.+.. |+.+ -+
T Consensus 614 IGVVPQDtvLFNd-TI~yNIryak-~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 614 IGVVPQDTVLFND-TILYNIRYAK-PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred cCcccCcceeecc-eeeeheeecC-CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 5555554433322 1111121111 111112222222222 1111 12
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeec
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHNA---DITLRYD 197 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~ 197 (225)
.|..+.+||.|++||....+.|...+.+..+ .|++.|.
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHR 732 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHR 732 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeee
Confidence 3344559999999998887778877777643 3666664
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=5.1e-16 Score=117.88 Aligned_cols=49 Identities=31% Similarity=0.457 Sum_probs=45.2
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
++++|++.+ |++++|+|+||||||||+++|+|...+ .+|.|.+++.++.
T Consensus 2 ~~v~~~i~~--g~~~~i~G~nGsGKStLl~~l~g~~~~-----------~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 2 KNVSLEIKP--GEIVAIVGPNGSGKSTLLKALAGLLPP-----------DSGSILINGKDIS 50 (137)
T ss_dssp EEEEEEEET--TSEEEEEESTTSSHHHHHHHHTTSSHE-----------SEEEEEETTEEGT
T ss_pred CceEEEEcC--CCEEEEEccCCCccccceeeecccccc-----------ccccccccccccc
Confidence 478999999 999999999999999999999999998 8999999987653
No 391
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=4.6e-13 Score=104.95 Aligned_cols=86 Identities=45% Similarity=0.749 Sum_probs=70.0
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc-CceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEE
Q psy2924 54 FVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFI 132 (225)
Q Consensus 54 IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 132 (225)
|+|++|||||||+|+|++....++++++||+++..|.+.+. +..+.++|+||+.........+..+....++.++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987678899999999999999898 99999999999854333222333455556778999999
Q ss_pred EeeCCCc
Q psy2924 133 VLDVLKP 139 (225)
Q Consensus 133 ~~d~~~~ 139 (225)
++|....
T Consensus 81 v~d~~~~ 87 (176)
T cd01881 81 VVDASED 87 (176)
T ss_pred EEeccCC
Confidence 9998754
No 392
>KOG0054|consensus
Probab=99.50 E-value=2.8e-14 Score=140.53 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=104.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.+.+++||+|++ |++|||||+.|||||||+++|.++..| .+|.|.+||.++..+....+ +..+
T Consensus 1154 ~VLk~is~~I~p--~eKVGIVGRTGaGKSSL~~aLFRl~e~-----------~~G~I~IDgvdI~~igL~dL----Rsrl 1216 (1381)
T KOG0054|consen 1154 LVLKGISFTIKP--GEKVGIVGRTGAGKSSLILALFRLVEP-----------AEGEILIDGVDISKIGLHDL----RSRL 1216 (1381)
T ss_pred chhcCceEEEcC--CceEEEeCCCCCCHHHHHHHHHHhcCc-----------cCCeEEEcCeecccccHHHH----HhcC
Confidence 578899999999 999999999999999999999999998 89999999999876553222 2233
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCcc--ccHHHHHHHHHhcccc--cCCCC-----------Cccc--------------
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPL--GHKKLIEHELEGFGLR--LNKEP-----------PNID-------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~l~--~~~~~-----------~~ls-------------- 165 (225)
...+|.+.+|... +..+.+|. -.++.+.++|+..++. ..+.+ .++|
T Consensus 1217 sIIPQdPvLFsGT-----vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGT-----VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred eeeCCCCceecCc-----cccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence 4444444443321 33334442 2356688888888772 11111 2233
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcCC--e-EEEeec----CChHHHHHHHhccccc
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHNA--D-ITLRYD----ATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~~--~-vi~~~~----~~~~~~~~~~~~~~~~ 213 (225)
+||.|+++|+..=.-|.+.+++.-+ + +.|-|. .+.|+++.+..|..+.
T Consensus 1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred ccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 9999999999887777777776533 3 445454 2344444444444443
No 393
>PRK15494 era GTPase Era; Provisional
Probab=99.50 E-value=6.9e-13 Score=115.78 Aligned_cols=171 Identities=21% Similarity=0.239 Sum_probs=109.2
Q ss_pred CCCCCCceeeccCCe-------eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 36 GGPGEGFDVAKTGDA-------RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 36 ~~~~is~~i~~~~g~-------~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
....+++++.. |+ .++|+|++|||||||+|.+.|... .+++.++||++...|.+.+++.++.++||||..
T Consensus 34 ~~~~~~~~~~~--g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~ 111 (339)
T PRK15494 34 STSKLPLEVKF--GKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF 111 (339)
T ss_pred cccCCcccccc--ccccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC
Confidence 45667788887 88 999999999999999999999765 567899999999999999999999999999986
Q ss_pred CCccC-CcchHHHHHHHHhCCCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHh
Q psy2924 108 EGAKD-GKGRGRQVIAVARTCSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEY 185 (225)
Q Consensus 108 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l 185 (225)
..... ...+.......+.++|++++++|....... ...+.+.++..+ .+. +.+-++.+..+. ....+.+.+
T Consensus 112 ~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~-----~p~-IlViNKiDl~~~-~~~~~~~~l 184 (339)
T PRK15494 112 EPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLN-----IVP-IFLLNKIDIESK-YLNDIKAFL 184 (339)
T ss_pred CCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcC-----CCE-EEEEEhhcCccc-cHHHHHHHH
Confidence 43221 122333344457789999999987653222 122333333321 222 333344332222 233444444
Q ss_pred hhcC--CeEEEee---cCChHHHHHHHhccccccc
Q psy2924 186 RIHN--ADITLRY---DATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 186 ~~~~--~~vi~~~---~~~~~~~~~~~~~~~~~~~ 215 (225)
.... ..++.+| +.+++++.+.+...+...|
T Consensus 185 ~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 185 TENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred HhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 4332 2333333 5678888777655444433
No 394
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.50 E-value=2e-13 Score=119.24 Aligned_cols=88 Identities=32% Similarity=0.550 Sum_probs=80.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCc-----------------eEEEEeCCCCCCCcc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGA-----------------KIQLLDLPGIIEGAK 111 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~ 111 (225)
-.+||||.||+|||||+|+|++... ++++|||||.+|..|.+.+.+. .+.+.|.||+...+.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 3689999999999999999999999 9999999999999999988662 578899999999888
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeCC
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
.+.++..+++..++++|+++++++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 88889999999999999999998864
No 395
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.50 E-value=3.3e-13 Score=111.42 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHH-HHH
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLL-STL 69 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLl-n~l 69 (225)
...+.+++||++++ |++++|+|+||||||||+ ..+
T Consensus 7 ~~~~l~~vsl~i~~--Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 7 REHNLKNVDVDIPR--NKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred hhhccccceeecCC--CcEEEEEcCCCCCHHHHHHHHH
Confidence 35578899999999 999999999999999995 444
No 396
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=2.4e-13 Score=100.43 Aligned_cols=88 Identities=33% Similarity=0.494 Sum_probs=70.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc--chHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK--GRGRQVIAVARTC 127 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 127 (225)
.|+|+|++|||||||+|+|++... .+++.+++|+.+..+.+.+++..+.++|+||+........ ....+....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 489999999999999999999643 7899999999998888999999999999999876432211 1233455556788
Q ss_pred CeEEEEeeCCC
Q psy2924 128 SLIFIVLDVLK 138 (225)
Q Consensus 128 ~~~l~~~d~~~ 138 (225)
++++++++...
T Consensus 81 d~ii~vv~~~~ 91 (116)
T PF01926_consen 81 DLIIYVVDASN 91 (116)
T ss_dssp SEEEEEEETTS
T ss_pred CEEEEEEECCC
Confidence 99999999655
No 397
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.8e-13 Score=118.57 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=98.3
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchH
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 117 (225)
..+|+++.+ |+.+-|+|.||||||||++.++|+++| ++|.|.++|.++.--.. ..+.
T Consensus 340 gPiNl~ikr--GelvFliG~NGsGKST~~~LLtGL~~P-----------qsG~I~ldg~pV~~e~l----------edYR 396 (546)
T COG4615 340 GPINLTIKR--GELVFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVSAEQL----------EDYR 396 (546)
T ss_pred cceeeEEec--CcEEEEECCCCCcHHHHHHHHhcccCC-----------CCCceeECCccCCCCCH----------HHHH
Confidence 467888899 999999999999999999999999999 99999999987642111 0111
Q ss_pred HHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----cC------------------------CCCCcccccCC
Q psy2924 118 RQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----LN------------------------KEPPNIDNQVP 169 (225)
Q Consensus 118 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----~~------------------------~~~~~lslDEp 169 (225)
.-+..+|.+..+.-..+.... ....+.+...++++.+. ++ ...+.+.+||-
T Consensus 397 ~LfSavFsDyhLF~~ll~~e~-~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 397 KLFSAVFSDYHLFDQLLGPEG-KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHHhhhHhhhHhhhCCcc-CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 223333333221111111111 11233444455554441 00 12234449999
Q ss_pred CCCCCHHHHHHHHH----HhhhcCCeEE-EeecC----ChHHHHHHHhcccccc
Q psy2924 170 QSELDLDTVKTILS----EYRIHNADIT-LRYDA----TSDDLIDVVEGNRIYV 214 (225)
Q Consensus 170 ~~~LD~~~~~~i~~----~l~~~~~~vi-~~~~~----~~~~~~~~~~~~~~~~ 214 (225)
.+.-||..++.+.+ .+++.+++|+ ++||. .+|++..+..|.++..
T Consensus 476 AADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 476 AADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999987766544 4566677744 56663 6899999999988773
No 398
>PRK00089 era GTPase Era; Reviewed
Probab=99.46 E-value=1.8e-12 Score=110.81 Aligned_cols=157 Identities=24% Similarity=0.314 Sum_probs=104.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 127 (225)
.+++|+|++|||||||+|.|+|... .+++.|+||++...|.+..++.++.++||||+...... ...+.......+.++
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 3899999999999999999999875 67899999999888877767778999999998653311 111223344566789
Q ss_pred CeEEEEeeCCCcc-ccHHHHHHHHHhcccccCCCCCcccccCCCCCC-CHHHHHHHHHHhhhcC--CeEEEee---cCCh
Q psy2924 128 SLIFIVLDVLKPL-GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSEL-DLDTVKTILSEYRIHN--ADITLRY---DATS 200 (225)
Q Consensus 128 ~~~l~~~d~~~~~-~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~L-D~~~~~~i~~~l~~~~--~~vi~~~---~~~~ 200 (225)
|++++++|..... .....+.+.+... ..+.+.+-+..+.+ +.......++.+.... ..++..| +.++
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 9999999987632 2222333333321 34555556666666 4455555566655422 2333333 4678
Q ss_pred HHHHHHHhcccc
Q psy2924 201 DDLIDVVEGNRI 212 (225)
Q Consensus 201 ~~~~~~~~~~~~ 212 (225)
+++.+.+...+.
T Consensus 160 ~~L~~~L~~~l~ 171 (292)
T PRK00089 160 DELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHhCC
Confidence 888877765543
No 399
>KOG0055|consensus
Probab=99.46 E-value=3e-14 Score=137.89 Aligned_cols=145 Identities=16% Similarity=0.107 Sum_probs=96.9
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
...++|+|+++++ |+.+|||||+||||||.+..|-++|.| +.|.|.+||+++..+++.. .+..
T Consensus 1003 ~~Il~~l~l~i~~--GqTvALVG~SGsGKSTvI~LLeRfYdp-----------~~G~V~IDg~dik~lnl~~----LR~~ 1065 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRA--GQTVALVGPSGSGKSTVISLLERFYDP-----------DAGKVKIDGVDIKDLNLKW----LRKQ 1065 (1228)
T ss_pred chhhcCCcEEecC--CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCcccccCCHHH----HHHh
Confidence 4478899999999 999999999999999999999999998 9999999999998777543 3344
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc----------------------------------cCC
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR----------------------------------LNK 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~----------------------------------~~~ 159 (225)
++.+.|.+.+|.. +.-.++.-+... -..+.+.++++..++. +-+
T Consensus 1066 i~lVsQEP~LF~~-TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNG-TIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred cceeccCchhhcc-cHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 5666665544421 111111111111 1122333333333220 113
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--C-eEEEeec
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--A-DITLRYD 197 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~-~vi~~~~ 197 (225)
.|..|.|||.|++||.++.+-+.+++.... . .|++.|.
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHR 1184 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecc
Confidence 455666999999999988777777776642 2 3777775
No 400
>KOG1191|consensus
Probab=99.45 E-value=3.8e-13 Score=119.05 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=86.5
Q ss_pred HHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEE
Q psy2924 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
.|++++.+..++.-. .=.++. |..++|+|+||+|||||+|+|+...+ .|++.||||||...-.+.++|.++.+.
T Consensus 247 ~l~d~v~s~l~~~~~---~e~lq~--gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~ 321 (531)
T KOG1191|consen 247 SLLDDVLSHLNKADE---IERLQS--GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLS 321 (531)
T ss_pred HHHHHHHHHHHhhhh---HHHhhc--CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEE
Confidence 355566555553222 223455 88999999999999999999999988 799999999999999999999999999
Q ss_pred eCCCCCCCccCCcch--HHHHHHHHhCCCeEEEEeeCC
Q psy2924 102 DLPGIIEGAKDGKGR--GRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 102 d~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~ 137 (225)
||+|+++..-..+.. +.+....++.+|++++++|+.
