Query psy2924
Match_columns 225
No_of_seqs 158 out of 1268
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 2.2E-34 7.4E-39 252.0 19.9 225 1-225 22-261 (376)
2 3fvq_A Fe(3+) IONS import ATP- 99.9 9.9E-25 3.4E-29 189.7 2.5 176 28-219 11-218 (359)
3 3rlf_A Maltose/maltodextrin im 99.9 1.7E-24 5.8E-29 189.5 0.8 172 29-219 11-213 (381)
4 1z47_A CYSA, putative ABC-tran 99.9 6.9E-24 2.4E-28 184.3 3.2 172 29-219 22-225 (355)
5 1v43_A Sugar-binding transport 99.9 9.8E-24 3.4E-28 184.4 3.1 171 29-219 19-221 (372)
6 2olj_A Amino acid ABC transpor 99.9 1.5E-24 5.3E-29 181.6 -2.3 181 24-219 27-238 (263)
7 3tui_C Methionine import ATP-b 99.9 1.4E-24 4.8E-29 188.9 -2.8 170 36-220 43-244 (366)
8 3tif_A Uncharacterized ABC tra 99.9 7.5E-25 2.6E-29 180.7 -5.2 169 36-219 20-224 (235)
9 1g29_1 MALK, maltose transport 99.9 6.7E-24 2.3E-28 185.6 0.5 173 29-219 11-219 (372)
10 2pcj_A ABC transporter, lipopr 99.9 5.1E-25 1.7E-29 180.4 -6.5 175 30-219 13-218 (224)
11 2yyz_A Sugar ABC transporter, 99.9 6.8E-24 2.3E-28 184.7 -0.2 171 29-219 11-213 (359)
12 1g6h_A High-affinity branched- 99.9 2.6E-24 8.9E-29 179.7 -2.9 172 30-218 16-231 (257)
13 2it1_A 362AA long hypothetical 99.9 9E-24 3.1E-28 184.1 0.1 171 29-219 11-213 (362)
14 1ji0_A ABC transporter; ATP bi 99.9 9.4E-24 3.2E-28 174.6 -0.1 174 30-219 15-218 (240)
15 1oxx_K GLCV, glucose, ABC tran 99.9 5.5E-24 1.9E-28 185.0 -1.8 172 30-219 12-220 (353)
16 1b0u_A Histidine permease; ABC 99.9 2.5E-24 8.6E-29 180.2 -4.2 178 29-219 14-232 (262)
17 3gfo_A Cobalt import ATP-bindi 99.9 1.1E-21 3.6E-26 165.3 9.9 173 29-218 15-222 (275)
18 3d31_A Sulfate/molybdate ABC t 99.9 9.8E-24 3.3E-28 183.0 -2.9 168 30-218 10-206 (348)
19 1vpl_A ABC transporter, ATP-bi 99.9 1.1E-23 3.7E-28 175.8 -2.8 173 28-218 22-224 (256)
20 2ihy_A ABC transporter, ATP-bi 99.9 1.4E-23 4.9E-28 177.1 -2.2 169 28-215 28-238 (279)
21 4g1u_C Hemin import ATP-bindin 99.9 8.7E-24 3E-28 177.3 -3.7 174 29-219 19-227 (266)
22 2onk_A Molybdate/tungstate ABC 99.8 4.8E-22 1.6E-26 164.3 2.2 163 36-219 14-206 (240)
23 2yz2_A Putative ABC transporte 99.8 1.4E-22 4.8E-27 170.0 -1.5 160 35-216 21-214 (266)
24 2qi9_C Vitamin B12 import ATP- 99.8 2E-22 6.8E-27 167.5 -1.2 167 35-219 14-212 (249)
25 1sgw_A Putative ABC transporte 99.8 2.4E-23 8.1E-28 169.4 -7.8 140 30-197 19-192 (214)
26 2d2e_A SUFC protein; ABC-ATPas 99.8 7.1E-23 2.4E-27 170.3 -5.5 170 30-217 12-221 (250)
27 2nq2_C Hypothetical ABC transp 99.8 8.4E-22 2.9E-26 164.1 0.6 165 30-216 13-205 (253)
28 1mv5_A LMRA, multidrug resista 99.8 4.9E-22 1.7E-26 164.5 -2.4 163 33-219 14-216 (243)
29 2zu0_C Probable ATP-dependent 99.8 1.6E-22 5.5E-27 169.7 -5.4 150 23-189 22-211 (267)
30 2ixe_A Antigen peptide transpo 99.8 7.7E-22 2.6E-26 165.9 -2.2 52 34-98 32-83 (271)
31 2ff7_A Alpha-hemolysin translo 99.8 5.3E-22 1.8E-26 164.7 -4.1 52 34-98 22-73 (247)
32 2pjz_A Hypothetical protein ST 99.8 2.6E-21 8.9E-26 162.0 -2.3 155 34-215 18-201 (263)
33 3b5x_A Lipid A export ATP-bind 99.8 1.4E-19 4.7E-24 166.9 5.8 165 34-219 356-557 (582)
34 3nh6_A ATP-binding cassette SU 99.8 3.4E-21 1.2E-25 164.4 -5.3 52 35-99 68-119 (306)
35 3gd7_A Fusion complex of cysti 99.8 1E-20 3.4E-25 166.4 -5.3 165 28-218 26-231 (390)
36 2ghi_A Transport protein; mult 99.7 3.6E-20 1.2E-24 154.8 -2.0 50 35-98 34-83 (260)
37 2pze_A Cystic fibrosis transme 99.7 2.1E-17 7.1E-22 135.5 14.2 50 34-96 21-70 (229)
38 2cbz_A Multidrug resistance-as 99.7 6.3E-18 2.2E-22 139.3 9.8 54 34-101 18-71 (237)
39 2bbs_A Cystic fibrosis transme 99.7 5.4E-19 1.9E-23 149.8 2.7 55 33-101 50-104 (290)
40 3b60_A Lipid A export ATP-bind 99.7 1.5E-19 5.2E-24 166.6 -3.7 163 35-218 357-556 (582)
41 2yl4_A ATP-binding cassette SU 99.7 3.7E-19 1.3E-23 164.5 -2.1 163 36-219 359-560 (595)
42 4a82_A Cystic fibrosis transme 99.7 4.2E-19 1.4E-23 163.6 -3.0 51 36-99 356-406 (578)
43 3qf4_B Uncharacterized ABC tra 99.7 5.4E-19 1.8E-23 163.5 -2.7 52 35-99 369-420 (598)
44 3ozx_A RNAse L inhibitor; ATP 99.7 1.2E-16 4.1E-21 145.9 12.0 147 40-213 287-459 (538)
45 3qf4_A ABC transporter, ATP-bi 99.7 1.4E-18 4.8E-23 160.4 -2.3 52 35-99 357-408 (587)
46 2qtf_A Protein HFLX, GTP-bindi 99.7 1.4E-15 4.6E-20 132.8 14.7 203 3-213 135-354 (364)
47 1yqt_A RNAse L inhibitor; ATP- 99.6 8.2E-16 2.8E-20 140.5 11.3 145 39-213 304-475 (538)
48 3bk7_A ABC transporter ATP-bin 99.6 1.1E-15 3.8E-20 141.3 11.7 145 39-213 374-545 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.6 2.8E-16 9.5E-21 143.6 6.8 166 30-213 30-231 (538)
50 1udx_A The GTP-binding protein 99.6 2.8E-15 9.6E-20 132.7 12.3 169 37-208 147-320 (416)
51 1tq4_A IIGP1, interferon-induc 99.6 1.6E-16 5.5E-21 140.5 3.2 143 36-188 38-212 (413)
52 3j16_B RLI1P; ribosome recycli 99.6 1.9E-15 6.4E-20 139.7 9.5 151 43-213 99-294 (608)
53 3bk7_A ABC transporter ATP-bin 99.6 7.5E-16 2.6E-20 142.4 6.8 43 30-75 100-143 (607)
54 4f4c_A Multidrug resistance pr 99.6 6.3E-18 2.1E-22 168.2 -7.7 144 36-197 1094-1275(1321)
55 1ni3_A YCHF GTPase, YCHF GTP-b 99.6 8.1E-16 2.8E-20 135.2 5.9 94 43-138 16-127 (392)
56 3ozx_A RNAse L inhibitor; ATP 99.6 2.1E-15 7.2E-20 137.7 8.6 134 49-213 25-210 (538)
57 2iw3_A Elongation factor 3A; a 99.6 1.9E-15 6.6E-20 145.2 8.3 49 35-96 687-735 (986)
58 3j16_B RLI1P; ribosome recycli 99.6 4.5E-15 1.6E-19 137.1 10.5 148 36-213 362-541 (608)
59 3g5u_A MCG1178, multidrug resi 99.6 1.3E-16 4.3E-21 158.5 -0.3 52 35-99 1047-1098(1284)
60 1wxq_A GTP-binding protein; st 99.6 4.3E-15 1.5E-19 131.0 9.0 171 51-225 2-226 (397)
61 3ux8_A Excinuclease ABC, A sub 99.5 3.6E-15 1.2E-19 139.5 6.6 32 33-66 30-61 (670)
62 3g5u_A MCG1178, multidrug resi 99.5 1.6E-16 5.6E-21 157.7 -4.0 51 36-99 405-455 (1284)
63 1jal_A YCHF protein; nucleotid 99.5 1E-14 3.5E-19 126.8 6.2 90 49-138 2-108 (363)
64 2ohf_A Protein OLA1, GTP-bindi 99.5 6.3E-14 2.1E-18 123.1 11.1 93 43-137 18-127 (396)
65 4f4c_A Multidrug resistance pr 99.5 1.2E-16 4.1E-21 159.0 -7.3 51 36-99 433-483 (1321)
66 2npi_A Protein CLP1; CLP1-PCF1 99.5 2.4E-15 8.3E-20 134.8 -1.2 44 39-95 130-175 (460)
67 2iw3_A Elongation factor 3A; a 99.5 2.6E-14 9E-19 137.4 4.5 153 33-218 447-623 (986)
68 1lnz_A SPO0B-associated GTP-bi 99.4 4E-13 1.4E-17 116.2 10.1 161 51-213 160-330 (342)
69 3iev_A GTP-binding protein ERA 99.4 1.4E-12 4.8E-17 111.1 12.9 158 50-213 11-182 (308)
70 4gp7_A Metallophosphoesterase; 99.4 9E-15 3.1E-19 114.3 -0.8 31 39-71 1-31 (171)
71 3iby_A Ferrous iron transport 99.4 1.8E-13 6E-18 113.8 7.0 89 51-139 3-96 (256)
72 3ux8_A Excinuclease ABC, A sub 99.4 1.4E-13 4.7E-18 128.8 6.7 34 35-70 336-369 (670)
73 2e87_A Hypothetical protein PH 99.4 1.8E-11 6E-16 106.3 19.4 193 4-209 119-332 (357)
74 1ega_A Protein (GTP-binding pr 99.4 3.5E-13 1.2E-17 114.5 8.1 155 49-210 8-172 (301)
75 1mky_A Probable GTP-binding pr 99.4 2E-12 7E-17 115.2 13.2 150 51-208 3-161 (439)
76 1mky_A Probable GTP-binding pr 99.4 1.8E-12 6.2E-17 115.5 12.2 105 49-153 180-291 (439)
77 1wf3_A GTP-binding protein; GT 99.4 9.4E-12 3.2E-16 105.7 15.6 155 51-210 9-170 (301)
78 1pui_A ENGB, probable GTP-bind 99.4 4.2E-13 1.4E-17 107.0 6.6 61 42-107 21-83 (210)
79 1znw_A Guanylate kinase, GMP k 99.4 1.8E-13 6.3E-18 109.8 3.9 31 42-74 15-45 (207)
80 3i8s_A Ferrous iron transport 99.4 3.6E-12 1.2E-16 106.8 11.9 90 50-139 4-98 (274)
81 2dby_A GTP-binding protein; GD 99.4 1.8E-12 6.1E-17 113.1 9.9 88 51-138 3-111 (368)
82 3b85_A Phosphate starvation-in 99.4 3.4E-14 1.2E-18 114.7 -1.2 127 44-198 19-158 (208)
83 2gj8_A MNME, tRNA modification 99.4 4.6E-12 1.6E-16 98.4 10.5 91 49-139 4-96 (172)
84 3b1v_A Ferrous iron uptake tra 99.3 1.3E-12 4.4E-17 109.5 7.5 90 49-139 3-93 (272)
85 2wji_A Ferrous iron transport 99.3 1.5E-11 5.2E-16 94.5 12.4 90 50-139 4-94 (165)
86 3lxx_A GTPase IMAP family memb 99.3 1.3E-11 4.6E-16 100.8 12.7 105 49-153 29-140 (239)
87 3k53_A Ferrous iron transport 99.3 2E-11 6.8E-16 101.8 11.1 90 50-139 4-94 (271)
88 3a1s_A Iron(II) transport prot 99.3 3.1E-11 1.1E-15 100.3 12.0 91 50-140 6-97 (258)
89 1xzp_A Probable tRNA modificat 99.3 1.4E-11 4.7E-16 111.1 10.6 91 49-139 243-336 (482)
90 3gee_A MNME, tRNA modification 99.3 5.9E-12 2E-16 113.3 7.4 156 49-211 233-396 (476)
91 3lxw_A GTPase IMAP family memb 99.3 2.7E-11 9.1E-16 100.0 10.4 90 49-138 21-117 (247)
92 3szr_A Interferon-induced GTP- 99.3 6.8E-12 2.3E-16 116.1 7.4 151 51-225 47-226 (608)
93 1oix_A RAS-related protein RAB 99.2 6.8E-11 2.3E-15 93.2 11.1 83 50-139 30-114 (191)
94 2wjg_A FEOB, ferrous iron tran 99.2 7.7E-11 2.6E-15 91.9 11.1 89 50-138 8-97 (188)
95 4aby_A DNA repair protein RECN 99.2 1.8E-11 6.2E-16 107.8 8.1 41 31-74 45-85 (415)
96 3b9q_A Chloroplast SRP recepto 99.2 2.1E-11 7.1E-16 103.7 8.1 48 38-98 91-138 (302)
97 2eyu_A Twitching motility prot 99.2 3E-11 1E-15 100.7 8.7 48 36-98 16-64 (261)
98 3pih_A Uvrabc system protein A 99.2 2E-10 6.7E-15 110.3 13.7 29 36-66 599-627 (916)
99 2pt7_A CAG-ALFA; ATPase, prote 99.2 4.7E-11 1.6E-15 102.7 8.6 48 37-97 161-208 (330)
100 2vf7_A UVRA2, excinuclease ABC 99.2 1.1E-11 3.6E-16 118.1 4.6 36 36-73 512-548 (842)
101 4dcu_A GTP-binding protein ENG 99.2 5.2E-11 1.8E-15 106.5 8.4 103 50-152 24-129 (456)
102 1ye8_A Protein THEP1, hypothet 99.2 6.8E-12 2.3E-16 98.7 2.2 50 160-209 99-152 (178)
103 2hjg_A GTP-binding protein ENG 99.2 1.7E-10 5.8E-15 102.7 11.5 91 49-139 175-270 (436)
104 2og2_A Putative signal recogni 99.2 5.4E-11 1.9E-15 103.3 7.8 48 38-98 148-195 (359)
105 4dcu_A GTP-binding protein ENG 99.2 2.8E-10 9.4E-15 101.8 12.5 91 49-139 195-290 (456)
106 3sop_A Neuronal-specific septi 99.2 4.8E-12 1.7E-16 106.0 0.9 37 51-98 4-40 (270)
107 4dhe_A Probable GTP-binding pr 99.1 2.4E-10 8.1E-15 91.7 10.6 157 49-211 29-209 (223)
108 2f9l_A RAB11B, member RAS onco 99.1 2.6E-10 9.1E-15 90.2 10.7 83 50-139 6-90 (199)
109 2hjg_A GTP-binding protein ENG 99.1 4.6E-11 1.6E-15 106.3 6.3 103 50-152 4-109 (436)
110 2qag_B Septin-6, protein NEDD5 99.1 1.1E-10 3.7E-15 103.4 8.5 142 37-187 30-203 (427)
111 2dyk_A GTP-binding protein; GT 99.1 4.3E-10 1.5E-14 85.1 10.7 102 51-152 3-106 (161)
112 4a74_A DNA repair and recombin 99.1 7.9E-11 2.7E-15 94.9 6.5 31 43-75 21-51 (231)
113 2qu8_A Putative nucleolar GTP- 99.1 4.9E-09 1.7E-13 84.7 16.7 91 49-139 29-121 (228)
114 1htw_A HI0065; nucleotide-bind 99.1 1.2E-11 4E-16 95.6 1.0 50 36-99 22-71 (158)
115 1tf7_A KAIC; homohexamer, hexa 99.1 1.8E-11 6E-16 111.5 2.3 141 33-198 24-185 (525)
116 2ehv_A Hypothetical protein PH 99.1 3.7E-12 1.3E-16 104.1 -2.4 28 43-72 26-55 (251)
117 4dsu_A GTPase KRAS, isoform 2B 99.1 2.5E-09 8.4E-14 83.0 13.7 148 50-209 5-162 (189)
118 3geh_A MNME, tRNA modification 99.1 5E-11 1.7E-15 106.9 4.3 91 49-139 224-316 (462)
119 2obl_A ESCN; ATPase, hydrolase 99.1 2.2E-10 7.5E-15 99.2 7.7 51 33-97 58-108 (347)
120 1m2o_B GTP-binding protein SAR 99.1 2.4E-09 8.2E-14 84.1 13.1 91 36-139 13-103 (190)
121 2xtp_A GTPase IMAP family memb 99.1 1.2E-09 4.2E-14 90.1 11.7 90 49-138 22-117 (260)
122 2ygr_A Uvrabc system protein A 99.1 8.9E-10 3.1E-14 105.9 11.8 33 36-70 657-689 (993)
123 1s96_A Guanylate kinase, GMP k 99.0 3.4E-10 1.2E-14 91.8 7.3 112 43-186 12-128 (219)
124 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-11 8.3E-16 104.8 0.4 40 34-75 42-81 (337)
125 2r6f_A Excinuclease ABC subuni 99.0 4.3E-10 1.5E-14 107.8 9.0 33 36-70 639-671 (972)
126 3qq5_A Small GTP-binding prote 99.0 3.8E-10 1.3E-14 100.1 8.1 155 49-211 34-194 (423)
127 3tkl_A RAS-related protein RAB 99.0 2.5E-09 8.6E-14 83.6 11.8 83 50-139 17-101 (196)
128 3thx_B DNA mismatch repair pro 99.0 1.1E-10 3.6E-15 112.2 4.5 38 34-73 660-697 (918)
129 2bov_A RAla, RAS-related prote 99.0 5.9E-09 2E-13 82.1 13.4 82 50-139 15-98 (206)
130 3thx_A DNA mismatch repair pro 99.0 1.1E-09 3.6E-14 105.5 10.4 32 36-69 651-682 (934)
131 1wms_A RAB-9, RAB9, RAS-relate 99.0 9.7E-09 3.3E-13 78.8 13.8 151 50-209 8-170 (177)
132 2a9k_A RAS-related protein RAL 99.0 5.5E-09 1.9E-13 80.7 12.4 82 50-139 19-102 (187)
133 2lkc_A Translation initiation 99.0 1.4E-08 4.7E-13 78.0 14.4 84 49-139 8-91 (178)
134 2dpy_A FLII, flagellum-specifi 99.0 6.5E-10 2.2E-14 99.0 7.5 49 34-96 145-193 (438)
135 3tw8_B RAS-related protein RAB 99.0 4.9E-09 1.7E-13 80.6 11.6 84 49-139 9-94 (181)
136 3cph_A RAS-related protein SEC 99.0 5.2E-09 1.8E-13 83.0 11.9 84 49-139 20-105 (213)
137 1u8z_A RAS-related protein RAL 99.0 6.3E-09 2.2E-13 78.7 11.7 82 50-139 5-88 (168)
138 3def_A T7I23.11 protein; chlor 99.0 5.9E-09 2E-13 86.4 12.2 117 7-137 8-127 (262)
139 1z6g_A Guanylate kinase; struc 99.0 1.9E-10 6.6E-15 93.0 3.0 36 36-73 12-47 (218)
140 2y8e_A RAB-protein 6, GH09086P 99.0 6.7E-09 2.3E-13 79.6 11.4 83 50-139 15-99 (179)
141 2fn4_A P23, RAS-related protei 99.0 1.2E-08 4.1E-13 78.3 12.8 83 49-139 9-93 (181)
142 1g16_A RAS-related protein SEC 99.0 5E-09 1.7E-13 79.7 10.3 83 50-139 4-88 (170)
143 1f6b_A SAR1; gtpases, N-termin 99.0 9.2E-09 3.1E-13 81.3 12.2 88 39-139 18-105 (198)
144 1fzq_A ADP-ribosylation factor 99.0 1.3E-08 4.5E-13 79.2 12.9 77 49-139 16-96 (181)
145 2h57_A ADP-ribosylation factor 98.9 5.6E-09 1.9E-13 81.6 10.8 83 49-139 21-103 (190)
146 3cbq_A GTP-binding protein REM 98.9 1.8E-08 6.1E-13 79.5 13.6 85 49-139 23-109 (195)
147 2bcg_Y Protein YP2, GTP-bindin 98.9 9.2E-09 3.1E-13 81.4 12.0 83 50-139 9-93 (206)
148 3q85_A GTP-binding protein REM 98.9 7.5E-09 2.6E-13 78.8 10.9 147 51-209 4-163 (169)
149 1cr0_A DNA primase/helicase; R 98.9 2.9E-10 9.9E-15 95.7 3.0 40 34-75 22-61 (296)
150 2ce2_X GTPase HRAS; signaling 98.9 2.9E-08 9.9E-13 74.7 13.9 147 51-209 5-161 (166)
151 3r7w_A Gtpase1, GTP-binding pr 98.9 1.9E-08 6.6E-13 85.3 14.3 89 49-139 3-93 (307)
152 2i3b_A HCR-ntpase, human cance 98.9 7.6E-10 2.6E-14 87.8 5.1 26 49-74 1-26 (189)
153 1h65_A Chloroplast outer envel 98.9 8.8E-09 3E-13 85.6 11.8 118 6-137 10-130 (270)
154 3clv_A RAB5 protein, putative; 98.9 1.7E-08 5.9E-13 78.7 12.9 144 49-209 7-200 (208)
155 3pqc_A Probable GTP-binding pr 98.9 2.1E-09 7.3E-14 83.7 7.5 152 49-209 23-190 (195)
156 3kkq_A RAS-related protein M-R 98.9 2.2E-08 7.4E-13 77.4 13.2 83 49-139 18-102 (183)
157 1kao_A RAP2A; GTP-binding prot 98.9 2.3E-08 7.9E-13 75.5 13.0 82 50-139 4-87 (167)
158 2efe_B Small GTP-binding prote 98.9 3.2E-08 1.1E-12 76.1 13.9 151 50-211 13-173 (181)
159 1zj6_A ADP-ribosylation factor 98.9 1.6E-08 5.6E-13 78.7 12.4 81 49-139 16-96 (187)
160 1svi_A GTP-binding protein YSX 98.9 3E-09 1E-13 83.2 8.0 151 49-208 23-190 (195)
161 2hxs_A RAB-26, RAS-related pro 98.9 1.4E-08 4.9E-13 77.9 11.7 83 50-139 7-92 (178)
162 3con_A GTPase NRAS; structural 98.9 1.7E-08 5.9E-13 78.6 12.2 148 50-209 22-179 (190)
163 1ek0_A Protein (GTP-binding pr 98.9 2E-08 6.8E-13 76.2 12.2 83 50-139 4-88 (170)
164 1x3s_A RAS-related protein RAB 98.9 1.9E-08 6.3E-13 78.4 12.3 152 49-211 15-176 (195)
165 3t5g_A GTP-binding protein RHE 98.9 2.9E-08 9.8E-13 76.6 13.0 82 50-139 7-90 (181)
166 1z2a_A RAS-related protein RAB 98.9 2.3E-08 7.7E-13 75.8 12.1 83 50-139 6-90 (168)
167 1c1y_A RAS-related protein RAP 98.9 2.3E-08 7.9E-13 75.7 12.1 82 50-139 4-87 (167)
168 2a5j_A RAS-related protein RAB 98.9 1.8E-08 6.2E-13 78.8 11.7 83 50-139 22-106 (191)
169 2qpt_A EH domain-containing pr 98.9 2.6E-08 8.9E-13 91.1 14.5 170 9-186 28-244 (550)
170 1z0f_A RAB14, member RAS oncog 98.9 2.3E-08 8E-13 76.6 12.2 83 49-139 15-100 (179)
171 1r8s_A ADP-ribosylation factor 98.9 1.7E-08 5.9E-13 76.4 11.1 79 51-139 2-80 (164)
172 1vg8_A RAS-related protein RAB 98.9 2.1E-08 7.3E-13 79.0 11.9 84 49-139 8-93 (207)
173 2fu5_C RAS-related protein RAB 98.9 4.4E-09 1.5E-13 81.4 7.8 84 49-139 8-93 (183)
174 1ksh_A ARF-like protein 2; sma 98.9 1.5E-08 5.1E-13 78.6 10.9 81 49-139 18-98 (186)
175 2bme_A RAB4A, RAS-related prot 98.9 1.6E-08 5.3E-13 78.3 10.9 84 49-139 10-95 (186)
176 2h17_A ADP-ribosylation factor 98.9 1.8E-08 6.3E-13 78.1 11.1 81 49-139 21-101 (181)
177 1ky3_A GTP-binding protein YPT 98.9 1.6E-08 5.6E-13 77.6 10.7 152 49-209 8-174 (182)
178 2q3h_A RAS homolog gene family 98.9 1.7E-08 5.9E-13 79.4 11.0 83 49-139 20-104 (201)
179 3t5d_A Septin-7; GTP-binding p 98.9 3.9E-08 1.3E-12 81.9 13.6 60 50-109 9-78 (274)
180 2yhs_A FTSY, cell division pro 98.9 1.4E-09 4.9E-14 97.7 5.0 48 37-97 283-330 (503)
181 1zd9_A ADP-ribosylation factor 98.9 5.5E-08 1.9E-12 75.9 13.4 82 49-139 22-103 (188)
182 2g6b_A RAS-related protein RAB 98.9 1.7E-08 5.8E-13 77.6 10.3 84 49-139 10-96 (180)
183 1e69_A Chromosome segregation 98.9 3.1E-09 1.1E-13 90.8 6.6 33 38-73 16-48 (322)
184 3qf7_A RAD50; ABC-ATPase, ATPa 98.8 5.3E-09 1.8E-13 91.0 7.7 57 159-218 302-362 (365)
185 1z08_A RAS-related protein RAB 98.8 9.1E-09 3.1E-13 78.3 8.2 83 50-139 7-91 (170)
186 2o52_A RAS-related protein RAB 98.8 1.2E-08 4.1E-13 80.6 9.1 84 49-139 25-110 (200)
187 4bas_A ADP-ribosylation factor 98.8 1.8E-08 6.3E-13 78.8 10.1 83 49-139 17-99 (199)
188 2b6h_A ADP-ribosylation factor 98.8 2.3E-08 7.8E-13 78.6 10.6 81 49-139 29-109 (192)
189 3lvq_E ARF-GAP with SH3 domain 98.8 5.5E-09 1.9E-13 94.1 8.0 151 49-212 322-483 (497)
190 1z0j_A RAB-22, RAS-related pro 98.8 6.9E-08 2.4E-12 73.2 13.1 81 50-139 7-91 (170)
191 3bc1_A RAS-related protein RAB 98.8 4.1E-08 1.4E-12 76.1 11.9 83 50-139 12-106 (195)
192 1puj_A YLQF, conserved hypothe 98.8 1.4E-08 4.7E-13 85.4 9.7 58 49-109 120-178 (282)
193 3reg_A RHO-like small GTPase; 98.8 2.1E-08 7.3E-13 78.5 10.2 83 49-139 23-107 (194)
194 2hup_A RAS-related protein RAB 98.8 3.9E-08 1.3E-12 77.8 11.7 84 49-139 29-114 (201)
195 2il1_A RAB12; G-protein, GDP, 98.8 3.5E-08 1.2E-12 77.4 11.3 83 50-139 27-111 (192)
196 3lnc_A Guanylate kinase, GMP k 98.8 9.4E-10 3.2E-14 89.3 2.2 38 36-75 16-54 (231)
197 1moz_A ARL1, ADP-ribosylation 98.8 8.5E-09 2.9E-13 79.7 7.6 81 49-139 18-98 (183)
198 2f7s_A C25KG, RAS-related prot 98.8 4.1E-08 1.4E-12 78.2 11.8 149 50-209 26-195 (217)
199 2nzj_A GTP-binding protein REM 98.8 9.6E-08 3.3E-12 72.9 13.4 83 50-139 5-90 (175)
200 1upt_A ARL1, ADP-ribosylation 98.8 1.2E-08 4E-13 77.8 8.0 81 49-139 7-87 (171)
201 2fg5_A RAB-22B, RAS-related pr 98.8 2.9E-08 1E-12 77.7 10.4 150 50-212 24-185 (192)
202 2ew1_A RAS-related protein RAB 98.8 3.2E-08 1.1E-12 78.6 10.7 83 50-139 27-111 (201)
203 1zbd_A Rabphilin-3A; G protein 98.8 8E-08 2.7E-12 75.6 12.9 83 50-139 9-93 (203)
204 3q72_A GTP-binding protein RAD 98.8 7.1E-08 2.4E-12 73.1 12.2 80 50-139 3-85 (166)
205 3cpj_B GTP-binding protein YPT 98.8 3.6E-08 1.2E-12 79.1 11.0 83 50-139 14-98 (223)
206 2atx_A Small GTP binding prote 98.8 4.5E-08 1.5E-12 76.5 11.3 83 49-139 18-102 (194)
207 1ewq_A DNA mismatch repair pro 98.8 6.1E-10 2.1E-14 105.3 0.4 34 36-74 568-601 (765)
208 3ec1_A YQEH GTPase; atnos1, at 98.8 6.2E-09 2.1E-13 90.7 6.6 59 49-110 162-226 (369)