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~ 359 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAE 359 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccc
Confidence 999999833332222 455666778899999999983
No 401
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.41 E-value=3.1e-13 Score=105.70 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=91.9
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
....+|.++.. |+++-+|||||||||||+-.++|+.+ -+|.|.++|.++...... .
T Consensus 14 RL~plS~qv~a--Ge~~HliGPNGaGKSTLLA~lAGm~~------------~sGsi~~~G~~l~~~~~~----------e 69 (248)
T COG4138 14 RLGPLSGEVRA--GEILHLVGPNGAGKSTLLARMAGMTS------------GSGSIQFAGQPLEAWSAT----------E 69 (248)
T ss_pred ccccccccccc--ceEEEEECCCCccHHHHHHHHhCCCC------------CCceEEECCcchhHHhHh----------H
Confidence 34467778888 99999999999999999999999985 689999999987654322 1
Q ss_pred hHHHHHHHHhCC--CeEEEEeeC---CCcccc-HHHHHHHHHhccc--ccCCCCCccc----------------------
Q psy2924 116 RGRQVIAVARTC--SLIFIVLDV---LKPLGH-KKLIEHELEGFGL--RLNKEPPNID---------------------- 165 (225)
Q Consensus 116 ~~~~~~~~~~~~--~~~l~~~d~---~~~~~~-~~~~~~~l~~~~l--~~~~~~~~ls---------------------- 165 (225)
..++-.++.++. .+.+.++.. ..+... ...+.++...+++ .+.+....||
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP 149 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANP 149 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCc
Confidence 222223333322 222222221 122111 1234445555554 1222222233
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhc---CCeE-EEeec-----CChHHHHHHHhccccc
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIH---NADI-TLRYD-----ATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~---~~~v-i~~~~-----~~~~~~~~~~~~~~~~ 213 (225)
+|||.++||......+-..+..+ +..| +..|+ ..++++|-+..|.+..
T Consensus 150 ~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 150 AGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred cceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 89999999986655544444444 3343 34444 2477777777765544
No 402
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.40 E-value=2.8e-13 Score=137.38 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=46.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
+...+|+||++++ |+.++|+||||||||||+++|+|...| ..|.|.++|.
T Consensus 439 ~~~l~~i~l~i~~--G~~~~I~G~~GsGKSTLl~~l~G~~~~-----------~~G~i~~~g~ 488 (1490)
T TIGR01271 439 TPVLKNISFKLEK--GQLLAVAGSTGSGKSSLLMMIMGELEP-----------SEGKIKHSGR 488 (1490)
T ss_pred CcceeeeEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCE
Confidence 4578899999999 999999999999999999999999998 8999999883
No 403
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.38 E-value=2.2e-13 Score=110.19 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.++++++.+ | +++|+||||||||||+++|+|+..+
T Consensus 14 ~~~~l~~~~--g-~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 14 DKTTIPFPP--G-LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred CCeeeecCC--C-cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999 8 9999999999999999999998754
No 404
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.37 E-value=1.4e-11 Score=117.49 Aligned_cols=149 Identities=18% Similarity=0.280 Sum_probs=95.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC--cchHHHH---HHHH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG--KGRGRQV---IAVA 124 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~~~~~---~~~~ 124 (225)
..++++|.+|||||||+|.|+|....++++|++|+++..|.+.+++.++.++|+||.+...... .....+. ....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 4799999999999999999999988899999999999999999999999999999987543211 1111111 1223
Q ss_pred hCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCccc----ccCCC-CCCCHHHHHHHHHHhhhcCCe---EEEee
Q psy2924 125 RTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNID----NQVPQ-SELDLDTVKTILSEYRIHNAD---ITLRY 196 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~ls----lDEp~-~~LD~~~~~~i~~~l~~~~~~---vi~~~ 196 (225)
..+|++++++|+...++... +...+.+.+ .|.+. +|.+- .+.+ ...+.+.+.+ +.. +...+
T Consensus 84 ~~aD~vI~VvDat~ler~l~-l~~ql~e~g------iPvIvVlNK~Dl~~~~~i~-id~~~L~~~L---G~pVvpiSA~~ 152 (772)
T PRK09554 84 GDADLLINVVDASNLERNLY-LTLQLLELG------IPCIVALNMLDIAEKQNIR-IDIDALSARL---GCPVIPLVSTR 152 (772)
T ss_pred cCCCEEEEEecCCcchhhHH-HHHHHHHcC------CCEEEEEEchhhhhccCcH-HHHHHHHHHh---CCCEEEEEeec
Confidence 57899999999876433222 222333332 34444 44432 1222 2223333322 333 33344
Q ss_pred cCChHHHHHHHhc
Q psy2924 197 DATSDDLIDVVEG 209 (225)
Q Consensus 197 ~~~~~~~~~~~~~ 209 (225)
..+++++.+.+..
T Consensus 153 g~GIdeL~~~I~~ 165 (772)
T PRK09554 153 GRGIEALKLAIDR 165 (772)
T ss_pred CCCHHHHHHHHHH
Confidence 5677887776654
No 405
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.36 E-value=7.5e-12 Score=113.11 Aligned_cols=122 Identities=24% Similarity=0.276 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceE
Q psy2924 12 GHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGC 90 (225)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~ 90 (225)
.....++.++.+++++++......... -.+.. +-.++|+|++|||||||+|.+++... .++++|+||++.....
T Consensus 183 ~~~~~i~~~i~~l~~~l~~l~~~~~~~---~~~~~--~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~ 257 (449)
T PRK05291 183 LSDEKILEKLEELIAELEALLASARQG---EILRE--GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEH 257 (449)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc--CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEE
Confidence 344566677777777777655433211 12234 67899999999999999999999775 6899999999999999
Q ss_pred EEEcCceEEEEeCCCCCCCccCCcch--HHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 91 IKYKGAKIQLLDLPGIIEGAKDGKGR--GRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 91 i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.++|.++.++||||+... ...+.. .......+.++|++++++|...+
T Consensus 258 i~~~g~~i~l~DT~G~~~~-~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~ 307 (449)
T PRK05291 258 INLDGIPLRLIDTAGIRET-DDEVEKIGIERSREAIEEADLVLLVLDASEP 307 (449)
T ss_pred EEECCeEEEEEeCCCCCCC-ccHHHHHHHHHHHHHHHhCCEEEEEecCCCC
Confidence 9999999999999998642 111110 12234467889999999998754
No 406
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.36 E-value=1.1e-12 Score=133.42 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=45.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
...+++||++++ |+.++|+||||||||||+++|+|.++| .+|.|.++|.
T Consensus 652 ~~l~~isl~i~~--G~~v~IvG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g~ 700 (1522)
T TIGR00957 652 PTLNGITFSIPE--GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVHMKGS 700 (1522)
T ss_pred ceeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcc-----------CCcEEEECCE
Confidence 367899999999 999999999999999999999999998 8999998873
No 407
>KOG0066|consensus
Probab=99.35 E-value=1.8e-12 Score=113.89 Aligned_cols=141 Identities=22% Similarity=0.272 Sum_probs=77.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-eEEEEeCCC-CCCCc-cC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPG-IIEGA-KD 112 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g-~~~~~-~~ 112 (225)
-|..++|-|.- ..+|+||||||+||||||+.|+|.+.| ..|...-+.+ .|..+|... ..-.. ..
T Consensus 602 LFkkldFGiDm--dSRiaIVGPNGVGKSTlLkLL~Gkl~P-----------~~GE~RKnhrL~iG~FdQh~~E~L~~Eet 668 (807)
T KOG0066|consen 602 LFKKLDFGIDM--DSRIAIVGPNGVGKSTLLKLLIGKLDP-----------NDGELRKNHRLRIGWFDQHANEALNGEET 668 (807)
T ss_pred hhhcccccccc--cceeEEECCCCccHHHHHHHHhcCCCC-----------CcchhhccceeeeechhhhhHHhhccccC
Confidence 45556666666 779999999999999999999999988 7776532211 111111100 00000 00
Q ss_pred Ccch-----------HHHHHH---HHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHH
Q psy2924 113 GKGR-----------GRQVIA---VARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTV 178 (225)
Q Consensus 113 ~~~~-----------~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~ 178 (225)
...+ .+..+. +..++.- +-+.+.+.. ++.++ .+..+-+ ..|..|.+||||++||.+++
T Consensus 669 p~EyLqr~FNlpyq~ARK~LG~fGL~sHAHT-ikikdLSGG--QKaRV--alaeLal---~~PDvlILDEPTNNLDIESI 740 (807)
T KOG0066|consen 669 PVEYLQRKFNLPYQEARKQLGTFGLASHAHT-IKIKDLSGG--QKARV--ALAELAL---GGPDVLILDEPTNNLDIESI 740 (807)
T ss_pred HHHHHHHhcCCChHHHHHHhhhhhhhhccce-EeeeecCCc--chHHH--HHHHHhc---CCCCEEEecCCCCCcchhhH
Confidence 0000 000010 0111111 122222221 11111 1111111 24667889999999999999
Q ss_pred HHHHHHhhhcCCe-EEEeec
Q psy2924 179 KTILSEYRIHNAD-ITLRYD 197 (225)
Q Consensus 179 ~~i~~~l~~~~~~-vi~~~~ 197 (225)
..+-+.+.++... |+++|+
T Consensus 741 DALaEAIney~GgVi~VsHD 760 (807)
T KOG0066|consen 741 DALAEAINEYNGGVIMVSHD 760 (807)
T ss_pred HHHHHHHHhccCcEEEEecc
Confidence 9999999998655 667775
No 408
>KOG0065|consensus
Probab=99.33 E-value=2.2e-12 Score=125.39 Aligned_cols=147 Identities=17% Similarity=0.094 Sum_probs=87.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
+-.+|++=-+.+ |...||+|++|||||||||.|+|... . ..++|.|.++|.+.... ..++..
T Consensus 805 qLL~~V~G~~kP--G~LTALMG~SGAGKTTLLdvLA~R~t--~-------G~I~Gdi~i~G~p~~q~-------tF~R~~ 866 (1391)
T KOG0065|consen 805 QLLNNVSGAFKP--GVLTALMGESGAGKTTLLDVLAGRKT--G-------GYIEGDILISGFPKDQE-------TFARVS 866 (1391)
T ss_pred EhhhcCceEecC--CceeehhcCCCCchHHHHHHHhcCcc--c-------ceEEeEEEECCeeCchh-------hhcccc
Confidence 345566666778 89999999999999999999999863 1 12789999999865421 112223
Q ss_pred chHHHHHHHHhCCCeE--------EEEeeCCCccccHHHHHHHHHhcccc---------------------------cCC
Q psy2924 115 GRGRQVIAVARTCSLI--------FIVLDVLKPLGHKKLIEHELEGFGLR---------------------------LNK 159 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~--------l~~~d~~~~~~~~~~~~~~l~~~~l~---------------------------~~~ 159 (225)
+++.|.-......++- +-.-.....++..+.++++++.+++. +..
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec
Confidence 3333321111111110 00000111123335677777776652 112
Q ss_pred CC-CcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEE-eecCC
Q psy2924 160 EP-PNIDNQVPQSELDLDTVKTILSEYRIHN---ADITL-RYDAT 199 (225)
Q Consensus 160 ~~-~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~-~~~~~ 199 (225)
+| ..|-|||||+|||..+...+++.++.+. .+|++ +|...
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 22 2223999999999999888888888763 44554 56553
No 409
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=2.4e-11 Score=109.15 Aligned_cols=151 Identities=24% Similarity=0.215 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~ 128 (225)
+++|+|++|+|||||+|.|++... .++++|++|++...+.+.++|..+.++||||+...... ...+..+....++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999765 57899999999999999999999999999997532111 1123345566778899
Q ss_pred eEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC----eEEEeecCChHHH
Q psy2924 129 LIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA----DITLRYDATSDDL 203 (225)
Q Consensus 129 ~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~----~vi~~~~~~~~~~ 203 (225)
++++++|+..... ....+.+.+++. ..+.+.+-+..+..+.... ..+ +..++. .+...|+.+++++
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~------~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKS------GKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDL 151 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHh------CCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHH
Confidence 9999999876422 223445555553 2344444444443332111 111 222222 2555566778877
Q ss_pred HHHHhcc
Q psy2924 204 IDVVEGN 210 (225)
Q Consensus 204 ~~~~~~~ 210 (225)
.+.+...