209 3jvv_A Twitching mobility prot 98.8 3.5E-08 1.2E-12 85.5 11.3 27 49-75 123-149 (356)
210 3t1o_A Gliding protein MGLA; G 98.8 4.8E-08 1.7E-12 76.0 11.1 150 50-209 15-188 (198)
211 2oil_A CATX-8, RAS-related pro 98.8 7.9E-08 2.7E-12 75.0 12.3 83 50-139 26-110 (193)
212 3euj_A Chromosome partition pr 98.8 5.1E-10 1.8E-14 100.5 -0.5 52 34-99 17-68 (483)
213 2ged_A SR-beta, signal recogni 98.8 8.3E-09 2.8E-13 80.6 6.4 79 49-137 48-129 (193)
214 2w0m_A SSO2452; RECA, SSPF, un 98.8 2E-09 6.8E-14 86.5 2.8 36 38-75 13-49 (235)
215 3o47_A ADP-ribosylation factor 98.8 2.6E-08 8.9E-13 85.4 9.7 148 50-210 166-324 (329)
216 3l0i_B RAS-related protein RAB 98.8 2.4E-09 8.3E-14 84.5 3.0 84 49-139 33-118 (199)
217 1z06_A RAS-related protein RAB 98.8 9.5E-08 3.3E-12 74.4 11.9 84 50-139 21-106 (189)
218 2ewv_A Twitching motility prot 98.8 1.5E-08 5.1E-13 88.4 7.8 40 44-96 133-173 (372)
219 4djt_A GTP-binding nuclear pro 98.8 9E-08 3.1E-12 76.2 11.8 153 50-211 12-173 (218)
220 2yc2_C IFT27, small RAB-relate 98.8 1.1E-08 3.9E-13 80.5 6.4 84 49-139 20-109 (208)
221 2gf9_A RAS-related protein RAB 98.8 5.7E-08 1.9E-12 75.7 10.4 83 50-139 23-107 (189)
222 1r2q_A RAS-related protein RAB 98.8 1.1E-07 3.8E-12 72.0 11.7 83 50-139 7-91 (170)
223 1wb1_A Translation elongation 98.7 1.6E-07 5.6E-12 84.5 14.6 148 49-209 19-185 (482)
224 2gza_A Type IV secretion syste 98.7 2.3E-09 8E-14 93.1 2.2 46 38-96 166-211 (361)
225 1mh1_A RAC1; GTP-binding, GTPa 98.7 4.1E-08 1.4E-12 75.8 9.1 82 50-139 6-89 (186)
226 2p5s_A RAS and EF-hand domain 98.7 8.9E-08 3E-12 75.3 11.2 84 49-139 28-113 (199)
227 3oes_A GTPase rhebl1; small GT 98.7 9.8E-08 3.4E-12 75.2 11.4 83 49-139 24-108 (201)
228 2atv_A RERG, RAS-like estrogen 98.7 1.2E-07 4.3E-12 74.2 11.9 82 49-139 28-111 (196)
229 2iwr_A Centaurin gamma 1; ANK 98.7 1.3E-07 4.4E-12 72.7 11.3 76 50-139 8-85 (178)
230 3bwd_D RAC-like GTP-binding pr 98.7 3E-08 1E-12 76.3 7.7 83 49-139 8-92 (182)
231 3e70_C DPA, signal recognition 98.7 6.3E-09 2.1E-13 89.3 4.1 41 45-98 127-167 (328)
232 3ec2_A DNA replication protein 98.7 7.4E-09 2.5E-13 80.7 4.2 33 41-75 32-64 (180)
233 4gzl_A RAS-related C3 botulinu 98.7 3.4E-08 1.1E-12 78.3 8.0 83 49-139 30-114 (204)
234 2x77_A ADP-ribosylation factor 98.7 6.5E-08 2.2E-12 75.3 9.5 81 49-139 22-102 (189)
235 1wb9_A DNA mismatch repair pro 98.7 3.3E-09 1.1E-13 100.8 2.3 38 34-74 595-632 (800)
236 2jeo_A Uridine-cytidine kinase 98.7 5E-09 1.7E-13 85.9 3.0 41 31-73 9-49 (245)
237 2j1l_A RHO-related GTP-binding 98.7 6.6E-08 2.3E-12 77.2 9.5 82 50-139 35-118 (214)
238 2j0v_A RAC-like GTP-binding pr 98.7 7.9E-08 2.7E-12 76.2 9.9 83 49-139 9-93 (212)
239 1f5n_A Interferon-induced guan 98.7 6.3E-08 2.2E-12 89.0 10.3 62 49-111 38-106 (592)
240 2qag_C Septin-7; cell cycle, c 98.7 1.2E-07 4E-12 83.9 11.5 40 28-75 18-57 (418)
241 3t34_A Dynamin-related protein 98.7 1.2E-07 4E-12 82.1 11.2 33 36-73 26-58 (360)
242 3ihw_A Centg3; RAS, centaurin, 98.7 1.8E-07 6.1E-12 73.0 11.2 77 49-139 20-98 (184)
243 3gj0_A GTP-binding nuclear pro 98.7 2.1E-08 7E-13 80.4 5.9 84 49-139 15-100 (221)
244 2qnr_A Septin-2, protein NEDD5 98.7 7.5E-08 2.6E-12 81.5 9.5 37 31-75 8-45 (301)
245 2erx_A GTP-binding protein DI- 98.7 6.3E-07 2.1E-11 67.9 13.7 83 49-139 3-87 (172)
246 2gf0_A GTP-binding protein DI- 98.7 3E-07 1E-11 71.7 12.1 83 49-139 8-92 (199)
247 1u0l_A Probable GTPase ENGC; p 98.7 6.1E-09 2.1E-13 88.2 2.4 39 42-93 164-202 (301)
248 3c5c_A RAS-like protein 12; GD 98.6 3.5E-07 1.2E-11 71.3 12.0 82 49-139 21-104 (187)
249 3ney_A 55 kDa erythrocyte memb 98.6 9E-09 3.1E-13 82.1 2.7 58 41-102 13-72 (197)
250 2www_A Methylmalonic aciduria 98.6 1.5E-08 5E-13 87.7 4.2 80 49-138 74-199 (349)
251 1zp6_A Hypothetical protein AT 98.6 1.5E-08 5.3E-13 79.2 4.0 40 44-98 6-45 (191)
252 2o8b_B DNA mismatch repair pro 98.6 2.7E-08 9.1E-13 96.8 6.0 40 35-75 770-814 (1022)
253 2gco_A H9, RHO-related GTP-bin 98.6 2.1E-07 7.1E-12 73.4 10.1 82 50-139 26-109 (201)
254 1lvg_A Guanylate kinase, GMP k 98.6 8E-09 2.7E-13 82.2 1.8 50 49-100 4-55 (198)
255 1pzn_A RAD51, DNA repair and r 98.6 1.1E-07 3.8E-12 82.2 9.1 31 41-73 125-155 (349)
256 3h2y_A GTPase family protein; 98.6 2.8E-08 9.5E-13 86.6 5.2 59 49-110 160-225 (368)
257 3sjy_A Translation initiation 98.6 7.5E-07 2.6E-11 78.2 14.4 149 49-209 8-188 (403)
258 3dz8_A RAS-related protein RAB 98.6 6.7E-08 2.3E-12 75.5 6.7 84 49-139 23-108 (191)
259 2v9p_A Replication protein E1; 98.6 4.3E-09 1.5E-13 89.4 -0.3 36 36-73 115-150 (305)
260 3izq_1 HBS1P, elongation facto 98.6 2.7E-07 9.4E-12 85.3 11.7 83 49-138 167-280 (611)
261 3a00_A Guanylate kinase, GMP k 98.6 1.3E-08 4.5E-13 79.9 2.5 49 49-99 1-51 (186)
262 2zej_A Dardarin, leucine-rich 98.6 7E-08 2.4E-12 75.1 6.1 83 50-139 3-92 (184)
263 1jwy_B Dynamin A GTPase domain 98.6 1.6E-07 5.3E-12 79.3 8.7 87 50-136 25-177 (315)
264 3tr0_A Guanylate kinase, GMP k 98.6 1.8E-08 6.2E-13 79.7 2.7 32 41-74 1-32 (205)
265 2fh5_B SR-beta, signal recogni 98.6 2.1E-07 7.2E-12 73.9 8.8 80 49-138 7-90 (214)
266 3c8u_A Fructokinase; YP_612366 98.6 1.6E-08 5.6E-13 80.7 2.2 44 45-98 20-63 (208)
267 2aka_B Dynamin-1; fusion prote 98.6 4.4E-08 1.5E-12 82.0 4.8 26 49-74 26-51 (299)
268 1kgd_A CASK, peripheral plasma 98.6 2.3E-08 7.9E-13 78.1 2.8 50 49-100 5-56 (180)
269 2cxx_A Probable GTP-binding pr 98.6 2.8E-07 9.7E-12 71.3 9.0 53 51-107 3-55 (190)
270 1rj9_A FTSY, signal recognitio 98.6 2E-08 7E-13 85.2 2.5 39 49-98 102-140 (304)
271 1t9h_A YLOQ, probable GTPase E 98.6 8.2E-09 2.8E-13 87.8 0.1 32 42-75 168-199 (307)
272 2g3y_A GTP-binding protein GEM 98.5 7.6E-07 2.6E-11 71.4 11.3 84 50-139 38-124 (211)
273 2wkq_A NPH1-1, RAS-related C3 98.5 2.2E-07 7.7E-12 78.5 8.5 83 49-139 155-239 (332)
274 3q3j_B RHO-related GTP-binding 98.5 2.1E-07 7.3E-12 74.3 7.8 83 49-139 27-111 (214)
275 3p26_A Elongation factor 1 alp 98.5 5.4E-07 1.8E-11 81.0 11.3 84 49-139 33-147 (483)
276 2fv8_A H6, RHO-related GTP-bin 98.5 2.7E-07 9.3E-12 73.0 8.3 83 49-139 25-109 (207)
277 2kjq_A DNAA-related protein; s 98.5 1.1E-07 3.8E-12 72.3 5.7 27 49-75 36-62 (149)
278 3th5_A RAS-related C3 botulinu 97.9 1.1E-08 3.6E-13 81.0 0.0 83 49-139 30-114 (204)
279 1sq5_A Pantothenate kinase; P- 98.5 1.4E-08 4.9E-13 86.2 0.8 40 45-97 78-122 (308)
280 3dpu_A RAB family protein; roc 98.5 4.2E-07 1.5E-11 82.7 10.4 149 49-209 41-204 (535)
281 2j69_A Bacterial dynamin-like 98.5 1E-07 3.4E-12 89.5 6.1 87 49-139 69-213 (695)
282 2rcn_A Probable GTPase ENGC; Y 98.5 2.2E-08 7.4E-13 86.8 1.4 37 36-75 205-242 (358)
283 3j2k_7 ERF3, eukaryotic polype 98.5 1.2E-06 4E-11 78.0 12.5 84 49-139 17-131 (439)
284 1ls1_A Signal recognition part 98.5 7.2E-07 2.5E-11 75.3 10.4 115 38-188 91-209 (295)
285 2cjw_A GTP-binding protein GEM 98.5 1.4E-06 4.9E-11 68.3 11.4 84 50-139 7-93 (192)
286 1nrj_B SR-beta, signal recogni 98.5 3.9E-07 1.3E-11 72.5 8.1 76 49-137 12-93 (218)
287 2yv5_A YJEQ protein; hydrolase 98.5 3.6E-08 1.2E-12 83.6 2.1 31 42-75 160-190 (302)
288 2oap_1 GSPE-2, type II secreti 98.5 3.9E-08 1.3E-12 89.1 2.0 46 39-97 252-297 (511)
289 2p67_A LAO/AO transport system 98.5 1E-07 3.5E-12 82.0 4.5 90 37-138 46-181 (341)
290 1m7b_A RND3/RHOE small GTP-bin 98.5 5E-07 1.7E-11 70.0 8.0 82 50-139 8-91 (184)
291 2f1r_A Molybdopterin-guanine d 98.4 2.4E-08 8.2E-13 77.9 0.2 42 50-102 3-47 (171)
292 3cnl_A YLQF, putative uncharac 98.4 1.4E-07 4.7E-12 78.4 4.5 57 50-109 100-157 (262)
293 1gwn_A RHO-related GTP-binding 98.4 5.5E-07 1.9E-11 71.5 7.9 83 49-139 28-112 (205)
294 3aez_A Pantothenate kinase; tr 98.4 6.1E-08 2.1E-12 82.6 2.3 35 39-75 81-116 (312)
295 2elf_A Protein translation elo 98.4 1.7E-06 5.8E-11 75.3 11.5 72 51-138 23-94 (370)
296 3tr5_A RF-3, peptide chain rel 98.4 5.2E-07 1.8E-11 82.1 8.5 84 49-139 13-118 (528)
297 1sxj_E Activator 1 40 kDa subu 98.4 2.3E-07 8E-12 79.4 5.5 112 51-189 38-162 (354)
298 3llu_A RAS-related GTP-binding 98.4 1.3E-05 4.6E-10 62.6 15.2 118 49-174 20-143 (196)
299 2qag_A Septin-2, protein NEDD5 98.4 1.8E-06 6.3E-11 74.8 10.4 57 51-107 39-106 (361)
300 2cvh_A DNA repair and recombin 98.4 3.1E-06 1.1E-10 67.2 10.9 26 44-71 17-42 (220)
301 1kk1_A EIF2gamma; initiation o 98.3 8.3E-06 2.8E-10 71.7 14.0 148 50-209 11-196 (410)
302 1qhl_A Protein (cell division 98.3 9.4E-09 3.2E-13 83.8 -4.6 44 41-98 22-65 (227)
303 3tau_A Guanylate kinase, GMP k 98.3 2.4E-07 8.2E-12 74.0 3.2 42 49-90 8-51 (208)
304 2xex_A Elongation factor G; GT 98.3 2.9E-06 1E-10 79.5 11.0 84 49-139 10-111 (693)
305 1tf7_A KAIC; homohexamer, hexa 98.3 2.7E-07 9.2E-12 83.8 3.6 33 41-75 275-307 (525)
306 2dy1_A Elongation factor G; tr 98.3 3.3E-06 1.1E-10 78.9 11.0 90 41-139 3-110 (665)
307 1nlf_A Regulatory protein REPA 98.3 5.1E-07 1.7E-11 75.2 5.0 28 44-73 27-54 (279)
308 1lw7_A Transcriptional regulat 98.3 1.2E-07 4.1E-12 82.2 1.2 37 39-75 160-196 (365)
309 2j41_A Guanylate kinase; GMP, 98.3 3.2E-07 1.1E-11 72.4 3.5 31 43-75 2-32 (207)
310 2x2e_A Dynamin-1; nitration, h 98.3 2.1E-06 7.2E-11 74.0 8.9 25 50-74 32-56 (353)
311 3izy_P Translation initiation 98.3 1.7E-07 5.9E-12 85.3 2.1 84 49-139 4-88 (537)
312 3asz_A Uridine kinase; cytidin 98.3 2.1E-07 7.2E-12 74.0 2.1 27 49-75 6-32 (211)
313 2bdt_A BH3686; alpha-beta prot 98.3 1.8E-07 6.2E-12 73.2 1.7 36 49-98 2-37 (189)
314 2x8a_A Nuclear valosin-contain 98.3 9.2E-08 3.1E-12 79.9 -0.2 38 33-74 32-69 (274)
315 1zun_B Sulfate adenylate trans 98.3 9.8E-06 3.3E-10 71.8 12.8 83 50-139 25-140 (434)
316 1p9r_A General secretion pathw 98.3 2.2E-07 7.5E-12 82.2 2.1 39 49-98 167-205 (418)
317 2bbw_A Adenylate kinase 4, AK4 98.3 1.3E-07 4.6E-12 77.3 0.6 27 49-75 27-56 (246)
318 2c78_A Elongation factor TU-A; 98.3 3.3E-06 1.1E-10 74.1 9.6 84 49-139 11-111 (405)
319 3kta_A Chromosome segregation 98.2 3.4E-07 1.2E-11 71.0 2.5 35 38-75 18-52 (182)
320 4dkx_A RAS-related protein RAB 98.2 1.1E-05 3.6E-10 65.0 11.0 150 50-211 14-174 (216)
321 3vaa_A Shikimate kinase, SK; s 98.2 5.8E-07 2E-11 71.1 3.4 37 35-73 13-49 (199)
322 2h5e_A Peptide chain release f 98.2 7.5E-06 2.6E-10 74.5 10.8 84 49-139 13-118 (529)
323 1nij_A Hypothetical protein YJ 98.2 4.2E-07 1.4E-11 77.5 2.2 46 50-98 5-50 (318)
324 3p32_A Probable GTPase RV1496/ 98.2 4.7E-06 1.6E-10 72.0 8.6 24 49-72 79-102 (355)
325 2px0_A Flagellar biosynthesis 98.2 1.1E-05 3.6E-10 68.2 10.4 27 49-75 105-131 (296)
326 4e22_A Cytidylate kinase; P-lo 98.2 2.8E-07 9.5E-12 75.9 0.6 27 49-75 27-56 (252)
327 1ixz_A ATP-dependent metallopr 98.1 1.7E-07 5.7E-12 76.9 -1.4 35 35-73 39-73 (254)
328 1s0u_A EIF-2-gamma, translatio 98.1 2.3E-05 7.8E-10 68.8 12.3 148 49-209 8-194 (408)
329 1dar_A EF-G, elongation factor 98.1 1.3E-05 4.4E-10 75.1 11.2 84 49-139 12-113 (691)
330 1vma_A Cell division protein F 98.1 1.2E-06 4.2E-11 74.3 3.8 35 39-75 96-130 (306)
331 1jny_A EF-1-alpha, elongation 98.1 1.1E-05 3.8E-10 71.5 10.0 83 50-139 7-120 (435)
332 1f60_A Elongation factor EEF1A 98.1 9.1E-06 3.1E-10 72.6 9.3 83 50-139 8-121 (458)
333 3lda_A DNA repair protein RAD5 98.1 3.4E-06 1.2E-10 74.1 6.4 30 44-75 175-206 (400)
334 1iy2_A ATP-dependent metallopr 98.1 2.1E-07 7.2E-12 77.5 -1.4 37 33-73 61-97 (278)
335 3mca_A HBS1, elongation factor 98.1 5.3E-07 1.8E-11 83.1 1.1 82 50-138 178-290 (592)
336 3uie_A Adenylyl-sulfate kinase 98.1 2.7E-07 9.3E-12 73.0 -0.9 31 42-74 20-50 (200)
337 1zu4_A FTSY; GTPase, signal re 98.1 8.5E-07 2.9E-11 75.7 1.9 36 38-75 96-131 (320)
338 3q5d_A Atlastin-1; G protein, 98.1 2.5E-06 8.7E-11 75.9 5.0 60 50-109 68-153 (447)
339 1zo1_I IF2, translation initia 98.1 3.4E-06 1.2E-10 76.2 5.8 84 49-139 4-87 (501)
340 1rz3_A Hypothetical protein rb 98.1 1E-06 3.4E-11 69.9 1.9 27 49-75 22-48 (201)
341 1r5b_A Eukaryotic peptide chai 98.0 2.1E-05 7.1E-10 70.4 10.2 84 49-139 43-157 (467)
342 4eun_A Thermoresistant glucoki 98.0 1.8E-06 6.3E-11 68.2 2.9 28 44-73 26-53 (200)
343 1d2e_A Elongation factor TU (E 98.0 1.6E-05 5.4E-10 69.7 8.9 83 50-139 4-102 (397)
344 1ex7_A Guanylate kinase; subst 98.0 2E-06 6.8E-11 67.8 2.2 49 52-102 4-54 (186)
345 2o5v_A DNA replication and rep 98.0 2E-06 7E-11 74.5 2.0 36 33-71 13-48 (359)
346 2vp4_A Deoxynucleoside kinase; 98.0 3.3E-06 1.1E-10 68.3 2.9 30 41-72 14-43 (230)
347 3cb4_D GTP-binding protein LEP 97.9 6.9E-05 2.4E-09 69.0 11.4 82 51-139 6-107 (599)
348 1kag_A SKI, shikimate kinase I 97.9 3.5E-06 1.2E-10 64.6 2.3 26 49-74 4-29 (173)
349 2qor_A Guanylate kinase; phosp 97.9 3.6E-06 1.2E-10 66.7 2.5 43 49-91 12-56 (204)
350 1n0w_A DNA repair protein RAD5 97.9 1.1E-05 3.7E-10 65.0 4.8 27 44-72 21-47 (243)
351 3zvr_A Dynamin-1; hydrolase, D 97.9 4.7E-05 1.6E-09 71.8 9.2 28 50-77 52-80 (772)
352 3c5h_A Glucocorticoid receptor 97.8 5.6E-05 1.9E-09 62.0 8.6 24 49-72 19-51 (255)
353 2ywe_A GTP-binding protein LEP 97.8 0.00013 4.5E-09 67.2 11.8 83 50-139 7-109 (600)
354 1knq_A Gluconate kinase; ALFA/ 97.8 7.6E-06 2.6E-10 62.9 3.0 24 49-72 8-31 (175)
355 2rdo_7 EF-G, elongation factor 97.8 0.00012 4E-09 68.8 11.5 84 49-139 10-118 (704)
356 3nwj_A ATSK2; P loop, shikimat 97.8 1.3E-06 4.5E-11 72.0 -1.7 53 21-73 17-72 (250)
357 1svm_A Large T antigen; AAA+ f 97.8 4.1E-06 1.4E-10 73.1 1.3 33 39-73 161-193 (377)
358 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 9.5E-06 3.2E-10 61.4 3.1 32 37-71 14-45 (149)
359 1n0u_A EF-2, elongation factor 97.8 7.1E-05 2.4E-09 71.6 9.7 83 50-139 20-134 (842)
360 3cr8_A Sulfate adenylyltranfer 97.8 4.3E-06 1.5E-10 76.4 1.2 43 43-98 365-409 (552)
361 2qt1_A Nicotinamide riboside k 97.8 1.2E-05 4.2E-10 63.5 3.7 32 40-73 14-45 (207)
362 3kl4_A SRP54, signal recogniti 97.8 0.00028 9.6E-09 62.5 12.2 27 49-75 97-123 (433)
363 2dhr_A FTSH; AAA+ protein, hex 97.7 1E-05 3.6E-10 73.0 2.8 38 32-73 51-88 (499)
364 1in4_A RUVB, holliday junction 97.7 8.9E-07 3.1E-11 75.8 -4.2 24 50-73 52-75 (334)
365 3r7w_B Gtpase2, GTP-binding pr 97.7 0.0004 1.4E-08 59.3 12.3 120 51-176 1-122 (331)
366 3tqc_A Pantothenate kinase; bi 97.7 9.9E-06 3.4E-10 69.1 2.2 26 49-74 92-117 (321)
367 1w1w_A Structural maintenance 97.7 1.4E-05 4.7E-10 70.7 2.7 32 42-75 21-52 (430)
368 1y63_A LMAJ004144AAA protein; 97.7 2.5E-05 8.7E-10 60.7 3.4 32 39-72 2-33 (184)
369 1cke_A CK, MSSA, protein (cyti 97.6 2.5E-05 8.5E-10 62.4 2.9 25 49-73 5-29 (227)
370 1jjv_A Dephospho-COA kinase; P 97.6 3.2E-05 1.1E-09 61.0 3.3 22 51-72 4-25 (206)
371 2j37_W Signal recognition part 97.6 0.0005 1.7E-08 62.0 11.4 90 49-139 101-226 (504)
372 3qks_A DNA double-strand break 97.6 3.5E-05 1.2E-09 61.3 3.1 32 37-71 14-45 (203)
373 3avx_A Elongation factor TS, e 97.6 0.0002 6.7E-09 70.3 8.7 84 49-139 296-395 (1289)
374 4eaq_A DTMP kinase, thymidylat 97.6 4.2E-05 1.4E-09 61.9 3.5 36 37-74 13-51 (229)
375 2if2_A Dephospho-COA kinase; a 97.5 3.5E-05 1.2E-09 60.6 2.6 22 51-72 3-24 (204)
376 1m7g_A Adenylylsulfate kinase; 97.5 2.2E-05 7.4E-10 62.5 1.4 30 44-75 22-51 (211)
377 2ffh_A Protein (FFH); SRP54, s 97.5 5.7E-05 2E-09 66.8 3.9 34 38-75 91-124 (425)
378 2pez_A Bifunctional 3'-phospho 97.5 5.5E-05 1.9E-09 58.3 3.0 26 49-74 5-30 (179)
379 3vqt_A RF-3, peptide chain rel 97.5 0.00089 3E-08 61.0 11.3 100 49-155 31-153 (548)
380 1g7s_A Translation initiation 97.5 0.00022 7.6E-09 65.6 7.3 81 49-139 5-106 (594)
381 2v3c_C SRP54, signal recogniti 97.4 4.1E-05 1.4E-09 67.9 2.3 25 49-73 99-123 (432)
382 3dm5_A SRP54, signal recogniti 97.4 0.00064 2.2E-08 60.3 9.8 23 49-71 100-122 (443)
383 3qkt_A DNA double-strand break 97.4 4.3E-05 1.5E-09 65.4 1.9 50 159-211 271-324 (339)
384 1odf_A YGR205W, hypothetical 3 97.4 4.8E-05 1.7E-09 63.9 2.0 27 49-75 31-57 (290)
385 1np6_A Molybdopterin-guanine d 97.4 7.8E-05 2.7E-09 57.9 3.0 25 50-74 7-31 (174)
386 3m6a_A ATP-dependent protease 97.4 5.6E-05 1.9E-09 68.9 2.4 36 49-95 108-143 (543)
387 2yvu_A Probable adenylyl-sulfa 97.4 6.9E-05 2.3E-09 58.1 2.5 27 49-75 13-39 (186)
388 1lv7_A FTSH; alpha/beta domain 97.4 5.4E-05 1.9E-09 61.8 1.9 34 37-74 37-70 (257)
389 1j8m_F SRP54, signal recogniti 97.3 0.0001 3.5E-09 62.1 3.0 35 38-75 89-124 (297)
390 3t61_A Gluconokinase; PSI-biol 97.3 8.9E-05 3.1E-09 58.2 2.5 25 49-73 18-42 (202)
391 3cm0_A Adenylate kinase; ATP-b 97.3 0.00012 4.2E-09 56.4 3.2 23 49-71 4-26 (186)
392 3k1j_A LON protease, ATP-depen 97.3 8.5E-05 2.9E-09 68.5 2.6 36 38-75 51-86 (604)
393 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.4E-09 55.3 3.1 22 51-72 3-24 (173)
394 3lw7_A Adenylate kinase relate 97.2 0.00017 5.9E-09 54.4 3.1 19 51-69 3-21 (179)
395 2dr3_A UPF0273 protein PH0284; 97.2 0.00019 6.6E-09 57.6 3.5 28 43-72 19-46 (247)
396 1qhx_A CPT, protein (chloramph 97.2 0.00023 7.9E-09 54.4 3.4 25 49-73 3-27 (178)
397 1kht_A Adenylate kinase; phosp 97.2 0.00024 8.1E-09 54.8 3.4 24 49-72 3-26 (192)
398 2ce7_A Cell division protein F 97.1 0.0001 3.5E-09 66.1 1.1 34 36-73 40-73 (476)
399 3j25_A Tetracycline resistance 97.1 0.0009 3.1E-08 62.1 7.4 98 51-155 4-120 (638)
400 1ly1_A Polynucleotide kinase; 97.1 0.00027 9.1E-09 54.0 3.2 22 50-71 3-24 (181)
401 2jaq_A Deoxyguanosine kinase; 97.1 0.00027 9.4E-09 55.0 3.2 23 51-73 2-24 (205)
402 3hr8_A Protein RECA; alpha and 97.1 0.00019 6.5E-09 62.0 2.4 30 44-75 58-87 (356)
403 4ad8_A DNA repair protein RECN 97.1 8.1E-05 2.8E-09 67.3 0.1 38 32-72 46-83 (517)
404 2rhm_A Putative kinase; P-loop 97.1 0.00029 9.9E-09 54.5 3.3 23 49-71 5-27 (193)
405 3ice_A Transcription terminati 97.0 0.00017 5.9E-09 62.9 1.7 33 39-73 166-198 (422)
406 1via_A Shikimate kinase; struc 97.0 0.00033 1.1E-08 53.7 3.0 23 51-73 6-28 (175)
407 1q3t_A Cytidylate kinase; nucl 97.0 0.0003 1E-08 56.7 2.9 23 49-71 16-38 (236)
408 2v54_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 54.2 3.5 25 49-73 4-28 (204)
409 2plr_A DTMP kinase, probable t 97.0 0.00042 1.4E-08 54.3 3.5 25 49-73 4-28 (213)
410 3iij_A Coilin-interacting nucl 97.0 0.00036 1.2E-08 53.6 3.0 23 49-71 11-33 (180)
411 3trf_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 53.4 3.3 24 49-72 5-28 (185)
412 1nks_A Adenylate kinase; therm 97.0 0.00038 1.3E-08 53.6 3.0 23 51-73 3-25 (194)
413 1vht_A Dephospho-COA kinase; s 97.0 0.0005 1.7E-08 54.5 3.6 24 49-72 4-27 (218)
414 2c95_A Adenylate kinase 1; tra 96.9 0.00047 1.6E-08 53.4 3.3 24 49-72 9-32 (196)
415 1tev_A UMP-CMP kinase; ploop, 96.9 0.00051 1.7E-08 53.0 3.5 23 49-71 3-25 (196)
416 2wsm_A Hydrogenase expression/ 96.9 0.00036 1.2E-08 55.2 2.6 24 49-72 30-53 (221)
417 2ze6_A Isopentenyl transferase 96.9 0.00052 1.8E-08 56.2 3.4 22 51-72 3-24 (253)
418 2wwf_A Thymidilate kinase, put 96.9 0.00051 1.7E-08 53.9 3.2 24 49-72 10-33 (212)
419 2p5t_B PEZT; postsegregational 96.9 0.00038 1.3E-08 56.9 2.4 25 49-73 32-56 (253)
420 2bwj_A Adenylate kinase 5; pho 96.9 0.00058 2E-08 53.0 3.2 24 49-72 12-35 (199)
421 3fb4_A Adenylate kinase; psych 96.9 0.00057 2E-08 54.0 3.2 21 51-71 2-22 (216)
422 2z0h_A DTMP kinase, thymidylat 96.9 0.00059 2E-08 52.9 3.2 23 51-73 2-24 (197)
423 1uf9_A TT1252 protein; P-loop, 96.8 0.00068 2.3E-08 52.8 3.5 24 49-72 8-31 (203)
424 1nn5_A Similar to deoxythymidy 96.8 0.00062 2.1E-08 53.5 3.3 24 49-72 9-32 (215)
425 1gtv_A TMK, thymidylate kinase 96.8 0.00023 7.8E-09 56.1 0.7 24 51-74 2-25 (214)
426 3auy_A DNA double-strand break 96.8 0.00032 1.1E-08 60.6 1.7 37 161-197 306-345 (371)
427 1gvn_B Zeta; postsegregational 96.8 0.00061 2.1E-08 56.9 3.2 24 49-72 33-56 (287)
428 3dl0_A Adenylate kinase; phosp 96.8 0.00064 2.2E-08 53.8 3.2 21 51-71 2-22 (216)
429 3r20_A Cytidylate kinase; stru 96.8 0.00066 2.3E-08 55.2 3.2 23 49-71 9-31 (233)
430 1aky_A Adenylate kinase; ATP:A 96.8 0.00082 2.8E-08 53.4 3.5 24 49-72 4-27 (220)
431 2iyv_A Shikimate kinase, SK; t 96.8 0.00071 2.4E-08 52.0 3.1 23 50-72 3-25 (184)
432 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00035 1.2E-08 60.2 1.4 26 49-74 22-49 (359)
433 1ypw_A Transitional endoplasmi 96.7 0.00059 2E-08 65.0 2.8 32 41-74 232-263 (806)
434 2cdn_A Adenylate kinase; phosp 96.7 0.00086 2.9E-08 52.5 3.4 24 49-72 20-43 (201)
435 2pbr_A DTMP kinase, thymidylat 96.7 0.0008 2.7E-08 51.8 3.2 23 51-73 2-24 (195)
436 1zd8_A GTP:AMP phosphotransfer 96.7 0.0008 2.7E-08 53.8 3.2 23 49-71 7-29 (227)
437 1zak_A Adenylate kinase; ATP:A 96.7 0.00082 2.8E-08 53.5 3.2 24 49-72 5-28 (222)
438 1e6c_A Shikimate kinase; phosp 96.7 0.00082 2.8E-08 51.0 3.1 23 50-72 3-25 (173)
439 2hf9_A Probable hydrogenase ni 96.7 0.00078 2.7E-08 53.4 3.0 24 50-73 39-62 (226)
440 1qf9_A UMP/CMP kinase, protein 96.7 0.00089 3E-08 51.5 3.2 23 49-71 6-28 (194)
441 2ius_A DNA translocase FTSK; n 96.7 0.00047 1.6E-08 62.3 1.8 34 36-71 156-189 (512)
442 2pt5_A Shikimate kinase, SK; a 96.7 0.00095 3.3E-08 50.4 3.2 22 51-72 2-23 (168)
443 1xjc_A MOBB protein homolog; s 96.7 0.00099 3.4E-08 51.4 3.2 25 50-74 5-29 (169)
444 2vli_A Antibiotic resistance p 96.7 0.00067 2.3E-08 52.0 2.1 24 49-72 5-28 (183)
445 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.7E-08 50.3 3.3 22 50-71 8-29 (168)
446 1ukz_A Uridylate kinase; trans 96.7 0.0012 4.1E-08 51.5 3.6 23 49-71 15-37 (203)
447 3cf0_A Transitional endoplasmi 96.6 0.00075 2.5E-08 56.6 2.4 25 49-73 49-73 (301)
448 3ake_A Cytidylate kinase; CMP 96.6 0.0011 3.8E-08 51.7 3.2 22 51-72 4-25 (208)
449 1f2t_B RAD50 ABC-ATPase; DNA d 96.6 0.0015 5E-08 49.3 3.6 39 160-198 81-123 (148)
450 1sxj_C Activator 1 40 kDa subu 96.6 0.00047 1.6E-08 58.6 1.0 32 41-74 38-71 (340)
451 2vf7_A UVRA2, excinuclease ABC 96.6 0.00095 3.2E-08 63.7 3.2 32 34-67 23-54 (842)
452 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0013 4.5E-08 53.9 3.5 24 49-72 4-27 (260)
453 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4.2E-08 52.7 3.2 21 51-71 2-22 (223)
454 3tlx_A Adenylate kinase 2; str 96.6 0.0015 5E-08 53.1 3.6 23 49-71 29-51 (243)
455 1e4v_A Adenylate kinase; trans 96.6 0.0012 4.1E-08 52.3 3.0 21 51-71 2-22 (214)
456 2zr9_A Protein RECA, recombina 96.5 0.00089 3E-08 57.6 2.3 29 44-74 58-86 (349)
457 3umf_A Adenylate kinase; rossm 96.5 0.0014 4.9E-08 52.6 3.3 25 49-73 29-53 (217)
458 3be4_A Adenylate kinase; malar 96.5 0.0015 5.2E-08 51.8 3.3 24 49-72 5-28 (217)
459 2grj_A Dephospho-COA kinase; T 96.5 0.0015 5.3E-08 51.3 3.2 24 49-72 12-35 (192)
460 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 51.8 3.2 23 51-73 2-24 (206)
461 1uj2_A Uridine-cytidine kinase 96.4 0.0016 5.5E-08 53.0 3.2 24 49-72 22-45 (252)
462 3pih_A Uvrabc system protein A 96.4 0.0015 5.1E-08 62.9 3.2 30 35-66 12-41 (916)
463 3bos_A Putative DNA replicatio 96.4 0.0019 6.4E-08 51.2 3.4 25 49-73 52-76 (242)
464 4ag6_A VIRB4 ATPase, type IV s 96.4 0.0012 4.1E-08 57.3 2.3 26 49-74 35-60 (392)
465 1jbk_A CLPB protein; beta barr 96.4 0.0021 7.1E-08 48.8 3.4 25 49-73 43-67 (195)
466 2f6r_A COA synthase, bifunctio 96.3 0.0018 6.2E-08 53.8 3.0 23 49-71 75-97 (281)
467 2ygr_A Uvrabc system protein A 96.3 0.0016 5.5E-08 62.9 3.0 31 34-66 33-63 (993)
468 1ak2_A Adenylate kinase isoenz 96.3 0.0024 8.3E-08 51.2 3.6 24 49-72 16-39 (233)
469 2r6f_A Excinuclease ABC subuni 96.3 0.0017 5.7E-08 62.7 3.0 31 34-66 31-61 (972)
470 2qby_A CDC6 homolog 1, cell di 96.3 0.0019 6.4E-08 54.9 2.8 26 49-74 45-70 (386)
471 1ltq_A Polynucleotide kinase; 96.2 0.0024 8.2E-08 53.0 3.2 22 50-71 3-24 (301)
472 2w58_A DNAI, primosome compone 96.2 0.0027 9.1E-08 49.5 3.3 25 50-74 55-79 (202)
473 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0032 1.1E-07 50.9 3.7 24 50-73 40-63 (262)
474 3b9p_A CG5977-PA, isoform A; A 96.2 0.0023 7.9E-08 53.0 2.7 25 49-73 54-78 (297)
475 1fnn_A CDC6P, cell division co 96.2 0.0026 8.8E-08 54.4 3.1 25 51-75 46-70 (389)
476 1sky_E F1-ATPase, F1-ATP synth 96.2 0.0031 1.1E-07 56.2 3.7 29 43-73 147-175 (473)
477 2qmh_A HPR kinase/phosphorylas 96.1 0.0035 1.2E-07 49.7 3.4 25 49-73 34-58 (205)
478 2r6a_A DNAB helicase, replicat 96.1 0.0027 9.1E-08 56.4 3.0 31 43-75 199-229 (454)
479 1a7j_A Phosphoribulokinase; tr 96.1 0.0017 5.7E-08 54.4 1.5 24 49-72 5-28 (290)
480 4edh_A DTMP kinase, thymidylat 96.0 0.0042 1.4E-07 49.5 3.6 26 49-74 6-31 (213)
481 2p65_A Hypothetical protein PF 96.0 0.0031 1.1E-07 47.7 2.7 25 49-73 43-67 (187)
482 1v5w_A DMC1, meiotic recombina 96.0 0.0042 1.4E-07 53.1 3.7 27 44-72 119-145 (343)
483 3zvl_A Bifunctional polynucleo 96.0 0.0045 1.5E-07 54.3 3.9 24 49-72 258-281 (416)
484 3h4m_A Proteasome-activating n 96.0 0.0036 1.2E-07 51.4 3.2 26 49-74 51-76 (285)
485 3llm_A ATP-dependent RNA helic 96.0 0.0035 1.2E-07 50.4 2.8 23 49-71 76-98 (235)
486 2ocp_A DGK, deoxyguanosine kin 96.0 0.0045 1.5E-07 49.8 3.4 25 49-73 2-26 (241)
487 1njg_A DNA polymerase III subu 95.9 0.0042 1.4E-07 48.7 3.2 23 51-73 47-69 (250)
488 3v9p_A DTMP kinase, thymidylat 95.9 0.0038 1.3E-07 50.4 2.8 26 49-74 25-50 (227)
489 2h92_A Cytidylate kinase; ross 95.9 0.0045 1.6E-07 48.8 3.2 24 49-72 3-26 (219)
490 1l8q_A Chromosomal replication 95.9 0.0033 1.1E-07 52.8 2.5 26 49-74 37-62 (324)
491 3d3q_A TRNA delta(2)-isopenten 95.9 0.0044 1.5E-07 53.1 3.2 24 50-73 8-31 (340)
492 3kta_B Chromosome segregation 95.9 0.006 2.1E-07 47.1 3.7 38 160-197 86-126 (173)
493 4fcw_A Chaperone protein CLPB; 95.9 0.0036 1.2E-07 52.0 2.5 25 50-74 48-72 (311)
494 3lv8_A DTMP kinase, thymidylat 95.8 0.0052 1.8E-07 49.9 3.3 26 49-74 27-52 (236)
495 1p5z_B DCK, deoxycytidine kina 95.8 0.0039 1.3E-07 50.9 2.6 25 49-73 24-48 (263)
496 4ido_A Atlastin-1; GTPase, GTP 95.8 0.0088 3E-07 53.1 4.9 60 50-109 68-153 (457)
497 3exa_A TRNA delta(2)-isopenten 95.8 0.0059 2E-07 51.8 3.6 53 49-103 3-65 (322)
498 2z43_A DNA repair and recombin 95.8 0.0054 1.8E-07 51.9 3.4 27 44-72 104-130 (324)
499 2r62_A Cell division protease 95.8 0.00064 2.2E-08 55.5 -2.3 22 52-73 47-68 (268)
500 3crm_A TRNA delta(2)-isopenten 95.8 0.0051 1.8E-07 52.3 3.2 24 50-73 6-29 (323)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-34 Score=251.98 Aligned_cols=225 Identities=69% Similarity=1.089 Sum_probs=186.9
Q ss_pred CcccccchhhHHHHHHHHHHHHHHHHhhhccCCCC--CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccc
Q psy2924 1 MARTQKNKATAGHLGLLKARIAKLRRELITPKGGG--GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAA 78 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~ 78 (225)
|||+|||||||+|+.|+|++|+++|+++...+.+. ++.+..|+|.++|-..|||||.||||||||||+|+|....+++
T Consensus 22 ~~~~~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~ 101 (376)
T 4a9a_A 22 MARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAE 101 (376)
T ss_dssp HHHSCCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGG
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccC
Confidence 68999999999999999999999999998766533 4567899999988889999999999999999999999888999
Q ss_pred cccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccC
Q psy2924 79 YEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLN 158 (225)
Q Consensus 79 ~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~ 158 (225)
|||||++|..|.+.+.|.+++++|+||+...+..+.++..+++..++.+|++++++|...+..+.+.+...|+.+++.+.
T Consensus 102 ~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~ 181 (376)
T 4a9a_A 102 YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLN 181 (376)
T ss_dssp TCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEET
T ss_pred CCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhc
Confidence 99999999999999999999999999999887778888899999999999999999998876667778888888888766
Q ss_pred CCCCccc------------ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHh-ccccccceEEeccCCCC
Q psy2924 159 KEPPNID------------NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVE-GNRIYVPCIYLLNKIGE 225 (225)
Q Consensus 159 ~~~~~ls------------lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 225 (225)
+.+..+. ...+...++.+..+.++..+.-....+++..+.+.+++.+... ....+.|++++.||+|+
T Consensus 182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~ 261 (376)
T 4a9a_A 182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDS 261 (376)
T ss_dssp CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGG
T ss_pred cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccc
Confidence 6655443 2345567888888888887765566677777888899888774 46678999999999873
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.89 E-value=9.9e-25 Score=189.66 Aligned_cols=176 Identities=15% Similarity=0.087 Sum_probs=124.2
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+++.+..+.+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|+++...+. ..
T Consensus 11 s~~y~~~~~L~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~i~~~~~--~~ 75 (359)
T 3fvq_A 11 SKSFQNTPVLNDISLSLDP--GEILFIIGASGCGKTTLLRCLAGFEQP-----------DSGEISLSGKTIFSKNT--NL 75 (359)
T ss_dssp EEEETTEEEEEEEEEEECT--TCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEESSSC--BC
T ss_pred EEEECCEEEEEeeEEEEcC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEECccccc--cc
Confidence 3456566678899999999 999999999999999999999999999 99999999998742111 11
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEEeeC-----CCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIVLDV-----LKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-----~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
...++.+++++|...++++.++..++... ....+..+.+.++++.+++. .++.+..||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 12234566766654444444332221111 11223346788899999983 666777777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++ +.+ ++..+|..+++..++|...++..+.++
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~t-vi~vTHd~~ea~~~aDri~vl~~G~i~ 218 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKS-AVFVSHDREEALQYADRIAVMKQGRIL 218 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCE-EEEECCCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHCCEEEEEECCEEE
Confidence 99999999999988887765543 334 334566678888888877777665554
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.88 E-value=1.7e-24 Score=189.45 Aligned_cols=172 Identities=17% Similarity=0.093 Sum_probs=123.4
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+++.+..+.+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|+++....
T Consensus 11 ~~yg~~~~L~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~~~~~~------ 71 (381)
T 3rlf_A 11 KAWGEVVVSKDINLDIHE--GEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMNDTP------ 71 (381)
T ss_dssp EEETTEEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTCC------
T ss_pred EEECCEEEEeeeEEEECC--CCEEEEEcCCCchHHHHHHHHHcCCCC-----------CCeEEEECCEECCCCC------
Confidence 455556678899999999 999999999999999999999999998 9999999998764211
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEe---e--CCCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVL---D--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~---d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
.....+++++|...++++.++..++. . .....+..+.+.++++.+++. +++.+..||
T Consensus 72 ~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 12234566666544443333221111 0 112223356788899999993 667777788
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcCC---eEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHNA---DITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~~---~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.++++.. ..++..+|..+++..++|...++..+.++
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (381)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999998888877632 23333566678888888887777665554
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.88 E-value=6.9e-24 Score=184.28 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=120.3
Q ss_pred hcc-CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 29 ITP-KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 29 ~~~-~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
+.+ .++...+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.. .+
T Consensus 22 ~~y~g~~~vl~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~--~~--- 83 (355)
T 1z47_A 22 KIYPGGARSVRGVSFQIRE--GEMVGLLGPSGSGKTTILRLIAGLERP-----------TKGDVWIGGKRVTD--LP--- 83 (355)
T ss_dssp ECCTTSTTCEEEEEEEEET--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--CC---
T ss_pred EEEcCCCEEEeeeEEEECC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECCc--CC---
Confidence 455 455678899999999 999999999999999999999999998 99999999987531 11
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
..++.+++++|...+++..++..++ .. .....+..+.+.++++.+++. .++.+..||
T Consensus 84 -~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 84 -PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp -GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred -hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 1233455655544333333321111 00 111122345688899999983 566677777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.++++. ...++..+|..+++..+++...++..+.++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887653 123333556678888888877766555543
No 5
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=9.8e-24 Score=184.45 Aligned_cols=171 Identities=15% Similarity=0.106 Sum_probs=118.9
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.. .+
T Consensus 19 ~~y~~~~vl~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~--~~---- 79 (372)
T 1v43_A 19 KRFGNFTAVNKLNLTIKD--GEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVTY--LP---- 79 (372)
T ss_dssp EEETTEEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----
T ss_pred EEECCEEEEeeeEEEECC--CCEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECCC--CC----
Confidence 345444577899999999 999999999999999999999999998 99999999987631 11
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeC-----CCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDV-----LKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~-----~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
..++.+++++|...++++.++..++.-. ....+..+.+.++++.+++. .++.+..||
T Consensus 80 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 80 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 1234567777766566554442221111 11122345688899999983 667777888
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.++++. .+ ++..+|..+++..++|..+++..+.++
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887653 33 333455577777777777666555543
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.87 E-value=1.5e-24 Score=181.56 Aligned_cols=181 Identities=14% Similarity=0.073 Sum_probs=114.2
Q ss_pred HHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC
Q psy2924 24 LRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL 103 (225)
Q Consensus 24 ~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~ 103 (225)
++.....+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++. .+.
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~~--Gei~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~-~~~ 92 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIRE--GEVVVVIGPSGSGKSTFLRCLNLLEDF-----------DEGEIIIDGINLK-AKD 92 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEESS-STT
T ss_pred EEeEEEEECCEEEEEeeEEEEcC--CCEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEECC-Ccc
Confidence 33333455555678899999999 999999999999999999999999998 9999999997653 110
Q ss_pred CCCCCCccCCcchHHHHHHHHhCCCeEEEE------eeCCCccccHHHHHHHHHhcccc--cCCCCCccc----------
Q psy2924 104 PGIIEGAKDGKGRGRQVIAVARTCSLIFIV------LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------- 165 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------- 165 (225)
... ...+..+++++|....+...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 93 ~~~-~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 93 TNL-NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp CCH-HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ccH-HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 000 00000111111110000000100000 00111122245677889999883 455666677
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++. ...++..+|.++.+...++..++...+.++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887652 223344556678877788877776655554
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.87 E-value=1.4e-24 Score=188.92 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=115.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
+.+++||+|++ |++++|+||||||||||+++|+|+..| ++|.|.++|+++...+.... ...+..++
T Consensus 43 aL~~vsl~i~~--Gei~~IiGpnGaGKSTLlr~i~GL~~p-----------~~G~I~i~G~~i~~~~~~~~-~~~r~~Ig 108 (366)
T 3tui_C 43 ALNNVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESEL-TKARRQIG 108 (366)
T ss_dssp EEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECSSCCHHHH-HHHHTTEE
T ss_pred EEEeeEEEEcC--CCEEEEEcCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHH-HHHhCcEE
Confidence 68899999999 999999999999999999999999999 99999999987642211000 00112334
Q ss_pred hHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 116 RGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
+++|...++...++...+ . ......+..+.+.++++.+|+. .++.+..|| +|
T Consensus 109 ~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD 188 (366)
T 3tui_C 109 MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 188 (366)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 433322222111111000 0 0112223345688899999983 566777788 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEec
Q psy2924 168 VPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYLL 220 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
|||++||+..+..+++.++++. .+| +..+|.++.+..+++...++..+.++.