T Consensus 152 l~~i~~~ 158 (429)
T TIGR03594 152 LDAILEL 158 (429)
T ss_pred HHHHHHh
Confidence 7665443
No 410
>PLN03130 ABC transporter C family member; Provisional
Probab=99.32 E-value=2.1e-12 Score=131.58 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=43.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccc-eEEEEcC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP-GCIKYKG 95 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~-G~i~~~g 95 (225)
...+|+||++++ |+.++|+||+|||||||+++|+|.+.+ .+ |.|.+.+
T Consensus 631 ~vL~~inl~i~~--Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~GG~I~l~~ 679 (1622)
T PLN03130 631 PTLSNINLDVPV--GSLVAIVGSTGEGKTSLISAMLGELPP-----------RSDASVVIRG 679 (1622)
T ss_pred ceeeceeEEecC--CCEEEEECCCCCCHHHHHHHHHHhhcc-----------CCCceEEEcC
Confidence 357899999999 999999999999999999999999998 78 7887654
No 411
>PTZ00243 ABC transporter; Provisional
Probab=99.31 E-value=1.6e-11 Score=124.95 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=44.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG 95 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g 95 (225)
+...+++||++++ |+.++|+|+||||||||+++|+|...| ++|.|.+.+
T Consensus 673 ~~iL~~isl~i~~--G~~~~IiG~nGsGKSTLL~~i~G~~~~-----------~~G~i~~~~ 721 (1560)
T PTZ00243 673 KVLLRDVSVSVPR--GKLTVVLGATGSGKSTLLQSLLSQFEI-----------SEGRVWAER 721 (1560)
T ss_pred ceeEeeeEEEECC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECC
Confidence 4468899999999 999999999999999999999999988 889987753
No 412
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.31 E-value=1.7e-10 Score=89.84 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=91.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc-chHHHHHHH-HhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK-GRGRQVIAV-ARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~-~~~~~ 128 (225)
.++++|++|||||||+|++++....++++|++|.++..+.+.+.+..+.++|+||......... .+..+.... ....+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 5899999999999999999998777788999999988888888888999999999743211111 111122211 22357
Q ss_pred eEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCCeE---EEeecCChHHHH
Q psy2924 129 LIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADI---TLRYDATSDDLI 204 (225)
Q Consensus 129 ~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~v---i~~~~~~~~~~~ 204 (225)
++++++|...... ..+...++++.+.-.. ...+.+.+-+..+..+........+........+ .+....+++++.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVK 160 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHH
Confidence 7888888765322 1122222222221111 1345555434443333333322222222222233 334467888888
Q ss_pred HHHhc
Q psy2924 205 DVVEG 209 (225)
Q Consensus 205 ~~~~~ 209 (225)
+.+..
T Consensus 161 ~~l~~ 165 (168)
T cd01897 161 NKACE 165 (168)
T ss_pred HHHHH
Confidence 76654
No 413
>KOG0062|consensus
Probab=99.30 E-value=9.2e-12 Score=111.01 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=39.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecC-----ChHHHHHHHhccc
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDA-----TSDDLIDVVEGNR 211 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~-----~~~~~~~~~~~~~ 211 (225)
.|..|.|||||+.||..+..++-+.+..+..+ ++++|+. .+.+++..-+..+
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 45566699999999999999999999988765 7778874 3555555544433
No 414
>PLN03232 ABC transporter C family member; Provisional
Probab=99.30 E-value=2.3e-12 Score=130.89 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
...+|+||++++ |+.++|+|++|||||||+++|+|.++|
T Consensus 631 ~vL~~inl~i~~--Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1495)
T PLN03232 631 PTLSDINLEIPV--GSLVAIVGGTGEGKTSLISAMLGELSH 669 (1495)
T ss_pred ceeeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 357899999999 999999999999999999999999988
No 415
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=8.2e-11 Score=105.91 Aligned_cols=150 Identities=24% Similarity=0.221 Sum_probs=99.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~ 128 (225)
.++|+|.+|||||||+|.|+|... .+.++|++|++...+.+.++|..+.++||||....... ...+..+....+..+|
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad 82 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEAD 82 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence 689999999999999999999875 57889999999999999999999999999998652110 0112334455678899
Q ss_pred eEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHH
Q psy2924 129 LIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDL 203 (225)
Q Consensus 129 ~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~ 203 (225)
++++++|+..... ....+.+.+... ..+.+.+-+.++..+.. ..+.+.+ .++ ..+...|+.+++++
T Consensus 83 ~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 83 VILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHGRGIGDL 153 (435)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCCCCHHHH
Confidence 9999999876422 223444555553 34445544444432211 1112222 222 12555666788888
Q ss_pred HHHHhc
Q psy2924 204 IDVVEG 209 (225)
Q Consensus 204 ~~~~~~ 209 (225)
++.+..
T Consensus 154 ~~~I~~ 159 (435)
T PRK00093 154 LDAILE 159 (435)
T ss_pred HHHHHh
Confidence 766643
No 416
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=111.46 Aligned_cols=141 Identities=19% Similarity=0.194 Sum_probs=85.7
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc-CceEEEEeCCCCCCCccCCcc
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~ 115 (225)
.++.+|++++ |+.+-|.|+||||||||+++|+|+.+- -+|.|.+. +.++.++... +..+.+
T Consensus 409 l~~l~~~v~~--G~~llI~G~SG~GKTsLlRaiaGLWP~-----------g~G~I~~P~~~~~lflpQ~-----PY~p~G 470 (604)
T COG4178 409 LSELNFEVRP--GERLLITGESGAGKTSLLRALAGLWPW-----------GSGRISMPADSALLFLPQR-----PYLPQG 470 (604)
T ss_pred eccceeeeCC--CCEEEEECCCCCCHHHHHHHHhccCcc-----------CCCceecCCCCceEEecCC-----CCCCCc
Confidence 3456788888 999999999999999999999999975 56777665 3334433311 111112
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--------cCC---------------------CCCcccc
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--------LNK---------------------EPPNIDN 166 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--------~~~---------------------~~~~lsl 166 (225)
-.++.. .+++..- . -..+.+.+.|..+++. .++ +|..+.+
T Consensus 471 tLre~l-~YP~~~~---------~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~L 539 (604)
T COG4178 471 TLREAL-CYPNAAP---------D-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFL 539 (604)
T ss_pred cHHHHH-hCCCCCC---------C-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEE
Confidence 112211 2221110 0 1123344445554441 112 2333349
Q ss_pred cCCCCCCCHHHHHHHHHHhhhc--CCe-EEEeecCChHHHHHH
Q psy2924 167 QVPQSELDLDTVKTILSEYRIH--NAD-ITLRYDATSDDLIDV 206 (225)
Q Consensus 167 DEp~~~LD~~~~~~i~~~l~~~--~~~-vi~~~~~~~~~~~~~ 206 (225)
||.|++||+++...+++.+++. ..+ |.+.|...+..+...
T Consensus 540 DEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 540 DEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred ecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 9999999999999999999883 333 556666666655544
No 417
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.29 E-value=5.4e-11 Score=107.20 Aligned_cols=91 Identities=32% Similarity=0.374 Sum_probs=73.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc-chHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK-GRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~ 126 (225)
|..++|+|++|||||||+|.+++... .++++|+||++...+.+.++|.++.++||||......... ....+....++.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~ 282 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQ 282 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhh
Confidence 77899999999999999999999765 6899999999999999999999999999999864321100 011223456678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
+|++++++|...+
T Consensus 283 aD~il~V~D~s~~ 295 (442)
T TIGR00450 283 ADLVIYVLDASQP 295 (442)
T ss_pred CCEEEEEEECCCC
Confidence 9999999998754
No 418
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.29 E-value=1.2e-10 Score=89.50 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=65.4
Q ss_pred EEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc--chHHHHHHHHhCCCeEE
Q psy2924 54 FVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK--GRGRQVIAVARTCSLIF 131 (225)
Q Consensus 54 IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l 131 (225)
|+|.+|||||||+|.++|....++.+|++|++...+.+.+++..+.++|+||......... .+....... +.+++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 5899999999999999998777889999999998999999999999999999864332211 111111111 5789999
Q ss_pred EEeeCCCc
Q psy2924 132 IVLDVLKP 139 (225)
Q Consensus 132 ~~~d~~~~ 139 (225)
+++|....
T Consensus 80 ~v~d~~~~ 87 (158)
T cd01879 80 NVVDATNL 87 (158)
T ss_pred EEeeCCcc
Confidence 99998754
No 419
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.4e-13 Score=120.10 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=95.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||+++. |+.++++|++|+||||+++.|.+++.+ .+|.|.++|+++..+... ..+..
T Consensus 276 r~iL~~isf~i~~--g~tvAiVg~SG~gKsTI~rllfRFyD~-----------~sG~I~id~qdir~vtq~----slR~a 338 (497)
T COG5265 276 RPILNGISFTIPL--GKTVAIVGESGAGKSTILRLLFRFYDV-----------NSGSITIDGQDIRDVTQQ----SLRRA 338 (497)
T ss_pred chhhcCccccccC--ccEEEEEeCCCCcHHHHHHHHHHHhCC-----------cCceEEEcchhHHHhHHH----HHHHH
Confidence 4567899999999 999999999999999999999999998 999999999987543321 12222
Q ss_pred cchHHHHHHHHhC---------------------------CCeEEEEeeC------------CCccccH-HHHHHHHHhc
Q psy2924 114 KGRGRQVIAVART---------------------------CSLIFIVLDV------------LKPLGHK-KLIEHELEGF 153 (225)
Q Consensus 114 ~~~~~~~~~~~~~---------------------------~~~~l~~~d~------------~~~~~~~-~~~~~~l~~~ 153 (225)
+++++|.-.++-+ .+++...-++ ...++++ ..+..+|
T Consensus 339 Ig~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il--- 415 (497)
T COG5265 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL--- 415 (497)
T ss_pred hCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh---
Confidence 3333332211111 0000000000 0001100 1111122
Q ss_pred ccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeec----CChHHHHHHHhcccc
Q psy2924 154 GLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA---DITLRYD----ATSDDLIDVVEGNRI 212 (225)
Q Consensus 154 ~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~----~~~~~~~~~~~~~~~ 212 (225)
+.|+.+.+||.|++||....++|...+..... ++++.|. .++|+++.+.+|.++
T Consensus 416 -----k~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 416 -----KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred -----cCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 45777889999999999988888888877532 3666664 245555544444443
No 420
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.28 E-value=9e-12 Score=112.17 Aligned_cols=168 Identities=16% Similarity=0.225 Sum_probs=113.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
...+.++||++.+ ||++||.|--|+|+|-|+++|.|..++ ..|+|.++|+++...++. ...+.+
T Consensus 272 ~~~~~dvSf~vr~--GEIlGiaGLvGaGRTEl~~~lfG~~~~-----------~~G~i~l~G~~v~~~sp~---~Ai~~G 335 (500)
T COG1129 272 GGKVRDVSFTVRA--GEILGIAGLVGAGRTELARALFGARPA-----------SSGEILLDGKPVRIRSPR---DAIKAG 335 (500)
T ss_pred CCceeCceeEEeC--CcEEEEeccccCCHHHHHHHHhCCCcC-----------CCceEEECCEEccCCCHH---HHHHcC
Confidence 3347899999999 999999999999999999999998877 899999999988654421 011112
Q ss_pred cchHHHH---------HHHHhCCCeEEEEee------CCCccccHHHHHHHHHhcccc---cCCCCCccc----------
Q psy2924 114 KGRGRQV---------IAVARTCSLIFIVLD------VLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------- 165 (225)
Q Consensus 114 ~~~~~~~---------~~~~~~~~~~l~~~d------~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------- 165 (225)
++++... ..+.+|..+. .+. ........+.+.++.+.+++. .+.....||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~--~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLA--SLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehH--hhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 2222111 1122222211 011 111223345567777888773 333444455
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEec
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+||||.|+|.....+|++.+.++.. .|+++|+. ++|++.++|..+++..+.++.
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-LPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC-hHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999988743 35554444 789999999988887766654
No 421
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.28 E-value=6.3e-11 Score=95.96 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=29.6
Q ss_pred CCCCCCCceeeccCCe-eEEEEcCCCCCHHHHHHHHh
Q psy2924 35 GGGPGEGFDVAKTGDA-RIGFVGFPSVGKSTLLSTLA 70 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~-~v~IiG~nGaGKSTLln~l~ 70 (225)
+..-+++|++.. |+ +++|+||||+|||||+++|.
T Consensus 15 ~~~~~~~~~i~~--~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 15 EKVVPLDIQLGE--NKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CceEcceEEECC--CceEEEEECCCCCChHHHHHHHH
Confidence 345578899988 85 69999999999999999998
No 422
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.26 E-value=1.5e-10 Score=105.46 Aligned_cols=155 Identities=22% Similarity=0.232 Sum_probs=97.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc--hHH--HHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG--RGR--QVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~--~~~~~ 123 (225)
...++|+|++|||||||+|+|++... .++++|+||+++....+.++|..+.++||||++...+...+ +.. .....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 45899999999999999999999875 57899999999999999999999999999998654332211 111 11235
Q ss_pred HhCCCeEEEEeeCCCccccH-HHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHH----HHHHHhhhcC-CeEEEee-
Q psy2924 124 ARTCSLIFIVLDVLKPLGHK-KLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVK----TILSEYRIHN-ADITLRY- 196 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~~~~-~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~----~i~~~l~~~~-~~vi~~~- 196 (225)
+++++++++++|+....... ..+...+.. ...+.+.+-++.+-.+..... .+.+.+.... ..++.+|
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQRVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 67899999999987642211 111111211 234555555555544432222 2222232221 2333333
Q ss_pred --cCChHHHHHHHhc
Q psy2924 197 --DATSDDLIDVVEG 209 (225)
Q Consensus 197 --~~~~~~~~~~~~~ 209 (225)
+.++++++..+..
T Consensus 365 k~g~gv~~lf~~i~~ 379 (472)
T PRK03003 365 KTGRAVDKLVPALET 379 (472)
T ss_pred CCCCCHHHHHHHHHH
Confidence 4677777766543
No 423
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.26 E-value=9.7e-12 Score=104.15 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhc
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEG 209 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~ 209 (225)
++..+.+||||++||+...+.+++.+.++. .. |+++|. .++.+..|.