T Consensus 189 EPTs~LD~~~~~~i~~lL~~l~~~~g~Ti-i~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 189 QATSALDPATTRSILELLKDINRRLGLTI-LLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEE-EEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEE-EEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999988763 333 334556777778888877776666543
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.87 E-value=7.5e-25 Score=180.66 Aligned_cols=169 Identities=16% Similarity=0.105 Sum_probs=103.9
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+........+..++
T Consensus 20 ~L~~isl~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 86 (235)
T 3tif_A 20 ALKNVNLNIKE--GEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIG 86 (235)
T ss_dssp EEEEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEE
T ss_pred eEEeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHHHHHhhccEE
Confidence 67899999999 999999999999999999999999998 99999999976531110000000000112
Q ss_pred hHHHHHHHHhCCCeEEEE---e-----eCCCccccHHHHHHHHHhcccc---cCCCCCccc-------------------
Q psy2924 116 RGRQVIAVARTCSLIFIV---L-----DVLKPLGHKKLIEHELEGFGLR---LNKEPPNID------------------- 165 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~---~-----d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls------------------- 165 (225)
+++|....+...++...+ . ......+..+.+.++++.+++. .++.+..||
T Consensus 87 ~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~l 166 (235)
T 3tif_A 87 FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPI 166 (235)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 211211111111110000 0 0111122345677888888883 256666777
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.+.++. .+|+ ..+|.++ +...++..+++..+.++
T Consensus 167 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi-~vtHd~~-~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 167 ILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV-VVTHDIN-VARFGERIIYLKDGEVE 224 (235)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE-EECSCHH-HHTTSSEEEEEETTEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEE-EEcCCHH-HHHhCCEEEEEECCEEE
Confidence 999999999999999999887762 3433 2334444 34556666555554443
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.87 E-value=6.7e-24 Score=185.62 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=117.8
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe----CC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD----LP 104 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d----~~ 104 (225)
+.+.++...+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.... .+
T Consensus 11 ~~y~~~~vl~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~~~~~~~~ 77 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKD--GEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPEKGIFVP 77 (372)
T ss_dssp EEETTEEEEEEEEEEEET--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGGGTEECC
T ss_pred EEECCEEEEeeeEEEEcC--CCEEEEECCCCcHHHHHHHHHHcCCCC-----------CccEEEECCEECccccccccCC
Confidence 345444577899999999 999999999999999999999999998 9999999999876410 11
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
..++.+++++|...++++.++..++ .. .....+..+.+.++++.+++. .++.+..||
T Consensus 78 ----~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArA 153 (372)
T 1g29_1 78 ----PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRA 153 (372)
T ss_dssp ----GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred ----HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHH
Confidence 1123345544433222222221111 00 111122345678899999983 566677777
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.++++. .++ +..+|..+++..+.|...++..+.++
T Consensus 154 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEE-EEECCCHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999888887653 333 33445567777777777666555443
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.87 E-value=5.1e-25 Score=180.41 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=105.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.......
T Consensus 13 ~y~~~~~l~~vsl~i~~--Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 13 VIRGYEILKGISLSVKK--GEFVSIIGASGSGKSTLLYILGLLDAP-----------TEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EETTEEEEEEEEEEEET--TCEEEEEECTTSCHHHHHHHHTTSSCC-----------SEEEEEETTEECCSSCHHHHHHH
T ss_pred EECCEeeEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHHHHH
Confidence 44445578899999999 999999999999999999999999998 99999999976531110000000
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---e--eCCCccccHHHHHHHHHhcccc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---L--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls----------------- 165 (225)
.+..+++++|....+...++...+ . .........+.+.++++.+++. .++.+..||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 000011111110000000000000 0 0111112235677889998883 455666677
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhc---CCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIH---NADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++ +.+|++ .+|..+.+ ..++..+....+.++
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~-vtHd~~~~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM-VTHERELA-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE-ECSCHHHH-TTSSEEEEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-EcCCHHHH-HhCCEEEEEECCEEE
Confidence 99999999999999998888765 234333 34445544 555655555544443
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.87 E-value=6.8e-24 Score=184.66 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=117.6
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.. .+
T Consensus 11 ~~y~~~~vl~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~--~~---- 71 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKD--GEFVALLGPSGCGKTTTLLMLAGIYKP-----------TSGEIYFDDVLVND--IP---- 71 (359)
T ss_dssp EEETTEEEEEEEEEEECT--TCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----
T ss_pred EEECCEEEEeeeEEEEcC--CCEEEEEcCCCchHHHHHHHHHCCCCC-----------CccEEEECCEECCC--CC----
Confidence 345444567899999999 999999999999999999999999998 99999999987631 11
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE---eeCCC--ccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV---LDVLK--PLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~--~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
..++.+++++|...++++.++..++ ..... ..+..+.+.++++.+++. .++.+..||
T Consensus 72 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 72 PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 1123455554433333332221111 11111 122245688899999983 566677777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+.+.++++. .+ ++..+|..+++..++|...++..+.++
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT-SVYVTHDQAEAMTMASRIAVFNQGKLV 213 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999888887653 33 333455677777777777666555443
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.87 E-value=2.6e-24 Score=179.65 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=107.9
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++++ |++++|+||||||||||+|+|+|+..| ++|.|.++|.++...+. ...
T Consensus 16 ~y~~~~vl~~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~ 79 (257)
T 1g6h_A 16 YFGEFKALDGVSISVNK--GDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEP---AEL 79 (257)
T ss_dssp EETTEEEEEEECCEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHH
T ss_pred EECCEeeEeeeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCH---HHH
Confidence 44455578899999999 999999999999999999999999998 99999999976521100 000
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---eeC---------------CCccccHHHHHHHHHhcccc--cCCCCCccc----
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LDV---------------LKPLGHKKLIEHELEGFGLR--LNKEPPNID---- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d~---------------~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---- 165 (225)
.+..+++++|....+...++...+ ... .......+.+.++++.+++. .++.+..||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHH
Confidence 011223322222122211111000 000 01112245678889999883 455566677
Q ss_pred -----------------ccCCCCCCCHHHHHHHHHHhhhc---CCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----------------NQVPQSELDLDTVKTILSEYRIH---NADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----------------lDEp~~~LD~~~~~~i~~~l~~~---~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+++.+.++ +.+|++ .+|.++.+...++..++...+.+
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~-vtHd~~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI-IEHRLDIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE-ECSCCSTTGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE-EecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999888765 234332 33444444455555555544443
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.87 E-value=9e-24 Score=184.08 Aligned_cols=171 Identities=17% Similarity=0.148 Sum_probs=117.5
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
+.+.++...+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.. .+
T Consensus 11 ~~y~~~~vl~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~--~~---- 71 (362)
T 2it1_A 11 KKFGNFTALNNINLKIKD--GEFMALLGPSGSGKSTLLYTIAGIYKP-----------TSGKIYFDEKDVTE--LP---- 71 (362)
T ss_dssp EESSSSEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----
T ss_pred EEECCEEEEEeeEEEECC--CCEEEEECCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCc--CC----
Confidence 345445577899999999 999999999999999999999999998 99999999987631 11
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE---ee--CCCccccHHHHHHHHHhcccc--cCCCCCccc----------------
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV---LD--VLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------- 165 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~---~d--~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------- 165 (225)
..++.+++++|...++++.++..++ .. .....+..+.+.++++.+++. .++.+..||
T Consensus 72 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 72 PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 1123345554433333322221111 00 111122345688899999983 566666777
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+.+.++++. .++ +..+|..+++..+.|...++..+.++
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv-i~vTHd~~~a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT-VYVTHDQAEALAMADRIAVIREGEIL 213 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE-EEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999988887653 333 33455577777887777766555543
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=9.4e-24 Score=174.57 Aligned_cols=174 Identities=16% Similarity=0.106 Sum_probs=109.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+. ...
T Consensus 15 ~y~~~~vl~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~ 78 (240)
T 1ji0_A 15 YYGAIHAIKGIDLKVPR--GQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKPA---HVI 78 (240)
T ss_dssp EETTEEEEEEEEEEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHH
T ss_pred EECCeeEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCCH---HHH
Confidence 44445578899999999 999999999999999999999999998 99999999976521100 000
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEe--e--CCCccccHHHHHHHHHhcc-cc--cCCCCCccc-----------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVL--D--VLKPLGHKKLIEHELEGFG-LR--LNKEPPNID----------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~--d--~~~~~~~~~~~~~~l~~~~-l~--~~~~~~~ls----------------- 165 (225)
.+..+++++|....+...++...+. . ........+.+.++++.++ +. .++.+..||
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 0111222222111111111100000 0 0011122345677788884 72 455566677
Q ss_pred ----ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887652 222333455567777777777666555543
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.86 E-value=5.5e-24 Score=185.04 Aligned_cols=172 Identities=16% Similarity=0.181 Sum_probs=119.2
Q ss_pred ccCCCC--CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEe---CC
Q psy2924 30 TPKGGG--GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD---LP 104 (225)
Q Consensus 30 ~~~~~~--~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d---~~ 104 (225)
.+.++. ..+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.... .+
T Consensus 12 ~y~~~~~~vl~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 12 VFKKGKVVALDNVNINIEN--GERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp EEGGGTEEEEEEEEEEECT--TCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTEESSC
T ss_pred EECCEeeeeEeceEEEECC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECcccccccCC
Confidence 444444 67899999999 999999999999999999999999998 9999999999875411 11
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEe---eCC--CccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVL---DVL--KPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---d~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
..+..+++++|...++.+.++..++. ... ...+..+.+.++++.+++. .++.+..||
T Consensus 79 ----~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 79 ----PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp ----GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ----hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 12234555555433333333221111 111 1122345688899999983 566677777
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..+..+++.++++. .+ ++..+|..+++..++|...++..+.++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999998888887652 33 333455677777877777666555543
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.86 E-value=2.5e-24 Score=180.23 Aligned_cols=178 Identities=16% Similarity=0.077 Sum_probs=112.3
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE-------
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL------- 101 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~------- 101 (225)
..+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...
T Consensus 14 ~~y~~~~vl~~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~ 80 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARA--GDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQL 80 (262)
T ss_dssp EEETTEEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSE
T ss_pred EEECCEEEEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEccccccccccc
Confidence 345445578899999999 999999999999999999999999998 999999999875310
Q ss_pred -eCCCC-CCCccCCcchHHHHHHHHhCCCeEEEE---e-e--CCCccccHHHHHHHHHhccc--c-cCCCCCccc-----
Q psy2924 102 -DLPGI-IEGAKDGKGRGRQVIAVARTCSLIFIV---L-D--VLKPLGHKKLIEHELEGFGL--R-LNKEPPNID----- 165 (225)
Q Consensus 102 -d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~---~-d--~~~~~~~~~~~~~~l~~~~l--~-~~~~~~~ls----- 165 (225)
+.+.. ....+..+++++|....+...++...+ . . ........+.+.++++.+++ . .++.+..||
T Consensus 81 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp EESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHH
T ss_pred cccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHH
Confidence 00000 000000111111110000000100000 0 0 01112224567788999988 3 566777777
Q ss_pred ----------------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ----------------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ----------------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++. ...++..+|.++.+...++..++...+.++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999998887652 222333556677777777877776655554
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=1.1e-21 Score=165.31 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=106.7
Q ss_pred hccCCCC-CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 29 ITPKGGG-GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 29 ~~~~~~~-~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.++.++. +.+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|+++...... .
T Consensus 15 ~~y~~~~~~L~~isl~i~~--Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----------~~G~I~~~G~~i~~~~~~--~ 79 (275)
T 3gfo_A 15 YNYSDGTHALKGINMNIKR--GEVTAILGGNGVGKSTLFQNFNGILKP-----------SSGRILFDNKPIDYSRKG--I 79 (275)
T ss_dssp EECTTSCEEEEEEEEEEET--TSEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCCSHHH--H
T ss_pred EEECCCCeEEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeEEEECCEECCccccc--H
Confidence 3454433 78999999999 999999999999999999999999998 999999999876310000 0
Q ss_pred CCccCCcchHHHHHH-HHhCCCeEE---EEe--eCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 108 EGAKDGKGRGRQVIA-VARTCSLIF---IVL--DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~~~~~~~l---~~~--d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
...+..+++++|... .+...++.. +.. ......+..+.+.++++.+++. .++.+..||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 000112222222110 000000000 000 0111223345678889999883 455666677
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC----Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN----AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~----~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+++.+.++. .+ |+++|+ ++.+...++..+++..+.+
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd--l~~~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD--IDIVPLYCDNVFVMKEGRV 222 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC--CSSGGGGCSEEEEEETTEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC--HHHHHHhCCEEEEEECCEE
Confidence 999999999999999988887653 33 444554 3344444454444444333
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.85 E-value=9.8e-24 Score=183.02 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=112.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
.+.++ ..+++||++++ |++++|+|||||||||||++|+|+..| ++|.|.++|+++.. .+ .
T Consensus 10 ~y~~~-~l~~vsl~i~~--Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~--~~----~ 69 (348)
T 3d31_A 10 KWKNF-SLDNLSLKVES--GEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVTD--LS----P 69 (348)
T ss_dssp ECSSC-EEEEEEEEECT--TCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----H
T ss_pred EECCE-EEeeeEEEEcC--CCEEEEECCCCccHHHHHHHHHcCCCC-----------CCcEEEECCEECCC--Cc----h
Confidence 45445 78899999999 999999999999999999999999998 99999999986531 11 1
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cCCCCCccc-------------------
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------------- 165 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------------- 165 (225)
.++.+++++|...++++.++..++ ......... +.+.++++.+++. .++.+..||
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l 148 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI 148 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 112334433332222222211000 000000111 5678889999883 566666777
Q ss_pred --ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 --NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 --lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..++.+.+.++++. ...++..+|..+++..+.+...++..+.+
T Consensus 149 LLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 149 LLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp EEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999888887652 12233345566777777777666655444
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=1.1e-23 Score=175.76 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=106.7
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
...+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++.. . .
T Consensus 22 ~~~y~~~~vl~~vsl~i~~--Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~-~----~ 83 (256)
T 1vpl_A 22 RKRIGKKEILKGISFEIEE--GEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVVE-E----P 83 (256)
T ss_dssp EEEETTEEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTT-C----H
T ss_pred EEEECCEEEEEeeEEEEcC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCc-c----H
Confidence 3455555678899999999 999999999999999999999999998 99999999975421 0 0
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE-----eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV-----LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
...+..+++++|....+...++...+ .......+..+.+.++++.+++. .++.+..||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 00011122221111111000000000 00111112234567788888873 455555666
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+++.+.++. ...++..+|.++.+...++..+....+.+
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 224 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEE
Confidence 999999999999999988887652 22233344555666555665555544444
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=1.4e-23 Score=177.11 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=109.1
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE--EEeCCC
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ--LLDLPG 105 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~--~~d~~g 105 (225)
...+.++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++. ..+.
T Consensus 28 ~~~y~~~~vL~~isl~i~~--Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~-- 92 (279)
T 2ihy_A 28 GRMKQGKTILKKISWQIAK--GDKWILYGLNGAGKTTLLNILNAYEPA-----------TSGTVNLFGKMPGKVGYSA-- 92 (279)
T ss_dssp EEEETTEEEEEEEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTBCCC---CCH--
T ss_pred EEEECCEEEEEeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccCCH--
Confidence 3455555678899999999 999999999999999999999999998 9999999998763 1110
Q ss_pred CCCCccCCcchHHHHHHHHhCC--CeEEEEe---------eCCCccccHHHHHHHHHhcccc--cCCCCCccc-------
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTC--SLIFIVL---------DVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------- 165 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~---------d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------- 165 (225)
...+..+++++|....+... ++...+. ......+..+.+.++++.+++. .++.+..||
T Consensus 93 --~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 93 --ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170 (279)
T ss_dssp --HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred --HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH
Confidence 11123455555554321111 2110000 0001122245677889999883 455666677
Q ss_pred --------------ccCCCCCCCHHHHHHHHHHhhhcC---CeE---EEeecCChHHHHHHHhccccccc
Q psy2924 166 --------------NQVPQSELDLDTVKTILSEYRIHN---ADI---TLRYDATSDDLIDVVEGNRIYVP 215 (225)
Q Consensus 166 --------------lDEp~~~LD~~~~~~i~~~l~~~~---~~v---i~~~~~~~~~~~~~~~~~~~~~~ 215 (225)
+||||++||+..++.+++.+.++. .+| +++|+ .+.+...++..+....
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd--~~~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF--IEEITANFSKILLLKD 238 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC--GGGCCTTCCEEEEEET
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC--HHHHHHhCCEEEEEEC
Confidence 999999999999999998887652 334 34443 3444444444444433
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=8.7e-24 Score=177.30 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=107.7
Q ss_pred hccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCC
Q psy2924 29 ITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 29 ~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~ 108 (225)
..+.++...+++||++.+ |++++|+||||||||||+++|+|+.+| ++|.|.++|+++...+..
T Consensus 19 ~~~~~~~vL~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~---- 81 (266)
T 4g1u_C 19 YHVQQQALINDVSLHIAS--GEMVAIIGPNGAGKSTLLRLLTGYLSP-----------SHGECHLLGQNLNSWQPK---- 81 (266)
T ss_dssp EEETTEEEEEEEEEEEET--TCEEEEECCTTSCHHHHHHHHTSSSCC-----------SSCEEEETTEETTTSCHH----
T ss_pred EEeCCeeEEEeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCCHH----
Confidence 345556678899999999 999999999999999999999999998 899999999764211000
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cC---------------------C---
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LN---------------------K--- 159 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~---------------------~--- 159 (225)
..+..+++++|....+...++...+ ..........+.+.++++.+++. .+ .
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 0000000000000000000000000 00001112234566666666652 12 2
Q ss_pred ---CCCcccccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 ---EPPNIDNQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ---~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.|..|.+||||++||+..+..+++.++++. ...++..+|.++.+...++..+++..+.++
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 445566999999999999999999887763 223444666678888888877777665554
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=4.8e-22 Score=164.32 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=107.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ ++++|+||||||||||+++|+|+..| ++|.|.++|.++.. .+ ..+..++
T Consensus 14 ~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~--~~----~~~~~i~ 73 (240)
T 2onk_A 14 FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITP--LP----PERRGIG 73 (240)
T ss_dssp EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----TTTSCCB
T ss_pred EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCc--Cc----hhhCcEE
Confidence 37789999887 49999999999999999999999998 99999999976531 11 1122334
Q ss_pred hHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCC
Q psy2924 116 RGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVP 169 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp 169 (225)
+++|....+...++...+ ..........+.+.++++.+++. .++.+..|| +|||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 433322111111111000 00011111245678889999883 455666677 9999
Q ss_pred CCCCCHHHHHHHHHHhhhcC----CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 170 QSELDLDTVKTILSEYRIHN----ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 170 ~~~LD~~~~~~i~~~l~~~~----~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
|++||+..++.+++.+.++. .+|++ .+|.++.+...++..+....+.++
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999887752 33333 455567777777776666555543
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.83 E-value=1.4e-22 Score=169.98 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=100.0
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++... ..+..+
T Consensus 21 ~vl~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~~~~~-------~~~~~i 80 (266)
T 2yz2_A 21 KALENVSLVINE--GECLLVAGNTGSGKSTLLQIVAGLIEP-----------TSGDVLYDGERKKGY-------EIRRNI 80 (266)
T ss_dssp EEEEEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCHH-------HHGGGE
T ss_pred ceeeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEECchH-------HhhhhE
Confidence 368899999999 999999999999999999999999998 999999999764210 000111
Q ss_pred chHHHHH-HHHhCCCeEEEE---eeC-CCccccHHHHHHHHHhcccc----cCCCCCccc--------------------
Q psy2924 115 GRGRQVI-AVARTCSLIFIV---LDV-LKPLGHKKLIEHELEGFGLR----LNKEPPNID-------------------- 165 (225)
Q Consensus 115 ~~~~~~~-~~~~~~~~~l~~---~d~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~ls-------------------- 165 (225)
++++|.. ..+...++...+ ... .......+.+.++++.+++. .++.+..||
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2211110 000000000000 000 11122345677888888875 455566677
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhc---CCe-EEEeecCChHHHHHHHhccccccce
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIH---NAD-ITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~---~~~-vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
+||||++||+..++.+++.+.++ +.+ |+++|+ .+.+...++..+....+
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd--~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD--IETVINHVDRVVVLEKG 214 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC--CTTTGGGCSEEEEEETT
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC--HHHHHHhCCEEEEEECC
Confidence 99999999999999999888765 234 344444 34444444444444333
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.83 E-value=2e-22 Score=167.48 Aligned_cols=167 Identities=14% Similarity=0.091 Sum_probs=99.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||||||||+++|+|+..| + |.|.++|.++...+.. ..+..+
T Consensus 14 ~vl~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~-G~i~~~g~~~~~~~~~----~~~~~i 75 (249)
T 2qi9_C 14 TRLGPLSGEVRA--GEILHLVGPNGAGKSTLLARMAGMTSG-----------K-GSIQFAGQPLEAWSAT----KLALHR 75 (249)
T ss_dssp TTEEEEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------E-EEEEETTEEGGGSCHH----HHHHHE
T ss_pred EEEeeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------C-eEEEECCEECCcCCHH----HHhceE
Confidence 467899999999 999999999999999999999999998 9 9999999764210000 000001
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCC---------------------CCC-------cc
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNK---------------------EPP-------NI 164 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~---------------------~~~-------~l 164 (225)
++++|....+...++...+.-........+.+.++++.+++. .++ .++ .+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 111110000000000000000000000134566667777662 222 234 56
Q ss_pred cccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 165 DNQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 165 slDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.+||||++||+..++.+++.+.++. ...++..+|..+.+...++..+....+.++
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 6999999999999999999887762 223334556677777777766666554443
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=2.4e-23 Score=169.36 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=92.4
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE-------EEEe
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI-------QLLD 102 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i-------~~~d 102 (225)
.+.+ ...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++ .++.
T Consensus 19 ~y~~-~il~~vsl~i~~--Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEK--GNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp ESSS-EEEEEEEEEEET--TCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGGGGGEEEEC
T ss_pred EeCC-eEEeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEhhhhcCcEEEEe
Confidence 4444 578899999999 999999999999999999999999998 899999999764 2221
Q ss_pred C-CCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc-cCCCCCccc---------------
Q psy2924 103 L-PGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR-LNKEPPNID--------------- 165 (225)
Q Consensus 103 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ls--------------- 165 (225)
. +.+. ... -+.+........ ... ... .+.+.++++.+++. .++.+..||
T Consensus 85 q~~~~~----~~~-tv~enl~~~~~~-------~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 85 EEIIVP----RKI-SVEDYLKAVASL-------YGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp SSCCCC----TTS-BHHHHHHHHHHH-------TTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTS
T ss_pred CCCcCC----CCC-CHHHHHHHHHHh-------cCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHh
Confidence 1 1110 000 111211111000 000 111 44567778888773 244444566
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeec
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYD 197 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~ 197 (225)
+||||++||+..+..+++.+.++. .+ ++++|+
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999999999998888887653 33 445554
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.82 E-value=7.1e-23 Score=170.29 Aligned_cols=170 Identities=19% Similarity=0.119 Sum_probs=100.3
Q ss_pred ccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCC--CccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 30 TPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV--YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 30 ~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~--~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.+.++...+++||++++ |++++|+||||||||||+++|+|+ ..| ++|.|.++|.++...+..
T Consensus 12 ~y~~~~vl~~vsl~i~~--Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~~~~~~~~--- 75 (250)
T 2d2e_A 12 SIDGETILKGVNLVVPK--GEVHALMGPNGAGKSTLGKILAGDPEYTV-----------ERGEILLDGENILELSPD--- 75 (250)
T ss_dssp EETTEEEEEEEEEEEET--TCEEEEECSTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEECTTSCHH---
T ss_pred EECCEEEEeceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEECCCCCHH---
Confidence 44445578899999999 999999999999999999999998 667 899999999765311100
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEE------eeC--CCccccHHHHHHHHHhccc-c--cCCCCCc-cc----------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIV------LDV--LKPLGHKKLIEHELEGFGL-R--LNKEPPN-ID---------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~d~--~~~~~~~~~~~~~l~~~~l-~--~~~~~~~-ls---------- 165 (225)
...+..+++++|....+...++..++ ... ....+..+.+.++++.+++ . .++.+.. ||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 00001111111111011000000000 000 0111223457788888888 2 4566666 88
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHH-HhccccccceE
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDV-VEGNRIYVPCI 217 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~-~~~~~~~~~~~ 217 (225)
+||||++||+..++.+++.+.++. .+ |+++|+ .+.+... ++..++...+.
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd--~~~~~~~~~d~v~~l~~G~ 221 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY--QRILNYIQPDKVHVMMDGR 221 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS--SGGGGTSCCSEEEEEETTE
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC--HHHHHHhcCCEEEEEECCE
Confidence 999999999999999999988763 23 444444 3443333 24444443333
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.82 E-value=8.4e-22 Score=164.09 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=104.5
Q ss_pred ccC-CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeC-CCCC
Q psy2924 30 TPK-GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDL-PGII 107 (225)
Q Consensus 30 ~~~-~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~-~g~~ 107 (225)
.+. ++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.+. ..+.++.. +.+.
T Consensus 13 ~y~~~~~vl~~isl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~-~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 13 YYQAENFLFQQLNFDLNK--GDILAVLGQNGCGKSTLLDLLLGIHRP-----------IQGKIEVY-QSIGFVPQFFSSP 78 (253)
T ss_dssp EETTTTEEEEEEEEEEET--TCEEEEECCSSSSHHHHHHHHTTSSCC-----------SEEEEEEC-SCEEEECSCCCCS
T ss_pred EeCCCCeEEEEEEEEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEe-ccEEEEcCCCccC
Confidence 344 44578899999999 999999999999999999999999998 89999743 23444321 1111
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc--------------------
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID-------------------- 165 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------------- 165 (225)
. . .-+.+.......... -..........+.+.++++.+++. .++.+..||
T Consensus 79 ~----~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 79 F----A-YSVLDIVLMGRSTHI---NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp S----C-CBHHHHHHGGGGGGS---CTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred C----C-CCHHHHHHHhhhhhc---ccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1 0 112222221110000 000001122245677888888883 455555666
Q ss_pred -ccCCCCCCCHHHHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccccce
Q psy2924 166 -NQVPQSELDLDTVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIYVPC 216 (225)
Q Consensus 166 -lDEp~~~LD~~~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~~~~ 216 (225)
+||||++||+..+..+++.+.++. ...++..+|..+.+...++..+....+
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G 205 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ 205 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 999999999999999998887652 222333455567776777766555433
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.81 E-value=4.9e-22 Score=164.50 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=101.4
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++...+.. ..+.
T Consensus 14 ~~~vl~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~----~~~~ 76 (243)
T 1mv5_A 14 SEQILRDISFEAQP--NSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPIDNISLE----NWRS 76 (243)
T ss_dssp SSCSEEEEEEEECT--TEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEESTTTSCS----CCTT
T ss_pred CCceEEEeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHH----HHHh
Confidence 35578899999999 999999999999999999999999998 899999999765321111 1122
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCC----CccccHHHHHHHHHhcccc--cC-----------CCCCccc----------
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVL----KPLGHKKLIEHELEGFGLR--LN-----------KEPPNID---------- 165 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~~~~l~~~~l~--~~-----------~~~~~ls---------- 165 (225)
.+++++|....+. ..+.+.. ......+.+.++++.+++. .+ +.+..||
T Consensus 77 ~i~~v~q~~~l~~-----~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 77 QIGFVSQDSAIMA-----GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp TCCEECCSSCCCC-----EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred hEEEEcCCCcccc-----ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 3344333221110 0111110 1111234456666666652 11 2233555
Q ss_pred -----------ccCCCCCCCHHHHHHHHHHhhhc--CCeEEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 -----------NQVPQSELDLDTVKTILSEYRIH--NADITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 -----------lDEp~~~LD~~~~~~i~~~l~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+..++.+++.+.++ +.+|++ .+|..+.+ ..++..+....+.++
T Consensus 152 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~-vtH~~~~~-~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 152 RAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV-IAHRLSTI-VDADKIYFIEKGQIT 216 (243)
T ss_dssp HHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEE-ECCSHHHH-HHCSEEEEEETTEEC
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEE-EeCChHHH-HhCCEEEEEECCEEE
Confidence 99999999998888877777664 334333 34445544 346666665555543
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.81 E-value=1.6e-22 Score=169.68 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=93.3
Q ss_pred HHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEE
Q psy2924 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 23 ~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
+++.....+.++...+++||++++ |++++|+||||||||||+++|+|+. .| ++|.|.++|.++..