T Consensus 188 ~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~---~~~~~~~d~ 237 (251)
T cd03273 188 PAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK---EGMFNNANV 237 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC---HHHHHhCCE
Confidence 445677999999999999999999887753 33 445555 455555543
No 424
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.26 E-value=2.5e-10 Score=102.77 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=101.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch----HHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR----GRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~~ 123 (225)
.-.++|+|.+|+|||||+|+|+|... .+++.|+||++.....+.+++..+.++|+||+.......... ..+....
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 56899999999999999999999875 688999999998877788899999999999987544332111 1223446
Q ss_pred HhCCCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc-----CCeEEEee-
Q psy2924 124 ARTCSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH-----NADITLRY- 196 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~-----~~~vi~~~- 196 (225)
++.+|++++++|+..+... ...+...+... ..+.+.+-++.+..+.....++.+.+... ...++.+|
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~------~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQDLRIAGLALEA------GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 6789999999998765222 22222333221 34555556666655655555554444332 12344444
Q ss_pred --cCChHHHHHHHh
Q psy2924 197 --DATSDDLIDVVE 208 (225)
Q Consensus 197 --~~~~~~~~~~~~ 208 (225)
..+++++++.+.
T Consensus 327 ~~~~gv~~l~~~i~ 340 (435)
T PRK00093 327 LTGQGVDKLLEAID 340 (435)
T ss_pred CCCCCHHHHHHHHH
Confidence 467777766543
No 425
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.25 E-value=2.6e-11 Score=100.77 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=36.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccc
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+++.+.+||||++||+...+.+++.+.++. ..++++|.. .++...++..+..
T Consensus 180 ~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~--~~~~~~~d~i~~l 233 (243)
T cd03272 180 PAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR--PELLEVADKFYGV 233 (243)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC--HHHHhhCCEEEEE
Confidence 467888999999999999999999988863 234443433 4455666654444
No 426
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.25 E-value=3.8e-12 Score=103.17 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=25.5
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+++.. |++++|+||||||||||+++|+|..
T Consensus 20 i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 20 IDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 34445 6899999999999999999998854
No 427
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.25 E-value=5.8e-10 Score=85.70 Aligned_cols=154 Identities=24% Similarity=0.283 Sum_probs=94.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC-cchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG-KGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~ 127 (225)
.+++++|++|||||||+|.++|... .+.+.+.+|+....+.+...+.++.++|+||........ ..........+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999865 456677788777777666666788999999976432211 11112233456778
Q ss_pred CeEEEEeeCCCc-cccHHHHHHHHHhcccccCCCCCcccccCCCCCC-CHHHHHHHHHHhhhcC--CeEEE---eecCCh
Q psy2924 128 SLIFIVLDVLKP-LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSEL-DLDTVKTILSEYRIHN--ADITL---RYDATS 200 (225)
Q Consensus 128 ~~~l~~~d~~~~-~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~L-D~~~~~~i~~~l~~~~--~~vi~---~~~~~~ 200 (225)
+.++++++...+ ......+.+.+... ..+.+.+-.+.+.. ++......++.+.... ..++. ....++
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 888888888765 22233343444332 23334434444444 3445555555555433 23332 334678
Q ss_pred HHHHHHHhc
Q psy2924 201 DDLIDVVEG 209 (225)
Q Consensus 201 ~~~~~~~~~ 209 (225)
+++...+..
T Consensus 158 ~~l~~~l~~ 166 (168)
T cd04163 158 DELLEEIVK 166 (168)
T ss_pred HHHHHHHHh
Confidence 887766543
No 428
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.24 E-value=3e-10 Score=87.03 Aligned_cols=146 Identities=22% Similarity=0.205 Sum_probs=90.4
Q ss_pred EEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCcc-CCcchHHHHHHHHhCCCeE
Q psy2924 53 GFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK-DGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 53 ~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 130 (225)
+++|.+|+|||||+|.|++... .++++|++|++.....+.+.+..+.++|+||...... ....+..+....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999999754 5778999999888888888899999999999865332 0111222334556789999
Q ss_pred EEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCC-eEEEe---ecCChHHHHH
Q psy2924 131 FIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNA-DITLR---YDATSDDLID 205 (225)
Q Consensus 131 l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~-~vi~~---~~~~~~~~~~ 205 (225)
+++++...... ....+...+... ..+.+.+-++.+..+....... +..... .++.+ ...+++++++
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~------~~piiiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKS------KKPVILVVNKVDNIKEEDEAAE---FYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhc------CCCEEEEEECcccCChHHHHHH---HHhcCCCCeEEEecccCCCHHHHHH
Confidence 99988765422 122334444433 2444444444443333322222 222222 33333 3457777765
Q ss_pred HH
Q psy2924 206 VV 207 (225)
Q Consensus 206 ~~ 207 (225)
.+
T Consensus 152 ~l 153 (157)
T cd01894 152 AI 153 (157)
T ss_pred HH
Confidence 54
No 429
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.22 E-value=2.6e-10 Score=103.79 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=97.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 127 (225)
..|+|+|++|||||||+|.|++... .+.+.|++|++...+.+.++|..+.++|+||....... ...+..+....+..+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 118 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA 118 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999754 57889999999999999999999999999997532211 112233445567889
Q ss_pred CeEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHH-HHHHHHHHhhhcCC--eEEEeecCChHHH
Q psy2924 128 SLIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLD-TVKTILSEYRIHNA--DITLRYDATSDDL 203 (225)
Q Consensus 128 ~~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~-~~~~i~~~l~~~~~--~vi~~~~~~~~~~ 203 (225)
|++++++|...... ....+.+.+... ..+.+.+-++.+..+.. ....... + .+.. .+...|+.+++++
T Consensus 119 D~il~VvD~~~~~s~~~~~i~~~l~~~------~~piilV~NK~Dl~~~~~~~~~~~~-~-g~~~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 119 DAVLFVVDATVGATATDEAVARVLRRS------GKPVILAANKVDDERGEADAAALWS-L-GLGEPHPVSALHGRGVGDL 190 (472)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECccCCccchhhHHHHh-c-CCCCeEEEEcCCCCCcHHH
Confidence 99999999876422 123344444432 34444433443322211 1111111 1 1122 2555667788888
Q ss_pred HHHHhcc
Q psy2924 204 IDVVEGN 210 (225)
Q Consensus 204 ~~~~~~~ 210 (225)
++.+...
T Consensus 191 ~~~i~~~ 197 (472)
T PRK03003 191 LDAVLAA 197 (472)
T ss_pred HHHHHhh
Confidence 7766543
No 430
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.21 E-value=5.3e-10 Score=100.43 Aligned_cols=154 Identities=22% Similarity=0.232 Sum_probs=100.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC--cc--hHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG--KG--RGRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~--~~~~~~~~ 123 (225)
...++++|.+|+|||||+|.++|... .++++|+||+++....+.+++..+.++|+||+....... .. ...+....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 35799999999999999999999765 578999999999888888899999999999987544321 11 11223456
Q ss_pred HhCCCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCC-CHHHHHHHHHHhhhc----C-CeEEEee
Q psy2924 124 ARTCSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSEL-DLDTVKTILSEYRIH----N-ADITLRY 196 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~L-D~~~~~~i~~~l~~~----~-~~vi~~~ 196 (225)
++.+|++++++|....... ...+...+.. ...+.+.+-++.+.+ +....+.+.+.+... . ..++.+|
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLRIAGLILE------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHHHHHHHHH------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 7889999999998765222 1222222222 134555555555555 444444554444332 1 2344444
Q ss_pred ---cCChHHHHHHHh
Q psy2924 197 ---DATSDDLIDVVE 208 (225)
Q Consensus 197 ---~~~~~~~~~~~~ 208 (225)
+.+++++++.+.
T Consensus 326 A~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 326 ALTGQGVDKLLDAID 340 (429)
T ss_pred CCCCCCHHHHHHHHH
Confidence 457777765543
No 431
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.21 E-value=4.9e-10 Score=106.74 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=101.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~ 126 (225)
-..|+|+|.+|||||||+|.|+|... .++++|++|++...+...+++..+.++||||+...... ...+..+....++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 35799999999999999999999765 57889999999999999999999999999997632111 11234555667789
Q ss_pred CCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhh-hcCC--eEEEeecCChHH
Q psy2924 127 CSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYR-IHNA--DITLRYDATSDD 202 (225)
Q Consensus 127 ~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~-~~~~--~vi~~~~~~~~~ 202 (225)
+|++++++|+...... ...+.+.++.. ..+.+.+-+..+..+.... ..+.+. .... .+...|+.++++
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~------~~pvIlV~NK~D~~~~~~~--~~~~~~lg~~~~~~iSA~~g~GI~e 426 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRA------GKPVVLAVNKIDDQASEYD--AAEFWKLGLGEPYPISAMHGRGVGD 426 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEECcccccchhh--HHHHHHcCCCCeEEEECCCCCCchH
Confidence 9999999998754222 22344444432 3455554455544332211 111111 1122 255556678888
Q ss_pred HHHHHhcc
Q psy2924 203 LIDVVEGN 210 (225)
Q Consensus 203 ~~~~~~~~ 210 (225)
+.+.+...
T Consensus 427 Ll~~i~~~ 434 (712)
T PRK09518 427 LLDEALDS 434 (712)
T ss_pred HHHHHHHh
Confidence 87665543
No 432
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.21 E-value=4e-10 Score=107.30 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=98.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc--h--HHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG--R--GRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~--~~~~~~~ 123 (225)
-..++|+|++|||||||+|.|++... .++++|+||+++....+.++|.++.++||||+....+...+ + .......
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 35899999999999999999999876 57899999999998888999999999999998754433211 1 0112344
Q ss_pred HhCCCeEEEEeeCCCccccH-HHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhh----c-CCeEEEee-
Q psy2924 124 ARTCSLIFIVLDVLKPLGHK-KLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRI----H-NADITLRY- 196 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~~~~-~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~----~-~~~vi~~~- 196 (225)
++.++++++++|+....... ..+...+.. ...+.+.+-++.+-.+....+.+.+.+.. . ...++.+|
T Consensus 530 i~~advvilViDat~~~s~~~~~i~~~~~~------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLKVMSMAVD------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 67899999999987652211 112222222 13455555555555544333333333322 1 12233333
Q ss_pred --cCChHHHHHHHhc
Q psy2924 197 --DATSDDLIDVVEG 209 (225)
Q Consensus 197 --~~~~~~~~~~~~~ 209 (225)
+.+++++++.+..
T Consensus 604 ktg~gv~~L~~~i~~ 618 (712)
T PRK09518 604 KTGWHTNRLAPAMQE 618 (712)
T ss_pred CCCCCHHHHHHHHHH
Confidence 4677777766544
No 433
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.19 E-value=1.3e-10 Score=93.74 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=64.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccc--cccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHH----HHHH
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAA--YEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQV----IAVA 124 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~--~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~----~~~~ 124 (225)
.++|+|++|||||||+|.|+|.....+. .+++|+.+..+...++|..+.++||||+.............. ....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 5899999999999999999998764333 467788888888888999999999999886432211111111 1223
Q ss_pred hCCCeEEEEeeCCC
Q psy2924 125 RTCSLIFIVLDVLK 138 (225)
Q Consensus 125 ~~~~~~l~~~d~~~ 138 (225)
+..++++++++...
T Consensus 82 ~g~~~illVi~~~~ 95 (196)
T cd01852 82 PGPHAFLLVVPLGR 95 (196)
T ss_pred CCCEEEEEEEECCC
Confidence 56788888887654
No 434
>KOG0927|consensus
Probab=99.16 E-value=4.3e-11 Score=107.37 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=38.5
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
++.+..-.++..|++.+ |+++||+|+|||||||+|++|+|-..|
T Consensus 84 s~~g~~l~kd~~~El~~--g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 84 SFHGVELIKDVTLELNR--GRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred ccCCceeeeeeeEEecC--CceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 44555566778899999 999999999999999999999999887
No 435
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.16 E-value=3.4e-09 Score=82.17 Aligned_cols=90 Identities=28% Similarity=0.407 Sum_probs=68.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch----HHHHHHHH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR----GRQVIAVA 124 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~~~ 124 (225)
..++++|.+|+|||||+|.|++... ...++|++|++...+.+..++.++.++|+||........... ..+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 4699999999999999999999764 567789999888778888899999999999976432211111 12233455
Q ss_pred hCCCeEEEEeeCCCc
Q psy2924 125 RTCSLIFIVLDVLKP 139 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~ 139 (225)
..+++++.++|...+
T Consensus 83 ~~~d~vi~v~d~~~~ 97 (174)
T cd01895 83 ERADVVLLVIDATEG 97 (174)
T ss_pred hhcCeEEEEEeCCCC
Confidence 688999999988665
No 436
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.14 E-value=4.7e-10 Score=85.80 Aligned_cols=91 Identities=29% Similarity=0.376 Sum_probs=70.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~ 126 (225)
|..++++|++|+|||||++.+++... .+.++|++|.+...+.+.+.+.++.++|+||....... ......+....+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 46899999999999999999999765 46789999998888888888889999999997643221 00112233455678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
+++++.++|...+
T Consensus 81 ~~~~v~v~d~~~~ 93 (157)
T cd04164 81 ADLVLFVIDASRG 93 (157)
T ss_pred CCEEEEEEECCCC
Confidence 8999999988754
No 437
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.14 E-value=1.3e-09 Score=84.85 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=59.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcccc----ccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVA----AYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~----~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.++++|++|||||||++.+++...+.. ....+|.....+.+.+++..+.++|+||.... .......+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL-------RSLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-------HHHHHHHhCC
Confidence 378999999999999999988654311 12244555566788888899999999986431 1223456788
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 74 ~~~~v~vvd~~~~ 86 (167)
T cd04160 74 CHAIIYVIDSTDR 86 (167)
T ss_pred CCEEEEEEECchH
Confidence 9999999998654
No 438
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.12 E-value=1e-09 Score=102.33 Aligned_cols=84 Identities=27% Similarity=0.398 Sum_probs=65.4
Q ss_pred cCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc-chHHHHHHHHhCCCeEEEEe
Q psy2924 56 GFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK-GRGRQVIAVARTCSLIFIVL 134 (225)
Q Consensus 56 G~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 134 (225)
|.+|||||||+|.++|....+++||++|++...|.+.+++..+.++|+||......... ..+.........+|+++.++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999999888999999999999999999999999999999875432211 11111112234689999999
Q ss_pred eCCCc
Q psy2924 135 DVLKP 139 (225)
Q Consensus 135 d~~~~ 139 (225)
|....
T Consensus 81 Dat~l 85 (591)
T TIGR00437 81 DASNL 85 (591)
T ss_pred cCCcc
Confidence 98754
No 439
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.11 E-value=5.1e-10 Score=94.21 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=30.5
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHh
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLA 70 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~ 70 (225)
...++++++|+. |..++|+|++|||||||++.+.
T Consensus 9 ~nl~~v~~~ip~--g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 9 NNLKNIDVDIPL--GVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred hcCCCceeeccC--CcEEEEECCCCCchHHHHHHHH
Confidence 347789999999 9999999999999999999763
No 440
>KOG0410|consensus
Probab=99.11 E-value=2.7e-10 Score=96.64 Aligned_cols=138 Identities=24% Similarity=0.290 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc
Q psy2924 15 GLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK 94 (225)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~ 94 (225)
+..|.+..++|+++++.+.++.. .....-.+ -..|++||..|||||||+|+|++....-.+-.|.|.||+.-...+.
T Consensus 147 rllr~kea~lrKeL~~vrrkr~~-r~gr~~~s--~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 147 RLLRIKEAQLRKELQRVRRKRQR-RVGREGES--SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP 223 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhccccCC--CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC
Confidence 45667888999999988887622 23333333 5589999999999999999999866545677889999987666554
Q ss_pred -CceEEEEeCCCCCCCccCCcchHHHH-HHHHhCCCeEEEEeeCCCc--cccHHHHHHHHHhccc
Q psy2924 95 -GAKIQLLDLPGIIEGAKDGKGRGRQV-IAVARTCSLIFIVLDVLKP--LGHKKLIEHELEGFGL 155 (225)
Q Consensus 95 -g~~i~~~d~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~l~~~~l 155 (225)
|..+-+.||-|+....+...-..++. +..+-.+|+++++.|.+.| +++++-+...|+.+|+
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv 288 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGV 288 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCC
Confidence 56677789988876544332222221 2334568999999999887 4456667888888887
No 441
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.11 E-value=3.5e-09 Score=84.41 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=61.9
Q ss_pred CCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHH
Q psy2924 40 EGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQ 119 (225)
Q Consensus 40 is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 119 (225)
+++.... . .++|+|++|||||||++.+.+-... . ..+|..+..+.+.+++..+..+|+||.... ...
T Consensus 13 ~~~~~~~--~-ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~~ 79 (190)
T cd00879 13 LGLYNKE--A-KILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIGNIKFKTFDLGGHEQA-------RRL 79 (190)
T ss_pred hhcccCC--C-EEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEECCEEEEEEECCCCHHH-------HHH
Confidence 3444333 3 6799999999999999999985431 1 233556677889999999999999985321 112
Q ss_pred HHHHHhCCCeEEEEeeCCCc
Q psy2924 120 VIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 120 ~~~~~~~~~~~l~~~d~~~~ 139 (225)
....+..++.+++++|....
T Consensus 80 ~~~~~~~ad~iilV~D~~~~ 99 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADP 99 (190)
T ss_pred HHHHhccCCEEEEEEECCcH
Confidence 23456788999999998754
No 442
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.10 E-value=1.9e-09 Score=84.46 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=55.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccce----EEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG----CIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVA 124 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G----~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 124 (225)
.-.++|+|++|||||||++.+.+.... +..++.| .+.+++..+.++|++|... +.......+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-------~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~ 79 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-------HITPTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF 79 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-------ccCCCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh
Confidence 357999999999999999999997431 1122445 6778888999999988532 112233456
Q ss_pred hCCCeEEEEeeCCCc
Q psy2924 125 RTCSLIFIVLDVLKP 139 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~ 139 (225)
+.++++++++|....
T Consensus 80 ~~~~~ii~v~D~~~~ 94 (173)
T cd04155 80 ENTDCLIYVIDSADK 94 (173)
T ss_pred cCCCEEEEEEeCCCH
Confidence 788999999988653
No 443
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.10 E-value=3.8e-10 Score=91.47 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=29.0
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.-..++++.. |++++|+||||+|||||+++|++..
T Consensus 19 ~~~~~~~l~~--~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 19 FVPNDINLGS--GRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEeeeEEEcC--CeEEEEECCCCCccHHHHHHHHHHH
Confidence 3345666777 8999999999999999999999543
No 444
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.10 E-value=5.9e-09 Score=80.46 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=63.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.++++|++|||||||++.+.+.....+..|.++.+.....+.+++. .+.++|+||... +.......+..++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccCC
Confidence 5899999999999999999988766677788888877777878774 467899998432 1122344567889
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 75 ~ii~v~d~~~~ 85 (161)
T cd01861 75 VAVVVYDITNR 85 (161)
T ss_pred EEEEEEECcCH
Confidence 99999988654
No 445
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.09 E-value=7.7e-09 Score=82.71 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=93.8
Q ss_pred CCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch---HHHHH-
Q psy2924 48 GDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR---GRQVI- 121 (225)
Q Consensus 48 ~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~---~~~~~- 121 (225)
...-|+++|++|+|||||+|+|+|.. ..+|.-||.|+.+. ...+++. +.++|.||+-. +.-.... +.+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iN--ff~~~~~-~~lVDlPGYGy-Akv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLIN--FFEVDDE-LRLVDLPGYGY-AKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeE--EEEecCc-EEEEeCCCccc-ccCCHHHHHHHHHHHH
Confidence 46679999999999999999999976 46898999887653 2333433 77899999753 3222222 11111
Q ss_pred -HHHhC--CCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhh-c----CCe-
Q psy2924 122 -AVART--CSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRI-H----NAD- 191 (225)
Q Consensus 122 -~~~~~--~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~-~----~~~- 191 (225)
++-.+ ...+..++|++.+... ...+.+.+...+ .+.+.+-...+-+........+..+.+ + ...
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~------i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELG------IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 11122 3345677898876433 445666676664 456666677777776555444444432 1 111
Q ss_pred -EEEeec---CChHHHHHHHhcc
Q psy2924 192 -ITLRYD---ATSDDLIDVVEGN 210 (225)
Q Consensus 192 -vi~~~~---~~~~~~~~~~~~~ 210 (225)
+++.+. .++++++..+...
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHH
Confidence 444332 5788888776543
No 446
>KOG0054|consensus
Probab=99.09 E-value=2.8e-10 Score=112.74 Aligned_cols=48 Identities=27% Similarity=0.442 Sum_probs=45.3
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
..+|+||++++ |+.+||+|+.||||||||.+|+|..+. .+|.+.++|.
T Consensus 536 tL~dIn~~i~~--G~lvaVvG~vGsGKSSLL~AiLGEm~~-----------~sG~v~v~gs 583 (1381)
T KOG0054|consen 536 TLKDINFEIKK--GQLVAVVGPVGSGKSSLLSAILGEMPK-----------LSGSVAVNGS 583 (1381)
T ss_pred cccceeEEecC--CCEEEEECCCCCCHHHHHHHHhcCccc-----------ccceEEEcCe
Confidence 67899999999 999999999999999999999999998 8899988886
No 447
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.08 E-value=4.7e-11 Score=97.66 Aligned_cols=47 Identities=11% Similarity=0.232 Sum_probs=33.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcCC--e-EEEeecCChHHHHHHHhc
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHNA--D-ITLRYDATSDDLIDVVEG 209 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~-vi~~~~~~~~~~~~~~~~ 209 (225)
+++.+.+|||+++||+.....+.+.+.++.. . |+++|. +++...+|.
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~---~~~~~~~d~ 198 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR---NNMFELADR 198 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc---HHHHHhCCE
Confidence 4567889999999999999999999888742 3 555544 344444443
No 448
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.07 E-value=1.5e-08 Score=78.11 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=59.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc---cccccccceeeccceEEEEc-CceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS---EVAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~---~v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.++|+|++|||||||+|+++|... +....+++|.+.....+.+. +..+.++|+||... +.......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhhc
Confidence 589999999999999999998532 11223566777766677776 78899999999632 12223345678
Q ss_pred CCeEEEEeeCCC
Q psy2924 127 CSLIFIVLDVLK 138 (225)
Q Consensus 127 ~~~~l~~~d~~~ 138 (225)
+|++++++|...
T Consensus 75 ad~ii~V~d~~~ 86 (164)
T cd04171 75 IDLVLLVVAADE 86 (164)
T ss_pred CCEEEEEEECCC
Confidence 999999999865
No 449
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.06 E-value=9.8e-10 Score=89.84 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCCCCceee-ccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 37 GPGEGFDVA-KTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 37 ~~~is~~i~-~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
..+++|... + |++++|+|+||||||||+++|++.
T Consensus 17 ~~~i~~~~~~~--~~~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 17 EQVIDFTGLDN--NGLFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred ceEEeCCCCCc--cCEEEEECCCCCCHHHHHHHheee
Confidence 355666543 3 779999999999999999999964
No 450
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.03 E-value=6.2e-09 Score=83.19 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=83.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc---ch---HHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK---GR---GRQV 120 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~---~~---~~~~ 120 (225)
...++|+|.+|||||||+|.+++.. ..++..+++|++..... + +.++.++|+||+........ .+ ....
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 4579999999999999999999953 45677778877654322 2 46788999999653211110 00 1111
Q ss_pred HHHHhCCCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHh----hhcCCeEEEe
Q psy2924 121 IAVARTCSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEY----RIHNADITLR 195 (225)
Q Consensus 121 ~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l----~~~~~~vi~~ 195 (225)
.......+++++++|...+... ...+.+.++.. ..+.+.+.++.+.++....+.+.+.+ ......++.+
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 1122234556666665543222 22334444433 23334455566666654444433333 2222234444
Q ss_pred e---cCChHHHHHHHh
Q psy2924 196 Y---DATSDDLIDVVE 208 (225)
Q Consensus 196 ~---~~~~~~~~~~~~ 208 (225)
+ ..+++++.+.+.
T Consensus 175 Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 175 SSLKKQGIDELRAAIA 190 (196)
T ss_pred EcCCCCCHHHHHHHHH
Confidence 4 457777776654
No 451
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.01 E-value=1.7e-08 Score=76.41 Aligned_cols=57 Identities=40% Similarity=0.378 Sum_probs=48.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGII 107 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~ 107 (225)
+++++|.+|+|||||++.+.+...+....+++|.+.....+.+++ ..+.++|+||..
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 689999999999999999999887777778888887777788888 667889999843
No 452
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.99 E-value=1.7e-08 Score=76.97 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=53.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEE
Q psy2924 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIF 131 (225)
Q Consensus 52 v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 131 (225)
++|+|++|||||||+|++.+........| | .......+..++..+..+|+||.... .......+..+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~-t-~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ii 72 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP-T-VGFNMRKVTKGNVTLKVWDLGGQPRF-------RSMWERYCRGVNAIV 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC-C-CCcceEEEEECCEEEEEEECCCCHhH-------HHHHHHHHhcCCEEE
Confidence 79999999999999999999754322222 2 11222345556667888999985321 122345567889999
Q ss_pred EEeeCCCc
Q psy2924 132 IVLDVLKP 139 (225)
Q Consensus 132 ~~~d~~~~ 139 (225)
+++|....
T Consensus 73 ~v~d~~~~ 80 (159)
T cd04159 73 YVVDAADR 80 (159)
T ss_pred EEEECCCH
Confidence 99988653
No 453
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.99 E-value=2.7e-08 Score=76.76 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=81.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
+++++|++|||||||++.+.+........+..+.+...-.+.+++. .+.++|+||... +.......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhCCCC
Confidence 5899999999999999999987654333333333333344566663 567889988532 1122344567899
Q ss_pred eEEEEeeCCCccccHHHHHHHHHhcccccCCCCCccc----ccCCC-CCCCHHHHHHHHHHhhhcCCeEE---EeecCCh
Q psy2924 129 LIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNID----NQVPQ-SELDLDTVKTILSEYRIHNADIT---LRYDATS 200 (225)
Q Consensus 129 ~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~ls----lDEp~-~~LD~~~~~~i~~~l~~~~~~vi---~~~~~~~ 200 (225)
++++++|...+.. .+.+..++..+........+.+. .|.+- ...+....+.+.+ ..+..++ ..++.++
T Consensus 75 ~~ilv~d~~~~~s-~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~~~i 150 (164)
T smart00175 75 GALLVYDITNRES-FENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE---EHGLPFFETSAKTNTNV 150 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH---HcCCeEEEEeCCCCCCH
Confidence 9999998875432 12222233332211112344433 44322 3445544444443 2333333 3334578
Q ss_pred HHHHHHHh
Q psy2924 201 DDLIDVVE 208 (225)
Q Consensus 201 ~~~~~~~~ 208 (225)
+++++.+.