T Consensus 22 ~~~~l~~~y~~~~vl~~vsl~i~~--Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 22 SIKDLHVSVEDKAILRGLSLDVHP--GEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLA 88 (267)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECT--TCEEEEECCTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEEGGG
T ss_pred EEEeEEEEECCEEEEEeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CCeEEEECCEECCc
Confidence 333334455555678899999999 9999999999999999999999994 46 89999999976421
Q ss_pred EeCCCCCCCccCCcch------------HHHHHHH-HhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCC-c
Q psy2924 101 LDLPGIIEGAKDGKGR------------GRQVIAV-ARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPP-N 163 (225)
Q Consensus 101 ~d~~g~~~~~~~~~~~------------~~~~~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~-~ 163 (225)
.+... ..+..+++ +.+.... ....... .........+..+.+.++++.+++. .++.+. .
T Consensus 89 ~~~~~---~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 164 (267)
T 2zu0_C 89 LSPED---RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY-RGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 164 (267)
T ss_dssp SCHHH---HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHG-GGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTT
T ss_pred CCHHH---HhhCCEEEEccCccccccccHHHHHHHHHHhhhhh-hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 10000 00000111 1111110 0000000 0000001112234677889999883 344554 4
Q ss_pred cc---------------------ccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 164 ID---------------------NQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 164 ls---------------------lDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
|| +||||++||+..++.+++.+.++.
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 88 999999999999999999998763
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.81 E-value=7.7e-22 Score=165.87 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=48.4
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
+...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++
T Consensus 32 ~~vl~~vsl~i~~--Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i 83 (271)
T 2ixe_A 32 VQVLQGLTFTLYP--GKVTALVGPNGSGKSTVAALLQNLYQP-----------TGGKVLLDGEPL 83 (271)
T ss_dssp SCCEEEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEG
T ss_pred ceeeEeeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEc
Confidence 4578899999999 999999999999999999999999998 899999999764
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.80 E-value=5.3e-22 Score=164.72 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=48.2
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
+...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.++
T Consensus 22 ~~vl~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~i~g~~~ 73 (247)
T 2ff7_A 22 PVILDNINLSIKQ--GEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDL 73 (247)
T ss_dssp CEEEEEEEEEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEET
T ss_pred cceeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEh
Confidence 4478899999999 999999999999999999999999998 899999999764
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.79 E-value=2.6e-21 Score=161.95 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=99.0
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||+++ |++++|+||||||||||+++|+|+. | ++|.|.++|.++... .. +..
T Consensus 18 ~~il~~vsl~i~---Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----------~~G~I~~~g~~~~~~------~~-~~~ 75 (263)
T 2pjz_A 18 RFSLENINLEVN---GEKVIILGPNGSGKTTLLRAISGLL-P-----------YSGNIFINGMEVRKI------RN-YIR 75 (263)
T ss_dssp EEEEEEEEEEEC---SSEEEEECCTTSSHHHHHHHHTTSS-C-----------CEEEEEETTEEGGGC------SC-CTT
T ss_pred ceeEEeeeEEEC---CEEEEEECCCCCCHHHHHHHHhCCC-C-----------CCcEEEECCEECcch------HH-hhh
Confidence 346778888887 5799999999999999999999999 9 999999999764210 01 122
Q ss_pred cc-hHHHHHHHHhCCCeEEEE---eeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------
Q psy2924 114 KG-RGRQVIAVARTCSLIFIV---LDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID--------------------- 165 (225)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~l~~---~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls--------------------- 165 (225)
++ +++|.... ..++...+ .... ....+.+.++++.+++. .++++..||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 33 33332111 11110000 0000 11245577788888874 455566676
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHh-ccccccc
Q psy2924 166 NQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVE-GNRIYVP 215 (225)
Q Consensus 166 lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~ 215 (225)
+||||++||+..++.+++.+.++..+|+ ..+|..+.+...++ ..+....
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~tvi-ivtHd~~~~~~~~d~~i~~l~~ 201 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGKEGI-LVTHELDMLNLYKEYKAYFLVG 201 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCSEEE-EEESCGGGGGGCTTSEEEEEET
T ss_pred EECCccccCHHHHHHHHHHHHHhcCcEE-EEEcCHHHHHHhcCceEEEEEC
Confidence 9999999999999999999988765533 23344444444455 4444433
No 33
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.77 E-value=1.4e-19 Score=166.95 Aligned_cols=165 Identities=12% Similarity=0.130 Sum_probs=103.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
+...+++||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++...+.. ..+..
T Consensus 356 ~~~l~~i~l~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~ 418 (582)
T 3b5x_A 356 KPALSHVSFSIPQ--GKTVALVGRSGSGKSTIANLFTRFYDV-----------DSGSICLDGHDVRDYKLT----NLRRH 418 (582)
T ss_pred ccccccceEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEhhhCCHH----HHhcC
Confidence 3478899999999 999999999999999999999999998 999999999877533211 11233
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cC--------------------------------C
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LN--------------------------------K 159 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~--------------------------------~ 159 (225)
+++++|....+.. ++..++.-+..+....+.+.++++.+++. .+ +
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 419 FALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred eEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 4555554333321 11111100110111234455555555541 11 2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.++.+.+||||++||+...+.+.+.+.++. .+ ++++|+ .+.+ ..+|..++...+.++
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~--~~~~-~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR--LSTI-EQADEILVVDEGEII 557 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC--HHHH-HhCCEEEEEECCEEE
Confidence 223333999999999999999999887763 33 445554 3433 346666666555554
No 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.77 E-value=3.4e-21 Score=164.39 Aligned_cols=52 Identities=31% Similarity=0.479 Sum_probs=47.9
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+++||+|++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 68 ~vL~~isl~i~~--Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 68 ETLQDVSFTVMP--GQTLALVGPSGAGKSTILRLLFRFYDI-----------SSGCIRIDGQDIS 119 (306)
T ss_dssp EEEEEEEEEECT--TCEEEEESSSCHHHHHHHHHHTTSSCC-----------SEEEEEETTEETT
T ss_pred ceeeeeeEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCC-----------CCcEEEECCEEcc
Confidence 356789999999 999999999999999999999999998 9999999998653
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.75 E-value=1e-20 Score=166.36 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=104.1
Q ss_pred hhcc--CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCC
Q psy2924 28 LITP--KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105 (225)
Q Consensus 28 ~~~~--~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g 105 (225)
.+++ .+..+.+++||+|++ |++++|+|||||||||||++|+|+.. ++|.|.++|+++...+.
T Consensus 26 ~~~y~~~~~~~L~~vsl~i~~--Ge~~~llGpsGsGKSTLLr~iaGl~~------------~~G~I~i~G~~i~~~~~-- 89 (390)
T 3gd7_A 26 TAKYTEGGNAILENISFSISP--GQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGEIQIDGVSWDSITL-- 89 (390)
T ss_dssp EEESSSSSCCSEEEEEEEECT--TCEEEEEESTTSSHHHHHHHHHTCSE------------EEEEEEESSCBTTSSCH--
T ss_pred EEEecCCCeEEeeceeEEEcC--CCEEEEECCCCChHHHHHHHHhCCCC------------CCeEEEECCEECCcCCh--
Confidence 3455 345688999999999 99999999999999999999999974 57999999987532110
Q ss_pred CCCCccCCcchHHHHHHHHhCCCeEEEEeeCC--CccccHHHHHHHHHhcccc--cCCCCCc-----------cc-----
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTCSLIFIVLDVL--KPLGHKKLIEHELEGFGLR--LNKEPPN-----------ID----- 165 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~-----------ls----- 165 (225)
...+..+++++|...++. ..+.++. ......+.+.++++.+++. .++.+.. ||
T Consensus 90 --~~~rr~ig~v~Q~~~lf~-----~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 90 --EQWRKAFGVIPQKVFIFS-----GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp --HHHHHTEEEESCCCCCCS-----EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred --HHHhCCEEEEcCCcccCc-----cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHH
Confidence 001122333333211110 1111111 1112345677788888872 4555554 66
Q ss_pred ----------------ccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 ----------------NQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 ----------------lDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+..+..+++.++++. .+ |+++|+ .+. +..+|..+++..+.+
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd--~e~-~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR--IEA-MLECDQFLVIEENKV 231 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS--SGG-GTTCSEEEEEETTEE
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC--HHH-HHhCCEEEEEECCEE
Confidence 999999999999999999988753 23 444454 232 233555444444433
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.75 E-value=3.6e-20 Score=154.80 Aligned_cols=50 Identities=26% Similarity=0.340 Sum_probs=45.4
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
...+++||++++ |++++|+||||||||||+++|+|++.+ +|.|.++|.++
T Consensus 34 ~vl~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------------~G~I~i~g~~i 83 (260)
T 2ghi_A 34 RTLKSINFFIPS--GTTCALVGHTGSGKSTIAKLLYRFYDA------------EGDIKIGGKNV 83 (260)
T ss_dssp CSEEEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTSSCC------------EEEEEETTEEG
T ss_pred ceeEeeEEEECC--CCEEEEECCCCCCHHHHHHHHhccCCC------------CeEEEECCEEh
Confidence 478899999999 999999999999999999999999854 59999999765
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.75 E-value=2.1e-17 Score=135.51 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=47.0
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
+...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|.
T Consensus 21 ~~il~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~ 70 (229)
T 2pze_A 21 TPVLKDINFKIER--GQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR 70 (229)
T ss_dssp CCSEEEEEEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEECSC
T ss_pred ceeeeeeEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CccEEEECCE
Confidence 4578899999999 999999999999999999999999998 9999999984
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=139.30 Aligned_cols=54 Identities=30% Similarity=0.423 Sum_probs=48.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
+...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|. +.++
T Consensus 18 ~~vl~~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~-i~~v 71 (237)
T 2cbz_A 18 PPTLNGITFSIPE--GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVAIKGS-VAYV 71 (237)
T ss_dssp CCSEEEEEEEECT--TCEEEEECSTTSSHHHHHHHHTTCSEE-----------EEEEEEECSC-EEEE
T ss_pred CceeeeeEEEECC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCE-EEEE
Confidence 4578899999999 999999999999999999999999998 8999999984 4433
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.73 E-value=5.4e-19 Score=149.79 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=49.2
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEE
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLL 101 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~ 101 (225)
++...+++||++++ |++++|+||||||||||+++|+|+..| ++|.|.++|. +.++
T Consensus 50 ~~~vl~~isl~i~~--Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~-i~~v 104 (290)
T 2bbs_A 50 GTPVLKDINFKIER--GQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-ISFC 104 (290)
T ss_dssp CCCSEEEEEEEECT--TCEEEEEESTTSSHHHHHHHHTTSSCE-----------EEEEEECCSC-EEEE
T ss_pred CceEEEeeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCE-EEEE
Confidence 45688999999999 999999999999999999999999998 8999999884 4433
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.71 E-value=1.5e-19 Score=166.63 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=94.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 114 (225)
...+++||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++...+.. ..+..+
T Consensus 357 ~~l~~v~~~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~i 419 (582)
T 3b60_A 357 PALRNINLKIPA--GKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLA----SLRNQV 419 (582)
T ss_dssp CSEEEEEEEECT--TCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHH----HHHHTE
T ss_pred ccccceeEEEcC--CCEEEEECCCCCCHHHHHHHHhhccCC-----------CCCeEEECCEEccccCHH----HHHhhC
Confidence 356788999999 999999999999999999999999998 999999999765321100 001112
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc-------------cCCCCCccc----------------
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR-------------LNKEPPNID---------------- 165 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~-------------~~~~~~~ls---------------- 165 (225)
++++|....+. .++..++.-+..+....+.+.++++.+++. .......||
T Consensus 420 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 420 ALVSQNVHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred eEEccCCcCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 22222111110 000000000000111234455555555441 111223444
Q ss_pred -----ccCCCCCCCHHHHHHHHHHhhhc--CCe-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 166 -----NQVPQSELDLDTVKTILSEYRIH--NAD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 166 -----lDEp~~~LD~~~~~~i~~~l~~~--~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
+||||++||+.+.+.+.+.+.++ +.+ ++++|+. +.+ ..+|..++...+.+
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~--~~~-~~~d~i~~l~~G~i 556 (582)
T 3b60_A 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL--STI-EQADEIVVVEDGII 556 (582)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCG--GGT-TTCSEEEEEETTEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccH--HHH-HhCCEEEEEECCEE
Confidence 99999999999999998888765 334 4555543 322 23455444444443
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.71 E-value=3.7e-19 Score=164.46 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=96.5
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++...+.. ..+..++
T Consensus 359 vl~~isl~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~ 421 (595)
T 2yl4_A 359 IFQDFSLSIPS--GSVTALVGPSGSGKSTVLSLLLRLYDP-----------ASGTISLDGHDIRQLNPV----WLRSKIG 421 (595)
T ss_dssp EEEEEEEEECT--TCEEEEECCTTSSSTHHHHHHTTSSCC-----------SEEEEEETTEETTTBCHH----HHHHSEE
T ss_pred cccceEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCEEhhhCCHH----HHHhceE
Confidence 45678999999 999999999999999999999999998 999999999765321100 0011122
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCC--ccccHHHHHHHHHhcccc-------------cCCCCCccc---------------
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLK--PLGHKKLIEHELEGFGLR-------------LNKEPPNID--------------- 165 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~--~~~~~~~~~~~l~~~~l~-------------~~~~~~~ls--------------- 165 (225)
+++|....+. .++..++.-+.. .....+.+.++++.+++. .......||
T Consensus 422 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 422 TVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 2222111110 000000000000 012234556666666541 111223455
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhc--CCe-EEEeecCChHHHHHHHhccccccceEEe
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIH--NAD-ITLRYDATSDDLIDVVEGNRIYVPCIYL 219 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~--~~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
+||||++||+...+.+.+.+.++ +.+ |+++|+ .+.+ ..+|..++...+.++
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~--~~~~-~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR--LSTI-KNANMVAVLDQGKIT 560 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCC--HHHH-HHSSEEEEEETTEEE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecC--HHHH-HcCCEEEEEECCEEE
Confidence 99999999999999999888775 334 344443 4444 346666665555443
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.70 E-value=4.2e-19 Score=163.63 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=47.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
..+|+||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 356 ~l~~isl~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~ 406 (578)
T 4a82_A 356 ILKDINLSIEK--GETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIK 406 (578)
T ss_dssp SEEEEEEEECT--TCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGG
T ss_pred ceeeeEEEECC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEEhh
Confidence 56788999999 999999999999999999999999998 9999999997653
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=5.4e-19 Score=163.47 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=48.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+|+||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 369 ~~l~~isl~i~~--G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~i~ 420 (598)
T 3qf4_B 369 PVLKDITFHIKP--GQKVALVGPTGSGKTTIVNLLMRFYDV-----------DRGQILVDGIDIR 420 (598)
T ss_dssp CSCCSEEEECCT--TCEEEEECCTTSSTTHHHHHHTTSSCC-----------SEEEEEETTEEGG
T ss_pred ccccceEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCeEEEECCEEhh
Confidence 468899999999 999999999999999999999999998 9999999997653
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.2e-16 Score=145.93 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=96.9
Q ss_pred CCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHH
Q psy2924 40 EGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQ 119 (225)
Q Consensus 40 is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 119 (225)
.+|++.+ |++++|+||||||||||+++|+|+..| ++|.|.+++..+..+... .... ....+.+
T Consensus 287 ~~~~i~~--Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~i~~~~q~-~~~~---~~~tv~~ 349 (538)
T 3ozx_A 287 DNGEAKE--GEIIGILGPNGIGKTTFARILVGEITA-----------DEGSVTPEKQILSYKPQR-IFPN---YDGTVQQ 349 (538)
T ss_dssp CCEEEET--TCEEEEECCTTSSHHHHHHHHTTSSCC-----------SBCCEESSCCCEEEECSS-CCCC---CSSBHHH
T ss_pred ccceECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCeeeEeechh-cccc---cCCCHHH
Confidence 3556788 999999999999999999999999998 899999988887665321 1110 0112233
Q ss_pred HHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCCCCCHH
Q psy2924 120 VIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQSELDLD 176 (225)
Q Consensus 120 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~~LD~~ 176 (225)
........ .. ......+.++++.+++. .++.+..|| +||||++||+.
T Consensus 350 ~l~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 350 YLENASKD--------AL--STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHHCSS--------TT--CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHhhhh--------cc--chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 22221100 00 01123455666666662 444455555 99999999999
Q ss_pred HHHHHHHHhhhcC---CeEEEeecCChHHHHHHHhccccc
Q psy2924 177 TVKTILSEYRIHN---ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 177 ~~~~i~~~l~~~~---~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
.+..+++.+.++. ...++..+|.++.+..++|..+++
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998887752 222333456677777777776666
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=1.4e-18 Score=160.35 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=47.7
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+++||++++ |++++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 357 ~~l~~isl~i~~--Ge~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 357 PVLSGVNFSVKP--GSLVAVLGETGSGKSTLMNLIPRLIDP-----------ERGRVEVDELDVR 408 (587)
T ss_dssp CSEEEEEEEECT--TCEEEEECSSSSSHHHHHHTTTTSSCC-----------SEEEEEESSSBGG
T ss_pred cceeceEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCccC-----------CCcEEEECCEEcc
Confidence 356788999999 999999999999999999999999998 9999999998764
No 46
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=1.4e-15 Score=132.76 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=110.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCee-EEEEcCCCCCHHHHHHHHhCCCcccccccc
Q psy2924 3 RTQKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDAR-IGFVGFPSVGKSTLLSTLAGVYSEVAAYEF 81 (225)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~-v~IiG~nGaGKSTLln~l~g~~~~v~~~~~ 81 (225)
++|+.+..+..+.+++.++.++++++......+... -...... +.. ++|+|+||||||||+|+|+|....++++++
T Consensus 135 ~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~-r~~r~~~--~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~ 211 (364)
T 2qtf_A 135 LGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKS-IESNKRN--NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLF 211 (364)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHC----------------CCEEEEECBTTSSHHHHHHHHHCC---------
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhc--CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcc
Confidence 456777788888899999999999998766543322 1111222 334 999999999999999999999888899999
Q ss_pred ceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHH---HHHHHhCCCeEEEEeeCCCcc----ccHHHHHHHHHhcc
Q psy2924 82 TTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQ---VIAVARTCSLIFIVLDVLKPL----GHKKLIEHELEGFG 154 (225)
Q Consensus 82 tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~d~~~~~----~~~~~~~~~l~~~~ 154 (225)
+|+++..|.+.++|.++.++|++|+...... .++.+ ....+..+|++++++|...+. ...+.+.+.++.++
T Consensus 212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~--~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPP--QIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp --CCSCEEEEEETTEEEEEEECCCBCSSCCG--GGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCEEEEEEECCEEEEEEeCCCchhcCCH--HHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999997543221 22222 233456789999999987643 11223445566654
Q ss_pred cccCCCCCcccccCCCCCCCH--HHHHHHH-HHhhhc-CC--eEEEee---cCChHHHHHHHhccccc
Q psy2924 155 LRLNKEPPNIDNQVPQSELDL--DTVKTIL-SEYRIH-NA--DITLRY---DATSDDLIDVVEGNRIY 213 (225)
Q Consensus 155 l~~~~~~~~lslDEp~~~LD~--~~~~~i~-~~l~~~-~~--~vi~~~---~~~~~~~~~~~~~~~~~ 213 (225)
+. ..+.+.+.++.+.++. ....... +....+ .. .++.+| ..+++++.+.+...+..
T Consensus 290 ~~---~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 290 VS---GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CC---SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cC---CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 31 2344444444444432 2211122 111222 11 344444 35788888777654444
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.64 E-value=8.2e-16 Score=140.49 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
.++|++.+ |++++|+||||||||||+++|+|+..| ++|.|.+ ...+.++....... .. .. +.
T Consensus 304 ~~~~~i~~--Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~-~~~i~~v~Q~~~~~-~~--~t-v~ 365 (538)
T 1yqt_A 304 VEPGEIKK--GEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKIEW-DLTVAYKPQYIKAD-YE--GT-VY 365 (538)
T ss_dssp ECCEEEET--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBCCCCC-CCCEEEECSSCCCC-CS--SB-HH
T ss_pred eCccccCC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEE-CceEEEEecCCcCC-CC--Cc-HH
Confidence 44455678 999999999999999999999999988 8888876 33444443211000 00 11 11
Q ss_pred HHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCCCCCH
Q psy2924 119 QVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQSELDL 175 (225)
Q Consensus 119 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~~LD~ 175 (225)
.......... ....+.+.++++.+++. .++.+..|| +||||++||+
T Consensus 366 ~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 366 ELLSKIDASK-----------LNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434 (538)
T ss_dssp HHHHHHHHHH-----------HTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred HHHHhhhccC-----------CCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 1111110000 00123345555555552 333344444 9999999999
Q ss_pred HHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccc
Q psy2924 176 DTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 176 ~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
..+..+++.+.++ +.+|++ .+|..+.+..+++..+++
T Consensus 435 ~~~~~i~~~l~~l~~~~g~tvi~-vsHd~~~~~~~~drv~vl 475 (538)
T 1yqt_A 435 EQRLAVSRAIRHLMEKNEKTALV-VEHDVLMIDYVSDRLMVF 475 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEE-ECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 9999999998765 334333 445567777777765555
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.63 E-value=1.1e-15 Score=141.33 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=88.7
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
.++|++.+ |++++|+||||||||||+++|+|+..| ++|.|.+ ...+.++...... .. ... +.
T Consensus 374 ~~~~~v~~--Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~-~~~i~~v~Q~~~~-~~--~~t-v~ 435 (607)
T 3bk7_A 374 VEPGEIRK--GEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKVEW-DLTVAYKPQYIKA-EY--EGT-VY 435 (607)
T ss_dssp ECCEEEET--TCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBSCCCC-CCCEEEECSSCCC-CC--SSB-HH
T ss_pred ecccccCC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEE-eeEEEEEecCccC-CC--CCc-HH
Confidence 34445678 999999999999999999999999988 8888876 3344443221000 00 011 11
Q ss_pred HHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------ccCCCCCCCH
Q psy2924 119 QVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQVPQSELDL 175 (225)
Q Consensus 119 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lDEp~~~LD~ 175 (225)
+........ .....+.+.++++.+++. .++.+..|| +||||++||+
T Consensus 436 e~~~~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 436 ELLSKIDSS-----------KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 504 (607)
T ss_dssp HHHHHHHHH-----------HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred HHHHhhhcc-----------CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH
Confidence 211111000 000123455566666662 344444555 9999999999
Q ss_pred HHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccc
Q psy2924 176 DTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 176 ~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
..+..+++.++++ +.+|+ ..+|.++.+..+++..+++
T Consensus 505 ~~~~~l~~~l~~l~~~~g~tvi-~vsHd~~~~~~~adrv~vl 545 (607)
T 3bk7_A 505 EQRLAVSRAIRHLMEKNEKTAL-VVEHDVLMIDYVSDRLIVF 545 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHhCCEEEEE
Confidence 9999999988775 23433 3455566766666665555
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.62 E-value=2.8e-16 Score=143.58 Aligned_cols=166 Identities=16% Similarity=0.062 Sum_probs=89.6
Q ss_pred ccCCC-CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEE---------EEcCceEE
Q psy2924 30 TPKGG-GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCI---------KYKGAKIQ 99 (225)
Q Consensus 30 ~~~~~-~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i---------~~~g~~i~ 99 (225)
++.++ ....++| ++.+ |++++|+||||||||||+++|+|+..| ++|.+ .++|.++.
T Consensus 30 ~yg~~~~~l~~vs-~i~~--Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-----------~~G~~~~~~~~~~~~~~g~~~~ 95 (538)
T 1yqt_A 30 RYGVNAFVLYRLP-VVKE--GMVVGIVGPNGTGKSTAVKILAGQLIP-----------NLCGDNDSWDGVIRAFRGNELQ 95 (538)
T ss_dssp ECSTTCCEEECCC-CCCT--TSEEEEECCTTSSHHHHHHHHHTSSCC-----------CTTTTCCSHHHHHHHTTTSTHH
T ss_pred EECCccccccCcC-cCCC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccCcchhhhHHhhCCccHH
Confidence 55443 2577888 8999 999999999999999999999999988 56653 12222211
Q ss_pred EEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc------------
Q psy2924 100 LLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID------------ 165 (225)
Q Consensus 100 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls------------ 165 (225)
....+.. .....+++..|....+.... ...+.+........+.+.++++.+++. .++.+..||
T Consensus 96 ~~~~~~~--~~~~~~~~~~q~~~~~~~~~-~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 96 NYFEKLK--NGEIRPVVKPQYVDLIPKAV-KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp HHHHHHH--TTSCCCEEECSCGGGSGGGC-CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHH--HHhhhhhhhhhhhhhcchhh-hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 0000000 00000000000000000000 000000000001112356677777773 344455555
Q ss_pred ---------ccCCCCCCCHHHHHHHHHHhhhc---CCeEEEeecCChHHHHHHHhccccc
Q psy2924 166 ---------NQVPQSELDLDTVKTILSEYRIH---NADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ---------lDEp~~~LD~~~~~~i~~~l~~~---~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+++.++.+ +.+|++ .+|..+.+...++...++
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~-vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV-VEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE-ECSCHHHHHHHCSEEEEE
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEE
Confidence 99999999999999888888765 334333 444566666666665544
No 50
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.62 E-value=2.8e-15 Score=132.75 Aligned_cols=169 Identities=25% Similarity=0.423 Sum_probs=109.1
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccCCcc
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~ 115 (225)
.++++|++.. ++.++|+|+||||||||+|+|++..+.+++||+||..+..|.+.+++ ..+.+.|+|++...+.....
T Consensus 147 ~~~i~lelk~--g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 147 KRRLRLELML--IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp EEEEEEEECC--SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC
T ss_pred EeeeeeEEcC--CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh
Confidence 4578899999 99999999999999999999999988899999999999999999886 78899999998754443333
Q ss_pred hHHHHHHHHhCCCeEEEEeeCC-CccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCCeEEE
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVL-KPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADITL 194 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~vi~ 194 (225)
+..++....+.++.+++++|.. .+..........+..+...+...|..+.+ ...+-.+......+.+.+......++.
T Consensus 225 L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl-NKlDl~~~~~~~~l~~~l~~~g~~vi~ 303 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL-NKVDLLEEEAVKALADALAREGLAVLP 303 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE-ECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred hhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE-ECCChhhHHHHHHHHHHHHhcCCeEEE
Confidence 3344455567889999999885 22111112222222221112223333333 222222223334444445444445666
Q ss_pred eec---CChHHHHHHHh
Q psy2924 195 RYD---ATSDDLIDVVE 208 (225)
Q Consensus 195 ~~~---~~~~~~~~~~~ 208 (225)
+|. .+++++...+.
T Consensus 304 iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 304 VSALTGAGLPALKEALH 320 (416)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHH
Confidence 564 45666665543
No 51
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.61 E-value=1.6e-16 Score=140.47 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCCCCCceeeccCCe--------------------eEEEEcCCCCCHHHHHHHHhCCCccccc---ccc--ceeeccceE
Q psy2924 36 GGPGEGFDVAKTGDA--------------------RIGFVGFPSVGKSTLLSTLAGVYSEVAA---YEF--TTLTTVPGC 90 (225)
Q Consensus 36 ~~~~is~~i~~~~g~--------------------~v~IiG~nGaGKSTLln~l~g~~~~v~~---~~~--tt~~~~~G~ 90 (225)
..++++|++++ |+ +++|+||||||||||+|+|+|+..|... +.+ +|+ .|.
T Consensus 38 ~l~~is~~i~~--Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~---~~~ 112 (413)
T 1tq4_A 38 ILNLIELRMRA--GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM---ERH 112 (413)
T ss_dssp HHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C---CCE
T ss_pred HhhhccceecC--CCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce---eEE
Confidence 56688999999 99 9999999999999999999999876211 111 111 122
Q ss_pred EEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHH--hCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCc
Q psy2924 91 IKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVA--RTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPN 163 (225)
Q Consensus 91 i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ 163 (225)
+.-.. ..++..|++++... . ....+....+ ...+.... ++.....+++..+...+...+.. .-..+..
T Consensus 113 v~q~~~~~~ltv~D~~g~~~~-~---~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 113 PYKHPNIPNVVFWDLPGIGST-N---FPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp EEECSSCTTEEEEECCCGGGS-S---CCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred eccccccCCeeehHhhcccch-H---HHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 22111 24567777776431 1 1122222222 23344333 44432222233334444443321 1123455
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhhc
Q psy2924 164 IDNQVPQSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 164 lslDEp~~~LD~~~~~~i~~~l~~~ 188 (225)
+.+||||++||+..+..+++.+.++
T Consensus 188 llLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 188 DITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred cccCcccccCCHHHHHHHHHHHHHH
Confidence 6699999999998777776666554
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.9e-15 Score=139.70 Aligned_cols=151 Identities=18% Similarity=0.112 Sum_probs=88.3
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHH
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIA 122 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 122 (225)
.+.+ |++++|+||||||||||+|+|+|+..| ++|.+......-. ... ...+.........
T Consensus 99 ~~~~--Gei~~LvGpNGaGKSTLLkiL~Gll~P-----------~~G~i~~~~~~~~------~~~-~~~g~~~~~~~~~ 158 (608)
T 3j16_B 99 TPRP--GQVLGLVGTNGIGKSTALKILAGKQKP-----------NLGRFDDPPEWQE------IIK-YFRGSELQNYFTK 158 (608)
T ss_dssp CCCT--TSEEEEECCTTSSHHHHHHHHHTSSCC-----------CTTTTCCSSCHHH------HHH-HTTTSTHHHHHHH
T ss_pred CCCC--CCEEEEECCCCChHHHHHHHHhcCCCC-----------CCceEecccchhh------hhh-eecChhhhhhhhH
Confidence 4567 999999999999999999999999998 7776621100000 000 0000000000001
Q ss_pred H-HhCCCeEEEE--eeC-----C------------CccccHHHHHHHHHhcccc--cCCCCCccc---------------
Q psy2924 123 V-ARTCSLIFIV--LDV-----L------------KPLGHKKLIEHELEGFGLR--LNKEPPNID--------------- 165 (225)
Q Consensus 123 ~-~~~~~~~l~~--~d~-----~------------~~~~~~~~~~~~l~~~~l~--~~~~~~~ls--------------- 165 (225)
. .......... ++. . ......+.+.++++.+++. +++.+..||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 1 1111111100 000 0 0011235677888888883 566677777
Q ss_pred ------ccCCCCCCCHHHHHHHHHHhhhcCC--eEEEeecCChHHHHHHHhccccc
Q psy2924 166 ------NQVPQSELDLDTVKTILSEYRIHNA--DITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 ------lDEp~~~LD~~~~~~i~~~l~~~~~--~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+++.++++.. ..++..+|.++.+..+.+...++
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999998888877632 23333566677777777665554
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.60 E-value=7.5e-16 Score=142.42 Aligned_cols=43 Identities=23% Similarity=0.064 Sum_probs=37.1
Q ss_pred ccCCC-CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 30 TPKGG-GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 30 ~~~~~-~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
++.++ ....++| ++.+ |++++|+||||||||||+++|+|+..|
T Consensus 100 ~yg~~~~~l~~vs-~i~~--Ge~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 100 RYGVNAFVLYRLP-IVKD--GMVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp ECSTTCCEEECCC-CCCT--TSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EECCCCeeeCCCC-CCCC--CCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 44443 2577888 8899 999999999999999999999999988
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.60 E-value=6.3e-18 Score=168.22 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=93.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+|+||+|++ |+++||||++|||||||+++|.|++.| ++|.|.++|.++..++... .+..++
T Consensus 1094 VL~~isl~I~~--Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~iDG~di~~i~~~~----lR~~i~ 1156 (1321)
T 4f4c_A 1094 ILKGLSFSVEP--GQTLALVGPSGCGKSTVVALLERFYDT-----------LGGEIFIDGSEIKTLNPEH----TRSQIA 1156 (1321)
T ss_dssp SEEEEEEEECT--TCEEEEECSTTSSTTSHHHHHTTSSCC-----------SSSEEEETTEETTTBCHHH----HHTTEE
T ss_pred cccceeEEECC--CCEEEEECCCCChHHHHHHHHhcCccC-----------CCCEEEECCEEhhhCCHHH----HHhheE
Confidence 56789999999 999999999999999999999999998 9999999998775443211 122333
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCc-cccHHHHHHHHHhcccc-----c----C-------------------------CC
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKP-LGHKKLIEHELEGFGLR-----L----N-------------------------KE 160 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~~l~-----~----~-------------------------~~ 160 (225)
+++|.+.+|.. ++-.++.-+..+ ....+.+.++++..++. + + +.
T Consensus 1157 ~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~ 1235 (1321)
T 4f4c_A 1157 IVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235 (1321)
T ss_dssp EECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSC
T ss_pred EECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhC
Confidence 33333222210 000001001111 12234555666655541 0 0 23
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcC--Ce-EEEeec
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHN--AD-ITLRYD 197 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~--~~-vi~~~~ 197 (225)
++.|.+||||++||+++.+.+.+.+.+.. .+ |+++|.
T Consensus 1236 ~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1236 PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp CSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 34455999999999999999999998763 34 666665
No 55
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.59 E-value=8.1e-16 Score=135.16 Aligned_cols=94 Identities=24% Similarity=0.485 Sum_probs=80.3
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcC-----------------ceEEEEeCC
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKG-----------------AKIQLLDLP 104 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g-----------------~~i~~~d~~ 104 (225)
.+.. |..++|+|+||||||||+|+|+|... .+++|||||++|+.|.+.+.| ..+.++|+|
T Consensus 16 ~v~~--g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 16 RPGN--NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSS--CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred cccC--CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 4556 88999999999999999999999887 899999999999999999987 357889999
Q ss_pred CCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 105 GIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
|+........++..++...++.+|.++++++...
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9887665555565677788889999999988753
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.59 E-value=2.1e-15 Score=137.69 Aligned_cols=134 Identities=18% Similarity=0.170 Sum_probs=78.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEE-----------EEcCceEEEEeCCCCCCCccCCcchH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCI-----------KYKGAKIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i-----------~~~g~~i~~~d~~g~~~~~~~~~~~~ 117 (225)
|+++||+||||||||||+|+|+|+..| +.|.+ .+.|.++..+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p-----------~~G~i~~~~~~~~~~~~~~g~~i~~~---------------- 77 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIP-----------NFGDPNSKVGKDEVLKRFRGKEIYNY---------------- 77 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTCTTSCCCHHHHHHHHTTSTTHHH----------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCccccccchhhHHhhcCCeeHHHH----------------
Confidence 899999999999999999999999988 77766 2333221100
Q ss_pred HHHHHHH-hCCCeEEEEeeCC---------------CccccHHHHHHHHHhcccc--cCCCCCccc--------------
Q psy2924 118 RQVIAVA-RTCSLIFIVLDVL---------------KPLGHKKLIEHELEGFGLR--LNKEPPNID-------------- 165 (225)
Q Consensus 118 ~~~~~~~-~~~~~~l~~~d~~---------------~~~~~~~~~~~~l~~~~l~--~~~~~~~ls-------------- 165 (225)
. .... ...... ...... ......+.+.++++.+++. .++.+..||
T Consensus 78 ~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 78 F--KELYSNELKIV-HKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp H--HHHHTTCCCEE-EECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred H--HHHhhcccchh-hccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 0 0000 000000 000000 0000112345566666662 344444455
Q ss_pred -------ccCCCCCCCHHHHHHHHHHhhhcC--CeEEEeecCChHHHHHHHhccccc
Q psy2924 166 -------NQVPQSELDLDTVKTILSEYRIHN--ADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 166 -------lDEp~~~LD~~~~~~i~~~l~~~~--~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
+||||++||+..+..+++.++++. .+|+ ..+|.++.+...++...++
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii-~vsHdl~~~~~~~d~i~vl 210 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI-VVDHDLIVLDYLTDLIHII 210 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHCSEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEE-EEEeChHHHHhhCCEEEEe
Confidence 999999999999999888887763 3333 3455567776666654443
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.58 E-value=1.9e-15 Score=145.19 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=45.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
...+++||++.+ |++++|+||||||||||+++|+|+..| ++|.|.+++.
T Consensus 687 ~iL~dVSl~I~~--GeivaIiGpNGSGKSTLLklLaGll~P-----------~sG~I~~~~~ 735 (986)
T 2iw3_A 687 PQITDINFQCSL--SSRIAVIGPNGAGKSTLINVLTGELLP-----------TSGEVYTHEN 735 (986)
T ss_dssp CSEEEEEEEEET--TCEEEECSCCCHHHHHHHHHHTTSSCC-----------SEEEEEECTT
T ss_pred eeeeccEEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEcCc
Confidence 467889999999 999999999999999999999999998 8999998763
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.5e-15 Score=137.13 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=91.5
Q ss_pred CCCCCCceeeccCC-----eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 36 GGPGEGFDVAKTGD-----ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 36 ~~~~is~~i~~~~g-----~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
..++++|++.. | ++++|+||||||||||+++|+|+..| ++|.. +....+..+... .....
T Consensus 362 ~l~~vsl~v~~--G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~~-~~~~~i~~~~q~-~~~~~ 426 (608)
T 3j16_B 362 TQGDFVLNVEE--GEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----------DEGQD-IPKLNVSMKPQK-IAPKF 426 (608)
T ss_dssp ECSSCEEEECC--EECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----------SBCCC-CCSCCEEEECSS-CCCCC
T ss_pred ccCceEEEEec--CccccceEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCcC-ccCCcEEEeccc-ccccC
Confidence 45678899888 6 78999999999999999999999998 66652 222223322110 00000
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc--cCCCCCccc---------------------cc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR--LNKEPPNID---------------------NQ 167 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ls---------------------lD 167 (225)
. ..+.+... ... .........+.++++.+++. .++.+..|| +|
T Consensus 427 -~--~tv~e~~~--~~~---------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 427 -P--GTVRQLFF--KKI---------RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp -C--SBHHHHHH--HHC---------SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred -C--ccHHHHHH--HHh---------hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 11222111 000 00011223455666776662 445555566 99
Q ss_pred CCCCCCCHHHHHHHHHHhhhc----CCeEEEeecCChHHHHHHHhccccc
Q psy2924 168 VPQSELDLDTVKTILSEYRIH----NADITLRYDATSDDLIDVVEGNRIY 213 (225)
Q Consensus 168 Ep~~~LD~~~~~~i~~~l~~~----~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (225)
|||++||+..+..+++.+.++ +.+| +..+|.++.+..++|..+++
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tv-iivtHdl~~~~~~aDrvivl 541 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTA-FIVEHDFIMATYLADKVIVF 541 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEE-EEECSCHHHHHHHCSEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEE-EEEeCCHHHHHHhCCEEEEE
Confidence 999999999999988888765 2343 33556677877777777666
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.58 E-value=1.3e-16 Score=158.55 Aligned_cols=52 Identities=27% Similarity=0.439 Sum_probs=48.6
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
...+++||++++ |+++||+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 1047 ~~l~~vsl~i~~--Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----------~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1047 PVLQGLSLEVKK--GQTLALVGSSGCGKSTVVQLLERFYDP-----------MAGSVFLDGKEIK 1098 (1284)
T ss_dssp CSBSSCCEEECS--SSEEEEECSSSTTHHHHHHHHTTSSCC-----------SEEEEESSSSCTT
T ss_pred eeecceeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEcc
Confidence 368899999999 999999999999999999999999998 9999999998764
No 60
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=4.3e-15 Score=130.98 Aligned_cols=171 Identities=25% Similarity=0.371 Sum_probs=87.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE---------------------cC---ceEEEEeCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY---------------------KG---AKIQLLDLPGI 106 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~---------------------~g---~~i~~~d~~g~ 106 (225)
.++|+|.||||||||+|+|++....+++|||||+++..|.+.+ ++ .++.++|+||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 5899999999999999999998877899999999999997543 22 46889999998
Q ss_pred CCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc-------------cccHHHHHHHHHhccc-ccCCCCCccc-------
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP-------------LGHKKLIEHELEGFGL-RLNKEPPNID------- 165 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-------------~~~~~~~~~~l~~~~l-~~~~~~~~ls------- 165 (225)
...+....++..++...++.+|++++++|.... ..+.+.+...|....+ .+.+..+.+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~~ 161 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQK 161 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSSC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 754433334444555566889999999998653 2233344444433311 0111111111
Q ss_pred ------ccCCC--CCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccc-cceEEeccCCCC
Q psy2924 166 ------NQVPQ--SELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIY-VPCIYLLNKIGE 225 (225)
Q Consensus 166 ------lDEp~--~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 225 (225)
+.+-+ -+.+......+++.+..... ..+++.+++..+....+.. .|++++.||.|+
T Consensus 162 ~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~ 226 (397)
T 1wxq_A 162 IKLESAIAEHLSGIGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAANKADA 226 (397)
T ss_dssp CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGG
T ss_pred ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEEeCccc
Confidence 00001 12345555666666644322 1355566655555554444 899999999874
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.55 E-value=3.6e-15 Score=139.54 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHH
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLL 66 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLl 66 (225)
.....+++||+|++ |++++|+||||||||||+
T Consensus 30 ~~~~L~~vsl~i~~--Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPR--GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEET--TSEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECC--CCEEEEECCCCCCHHHHh
Confidence 35679999999999 999999999999999997
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.53 E-value=1.6e-16 Score=157.75 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=47.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
..+|+||++++ |+.++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 405 vL~~isl~i~~--G~~~~ivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 405 ILKGLNLKVKS--GQTVALVGNSGCGKSTTVQLMQRLYDP-----------LDGMVSIDGQDIR 455 (1284)
T ss_dssp SEEEEEEEECT--TCEEEEECCSSSSHHHHHHHTTTSSCC-----------SEEEEEETTEEGG
T ss_pred ceecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEHH
Confidence 56788999999 999999999999999999999999998 9999999997653
No 63
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=1e-14 Score=126.85 Aligned_cols=90 Identities=31% Similarity=0.562 Sum_probs=69.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-----------------ceEEEEeCCCCCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-----------------AKIQLLDLPGIIEGAK 111 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 111 (225)
+..++|+|.||||||||+|+|++....+++|||||.+|..|.+.+.+ ..+.++|+||+...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 35799999999999999999999887789999999999999998876 4689999999876543
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
.+.++..++...++.+|++++++|...
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 333444566677899999999998764
No 64
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.51 E-value=6.3e-14 Score=123.06 Aligned_cols=93 Identities=25% Similarity=0.539 Sum_probs=59.0
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc-----------------eEEEEeCCC
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA-----------------KIQLLDLPG 105 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~-----------------~i~~~d~~g 105 (225)
.+.. +..++|+|+||||||||+|+|+|....+++|||||.+|..|.+.+.+. .+.++|+||
T Consensus 18 ~i~~--~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 18 RFGT--SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CSSS--CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred hccC--CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 3455 788999999999999999999998878899999999999999987653 488999999
Q ss_pred CCCCccCCcchHHHHHHHHhCCCeEEEEeeCC
Q psy2924 106 IIEGAKDGKGRGRQVIAVARTCSLIFIVLDVL 137 (225)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 137 (225)
+......+.++..++...++.+|++++++|..
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecC
Confidence 98765544555557778889999999998875
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.51 E-value=1.2e-16 Score=159.05 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=47.0
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
..+|+||++++ |+.++||||+|||||||++.|+|++.| .+|.|.++|.++.
T Consensus 433 vL~~isl~i~~--G~~vaivG~sGsGKSTll~ll~~~~~~-----------~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 433 ILRGMNLRVNA--GQTVALVGSSGCGKSTIISLLLRYYDV-----------LKGKITIDGVDVR 483 (1321)
T ss_dssp SEEEEEEEECT--TCEEEEEECSSSCHHHHHHHHTTSSCC-----------SEEEEEETTEETT
T ss_pred eeeceEEeecC--CcEEEEEecCCCcHHHHHHHhcccccc-----------ccCcccCCCccch
Confidence 46688999999 999999999999999999999999999 9999999997654
No 66
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.4e-15 Score=134.84 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=40.7
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccce-E-EEEcC
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG-C-IKYKG 95 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G-~-i~~~g 95 (225)
+++|++.+ |++++|+||||||||||+++|+|+..| +.| . |.+++
T Consensus 130 ~vsl~i~~--Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----------~~G~~pI~vdg 175 (460)
T 2npi_A 130 KIRMSNFE--GPRVVIVGGSQTGKTSLSRTLCSYALK-----------FNAYQPLYINL 175 (460)
T ss_dssp HHHHHSSS--CCCEEEEESTTSSHHHHHHHHHHTTHH-----------HHCCCCEEEEC
T ss_pred cCceEeCC--CCEEEEECCCCCCHHHHHHHHhCcccc-----------cCCceeEEEcC
Confidence 58999999 999999999999999999999999988 888 7 88776
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.45 E-value=2.6e-14 Score=137.39 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=89.8
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
++...+++||++.+ |++++|+||||||||||+++|+|-.. ..++.. ....+.+-.++. .....
T Consensus 447 ~~~iL~~vsl~I~~--Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~----~~~~~~~v~q~~-----~~~~~---- 509 (986)
T 2iw3_A 447 AKILLNKTQLRLKR--ARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQ----EECRTVYVEHDI-----DGTHS---- 509 (986)
T ss_dssp TEEEEEEEEEEEET--TCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCT----TTSCEEETTCCC-----CCCCT----
T ss_pred CEEeEecceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCc--CCCccc----cceeEEEEcccc-----ccccc----
Confidence 34457788999999 99999999999999999999994211 111100 000111111110 00000
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccc---cCCCCCccc---------------------ccC
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLR---LNKEPPNID---------------------NQV 168 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~---~~~~~~~ls---------------------lDE 168 (225)
... +.+.... .. .. . .+.+.++++.+|+. .++.+..|| +||
T Consensus 510 ~lt-v~e~l~~-~~----------~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 510 DTS-VLDFVFE-SG----------VG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp TSB-HHHHHHT-TC----------SS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCc-HHHHHHH-hh----------cC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 000 1111110 00 00 0 34566677777762 344444555 999
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCeEEEeecCChHHHHHHHhccccccceEE
Q psy2924 169 PQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 169 p~~~LD~~~~~~i~~~l~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
||++||+.+++.+.+.+...+.+ ++..+|..+.+...++..+.+..+.+
T Consensus 575 PTs~LD~~~~~~l~~~L~~~g~t-vIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNTCGIT-SITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSE-EEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CccCCCHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHhCCEEEEEECCee
Confidence 99999999999999999884334 33355667777777777666655544
No 68
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.43 E-value=4e-13 Score=116.20 Aligned_cols=161 Identities=29% Similarity=0.407 Sum_probs=108.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC-ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.|+|+|.+|||||||+|+|++....+++||+||.+|..|.+.+++ ..+.++|+||+...+....++..++...++.+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 599999999999999999999887889999999999999999886 7899999999765444445566777777788999
Q ss_pred EEEEeeCCC---c--cccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHH-HHHHHHHhhhcCCeEEE---eecCCh
Q psy2924 130 IFIVLDVLK---P--LGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDT-VKTILSEYRIHNADITL---RYDATS 200 (225)
Q Consensus 130 ~l~~~d~~~---~--~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~-~~~i~~~l~~~~~~vi~---~~~~~~ 200 (225)
+++++|... . .+..+.+.+.+..+.-.+ ...+.+.+-++.+-++... .+.+.+.+... ..++. .+..++
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~-~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVANKMDMPEAAENLEAFKEKLTDD-YPVFPISAVTREGL 317 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEECTTSTTHHHHHHHHHHHCCSC-CCBCCCSSCCSSTT
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEECccCCCCHHHHHHHHHHhhcC-CCEEEEECCCCcCH
Confidence 999999865 2 222223333444432111 2345556566666555432 33343433321 23332 335678
Q ss_pred HHHHHHHhccccc
Q psy2924 201 DDLIDVVEGNRIY 213 (225)
Q Consensus 201 ~~~~~~~~~~~~~ 213 (225)
+++...+...+..
T Consensus 318 ~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 318 RELLFEVANQLEN 330 (342)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhh
Confidence 8888776554443
No 69
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.43 E-value=1.4e-12 Score=111.08 Aligned_cols=158 Identities=24% Similarity=0.281 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEc-CceEEEEeCCCCCCCcc-C--CcchHHHHHHHH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYK-GAKIQLLDLPGIIEGAK-D--GKGRGRQVIAVA 124 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~-g~~i~~~d~~g~~~~~~-~--~~~~~~~~~~~~ 124 (225)
-+|+|+|++|||||||+|.|+|... .++++|+||++...|.+... +.++.++||||...... . +..+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 3899999999999999999999876 47899999999999999888 89999999999875331 1 112333445667
Q ss_pred hCCCeEEEEeeCCCcccc-HHHH-HHHHHhcccccCCCCCcccccCCCCCC-CHHHHHHHHHHhhhcC---CeEEEee--
Q psy2924 125 RTCSLIFIVLDVLKPLGH-KKLI-EHELEGFGLRLNKEPPNIDNQVPQSEL-DLDTVKTILSEYRIHN---ADITLRY-- 196 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~~~~-~~~~-~~~l~~~~l~~~~~~~~lslDEp~~~L-D~~~~~~i~~~l~~~~---~~vi~~~-- 196 (225)
..+|++++++|....... ...+ .+.+... ..+.+.+-++.+.. +........+.+.... ..++.+|
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~------~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~ 164 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKPL------NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL 164 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGGG------CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHhc------CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 889999999998764221 1122 3333332 34555544444444 3333333333333321 3344444
Q ss_pred -cCChHHHHHHHhccccc
Q psy2924 197 -DATSDDLIDVVEGNRIY 213 (225)
Q Consensus 197 -~~~~~~~~~~~~~~~~~ 213 (225)
+.+++++++.+...+..
T Consensus 165 ~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 165 KGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTBSHHHHHHHHHHHSCB
T ss_pred CCCCHHHHHHHHHHhCcc
Confidence 45788887776654443
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.42 E-value=9e-15 Score=114.28 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g 71 (225)
++||++++ |++++|+||||||||||++++.+
T Consensus 1 ~vsl~i~~--gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPE--LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEES--SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCC--CEEEEEECCCCCCHHHHHHHHcc
Confidence 57999999 99999999999999999998654
No 71
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.42 E-value=1.8e-13 Score=113.82 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=71.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccC----Cc-chHHHHHHHHh
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD----GK-GRGRQVIAVAR 125 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~----~~-~~~~~~~~~~~ 125 (225)
.++|+|.+|||||||+|.|+|....++++|++|.+...|.+.+++..+.++|+||....... .. ....+......
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~ 82 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDL 82 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhC
Confidence 68999999999999999999998889999999999999999999999999999998754321 11 11112222337
Q ss_pred CCCeEEEEeeCCCc
Q psy2924 126 TCSLIFIVLDVLKP 139 (225)
Q Consensus 126 ~~~~~l~~~d~~~~ 139 (225)
++|++++++|....
T Consensus 83 ~~d~vi~VvDas~~ 96 (256)
T 3iby_A 83 EYDCIINVIDACHL 96 (256)
T ss_dssp CCSEEEEEEEGGGH
T ss_pred CCCEEEEEeeCCCc
Confidence 89999999998753
No 72
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.42 E-value=1.4e-13 Score=128.79 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHh
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLA 70 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~ 70 (225)
...+++||+|++ |++++|+||||||||||+|+|+
T Consensus 336 ~~L~~vsl~I~~--Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPL--GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEET--TSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecC--CCEEEEEeeCCCCHHHHHHHHH
Confidence 357899999999 9999999999999999999865
No 73
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.42 E-value=1.8e-11 Score=106.28 Aligned_cols=193 Identities=21% Similarity=0.217 Sum_probs=122.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhhc-----------cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 4 TQKNKATAGHLGLLKARIAKLRRELIT-----------PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.|+.+..+.+..+.+.++..+.+++.. .+.. .+++ .. ...++++|+||||||||+|.++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~---~~~~---~~--~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 119 SNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDL---PVVD---LE--IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGS---CCCC---SS--SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CccC---CC--CCEEEEECCCCCCHHHHHHHHhCC
Confidence 566777888888888877776433321 1111 1111 12 568999999999999999999999
Q ss_pred CccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHH-HHHhCCCeEEEEeeCCCcc----c-cHHH
Q psy2924 73 YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVI-AVARTCSLIFIVLDVLKPL----G-HKKL 145 (225)
Q Consensus 73 ~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~d~~~~~----~-~~~~ 145 (225)
...++++|++|.+...+.+...+..+.++|+||.......... ...+.. .....++.+++++|..... . ..+.