T Consensus 151 ~~l~~~i~ 158 (164)
T smart00175 151 EEAFEELA 158 (164)
T ss_pred HHHHHHHH
Confidence 88776654
No 454
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.99 E-value=3.2e-08 Score=74.89 Aligned_cols=87 Identities=29% Similarity=0.302 Sum_probs=65.9
Q ss_pred EEcCCCCCHHHHHHHHhCCCcc-ccccccceeeccceEEEEc-CceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEE
Q psy2924 54 FVGFPSVGKSTLLSTLAGVYSE-VAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIF 131 (225)
Q Consensus 54 IiG~nGaGKSTLln~l~g~~~~-v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 131 (225)
|+|+.|||||||+|.|++.... .+.++++|.........+. +.++.++|+||..................+..++.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999998764 7788888888777666665 6789999999987644333222234455678899999
Q ss_pred EEeeCCCcc
Q psy2924 132 IVLDVLKPL 140 (225)
Q Consensus 132 ~~~d~~~~~ 140 (225)
++++.....
T Consensus 81 ~v~~~~~~~ 89 (163)
T cd00880 81 FVVDADLRA 89 (163)
T ss_pred EEEeCCCCC
Confidence 998887653
No 455
>KOG1423|consensus
Probab=98.99 E-value=2.1e-09 Score=90.75 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=72.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc-----chHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK-----GRGRQVIA 122 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-----~~~~~~~~ 122 (225)
--.+|+||+||+|||||.|.+.|... +++..+.|||....|.+.-+..++-++||||+........ .+......
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~ 151 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRD 151 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHH
Confidence 45799999999999999999999887 8999999999999999998889999999999875432211 11112235
Q ss_pred HHhCCCeEEEEeeCCC
Q psy2924 123 VARTCSLIFIVLDVLK 138 (225)
Q Consensus 123 ~~~~~~~~l~~~d~~~ 138 (225)
.++++|+++.++|+..
T Consensus 152 a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 152 AAQNADCVVVVVDASA 167 (379)
T ss_pred HHhhCCEEEEEEeccC
Confidence 6788999999999863
No 456
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.98 E-value=4.8e-09 Score=87.85 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=53.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.-.|+++|++|+|||||+|+|+|... .++.++.+|.........++|..+.++||||+...
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 45799999999999999999999875 67788888888777777788999999999998754
No 457
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.98 E-value=9.6e-09 Score=83.53 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCCCcccccCCCCCCCHHHHH-HHHHHhhhcC----Ce-EEEeecC
Q psy2924 158 NKEPPNIDNQVPQSELDLDTVK-TILSEYRIHN----AD-ITLRYDA 198 (225)
Q Consensus 158 ~~~~~~lslDEp~~~LD~~~~~-~i~~~l~~~~----~~-vi~~~~~ 198 (225)
...++.+.+|||+++||+.... .+.+.+.++. .. ++++|+.
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 3467788899999999999888 8888887653 23 4555553
No 458
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.98 E-value=1.6e-08 Score=80.64 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=60.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
...++++|++|||||||++.+.+-.. +.+ .+|..+..+.+.+++..+.++|+||.... .......+.+++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~ad 86 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL--AQH-QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYFPEVN 86 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCC--ccc-CCccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHhCCCC
Confidence 45799999999999999999998532 222 34666677788888888999999986431 112234567899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
.+++++|...+
T Consensus 87 ~ii~vvD~~~~ 97 (184)
T smart00178 87 GIVYLVDAYDK 97 (184)
T ss_pred EEEEEEECCcH
Confidence 99999998754
No 459
>KOG0060|consensus
Probab=98.98 E-value=1.9e-09 Score=97.65 Aligned_cols=146 Identities=18% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc--C--ceEEEEeCCCCCCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK--G--AKIQLLDLPGIIEGA 110 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~--g--~~i~~~d~~g~~~~~ 110 (225)
...+++||+|+. |..+-|.||||||||+|++.+.|+.+- ..|.+... + .++.++... +.
T Consensus 449 ~lie~Ls~~V~~--g~~LLItG~sG~GKtSLlRvlggLWp~-----------~~G~l~k~~~~~~~~lfflPQr---PY- 511 (659)
T KOG0060|consen 449 LLIENLSLEVPS--GQNLLITGPSGCGKTSLLRVLGGLWPS-----------TGGKLTKPTDGGPKDLFFLPQR---PY- 511 (659)
T ss_pred eeeeeeeeEecC--CCeEEEECCCCCchhHHHHHHhccccc-----------CCCeEEecccCCCCceEEecCC---CC-
Confidence 344568999999 999999999999999999999999986 67776532 2 333333210 11
Q ss_pred cCCcchH-HHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--------cC-----CCCCccc-----------
Q psy2924 111 KDGKGRG-RQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--------LN-----KEPPNID----------- 165 (225)
Q Consensus 111 ~~~~~~~-~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--------~~-----~~~~~ls----------- 165 (225)
...+-. .|..+-... .+........+.+...|+.+++. ++ .|-..||
T Consensus 512 -mt~GTLRdQvIYP~~~-------~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 512 -MTLGTLRDQVIYPLKA-------EDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred -ccccchhheeeccCcc-------ccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHH
Confidence 111111 111110000 01111111122233333333220 11 1122344
Q ss_pred ----------ccCCCCCCCHHHHHHHHHHhhhcCCe-EEEeecCChHHHHH
Q psy2924 166 ----------NQVPQSELDLDTVKTILSEYRIHNAD-ITLRYDATSDDLID 205 (225)
Q Consensus 166 ----------lDEp~~~LD~~~~~~i~~~l~~~~~~-vi~~~~~~~~~~~~ 205 (225)
+||-|+++|.+...++.+.+++.+.+ |.+.|...+....+
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHD 634 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhh
Confidence 99999999999999999999998877 67777665554443
No 460
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.97 E-value=4.3e-08 Score=78.53 Aligned_cols=150 Identities=17% Similarity=0.118 Sum_probs=88.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC-------CccccccccceeeccceEEEEc--------------CceEEEEeCCCCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV-------YSEVAAYEFTTLTTVPGCIKYK--------------GAKIQLLDLPGIIEG 109 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~-------~~~v~~~~~tt~~~~~G~i~~~--------------g~~i~~~d~~g~~~~ 109 (225)
.++|+|++|+|||||++.+++. ..+....+++|.+.....+.+. +..+.++|+||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 5899999999999999999973 1234556678877766666665 66889999999642
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCCccccH-HHHHHHHHhcccccCCCCCcccccCCCCCCCHHHH----HHHHHH
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHK-KLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTV----KTILSE 184 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~----~~i~~~ 184 (225)
+..........+|.+++++|........ .....+.... ..+.+.+-+.++..+.... +.+.+.
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 2344444556788999999986532211 1111122222 2344444455544433222 222222
Q ss_pred hhh-------cCCeEEEe---ecCChHHHHHHHhccccc
Q psy2924 185 YRI-------HNADITLR---YDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 185 l~~-------~~~~vi~~---~~~~~~~~~~~~~~~~~~ 213 (225)
+.. ....++.+ ++.+++++.+.+.+.+..
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 211 12233333 356899999888876654
No 461
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.96 E-value=2.4e-09 Score=89.49 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcCC---e-EEEeecCChHHHHHHHhccc
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHNA---D-ITLRYDATSDDLIDVVEGNR 211 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~---~-vi~~~~~~~~~~~~~~~~~~ 211 (225)
.++.+.+|||+++||+.....+.+.+.++.. . ++++|+ .++....|..+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~---~~~~~~~d~i~ 229 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK---EEFFSKADALV 229 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC---HHHHhhCCeEE
Confidence 4567889999999999999988888887643 3 445554 34445555443
No 462
>KOG0064|consensus
Probab=98.95 E-value=1.6e-09 Score=97.29 Aligned_cols=44 Identities=27% Similarity=0.413 Sum_probs=38.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+..++.....++|+|++ |--+-|+||||||||+|+++|.|+.+.
T Consensus 491 tP~~~vvv~~Ltf~i~~--G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 491 TPAGDVLVPKLTFQIEP--GMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred ccCcceeecceeEEecC--CceEEEECCCCccHHHHHHHHhccCcc
Confidence 44556667778999999 999999999999999999999999875
No 463
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.95 E-value=2.2e-09 Score=83.50 Aligned_cols=55 Identities=35% Similarity=0.564 Sum_probs=44.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
+..++++|+||+|||||+|+|.|... .++++|+||++.. .+.. +..+.++|+||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL-MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc-CCCEEEEECcCC
Confidence 45688999999999999999999776 7899999998642 3333 455788999985
No 464
>KOG0062|consensus
Probab=98.95 E-value=1.1e-09 Score=97.97 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=84.1
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce-EEEEeCCCCCCCccCCcc
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-IQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~ 115 (225)
+.+++++++. ..+++++|+||+||||+++++.+...| ..|.+.+.++. +... ..+.
T Consensus 380 ~~~~~~d~e~--~sRi~~vg~ng~gkst~lKi~~~~l~~-----------~rgi~~~~~r~ri~~f-----~Qhh----- 436 (582)
T KOG0062|consen 380 RKQLGLDRES--DSRISRVGENGDGKSTLLKILKGDLTP-----------TRGIVGRHPRLRIKYF-----AQHH----- 436 (582)
T ss_pred hhccCCccch--hhhhheeccCchhHHHHHHHHhccCCc-----------ccceeeecccceecch-----hHhh-----
Confidence 3456777777 779999999999999999999998887 77877655431 2110 0000
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cC---------------------CCCCcccccCCCC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LN---------------------KEPPNIDNQVPQS 171 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~---------------------~~~~~lslDEp~~ 171 (225)
+.+........| ......+-...+.++..+..+|+. .. ..|+.|.|||||+
T Consensus 437 -vd~l~~~v~~vd----~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 437 -VDFLDKNVNAVD----FMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred -hhHHHHHhHHHH----HHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 000000000000 001112222455677778888773 11 2334444999999
Q ss_pred CCCHHHHHHHHHHhhhcCCe-EEEeecC
Q psy2924 172 ELDLDTVKTILSEYRIHNAD-ITLRYDA 198 (225)
Q Consensus 172 ~LD~~~~~~i~~~l~~~~~~-vi~~~~~ 198 (225)
.||.++...+-+.++.+... |+++|+.
T Consensus 512 hLD~dsl~AL~~Al~~F~GGVv~VSHd~ 539 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNFNGGVVLVSHDE 539 (582)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEEECcH
Confidence 99999999999999998655 6677764
No 465
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.93 E-value=1.6e-08 Score=80.12 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc---h---HHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG---R---GRQV 120 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~---~---~~~~ 120 (225)
...++|+|++|+|||||+|.|.+.. ..+++.+++|.++....+ + ..+.++|+||+......... + ....
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 5679999999999999999999974 346778888877654332 3 46889999997532211100 0 1111
Q ss_pred HHHHhCCCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHH
Q psy2924 121 IAVARTCSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTV 178 (225)
Q Consensus 121 ~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~ 178 (225)
......++.+++++|....... ...+...+... ..+.+.+-...+.++....
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~------~~pviiv~nK~D~~~~~~~ 147 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER------GIPVLIVLTKADKLKKSEL 147 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHH
Confidence 1112245678888887654221 12222333332 3455555555555554433
No 466
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.93 E-value=6.9e-08 Score=73.41 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=54.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
+++++|++|||||||++.+.+...+....+.++.+.....+.+++ ..+.++|+||... +.......+.+++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHhcCCC
Confidence 589999999999999999998876433233223332333344433 5567789988632 1123345667899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 75 ~ii~v~d~~~~ 85 (159)
T cd00154 75 GAILVYDITNR 85 (159)
T ss_pred EEEEEEECCCH
Confidence 99999988753
No 467
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.93 E-value=7.2e-08 Score=75.38 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=54.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
+++|+|++|||||||++.+++...+....+..+.+.....+.+++. .+.++|++|... +.......++.++
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d 78 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYYRGAA 78 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccCC
Confidence 6899999999999999999987643222222233333344556653 567889988432 1122345667899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 79 ~il~v~d~~~~ 89 (168)
T cd01866 79 GALLVYDITRR 89 (168)
T ss_pred EEEEEEECCCH
Confidence 99999998754
No 468
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.93 E-value=5.3e-09 Score=88.48 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=38.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
..++|+||||||||||+++|+|...+ ..|.+.++|+++..+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~-----------~~G~i~~~g~~v~~~d 153 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST-----------GISQLGLRGKKVGIVD 153 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC-----------CCceEEECCEEeecch
Confidence 46899999999999999999999998 8999999999987654
No 469
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.92 E-value=7.4e-08 Score=74.96 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=55.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||++.+++...+....+..+.+.....+.+++.. +.+.|++|... +.......+..+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER-------FRSITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhcCC
Confidence 469999999999999999998644322222222334444567777755 56679887532 112224566789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 81 d~~i~v~d~~~~ 92 (169)
T cd04114 81 NALILTYDITCE 92 (169)
T ss_pred CEEEEEEECcCH
Confidence 999999987654
No 470
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.92 E-value=5.5e-08 Score=74.57 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=59.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
+++|+|++|||||||++.+++.. ....++.++.+.....+.+++ ..+.++|+||... +.......+..++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-------FSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHHhcCC
Confidence 47999999999999999999876 456777777766666677765 3567789988543 1122345567889
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
+++.+++...+
T Consensus 73 ~~i~v~d~~~~ 83 (160)
T cd00876 73 GFILVYSITDR 83 (160)
T ss_pred EEEEEEECCCH
Confidence 88888887654
No 471
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.92 E-value=2.5e-09 Score=84.72 Aligned_cols=55 Identities=38% Similarity=0.611 Sum_probs=45.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
...++++|.||+|||||+|+|+|... +++++|++|++... +.+ +..+.++|+||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~-~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHL-DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEe-CCCEEEEECcCC
Confidence 35799999999999999999999776 89999999987543 333 346889999985
No 472
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.92 E-value=7.4e-08 Score=74.74 Aligned_cols=82 Identities=24% Similarity=0.244 Sum_probs=57.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.++++|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||... +.......+..++
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 77 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYYRGAV 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHCCCC
Confidence 6899999999999999999987654344455555545556677775 467889988532 1112234557788
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
.+++++|...+
T Consensus 78 ~~i~v~d~~~~ 88 (165)
T cd01868 78 GALLVYDITKK 88 (165)
T ss_pred EEEEEEECcCH
Confidence 88888888653
No 473
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.91 E-value=7.3e-08 Score=74.02 Aligned_cols=81 Identities=23% Similarity=0.198 Sum_probs=54.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
+++++|++|||||||++.+++-.. ...|+.|+.+.....+.+++.. +.++|++|.... ..-....+.+++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-------HHHHHHHHhcCC
Confidence 689999999999999999997542 3456666544444455666654 567899885321 111234556788
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
.++.+++....