T Consensus 191 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~ 270 (357)
T 2e87_A 191 KPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHL 270 (357)
T ss_dssp CCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHH
T ss_pred CCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHH
Confidence 8778889999999888888888889999999998653322221 112222 2334588899999975432 1 1222
Q ss_pred HHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---cCChHHHHHHHhc
Q psy2924 146 IEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 146 ~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~~~~~~~~~~~~~ 209 (225)
+.++.+..+ ..+.+.+-+..+..+......+.+.+......++.+| +.+++++.+.+..
T Consensus 271 ~~~i~~~~~-----~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 271 FEEVHGEFK-----DLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp HHHHHHHTT-----TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHhcC-----CCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 333332221 3455666666666666555555555544444444444 5678888766544
No 74
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.41 E-value=3.5e-13 Score=114.54 Aligned_cols=155 Identities=20% Similarity=0.180 Sum_probs=96.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCC-CCccCCc--chHHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII-EGAKDGK--GRGRQVIAVA 124 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~--~~~~~~~~~~ 124 (225)
+.+++|+|+||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||.. ... ... .+.......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-RAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-HHHHHHHTCCTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-hhHHHHHHHHHHHHH
Confidence 45899999999999999999999876 578899999998889888888999999999975 211 000 0000011233
Q ss_pred hCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCC-HHHHHHHHHHhhh-cCC-eEEEee---cC
Q psy2924 125 RTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELD-LDTVKTILSEYRI-HNA-DITLRY---DA 198 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD-~~~~~~i~~~l~~-~~~-~vi~~~---~~ 198 (225)
..+|++++++|........+.+.+.+.. ...|.+.+-+..+..+ .......++.+.. ++. .++.+| ..
T Consensus 87 ~~~D~vl~Vvd~~~~~~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 87 GDVELVIFVVEGTRWTPDDEMVLNKLRE------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHHHHHHS------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHh------cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 5677788888875522222334343432 2345555445544443 3444444444443 232 344445 35
Q ss_pred ChHHHHHHHhcc
Q psy2924 199 TSDDLIDVVEGN 210 (225)
Q Consensus 199 ~~~~~~~~~~~~ 210 (225)
+++++.+.+...
T Consensus 161 ~v~~l~~~i~~~ 172 (301)
T 1ega_A 161 NVDTIAAIVRKH 172 (301)
T ss_dssp THHHHHHHHHTT
T ss_pred CHHHHHHHHHHh
Confidence 677777776543
No 75
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=2e-12 Score=115.17 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=90.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCc--chHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGK--GRGRQVIAVARTC 127 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 127 (225)
.++|+|.||||||||+|.++|... .++++|++|++...+.+.++|..+.++||||+........ .+..+....++.+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 699999999999999999999875 4799999999999999999999999999999865322222 2445667788999
Q ss_pred CeEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHH-HHHhhhcCC-e---EEEeecCChH
Q psy2924 128 SLIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTI-LSEYRIHNA-D---ITLRYDATSD 201 (225)
Q Consensus 128 ~~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i-~~~l~~~~~-~---vi~~~~~~~~ 201 (225)
|++++++|+..... ..+.+.++++.. ..+.+.+-++.+..+.. ...+ .+.+ .++. . +...|+.+++
T Consensus 83 d~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~ 154 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLD 154 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHH
Confidence 99999999875422 233455555543 34555555555543221 1222 2222 3332 3 3334456788
Q ss_pred HHHHHHh
Q psy2924 202 DLIDVVE 208 (225)
Q Consensus 202 ~~~~~~~ 208 (225)
++.+.+.
T Consensus 155 ~L~~~i~ 161 (439)
T 1mky_A 155 TMLETII 161 (439)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776653
No 76
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=1.8e-12 Score=115.52 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=69.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-----CcchHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-----GKGRGRQVIA 122 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-----~~~~~~~~~~ 122 (225)
...++|+|+||||||||+|+|+|... .++++|+||+++..|.+.++|.++.++|++|....... ......+...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 46899999999999999999999876 58999999999999999999999999999997543211 1111122344
Q ss_pred HHhCCCeEEEEeeCCCcc-ccHHHHHHHHHhc
Q psy2924 123 VARTCSLIFIVLDVLKPL-GHKKLIEHELEGF 153 (225)
Q Consensus 123 ~~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~ 153 (225)
.+..++++++++|..... .....+.+.+...
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~ 291 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQRMAGLMERR 291 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 567789999998876542 2223344444443
No 77
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.39 E-value=9.4e-12 Score=105.74 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=99.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~~ 128 (225)
+++|+|++|||||||+|.|+|... .+++.|+||++...|.+..++.++.++||||+...... ...+.......+..+|
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad 88 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 88 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999876 57889999999888888888889999999998753211 1113344456678899
Q ss_pred eEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHH-HHHHHHHhhhcCCeEEEeec---CChHHH
Q psy2924 129 LIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDT-VKTILSEYRIHNADITLRYD---ATSDDL 203 (225)
Q Consensus 129 ~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~-~~~i~~~l~~~~~~vi~~~~---~~~~~~ 203 (225)
++++++|+..... ...++.+.++.. ....+.+.+-++.+-.+... .....+.+.. ...++.+|. .+++++
T Consensus 89 ~il~VvD~~~~~~~~~~~i~~~l~~~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 89 AVVWVVDLRHPPTPEDELVARALKPL----VGKVPILLVGNKLDAAKYPEEAMKAYHELLP-EAEPRMLSALDERQVAEL 163 (301)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHHGGG----TTTSCEEEEEECGGGCSSHHHHHHHHHHTST-TSEEEECCTTCHHHHHHH
T ss_pred EEEEEEECCCCCChHHHHHHHHHHhh----cCCCCEEEEEECcccCCchHHHHHHHHHhcC-cCcEEEEeCCCCCCHHHH
Confidence 9999999875422 223444444432 01345555445544443322 2233333311 123444443 466677
Q ss_pred HHHHhcc
Q psy2924 204 IDVVEGN 210 (225)
Q Consensus 204 ~~~~~~~ 210 (225)
.+.+...
T Consensus 164 ~~~l~~~ 170 (301)
T 1wf3_A 164 KADLLAL 170 (301)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 6666543
No 78
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.39 E-value=4.2e-13 Score=106.97 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=41.3
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
|.+.+ |..++|+|+||||||||+|+|+|... .+.+.+++|+. .+.+.+++ .+.++|+||..
T Consensus 21 ~~~~~--~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~-~~~l~Dt~G~~ 83 (210)
T 1pui_A 21 LPSDT--GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD-GKRLVDLPGYG 83 (210)
T ss_dssp SSCSC--SEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET-TEEEEECCCCC
T ss_pred CCCCC--CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC-CEEEEECcCCc
Confidence 77888 99999999999999999999999872 34455666653 34555555 67778999875
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.38 E-value=1.8e-13 Score=109.80 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=26.0
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
.++++ |++++|+||||||||||+|+|+|+.+
T Consensus 15 ~~i~~--Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAV--GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----C--CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCC--CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57888 99999999999999999999999885
No 80
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.37 E-value=3.6e-12 Score=106.80 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=71.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC--cch---HHHHHHHH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG--KGR---GRQVIAVA 124 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~---~~~~~~~~ 124 (225)
-.++|+|.+|||||||+|.|+|....++++|++|.+...+.+.+.+..+.++|+||........ ... ........
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 4799999999999999999999988899999999999999999999999999999987643211 111 11222334
Q ss_pred hCCCeEEEEeeCCCc
Q psy2924 125 RTCSLIFIVLDVLKP 139 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~ 139 (225)
..+|++++++|....
T Consensus 84 ~~~d~ii~VvD~~~~ 98 (274)
T 3i8s_A 84 GDADLLINVVDASNL 98 (274)
T ss_dssp TCCSEEEEEEEGGGH
T ss_pred cCCCEEEEEecCCCh
Confidence 789999999998754
No 81
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.37 E-value=1.8e-12 Score=113.09 Aligned_cols=88 Identities=33% Similarity=0.614 Sum_probs=75.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc---------------------CceEEEEeCCCCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK---------------------GAKIQLLDLPGIIEG 109 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~---------------------g~~i~~~d~~g~~~~ 109 (225)
.++|+|+||||||||+|+|++....+++||+||.+|..|.+.+. +..+.++|+||+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 58999999999999999999987678999999999999987653 356899999999876
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
+..+.++..++...++.+|++++++|...
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 65555666778888899999999998764
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.36 E-value=3.4e-14 Score=114.70 Aligned_cols=127 Identities=12% Similarity=0.034 Sum_probs=69.2
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHH
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAV 123 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 123 (225)
+.+ |++++|+||||||||||+++|+|+ .| ++|.|.. .++. .+.. ..+..+++++|..
T Consensus 19 i~~--Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----------~~G~I~~--~~~~-~~~~----~~~~~ig~v~q~~-- 75 (208)
T 3b85_A 19 IDT--NTIVFGLGPAGSGKTYLAMAKAVQ-AL-----------QSKQVSR--IILT-RPAV----EAGEKLGFLPGTL-- 75 (208)
T ss_dssp HHH--CSEEEEECCTTSSTTHHHHHHHHH-HH-----------HTTSCSE--EEEE-ECSC----CTTCCCCSSCC----
T ss_pred ccC--CCEEEEECCCCCCHHHHHHHHhcC-CC-----------cCCeeee--EEec-CCch----hhhcceEEecCCH--
Confidence 367 999999999999999999999999 88 8888832 2222 1111 1122344443322
Q ss_pred HhCC-CeEEEEeeCCCccccHHHHHHHHHhccc----------ccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc--CC
Q psy2924 124 ARTC-SLIFIVLDVLKPLGHKKLIEHELEGFGL----------RLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH--NA 190 (225)
Q Consensus 124 ~~~~-~~~l~~~d~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~--~~ 190 (225)
.++. .+.....+........+.+.++++. ++ .+...+..+.+||||++ .+..+.+.+.++ +.
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~ 150 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGS 150 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCC
Confidence 0110 0000000000000112345555554 43 14456677889999999 566666666655 33
Q ss_pred eEEEeecC
Q psy2924 191 DITLRYDA 198 (225)
Q Consensus 191 ~vi~~~~~ 198 (225)
+|+++|+.
T Consensus 151 tiivtHd~ 158 (208)
T 3b85_A 151 KMVVTGDI 158 (208)
T ss_dssp EEEEEEC-
T ss_pred EEEEECCH
Confidence 45577764
No 83
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.35 E-value=4.6e-12 Score=98.41 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=71.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~ 126 (225)
+..++|+|+||||||||+|.+++... .++++|+||++...+.+.+++..+.++|+||.......... ...+....++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999875 47889999999989999999999999999997642111000 01122345688
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 84 ad~~i~v~D~~~~ 96 (172)
T 2gj8_A 84 ADRVLFMVDGTTT 96 (172)
T ss_dssp CSEEEEEEETTTC
T ss_pred CCEEEEEEECCCC
Confidence 9999999998654
No 84
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.35 E-value=1.3e-12 Score=109.54 Aligned_cols=90 Identities=21% Similarity=0.346 Sum_probs=68.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVARTC 127 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~ 127 (225)
...++|+|+||||||||+|.++|....+++||++|.++..|.+.. +..+.++|+||.......... .+.........+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 347999999999999999999998878999999999988888866 888999999998654322110 111111122468
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
|++++++|....
T Consensus 82 d~vi~V~D~t~~ 93 (272)
T 3b1v_A 82 DSILNVVDATNL 93 (272)
T ss_dssp SEEEEEEEGGGH
T ss_pred CEEEEEecCCch
Confidence 999999998654
No 85
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.34 E-value=1.5e-11 Score=94.54 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=63.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~~ 128 (225)
..++|+|++|||||||+|.++|....++.+|++|++...+.+.+++..+.++|+||.......... ..........+++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPD 83 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCC
Confidence 479999999999999999999987778889999999889999999999999999997653221100 0111111224789
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
+++.++|....
T Consensus 84 ~~i~v~D~~~~ 94 (165)
T 2wji_A 84 LVVNIVDATAL 94 (165)
T ss_dssp EEEEEEETTCH
T ss_pred EEEEEecCCch
Confidence 99999998753
No 86
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=100.77 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=69.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccc--cceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHH----HH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE--FTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQV----IA 122 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~--~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~----~~ 122 (225)
.-.|+|+|++|||||||+|+|+|.....+.+| ++|.++..+.+.+++..+.++||||+.............+ ..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 45799999999999999999999888777777 7788888888999999999999999875433222222222 22
Q ss_pred HHhCCCeEEEEeeCCCc-cccHHHHHHHHHhc
Q psy2924 123 VARTCSLIFIVLDVLKP-LGHKKLIEHELEGF 153 (225)
Q Consensus 123 ~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~ 153 (225)
..+.+++++++++.... ......+..+++.+
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~ 140 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKATEKILKMF 140 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 33567899999987533 22234444554443
No 87
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.28 E-value=2e-11 Score=101.83 Aligned_cols=90 Identities=22% Similarity=0.379 Sum_probs=71.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~~ 128 (225)
..++|+|++|||||||+|+|+|....++++|++|.+...+.+.+++..+.++|+||.......... ...+......++|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 469999999999999999999998889999999999999999999999999999998753322111 1122222336799
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|....
T Consensus 84 ~vi~v~D~~~~ 94 (271)
T 3k53_A 84 VIVDIVDSTCL 94 (271)
T ss_dssp EEEEEEEGGGH
T ss_pred EEEEEecCCcc
Confidence 99999998754
No 88
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.28 E-value=3.1e-11 Score=100.29 Aligned_cols=91 Identities=27% Similarity=0.471 Sum_probs=71.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~~ 128 (225)
-.++|+|.+|||||||+|.++|....++++|++|.+...|.+.+.+..+.++|+||.......... .+.........++
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 85 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDAD 85 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCC
Confidence 469999999999999999999988889999999999999999998999999999998654322111 1111112225799
Q ss_pred eEEEEeeCCCcc
Q psy2924 129 LIFIVLDVLKPL 140 (225)
Q Consensus 129 ~~l~~~d~~~~~ 140 (225)
++++++|.....
T Consensus 86 ~ii~V~D~t~~~ 97 (258)
T 3a1s_A 86 LVILVADSVNPE 97 (258)
T ss_dssp EEEEEEETTSCH
T ss_pred EEEEEeCCCchh
Confidence 999999987643
No 89
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.28 E-value=1.4e-11 Score=111.09 Aligned_cols=91 Identities=26% Similarity=0.316 Sum_probs=74.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCC-CCccCCcch-HHHHHHHHh
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII-EGAKDGKGR-GRQVIAVAR 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~~-~~~~~~~~~ 125 (225)
+-.|+|+|++|||||||+|.|++... .++++|+||+++..+.+.++|.++.++||||+. ........+ .......++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 57899999999999999999999865 589999999999999999999999999999987 432221111 233455678
Q ss_pred CCCeEEEEeeCCCc
Q psy2924 126 TCSLIFIVLDVLKP 139 (225)
Q Consensus 126 ~~~~~l~~~d~~~~ 139 (225)
.+|++++++|...+
T Consensus 323 ~aD~vl~VvD~s~~ 336 (482)
T 1xzp_A 323 KADIVLFVLDASSP 336 (482)
T ss_dssp HCSEEEEEEETTSC
T ss_pred cccEEEEEecCCCC
Confidence 89999999998654
No 90
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.26 E-value=5.9e-12 Score=113.34 Aligned_cols=156 Identities=17% Similarity=0.085 Sum_probs=76.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~ 126 (225)
+-.|+|+|++|||||||+|.|++... .++++|+||++.....+.++|.++.++||||+......... .+......+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 66799999999999999999999864 68999999999999999999999999999998652211000 01122334578
Q ss_pred CCeEEEEeeCCCcccc--HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc-CCeEEEee---cCCh
Q psy2924 127 CSLIFIVLDVLKPLGH--KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH-NADITLRY---DATS 200 (225)
Q Consensus 127 ~~~~l~~~d~~~~~~~--~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~-~~~vi~~~---~~~~ 200 (225)
+|++++++|...+... .+...++++.+. ..+.+.+-++.+-.+...... +.+... ...++.+| +.++
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBSH
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCCH
Confidence 9999999998765321 223334444432 334444444444333222111 112221 12334334 4578
Q ss_pred HHHHHHHhccc
Q psy2924 201 DDLIDVVEGNR 211 (225)
Q Consensus 201 ~~~~~~~~~~~ 211 (225)
+++.+.+...+
T Consensus 386 ~eL~~~i~~~~ 396 (476)
T 3gee_A 386 DTLKQHMGDLV 396 (476)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 88877765444
No 91
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.26 E-value=2.7e-11 Score=99.95 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=63.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcccccccc--ceeeccceEEEEcCceEEEEeCCCCCCCccCC-cchHHHHHH---
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEF--TTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG-KGRGRQVIA--- 122 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~--tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~--- 122 (225)
.-.|+|+|++|||||||+|.|+|.....+.+++ +|+.+..+.+.+++..+.++||||+....... ..+......
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999998875555544 78888889999999999999999986432211 111122222
Q ss_pred -HHhCCCeEEEEeeCCC
Q psy2924 123 -VARTCSLIFIVLDVLK 138 (225)
Q Consensus 123 -~~~~~~~~l~~~d~~~ 138 (225)
..+.++++++++|...
T Consensus 101 ~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHTTCCSEEEEEEETTB
T ss_pred hcCCCCCEEEEEEeCCC
Confidence 2378999999999764
No 92
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.25 E-value=6.8e-12 Score=116.11 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=78.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.++|+|+||||||||+++|+|+..| +.+|.|.++|.++.....+... ..+..+++++|. ..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P----------~~sG~vt~~g~~i~~~~~~~~~-~~~~~i~~v~Q~------~~-- 107 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP----------RGSGIVTRCPLVLKLKKLVNED-KWRGKVSYQDYE------IE-- 107 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-----------------CCCSCEEEEEEECSSSS-CCEEEESCC---------CC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC----------CCCCeEEEcCEEEEEecCCccc-cceeEEeeeccc------cc--
Confidence 3999999999999999999999765 1589999999998765543211 112223333332 10
Q ss_pred EEEeeCCCccccHHHHHHHHHhccc--------------ccCCCCCcccccCC------CCCCCHHHHHHHHHHhhhcC-
Q psy2924 131 FIVLDVLKPLGHKKLIEHELEGFGL--------------RLNKEPPNIDNQVP------QSELDLDTVKTILSEYRIHN- 189 (225)
Q Consensus 131 l~~~d~~~~~~~~~~~~~~l~~~~l--------------~~~~~~~~lslDEp------~~~LD~~~~~~i~~~l~~~~- 189 (225)
........+.+......++. .....+..+.+||| |+++|+.....+.+.+..+.
T Consensus 108 -----l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~ 182 (608)
T 3szr_A 108 -----ISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ 182 (608)
T ss_dssp -----CCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT
T ss_pred -----CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh
Confidence 00000001111111111111 01123445569999 99999988888888877742
Q ss_pred C--e---EEEeecCC--hHHHHHHHhcccc-ccceEEeccCCCC
Q psy2924 190 A--D---ITLRYDAT--SDDLIDVVEGNRI-YVPCIYLLNKIGE 225 (225)
Q Consensus 190 ~--~---vi~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~ 225 (225)
. . ++++|+.. ..+...++..... ..+++.+.+|+|+
T Consensus 183 ~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 183 RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 1 1 33344322 1133333332222 2578888888874
No 93
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.23 E-value=6.8e-11 Score=93.25 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=61.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE--EEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ--LLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-+++|+|+||||||||+++++|...+....|..+.+...|.+.++|.++. ++|++|..... .+. ...++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~---~~~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----AIT---SAYYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----CCC---HHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----hhh---HHHhhcC
Confidence 47999999999999999999998876555555566667899999998764 48988764321 121 2345677
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+.++.++|....
T Consensus 103 ~~~i~v~d~~~~ 114 (191)
T 1oix_A 103 VGALLVYDIAKH 114 (191)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 888888887653
No 94
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.23 E-value=7.7e-11 Score=91.88 Aligned_cols=89 Identities=24% Similarity=0.402 Sum_probs=67.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc-hHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG-RGRQVIAVARTCS 128 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~~ 128 (225)
..++|+|++|||||||+|.+++....++.+|++|.+...+.+.+++..+.++|+||.......... ...........++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPD 87 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCC
Confidence 479999999999999999999987778889999999999999999999999999997653211100 0111111114588
Q ss_pred eEEEEeeCCC
Q psy2924 129 LIFIVLDVLK 138 (225)
Q Consensus 129 ~~l~~~d~~~ 138 (225)
+++.++|...
T Consensus 88 ~~i~v~d~~~ 97 (188)
T 2wjg_A 88 LVVNIVDATA 97 (188)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEEecchh
Confidence 8888888764
No 95
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.22 E-value=1.8e-11 Score=107.76 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.9
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+.+-+..++++|++.+ | +++|+|+||||||||+++|.++..
T Consensus 45 i~nf~~l~~v~l~~~~--G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 45 IRNLATITQLELELGG--G-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEETTEEEEEEECCS--S-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred hccccceeeEEEecCC--C-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444567889999999 9 999999999999999999977654
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.22 E-value=2.1e-11 Score=103.70 Aligned_cols=48 Identities=23% Similarity=0.154 Sum_probs=43.2
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
..++|++.+ |++++|+||||||||||+++|+|++.+ ..|.|.+.+.++
T Consensus 91 ~~l~~~~~~--g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~g~V~l~g~d~ 138 (302)
T 3b9q_A 91 TELQLGFRK--PAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGDT 138 (302)
T ss_dssp CSCCCCSSS--CEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCCC
T ss_pred cccccccCC--CcEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeecc
Confidence 468898999 999999999999999999999999988 789998887654
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.22 E-value=3e-11 Score=100.67 Aligned_cols=48 Identities=19% Similarity=0.019 Sum_probs=40.7
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeecc-ceEEEEcCceE
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV-PGCIKYKGAKI 98 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~-~G~i~~~g~~i 98 (225)
..++++ +.+ |+.++|+||||||||||+++|+|++.| . +|.|.+.+.++
T Consensus 16 vl~~i~--i~~--g~~v~i~Gp~GsGKSTll~~l~g~~~~-----------~~~G~I~~~g~~i 64 (261)
T 2eyu_A 16 KVLELC--HRK--MGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPI 64 (261)
T ss_dssp HHHHGG--GCS--SEEEEEECSTTCSHHHHHHHHHHHHHH-----------HCCCEEEEEESSC
T ss_pred HHHHHh--hCC--CCEEEEECCCCccHHHHHHHHHHhCCC-----------CCCCEEEEcCCcc
Confidence 344555 777 999999999999999999999999887 6 89998877654
No 98
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.18 E-value=2e-10 Score=110.29 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=27.5
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHH
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLL 66 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLl 66 (225)
..+++||+++. |++++|+|+||||||||+
T Consensus 599 ~Lk~Vsl~I~~--Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPL--GVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEES--SSEEEEECSTTSSHHHHH
T ss_pred cccccceEEcC--CcEEEEEccCCCChhhhH
Confidence 47899999999 999999999999999997
No 99
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.18 E-value=4.7e-11 Score=102.69 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=43.1
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~ 97 (225)
.++++|.+.+ |+.++|+||||||||||+|+|+|++.| ..|.|.++|.+
T Consensus 161 l~~l~~~i~~--g~~v~i~G~~GsGKTTll~~l~g~~~~-----------~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAI--GKNVIVCGGTGSGKTTYIKSIMEFIPK-----------EERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHH--TCCEEEEESTTSCHHHHHHHGGGGSCT-----------TSCEEEEESSC
T ss_pred HhhhhhhccC--CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCcEEEECCee
Confidence 3467888889 999999999999999999999999988 89999998764
No 100
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.17 E-value=1.1e-11 Score=118.07 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHH-HhCCC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLST-LAGVY 73 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~-l~g~~ 73 (225)
..+++||+|+. |++++|+|+||||||||++. |+|+.
T Consensus 512 ~L~~vsl~i~~--Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPL--GVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEES--SSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcC--CCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 46788999999 99999999999999999997 77654
No 101
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.17 E-value=5.2e-11 Score=106.54 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=66.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 127 (225)
..|+|+|++|||||||+|.|+|... .+.++|++|++...+.+.+.+..+.++||||+...... ...+..+....++.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 103 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 103 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence 4799999999999999999999765 47889999999999999889999999999997632111 112334556677889
Q ss_pred CeEEEEeeCCCcc-ccHHHHHHHHHh
Q psy2924 128 SLIFIVLDVLKPL-GHKKLIEHELEG 152 (225)
Q Consensus 128 ~~~l~~~d~~~~~-~~~~~~~~~l~~ 152 (225)
|++++++|..... .....+.+.+..
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~ 129 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYR 129 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9999999987542 223445555554
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.16 E-value=6.8e-12 Score=98.71 Aligned_cols=50 Identities=4% Similarity=-0.159 Sum_probs=38.4
Q ss_pred CCCcccccC--CCCCCCHHHHHHHHHHhhhcCCe-EEEee-cCChHHHHHHHhc
Q psy2924 160 EPPNIDNQV--PQSELDLDTVKTILSEYRIHNAD-ITLRY-DATSDDLIDVVEG 209 (225)
Q Consensus 160 ~~~~lslDE--p~~~LD~~~~~~i~~~l~~~~~~-vi~~~-~~~~~~~~~~~~~ 209 (225)
.+..+.+|| |++++|+...+.+.+.+...... ++++| +|..+.+..+.+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 577888999 99999999999999999886553 55665 5666666665553
No 103
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.16 E-value=1.7e-10 Score=102.66 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=64.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC--Ccc--hHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD--GKG--RGRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~--~~~--~~~~~~~~ 123 (225)
...++|+|.+|||||||+|.++|... .++++|+||++.....+.++|..+.++||||.+..... .+. ........
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 45899999999999999999999876 48999999999999999999999999999998654331 111 12223346
Q ss_pred HhCCCeEEEEeeCCCc
Q psy2924 124 ARTCSLIFIVLDVLKP 139 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~ 139 (225)
+..++++++++|+...
T Consensus 255 ~~~ad~~llv~D~~~~ 270 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEG 270 (436)
T ss_dssp HHHCSEEEEEEETTTC
T ss_pred HHhCCEEEEEEcCCcC
Confidence 6789999999998764
No 104
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.16 E-value=5.4e-11 Score=103.32 Aligned_cols=48 Identities=23% Similarity=0.154 Sum_probs=43.1
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
..++|++.+ |++++|+||||||||||+++|+|++.+ ..|.|.+.+.++
T Consensus 148 ~~l~l~~~~--g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~G~V~l~g~D~ 195 (359)
T 2og2_A 148 TELQLGFRK--PAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGDT 195 (359)
T ss_dssp CSCCCCSSS--SEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCCC
T ss_pred CCcceecCC--CeEEEEEcCCCChHHHHHHHHHhhccc-----------cCCEEEEecccc
Confidence 468898989 999999999999999999999999987 788998887654
No 105
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.15 E-value=2.8e-10 Score=101.84 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=68.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC----CcchHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD----GKGRGRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~----~~~~~~~~~~~ 123 (225)
...++++|.+|+|||||+|.+++... .++++|+||++.....+.+++..+.++||||++..... ...........