T Consensus 75 ~~i~v~~~~~~ 85 (162)
T cd04138 75 GFLCVFAINSR 85 (162)
T ss_pred EEEEEEECCCH
Confidence 88888887653
No 474
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.91 E-value=3.1e-08 Score=76.25 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=78.8
Q ss_pred EEEEcCCCCCHHHHHHHHh--CCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC---c---chHHHHHHH
Q psy2924 52 IGFVGFPSVGKSTLLSTLA--GVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG---K---GRGRQVIAV 123 (225)
Q Consensus 52 v~IiG~nGaGKSTLln~l~--g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~---~---~~~~~~~~~ 123 (225)
|+++|++|||||||+|.|+ +...+.+..+++|..... +.++ ..+.++|+||+....... . ....+....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999 555566667666655422 2223 377889999865321100 0 011111122
Q ss_pred HhCCCeEEEEeeCCCcc-ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHH----hh--hcCCeEEEee
Q psy2924 124 ARTCSLIFIVLDVLKPL-GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSE----YR--IHNADITLRY 196 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~----l~--~~~~~vi~~~ 196 (225)
..+.++++.+++..... .....+...+...+ .+.+.+.++.+.+++......... +. .....++.++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELG------IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC------CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 23445666777765432 22233444554432 344545566665554433322222 22 1122344434
Q ss_pred ---cCChHHHHHHHh
Q psy2924 197 ---DATSDDLIDVVE 208 (225)
Q Consensus 197 ---~~~~~~~~~~~~ 208 (225)
..+++++++.+.
T Consensus 153 a~~~~~~~~l~~~l~ 167 (170)
T cd01876 153 SLKGQGIDELRALIE 167 (170)
T ss_pred cCCCCCHHHHHHHHH
Confidence 356777766554
No 475
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.90 E-value=4e-09 Score=94.01 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=106.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE-EEEeCCCCCCCccCC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI-QLLDLPGIIEGAKDG 113 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i-~~~d~~g~~~~~~~~ 113 (225)
...+++||+|.. ||++||.|-.|-|-+-|+.+|+|+..+ .+|.|.++|.++ .-.+. ......+
T Consensus 272 ~~v~~vs~~Vr~--GEIvGIAGV~GNGQ~eL~eaisGlr~~-----------~~G~I~l~G~~v~~~~~~---~~~r~~G 335 (501)
T COG3845 272 TAVKDVSFEVRA--GEIVGIAGVAGNGQSELVEAISGLRKP-----------ASGRILLNGKDVLGRLSP---RERRRLG 335 (501)
T ss_pred ceeeeeeeEEec--CcEEEEEecCCCCHHHHHHHHhCCCcc-----------CCceEEECCEeccccCCH---HHHHhcC
Confidence 457789999999 999999999999999999999999977 679999999987 11111 1111223
Q ss_pred cchHHHHH---HHHhCCCe----EEEEee-------C-CCccccHHHHHHHHHhcccc---cC-----------------
Q psy2924 114 KGRGRQVI---AVARTCSL----IFIVLD-------V-LKPLGHKKLIEHELEGFGLR---LN----------------- 158 (225)
Q Consensus 114 ~~~~~~~~---~~~~~~~~----~l~~~d-------~-~~~~~~~~~~~~~l~~~~l~---~~----------------- 158 (225)
+++++... .+....++ ++...+ . .......+.+.++++.+.+. ..
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Ila 415 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILA 415 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhh
Confidence 33332221 00011111 010111 1 11123345667778888773 12
Q ss_pred ----CCCCcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 159 ----KEPPNIDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 159 ----~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+.|..|.+..||.|||....+.+.+.+.+.. ..|++.|. .+|++..+.|.-.++..+.+
T Consensus 416 REl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~-dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 416 RELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISE-DLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEeh-hHHHHHHhhheeeeeeCCce
Confidence 2223333899999999999999998887653 34665454 48999998887777755544
No 476
>PRK04213 GTP-binding protein; Provisional
Probab=98.89 E-value=8.2e-08 Score=77.25 Aligned_cols=55 Identities=35% Similarity=0.394 Sum_probs=44.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
...++|+|++|||||||+|.++|....++..|++|+++.. +.+. ++.++|+||+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccc
Confidence 4579999999999999999999987777888999887542 3333 68889999963
No 477
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.89 E-value=5.1e-09 Score=83.89 Aligned_cols=55 Identities=31% Similarity=0.318 Sum_probs=44.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC---------ccccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY---------SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~---------~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
+..++++|.+|+|||||+|+|.+.. ..++..|+||+++....+ + ..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--G-NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--C-CCCEEEeCcCC
Confidence 4579999999999999999999853 257889999999865444 3 25788999985
No 478
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.88 E-value=1.2e-08 Score=79.28 Aligned_cols=55 Identities=35% Similarity=0.549 Sum_probs=46.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
+..++++|.+|+|||||+|+|++... .+++.|+||++..... + +..+.++|+||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--L-DNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--e-cCCEEEEECCCC
Confidence 66899999999999999999999875 6889999999876533 3 356889999985
No 479
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.88 E-value=1.1e-08 Score=83.30 Aligned_cols=39 Identities=18% Similarity=-0.078 Sum_probs=34.4
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+....++++|++.. |+.++|+||||+||||+++++++..
T Consensus 15 ~~~v~~~~~~~~~~--~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 15 KNFIPNDIYLTRGS--SRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEeeeEEeeCC--CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999988 8999999999999999999998765
No 480
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.88 E-value=1.5e-07 Score=73.32 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=51.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccc-eeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFT-TLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~t-t~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
+++|+|++|||||||++.+.+..... .+..| ..+.....+.+.+.. +.++|+||... +.......++++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 73 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER-------FQSLGVAFYRGA 73 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHhHHHHHhcCC
Confidence 58999999999999999998865321 11111 122223345566654 45789987532 112234567889
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
++++.++|...+
T Consensus 74 d~~i~v~d~~~~ 85 (172)
T cd01862 74 DCCVLVYDVTNP 85 (172)
T ss_pred CEEEEEEECCCH
Confidence 999999988654
No 481
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.87 E-value=1.6e-07 Score=73.98 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=58.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccc----------------cccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAA----------------YEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~----------------~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
.++|+|.+|||||||+|.|++...+... ..++|.+.....+.+.+..+.++|+||...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 3799999999999999999987654221 223444444455666678899999999643
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..++++++++|....
T Consensus 75 -~~~~~~~~~~~~d~~i~v~d~~~~ 98 (189)
T cd00881 75 -FSSEVIRGLSVSDGAILVVDANEG 98 (189)
T ss_pred -HHHHHHHHHHhcCEEEEEEECCCC
Confidence 123344556789999999998654
No 482
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.87 E-value=1e-07 Score=74.67 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=56.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
+++++|++|||||||++.+.+... .. +.+|.......+.+++..+.++|+||..... ......+..++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 478999999999999999998632 22 2334444445566777888999999864321 2234456889999
Q ss_pred EEEeeCCCc
Q psy2924 131 FIVLDVLKP 139 (225)
Q Consensus 131 l~~~d~~~~ 139 (225)
++++|...+
T Consensus 71 i~V~D~s~~ 79 (169)
T cd04158 71 VFVVDSSHR 79 (169)
T ss_pred EEEEeCCcH
Confidence 999998754
No 483
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.87 E-value=4.4e-09 Score=84.88 Aligned_cols=165 Identities=12% Similarity=0.052 Sum_probs=93.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
-++.+++|+++.. |++-|+||.+|+|||-..++|.|.... +|-- +.-.+.|++.++....+..-++.....
T Consensus 20 vK~VD~v~ltlnE--GEi~GLVGESGSGKSLiAK~Ic~v~kd--nW~v-----TADR~Rf~~idLL~L~Pr~RRk~ig~~ 90 (330)
T COG4170 20 VKAVDRVSMTLNE--GEIRGLVGESGSGKSLIAKAICGVNKD--NWRV-----TADRMRFDDIDLLRLSPRERRKLVGHN 90 (330)
T ss_pred eEeeeeeeeeecc--ceeeeeeccCCCchhHHHHHHhccccc--ceEE-----EhhhcccccchhhcCChHHhhhhhccc
Confidence 4578899999999 999999999999999999999998753 1100 223355555443322211111111112
Q ss_pred cchHHHHHH------------HHhCCCeEEEEeeCCCc---cccHHHHHHHHHhccccc-----C---------------
Q psy2924 114 KGRGRQVIA------------VARTCSLIFIVLDVLKP---LGHKKLIEHELEGFGLRL-----N--------------- 158 (225)
Q Consensus 114 ~~~~~~~~~------------~~~~~~~~l~~~d~~~~---~~~~~~~~~~l~~~~l~~-----~--------------- 158 (225)
+.|.+|.+. ++++.. ...+.++.. -=.++++.++|.++|+.. .
T Consensus 91 isMIFQeP~sCLDPS~~iG~QlIq~IP--~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVM 168 (330)
T COG4170 91 VSMIFQEPQSCLDPSERVGRQLIQNIP--AWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVM 168 (330)
T ss_pred hhhhhcCchhhcChHHHHHHHHHhhCc--cccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeee
Confidence 223333211 111111 001111110 002345777888888731 1
Q ss_pred ------CCCCcccccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhc
Q psy2924 159 ------KEPPNIDNQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEG 209 (225)
Q Consensus 159 ------~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~ 209 (225)
..+..|..||||+++++..+..++.++..++. +.+...++.+.-+.+.++.
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~ 228 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK 228 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhh
Confidence 12233448999999999999999999887653 3333344445555555554
No 484
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.87 E-value=1.4e-07 Score=72.80 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=58.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-+++++|++|||||||++.+.+.. .+..++.|+.+.....+.+++. .+.++|+||..... .-....+..+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------AMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------HHHHHHHhhC
Confidence 368999999999999999998754 3566777766544555667775 46679999864321 1123455788
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+.++++++....
T Consensus 75 ~~~ilv~d~~~~ 86 (164)
T cd04145 75 EGFLLVFSVTDR 86 (164)
T ss_pred CEEEEEEECCCH
Confidence 999999888654
No 485
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.86 E-value=6.8e-09 Score=91.94 Aligned_cols=140 Identities=22% Similarity=0.298 Sum_probs=76.6
Q ss_pred CCCCceeecc---CCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceE-----EEEcCceEEEEeCCCCCCC
Q psy2924 38 PGEGFDVAKT---GDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGC-----IKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 38 ~~is~~i~~~---~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~-----i~~~g~~i~~~d~~g~~~~ 109 (225)
.+..+++... .|++++++||||-|||||++.|+|...| ++|. +.+..|.|.. |.+
T Consensus 353 g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-----------deg~~~~~~vSyKPQyI~~-~~~----- 415 (591)
T COG1245 353 GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-----------DEGSEEDLKVSYKPQYISP-DYD----- 415 (591)
T ss_pred CceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-----------CCCCCccceEeecceeecC-CCC-----
Confidence 3556666542 4899999999999999999999999998 7664 3333333321 111
Q ss_pred ccCCcchHHHHHHHHhCCCeEE--EEeeCCCcccc--------HHHHHHHHHhccc--ccCCCCCcccccCCCCCCCHHH
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIF--IVLDVLKPLGH--------KKLIEHELEGFGL--RLNKEPPNIDNQVPQSELDLDT 177 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l--~~~d~~~~~~~--------~~~~~~~l~~~~l--~~~~~~~~lslDEp~~~LD~~~ 177 (225)
+-+.+++.........- +-.+...+... .+..-..|+++-+ .+.+....+.+|||.+.||.+.
T Consensus 416 -----gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 416 -----GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred -----CcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 22333332221110000 00000011000 0011122333333 2556777888999999999987
Q ss_pred HHHHHHHhhhc----CCe-EEEeecCC
Q psy2924 178 VKTILSEYRIH----NAD-ITLRYDAT 199 (225)
Q Consensus 178 ~~~i~~~l~~~----~~~-vi~~~~~~ 199 (225)
+-.+-+.++.. .++ +++-|+..
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEeccee
Confidence 76666666553 222 66667653
No 486
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.86 E-value=1.4e-07 Score=73.40 Aligned_cols=82 Identities=24% Similarity=0.202 Sum_probs=54.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.++++|++|||||||++.+.+-.......|..+.+.....+.+++. .+.++|+||.... .......+.+++
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 76 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYYRGAH 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHhCcCC
Confidence 6899999999999999999976543222222232323344556664 4677899984321 122245667899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 77 ~ii~v~d~~~~ 87 (166)
T cd01869 77 GIIIVYDVTDQ 87 (166)
T ss_pred EEEEEEECcCH
Confidence 99999998754
No 487
>KOG2355|consensus
Probab=98.85 E-value=1.1e-08 Score=82.24 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
.+-++|++++. |.+..+||.|||||||||++|+|..-
T Consensus 29 ~~~Dfnldlp~--gsRcLlVGaNGaGKtTlLKiLsGKhm 65 (291)
T KOG2355|consen 29 IFFDFNLDLPA--GSRCLLVGANGAGKTTLLKILSGKHM 65 (291)
T ss_pred eEEEEeeccCC--CceEEEEecCCCchhhhHHHhcCccc
Confidence 44577888888 99999999999999999999999764
No 488
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.83 E-value=1.4e-07 Score=74.31 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=56.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
-.++++|++|+|||||++.+++-... . + .+|.....+.+.+++..+.++|+||... +.......++.+++
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H-T-SPTIGSNVEEIVYKNIRFLMWDIGGQES-------LRSSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C-c-CCccccceEEEEECCeEEEEEECCCCHH-------HHHHHHHHhhcCCE
Confidence 46999999999999999999764332 1 1 2233334456777788889999998642 11223455688999
Q ss_pred EEEEeeCCCc
Q psy2924 130 IFIVLDVLKP 139 (225)
Q Consensus 130 ~l~~~d~~~~ 139 (225)
+++++|....
T Consensus 86 vi~V~D~s~~ 95 (174)
T cd04153 86 VILVIDSTDR 95 (174)
T ss_pred EEEEEECCCH
Confidence 9999998754
No 489
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=1.9e-09 Score=96.74 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=42.6
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccce-EEEEcCceEE
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG-CIKYKGAKIQ 99 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G-~i~~~g~~i~ 99 (225)
+.+++|+++.+ |++++|+||+||||||||+ .|+..| .+| .|.++|.++.
T Consensus 21 vL~~Vsl~i~~--GEiv~L~G~SGsGKSTLLr--~~l~~~-----------~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 21 ILVKFNKELPS--SSLLFLCGSSGDGKSEILA--ENKRKF-----------SEGYEFFLDATHSF 70 (504)
T ss_pred HHhCCceeecC--CCEEEEECCCCCCHHHHHh--cCCCCC-----------CCCCEEEECCEECC
Confidence 45789999999 9999999999999999999 677666 666 7999998764
No 490
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.83 E-value=2e-08 Score=81.27 Aligned_cols=48 Identities=10% Similarity=-0.082 Sum_probs=34.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHhhhcC-----CeEEEeecCChHHHHHH
Q psy2924 159 KEPPNIDNQVPQSELDLDTVKTILSEYRIHN-----ADITLRYDATSDDLIDV 206 (225)
Q Consensus 159 ~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~-----~~vi~~~~~~~~~~~~~ 206 (225)
..++.+.+|||++++|+.....+.+.+.+.. ...++.+.|.++.+...
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence 4677888999999999999988888776641 23344455656665544
No 491
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.82 E-value=1.8e-07 Score=73.01 Aligned_cols=82 Identities=23% Similarity=0.228 Sum_probs=53.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccce-eeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT-LTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt-~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-+++++|++|||||||++.+.+.... ..|..|+ .+.....+.+++. .+.++|++|.... .......+.+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~~~ 75 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF-------RTITTAYYRG 75 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHhCC
Confidence 36999999999999999999976532 2222221 1212234556664 4677899884321 1122356678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 76 ad~~i~v~d~~~~ 88 (167)
T cd01867 76 AMGIILVYDITDE 88 (167)
T ss_pred CCEEEEEEECcCH
Confidence 9999999987653
No 492
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.82 E-value=1.3e-07 Score=72.86 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=53.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.++++|++|||||||++.+++.......+..|. ......+...+..+.++|+||..... ......+.+++.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~-g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTV-GFNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCcc-ccceEEEEECCEEEEEEECCCCHhhH-------HHHHHHHccCCEE
Confidence 378999999999999999998643223333221 11222344556778899999864311 1223456789999
Q ss_pred EEEeeCCCc
Q psy2924 131 FIVLDVLKP 139 (225)
Q Consensus 131 l~~~d~~~~ 139 (225)
++++|....
T Consensus 73 i~v~D~~~~ 81 (162)
T cd04157 73 IFVIDSSDR 81 (162)
T ss_pred EEEEeCCcH
Confidence 999998754
No 493
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.82 E-value=2.1e-07 Score=82.32 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=97.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc----------------ccccccc---ceeeccc---eEEEEcC-----ceEEEE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS----------------EVAAYEF---TTLTTVP---GCIKYKG-----AKIQLL 101 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~----------------~v~~~~~---tt~~~~~---G~i~~~g-----~~i~~~ 101 (225)
...+|++||-++|||||+|.++++.. .+++.+| ||.+|.. -.+.+.. -++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 45689999999999999999999822 2467888 8888875 3343322 367889
Q ss_pred eCCCCCCCccCCcchHHH----------------------HHHHHh-CCCeEEEEe-eCC-------CccccHHHHHHHH
Q psy2924 102 DLPGIIEGAKDGKGRGRQ----------------------VIAVAR-TCSLIFIVL-DVL-------KPLGHKKLIEHEL 150 (225)
Q Consensus 102 d~~g~~~~~~~~~~~~~~----------------------~~~~~~-~~~~~l~~~-d~~-------~~~~~~~~~~~~l 150 (225)
|++|+......+-..... ...+++ ++|+.+.+. |+. ......+++.+.|
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999877533222111111 234555 788877776 763 2223344555666
Q ss_pred HhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhh-hcCCeEEEee--cCChHHHHHHHhccccccceEEe
Q psy2924 151 EGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYR-IHNADITLRY--DATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 151 ~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~-~~~~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+..+ .|.+.+-+.++-..+. ...+.+.+. .+...++..+ ...-+++..++...+.-||...+
T Consensus 177 k~~~------kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFPv~Ei 241 (492)
T TIGR02836 177 KELN------KPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFPILEI 241 (492)
T ss_pred HhcC------CCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCCceEE
Confidence 6653 4555544444433332 333333332 2344444434 35677777777777777885543
No 494
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.81 E-value=6e-08 Score=83.10 Aligned_cols=61 Identities=28% Similarity=0.430 Sum_probs=50.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.-.|+|+|.+|+||||++|.|+|... .++.++.+|..+......++|..+.++||||+...
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 34799999999999999999999876 56777777766666666678999999999998764
No 495
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.81 E-value=1.7e-07 Score=72.12 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=55.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
+++++|++|||||||++.+++... ..+.. |.......+.+.+..+.++|+||.... .......+..++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VTTIP-TIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CCCCC-CcCcceEEEEECCEEEEEEECCCChhh-------HHHHHHHhccCCEE
Confidence 479999999999999999998762 12222 222233446667788999999986432 12234466788999
Q ss_pred EEEeeCCCc
Q psy2924 131 FIVLDVLKP 139 (225)
Q Consensus 131 l~~~d~~~~ 139 (225)
++++|...+
T Consensus 71 i~v~D~~~~ 79 (158)
T cd00878 71 IFVVDSSDR 79 (158)
T ss_pred EEEEECCCH
Confidence 999998764
No 496
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.81 E-value=1.3e-07 Score=77.09 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCCcccccCCC-----CCCCHHHHHHHHHHhhhcC
Q psy2924 160 EPPNIDNQVPQ-----SELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 160 ~~~~lslDEp~-----~~LD~~~~~~i~~~l~~~~ 189 (225)
.+..+.+|||| ++||+...+.+.+.+..+.
T Consensus 170 ~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 170 DPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred cccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 34455599999 9999999999999998763
No 497
>PRK09866 hypothetical protein; Provisional
Probab=98.80 E-value=4.7e-07 Score=83.93 Aligned_cols=56 Identities=23% Similarity=0.182 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccce
Q psy2924 14 LGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTT 83 (225)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt 83 (225)
+..++.|+..|++++......+ ..++|+|++|+|||||+|+|+|... |+++-++|+
T Consensus 48 rR~i~~ri~~L~~~L~Kv~~~~--------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~ 104 (741)
T PRK09866 48 QPNIAERHAMLNNELRKISRLE--------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTA 104 (741)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--------------eEEEEECCCCCCHHHHHHHHhCCccccCCCccccc
Confidence 4567888888888888776644 4799999999999999999999876 554555553
No 498
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.80 E-value=1.6e-09 Score=94.91 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=92.9
Q ss_pred HHHHHHHHhhh---ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC
Q psy2924 19 ARIAKLRRELI---TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG 95 (225)
Q Consensus 19 ~~~~~~~~~~~---~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g 95 (225)
.++..+-+.+. ....+...+|+||.+.+ |+.++|+|++|+||||||++|+|.... ++.--..|++|.+.+--
T Consensus 378 ~e~~~IleSFGv~~r~ieryvlr~vNL~ikp--GdvvaVvGqSGaGKttllRmi~G~~~~---~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 378 NEFQDILESFGVRQRVIERYVLRNLNLEIKP--GDVVAVVGQSGAGKTTLLRMILGAQKG---RGEEKYRPDSGKVEVPK 452 (593)
T ss_pred hHHHHHHHHhcchheeeeeeeeeceeeEecC--CCeEEEEecCCCCcchHHHHHHHHhhc---ccccccCCCCCceeccc
Confidence 44444444444 22235578899999999 999999999999999999999997542 11122344888887653
Q ss_pred ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe---EE---EEeeCCC---c-----cccHHH--HHHHHHhcccccCC
Q psy2924 96 AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL---IF---IVLDVLK---P-----LGHKKL--IEHELEGFGLRLNK 159 (225)
Q Consensus 96 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~l---~~~d~~~---~-----~~~~~~--~~~~l~~~~l~~~~ 159 (225)
..+. .-.|+.....-.+.....++.....+.++ ++ .+.|+.. + ..++++ +..++ ..
T Consensus 453 nt~~-a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll-------ae 524 (593)
T COG2401 453 NTVS-ALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL-------AE 524 (593)
T ss_pred cchh-hccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH-------hc
Confidence 3322 22344443322222223332222221111 00 0111100 0 111111 22222 23
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecC
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDA 198 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~ 198 (225)
.+..+..||-.+.||+.+...+...+..+. .+ ++++|..
T Consensus 525 rpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 525 RPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred CCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 566777999999999988877777776653 44 4555554
No 499
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.80 E-value=3.1e-07 Score=70.83 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=51.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
+++++|++|||||||++.+++........|-.+.+.....+.+++. .+.++|+||..... ......++.++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR-------TLTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHHHhCCCC
Confidence 5899999999999999999986543211121111112223445553 46778999853211 11234567899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 75 ~~i~v~d~~~~ 85 (161)
T cd01863 75 GVILVYDVTRR 85 (161)
T ss_pred EEEEEEECCCH
Confidence 99999997654
No 500
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.80 E-value=3.6e-07 Score=74.09 Aligned_cols=153 Identities=20% Similarity=0.141 Sum_probs=81.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc--cc-cccceeeccceEEEEc---------------------------C-----
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEV--AA-YEFTTLTTVPGCIKYK---------------------------G----- 95 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v--~~-~~~tt~~~~~G~i~~~---------------------------g----- 95 (225)
.+||+|++|+|||||+.+|++..... .+ .-+-|.....-.+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 58999999999999999999874210 00 0000110000001111 2
Q ss_pred -ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc--cccHHHHHHHHHhcccccCCCCCcccccCCCCC
Q psy2924 96 -AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP--LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSE 172 (225)
Q Consensus 96 -~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~ 172 (225)
..+.++|+||.. .+.......+.++|++++++|...+ ..+.......+...+ .++.+.+-++.+-
T Consensus 82 ~~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiivvNK~Dl 149 (203)
T cd01888 82 VRHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIVQNKIDL 149 (203)
T ss_pred ccEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEEEEchhc
Confidence 568899999842 2344455666788999999998753 112122222233322 1334444555554
Q ss_pred CCHHHHH----HHHHHhhhc---CCeEEEee---cCChHHHHHHHhccccccc
Q psy2924 173 LDLDTVK----TILSEYRIH---NADITLRY---DATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 173 LD~~~~~----~i~~~l~~~---~~~vi~~~---~~~~~~~~~~~~~~~~~~~ 215 (225)
.+..... .+.+.+... ...++.+| +.+++++.+.+...+..+|
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 4433332 233333221 22344334 5689999988877665543
Done!