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 56899999999999999999999864 68999999999999999999999999999998754322 11222233456
Q ss_pred HhCCCeEEEEeeCCCc
Q psy2924 124 ARTCSLIFIVLDVLKP 139 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~ 139 (225)
++.++++++++|....
T Consensus 275 ~~~ad~~llviD~~~~ 290 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEG 290 (456)
T ss_dssp HHHCSEEEEEEETTTC
T ss_pred HhhCCEEEEEEeCCCC
Confidence 7889999999998764
No 106
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.15 E-value=4.8e-12 Score=105.95 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
.++|+||||||||||+|+|+|+..| ++|.+.++|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-----------~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-----------RKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccccCCccc
Confidence 5899999999999999999999988 889998888754
No 107
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.15 E-value=2.4e-10 Score=91.68 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=96.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEE-EcCceEEEEeCCCCCCCccCCc------chHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIK-YKGAKIQLLDLPGIIEGAKDGK------GRGRQ 119 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~-~~g~~i~~~d~~g~~~~~~~~~------~~~~~ 119 (225)
...++|+|.+|||||||+|.|++.. ..++.++++|++.....+. ..+..+.++|+||+........ .+..+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4579999999999999999999986 3678899999877655554 4567899999999754321111 01112
Q ss_pred HHHHHhCCCeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHH----HHHHHHhhhc------
Q psy2924 120 VIAVARTCSLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTV----KTILSEYRIH------ 188 (225)
Q Consensus 120 ~~~~~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~----~~i~~~l~~~------ 188 (225)
.......++++++++|....... ...+.+.+.. ...+.+.+-++.+.++.... +.+.+.+...
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 22222336778899998754221 2223333433 23456666666666665543 3333344332
Q ss_pred -CCeEEEee---cCChHHHHHHHhccc
Q psy2924 189 -NADITLRY---DATSDDLIDVVEGNR 211 (225)
Q Consensus 189 -~~~vi~~~---~~~~~~~~~~~~~~~ 211 (225)
...++.+| +.+++++.+.+...+
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 22355445 357888877765443
No 108
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.15 E-value=2.6e-10 Score=90.16 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=57.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE--EEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI--QLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|+||||||||+++++|...+....|..+.+...|.+.++|.++ .++|++|...... . ....++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~-----~~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--I-----TSAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--C-----CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--h-----hHHHHhcC
Confidence 3699999999999999999999875443344444566788999999754 5679987543211 1 12345678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 79 ~~~i~v~d~~~~ 90 (199)
T 2f9l_A 79 VGALLVYDIAKH 90 (199)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 888888887653
No 109
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.13 E-value=4.6e-11 Score=106.29 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=62.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccC-CcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD-GKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 127 (225)
..|+|+|++|||||||+|.|+|... .+.++|++|++...+.+.+++..+.++||+|....... ...+..+....+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 3699999999999999999999765 47899999999999999999999999999997532111 012334455677889
Q ss_pred CeEEEEeeCCCccc-cHHHHHHHHHh
Q psy2924 128 SLIFIVLDVLKPLG-HKKLIEHELEG 152 (225)
Q Consensus 128 ~~~l~~~d~~~~~~-~~~~~~~~l~~ 152 (225)
|++++++|+..... ....+.+.+..
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~ 109 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYR 109 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999876422 23344455544
No 110
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=103.40 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=79.9
Q ss_pred CCCCCceeeccCCee--EEEEcCCCCCHHHHHHHHhCCCc---cccc-cccceeeccceEEEEcC---ceEEEEeCCCCC
Q psy2924 37 GPGEGFDVAKTGDAR--IGFVGFPSVGKSTLLSTLAGVYS---EVAA-YEFTTLTTVPGCIKYKG---AKIQLLDLPGII 107 (225)
Q Consensus 37 ~~~is~~i~~~~g~~--v~IiG~nGaGKSTLln~l~g~~~---~v~~-~~~tt~~~~~G~i~~~g---~~i~~~d~~g~~ 107 (225)
.+++||++.+ |++ ++|+|+||||||||+|+|+|... ++.. .|.+++. .-|.+.-.. ..++..|++++.
T Consensus 30 L~~vsl~i~~--Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 30 DQLVNKSVSQ--GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp HHHHHHSCC---CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCC
T ss_pred cCCCceEecC--CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhh
Confidence 6678999999 999 99999999999999999999852 2221 2333333 122222221 156778888765
Q ss_pred CCccCCc------c-hHHHHHHHHh-------------CC--C-eEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcc
Q psy2924 108 EGAKDGK------G-RGRQVIAVAR-------------TC--S-LIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNI 164 (225)
Q Consensus 108 ~~~~~~~------~-~~~~~~~~~~-------------~~--~-~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~l 164 (225)
....... . +..++...+. +. + ++.++.+........+ .++++.+. ..++.+
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~----~~~~vI 180 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD----SKVNII 180 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC----SCSEEE
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh----hCCCEE
Confidence 4211100 0 1112211111 11 1 2455555543322111 34455542 356778
Q ss_pred cccCCCCCCCHHHHHHHHHHhhh
Q psy2924 165 DNQVPQSELDLDTVKTILSEYRI 187 (225)
Q Consensus 165 slDEp~~~LD~~~~~~i~~~l~~ 187 (225)
.+++|++.|.+.....+.+.+..
T Consensus 181 ~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 181 PIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEcchhccchHHHHHHHHHHHH
Confidence 89999999999888777777664
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.13 E-value=4.3e-10 Score=85.07 Aligned_cols=102 Identities=24% Similarity=0.250 Sum_probs=66.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.++++|++|||||||++.+.+... .+..++++|.+.....+.+++..+.++|+||..........+.......++.+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 82 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEV 82 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCE
Confidence 689999999999999999998764 4678889998888888888999999999999764322111123334556788999
Q ss_pred EEEEeeCCCccc-cHHHHHHHHHh
Q psy2924 130 IFIVLDVLKPLG-HKKLIEHELEG 152 (225)
Q Consensus 130 ~l~~~d~~~~~~-~~~~~~~~l~~ 152 (225)
+++++|...... ....+.+.+..
T Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~ 106 (161)
T 2dyk_A 83 VLFAVDGRAELTQADYEVAEYLRR 106 (161)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCcccHhHHHHHHHHHh
Confidence 999999876422 22334444444
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.12 E-value=7.9e-11 Score=94.88 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=27.4
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
-+++ |++++|+||||||||||+++|+|...+
T Consensus 21 gi~~--G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIET--QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEES--SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCC--CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4778 999999999999999999999996543
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.10 E-value=4.9e-09 Score=84.69 Aligned_cols=91 Identities=26% Similarity=0.460 Sum_probs=64.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch--HHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR--GRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~~~ 126 (225)
...|+|+|++|||||||+|.+++....+.+++++|++...+.+.+.+..+.++|+||........... .......+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 46899999999999999999999876678899999988888888888899999999985432211111 1112233567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 109 ~d~~i~v~d~~~~ 121 (228)
T 2qu8_A 109 NGVILFIIDISEQ 121 (228)
T ss_dssp SEEEEEEEETTCT
T ss_pred ccEEEEEEecccc
Confidence 7889999998754
No 114
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.10 E-value=1.2e-11 Score=95.62 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=44.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
+.+++||++.+ |++++|+||||||||||+++|+|+. | .+|.|.++|.++.
T Consensus 22 ~l~~vsl~i~~--Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----------~~G~V~~~g~~i~ 71 (158)
T 1htw_A 22 AEILLKLHTEK--AIMVYLNGDLGAGKTTLTRGMLQGI-G-----------HQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHCCSS--CEEEEEECSTTSSHHHHHHHHHHHT-T-----------CCSCCCCCTTTCE
T ss_pred HHhccccccCC--CCEEEEECCCCCCHHHHHHHHHHhC-C-----------CCCeEEECCEeee
Confidence 45678999999 9999999999999999999999998 8 7888888887653
No 115
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.10 E-value=1.8e-11 Score=111.47 Aligned_cols=141 Identities=12% Similarity=-0.009 Sum_probs=84.2
Q ss_pred CCCCCCCCCc-eeeccCCeeEEEEcCCCCCHHHHHHH--HhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 33 GGGGGPGEGF-DVAKTGDARIGFVGFPSVGKSTLLST--LAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 33 ~~~~~~~is~-~i~~~~g~~v~IiG~nGaGKSTLln~--l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
+..+.++++| .+++ |++++|+||||||||||+++ ++|+.+| ..|.+.+++.+.. .+ . ..
T Consensus 24 g~~~Ld~i~~G~i~~--Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----------~~g~i~v~g~~~~-~~---~-~~ 85 (525)
T 1tf7_A 24 MIEGFDDISHGGLPI--GRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----------DEPGVFVTFEETP-QD---I-IK 85 (525)
T ss_dssp CCTTHHHHTTSSEET--TSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESSSCH-HH---H-HH
T ss_pred CchhHHHhcCCCCCC--CeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEEEEeCCH-HH---H-HH
Confidence 4557889999 9999 99999999999999999999 6899887 7899999887521 00 0 11
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCCcc------cc---HHHHHHHHHhcccccCCCCCcccccCCCCC-----CCH
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPL------GH---KKLIEHELEGFGLRLNKEPPNIDNQVPQSE-----LDL 175 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~------~~---~~~~~~~l~~~~l~~~~~~~~lslDEp~~~-----LD~ 175 (225)
....++++.|...... .+.. .+..... .. .+........+. ...+..+.+|||++. +|+
T Consensus 86 ~~~~~g~~~q~~~~~~--~l~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS---~g~~~~lilDe~t~~~~~~~lD~ 158 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEG--KLFI--LDASPDPEGQEVVGGFDLSALIERINYAIQ---KYRARRVSIDSVTSVFQQYDASS 158 (525)
T ss_dssp HHGGGTCCHHHHHHTT--SEEE--EECCCCSSCCSCCSSHHHHHHHHHHHHHHH---HHTCSEEEEECSTTTSTTTCCHH
T ss_pred HHHHcCCChHHhhccC--cEEE--EecCcccchhhhhcccCHHHHHHHHHHHHH---HcCCCEEEECCHHHHHHhcCCHH
Confidence 1223455566543221 1221 1111100 00 111111111110 113456779999974 588
Q ss_pred HHHHHHHHHhhhc---CCe-EEEeecC
Q psy2924 176 DTVKTILSEYRIH---NAD-ITLRYDA 198 (225)
Q Consensus 176 ~~~~~i~~~l~~~---~~~-vi~~~~~ 198 (225)
..++.+++.+..+ +.+ ++++|+.
T Consensus 159 ~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 159 VVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 8887777777654 345 4455553
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.09 E-value=3.7e-12 Score=104.07 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=25.9
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHh--CC
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLA--GV 72 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~--g~ 72 (225)
.+++ |++++|+||||||||||+++|+ |+
T Consensus 26 gi~~--G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPE--GTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEET--TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCC--CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5788 9999999999999999999999 55
No 117
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.09 E-value=2.5e-09 Score=82.96 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=87.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++... ...++.|+.+.....+.+++.. +.++|+||...... + ....+..+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----M---RDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT----T---HHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH----H---HHHHHhcC
Confidence 4699999999999999999997653 5677788777667777788866 56699999543221 1 23455678
Q ss_pred CeEEEEeeCCCccccHHHHHHHHHhccc-ccCCCCCccc----ccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---cCC
Q psy2924 128 SLIFIVLDVLKPLGHKKLIEHELEGFGL-RLNKEPPNID----NQVPQSELDLDTVKTILSEYRIHNADITLRY---DAT 199 (225)
Q Consensus 128 ~~~l~~~d~~~~~~~~~~~~~~l~~~~l-~~~~~~~~ls----lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~~~ 199 (225)
+++++++|...+.. .+.+...+..+.- ......+.+. .|.+.........+.+.+.+ +..++.+| +.+
T Consensus 77 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 77 EGFLCVFAINNTKS-FEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY---GIPFIETSAKTRQG 152 (189)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH---TCCEEECCTTTCTT
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc---CCeEEEEeCCCCCC
Confidence 99999998876421 1122222222111 1122344444 45444444444444444433 33444334 467
Q ss_pred hHHHHHHHhc
Q psy2924 200 SDDLIDVVEG 209 (225)
Q Consensus 200 ~~~~~~~~~~ 209 (225)
+++++..+..
T Consensus 153 i~~l~~~l~~ 162 (189)
T 4dsu_A 153 VDDAFYTLVR 162 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 118
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.08 E-value=5e-11 Score=106.91 Aligned_cols=91 Identities=26% Similarity=0.322 Sum_probs=63.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcch-HHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR-GRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~ 126 (225)
|-.++|+|++|||||||+|.|++... .++++|+||++.....+.++|.++.++||||+.......... .......+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 66799999999999999999999755 588899999999999999999999999999986422110000 1222334567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
+|++++++|...+
T Consensus 304 aD~vl~VvD~s~~ 316 (462)
T 3geh_A 304 ADLVLLTIDAATG 316 (462)
T ss_dssp CSEEEEEEETTTC
T ss_pred CCEEEEEeccCCC
Confidence 8999999998765
No 119
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.07 E-value=2.2e-10 Score=99.17 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=44.0
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~ 97 (225)
+.++.+++ |.|.+ |++++|+|+||||||||+++|+|+..+ +.|.+.+.|++
T Consensus 58 g~~ald~l-l~i~~--Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----------~~g~i~~~G~~ 108 (347)
T 2obl_A 58 GVRAIDGL-LTCGI--GQRIGIFAGSGVGKSTLLGMICNGASA-----------DIIVLALIGER 108 (347)
T ss_dssp SCHHHHHH-SCEET--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCC
T ss_pred CCEEEEee-eeecC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CEEEEEEeccc
Confidence 34466778 99999 999999999999999999999999887 78888777643
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.07 E-value=2.4e-09 Score=84.13 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG 115 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 115 (225)
..+++++.... . .++++|++|||||||++.+++-... .+ .+|..+..+.+.+++..+.++|+||.......
T Consensus 13 ~l~~~~~~~~~--~-ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--- 83 (190)
T 1m2o_B 13 VLASLGLWNKH--G-KLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARRL--- 83 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTTS---
T ss_pred HHHHhhccCCc--c-EEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHHH---
Confidence 34567777665 4 7999999999999999999975432 22 23445567888999999999999997542211
Q ss_pred hHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 116 RGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
....+++++++++++|...+
T Consensus 84 ----~~~~~~~~d~~i~v~d~~~~ 103 (190)
T 1m2o_B 84 ----WKDYFPEVNGIVFLVDAADP 103 (190)
T ss_dssp ----GGGGCTTCCEEEEEEETTCG
T ss_pred ----HHHHHhcCCEEEEEEECCCh
Confidence 12235688999999998765
No 121
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.06 E-value=1.2e-09 Score=90.08 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=66.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc-cccccc-ceeeccceEEEEcCceEEEEeCCCCCCCccCCcch----HHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE-VAAYEF-TTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGR----GRQVIA 122 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~-v~~~~~-tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~ 122 (225)
.-.|+|+|++|||||||+|.|+|.... .+..|. +|++...+.+.+++..+.++||||+.........+ ......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999997743 333454 68888888889999999999999986543221111 122233
Q ss_pred HHhCCCeEEEEeeCCC
Q psy2924 123 VARTCSLIFIVLDVLK 138 (225)
Q Consensus 123 ~~~~~~~~l~~~d~~~ 138 (225)
.++.++++++++|...
T Consensus 102 ~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC
Confidence 5678999999999864
No 122
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.05 E-value=8.9e-10 Score=105.94 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHh
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLA 70 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~ 70 (225)
..+++||+|+. |++++|+|+||||||||++.|+
T Consensus 657 ~Lk~Vsl~I~~--GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPL--GVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEES--SSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECC--CCEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999 9999999999999999999964
No 123
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.04 E-value=3.4e-10 Score=91.82 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=61.5
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHH
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIA 122 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 122 (225)
..++ |+.++|+||||||||||+++|+|..+|. +..|.+.+.+++.. ++ ...++++.+|...
T Consensus 12 ~~~~--G~ii~l~GpsGsGKSTLlk~L~g~~~p~---------~~~g~v~~ttr~~~----~~----e~~gi~y~fq~~~ 72 (219)
T 1s96_A 12 HMAQ--GTLYIVSAPSGAGKSSLIQALLKTQPLY---------DTQVSVSHTTRQPR----PG----EVHGEHYFFVNHD 72 (219)
T ss_dssp ---C--CCEEEEECCTTSCHHHHHHHHHHHSCTT---------TEEECCCEECSCCC----TT----CCBTTTBEECCHH
T ss_pred cCCC--CcEEEEECCCCCCHHHHHHHHhccCCCC---------ceEEEEEecCCCCC----cc----cccCceEEECCHH
Confidence 3456 9999999999999999999999988630 14555655544321 11 1122233222222
Q ss_pred HHh----CCCeEEEEee-CCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhh
Q psy2924 123 VAR----TCSLIFIVLD-VLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYR 186 (225)
Q Consensus 123 ~~~----~~~~~l~~~d-~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~ 186 (225)
.+. .-.+...+.- +.......+.+.++++. ...+.+| ||+.....+.+.+.
T Consensus 73 ~f~~~~~~~~f~E~~~~~~~~yg~~~~~v~~~l~~--------G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 73 EFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLAT--------GVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHTT--------TCEEEEE-----CCHHHHHHHHHHCT
T ss_pred HHHHHHhcCHHHHHHHHHhccCCCCHHHHHHHHhc--------CCeEEEE-----ECHHHHHHHHHHcc
Confidence 221 1122222211 11111123345555543 3556678 99999999999887
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.04 E-value=2.4e-11 Score=104.78 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+...++++|++.+ |++++|+|+||||||||+|+|+|+..|
T Consensus 42 ~~~l~~i~~~~~~--g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGR--AIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCC--SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCC--CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3456788999999 999999999999999999999976543
No 125
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.04 E-value=4.3e-10 Score=107.84 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHh
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLA 70 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~ 70 (225)
..+++||+|+. |++++|+|+||||||||++.|+
T Consensus 639 ~Lk~Vsl~I~~--Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPL--GTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEES--SSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcC--CCEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999 9999999999999999999964
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.04 E-value=3.8e-10 Score=100.06 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=91.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCc-eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGA-KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
--.++|+|..|+|||||+|.+++... .++++++||.++....+.+.+. .+.++|+||.............+....+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 35799999999999999999999876 5788999999999988988886 899999999876544333445566778889
Q ss_pred CCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhh-cCCeEEEee---cCChHH
Q psy2924 127 CSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRI-HNADITLRY---DATSDD 202 (225)
Q Consensus 127 ~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~-~~~~vi~~~---~~~~~~ 202 (225)
+|++++++|..... ........+... ..+.+.+-++.+-.+.... +..+.+.+ ++..++.+| +.++++
T Consensus 114 aD~vllVvD~~~~~-~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 114 ADCGILVTDSAPTP-YEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFDD 185 (423)
T ss_dssp CSEEEEECSSSCCH-HHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTT
T ss_pred CCEEEEEEeCCChH-HHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 99999999983222 223333344443 3344443333333222111 22333332 233333333 467888
Q ss_pred HHHHHhccc
Q psy2924 203 LIDVVEGNR 211 (225)
Q Consensus 203 ~~~~~~~~~ 211 (225)
+.+.+...+
T Consensus 186 L~~~L~~~l 194 (423)
T 3qq5_A 186 IGKTISEIL 194 (423)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhh
Confidence 887766544
No 127
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.03 E-value=2.5e-09 Score=83.60 Aligned_cols=83 Identities=23% Similarity=0.189 Sum_probs=63.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||..... ......+..+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 47999999999999999999987765555666676666677888874 57888999854321 1123466889
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 90 d~~i~v~d~~~~ 101 (196)
T 3tkl_A 90 HGIIVVYDVTDQ 101 (196)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 128
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.03 E-value=1.1e-10 Score=112.24 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=33.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+...++++|+++. |++++|+|||||||||||+++++..
T Consensus 660 ~~V~ndvsl~~~~--g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 660 QYVPNNTDLSEDS--ERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SSCCEEEEECTTS--CCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred ceecccccccCCC--CeEEEEECCCCCchHHHHHHHHHHH
Confidence 4566788999988 9999999999999999999998653
No 129
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.02 E-value=5.9e-09 Score=82.12 Aligned_cols=82 Identities=22% Similarity=0.182 Sum_probs=62.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.|+|+|++|||||||++.+.+... ...++.|+.+.....+.+++. .+.++|+||.... .......+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh-------HHHHHHHHhhC
Confidence 4799999999999999999997653 466777776666667777775 6788999986432 12234456778
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 87 ~~~i~v~d~~~~ 98 (206)
T 2bov_A 87 EGFLCVFSITEM 98 (206)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998764
No 130
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.01 E-value=1.1e-09 Score=105.54 Aligned_cols=32 Identities=22% Similarity=0.027 Sum_probs=28.5
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHH
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTL 69 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l 69 (225)
..++++|++.. |++++|+||||||||||++++
T Consensus 651 v~ndisl~~~~--g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 651 IPNDVYFEKDK--QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCEEEEEETTT--BCEEEEECCTTSSHHHHHHHH
T ss_pred ecccceeecCC--CeEEEEECCCCCCHHHHHHHH
Confidence 44577788888 999999999999999999999
No 131
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.00 E-value=9.7e-09 Score=78.80 Aligned_cols=151 Identities=9% Similarity=0.050 Sum_probs=83.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||.... .......+..+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHHhcC
Confidence 46999999999999999999976543333344444444566677774 6788999985421 12223456778
Q ss_pred CeEEEEeeCCCccc---cHHHHHHHHHhcccccCCCCCccc----ccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---c
Q psy2924 128 SLIFIVLDVLKPLG---HKKLIEHELEGFGLRLNKEPPNID----NQVPQSELDLDTVKTILSEYRIHNADITLRY---D 197 (225)
Q Consensus 128 ~~~l~~~d~~~~~~---~~~~~~~~l~~~~l~~~~~~~~ls----lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~ 197 (225)
+++++++|...... ...+..++............+.+. .|-+...........+.+. .....++.+| +
T Consensus 81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD--NGDYPYFETSAKDA 158 (177)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH--TTCCCEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh--cCCceEEEEeCCCC
Confidence 99999999876421 112223332222111113344444 3433223344433333332 1223344444 4
Q ss_pred CChHHHHHHHhc
Q psy2924 198 ATSDDLIDVVEG 209 (225)
Q Consensus 198 ~~~~~~~~~~~~ 209 (225)
.++++++..+..
T Consensus 159 ~gi~~l~~~l~~ 170 (177)
T 1wms_A 159 TNVAAAFEEAVR 170 (177)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 578887766543
No 132
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.00 E-value=5.5e-09 Score=80.68 Aligned_cols=82 Identities=22% Similarity=0.182 Sum_probs=61.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.|+|+|++|||||||+|.+.+... ...++.|+.......+.+++. .+.++|+||.... .......+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc-------HHHHHHHhccC
Confidence 5799999999999999999997653 456777776656666777775 5788999986431 12234556789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 91 d~~i~v~d~~~~ 102 (187)
T 2a9k_A 91 EGFLCVFSITEM 102 (187)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998754
No 133
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.99 E-value=1.4e-08 Score=78.01 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=65.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
...++|+|++|||||||++.+++.......+|.+|.+.....+.+++..+.++|+||........ ...+..++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR-------ARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC-------CSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH-------HHHHhhCC
Confidence 56899999999999999999999776666677777777777888999999999999965432211 12245688
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|....
T Consensus 81 ~~i~v~d~~~~ 91 (178)
T 2lkc_A 81 IVILVVAADDG 91 (178)
T ss_dssp EEEEEEETTCC
T ss_pred EEEEEEECCCC
Confidence 89999887653
No 134
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.99 E-value=6.5e-10 Score=99.04 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=44.3
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
.++.+++ |.+.+ |++++|+|+||||||||+++|+|+..+ +.|.+.+.|+
T Consensus 145 ~~vld~v-l~i~~--Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----------~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGR--GQRMGLFAGSGVGKSVLLGMMARYTRA-----------DVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBT--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESC
T ss_pred ceEEeee-EEecC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CeEEEEEece
Confidence 4466778 99999 999999999999999999999999988 8899988886
No 135
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.99 E-value=4.9e-09 Score=80.56 Aligned_cols=84 Identities=20% Similarity=0.145 Sum_probs=61.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
--.++|+|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||........ ...+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~ 81 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT-------STYYRG 81 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC-------GGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH-------HHHhcc
Confidence 34799999999999999999999776656666667776677788888 467888999854322111 234578
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 82 ~d~~i~v~d~~~~ 94 (181)
T 3tw8_B 82 THGVIVVYDVTSA 94 (181)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998764
No 136
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.98 E-value=5.2e-09 Score=82.97 Aligned_cols=84 Identities=24% Similarity=0.171 Sum_probs=61.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.|+|+|++|||||||++.+++........|.++.+.....+.+++ ..+.++|+||....... ....+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI-------TTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC-------CHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH-------HHHHhcc
Confidence 56799999999999999999997665444455555555556677777 46788999996432211 1345678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 93 ~d~ii~v~d~~~~ 105 (213)
T 3cph_A 93 AMGIILVYDVTDE 105 (213)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998754
No 137
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.98 E-value=6.3e-09 Score=78.73 Aligned_cols=82 Identities=22% Similarity=0.182 Sum_probs=59.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+.+... ...++.|+.......+.+++. .+.++|+||.... .......+..+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-------HHHHHHHhhcC
Confidence 4699999999999999999998653 456666766555566677775 5788999985431 12234456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 77 d~~i~v~d~~~~ 88 (168)
T 1u8z_A 77 EGFLCVFSITEM 88 (168)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998764
No 138
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.97 E-value=5.9e-09 Score=86.41 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceee
Q psy2924 7 NKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLT 85 (225)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~ 85 (225)
-+|...+....+..+.++.+.+..... + .-.++|+|.+|+|||||+|.|+|... .+++++++|..
T Consensus 8 w~~~~~~~~~~~~~l~~~~~~~~~~~~------------~--~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~ 73 (262)
T 3def_A 8 WVGFQQFPAATQEKLIEFFGKLKQKDM------------N--SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLR 73 (262)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHHHTTC------------C--EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCC
T ss_pred HHHHhhccHHHHHHHHHHHHHHhhccC------------C--CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCccee
Confidence 346666666667777666665554211 1 34799999999999999999999876 67889999998
Q ss_pred ccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHH--hCCCeEEEEeeCC
Q psy2924 86 TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVA--RTCSLIFIVLDVL 137 (225)
Q Consensus 86 ~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~d~~ 137 (225)
.....+.+++..+.++||||..........+.......+ ..+++++++.+..
T Consensus 74 ~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d 127 (262)
T 3def_A 74 PVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLD 127 (262)
T ss_dssp CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred eEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 888888899999999999998654322111111111111 2567888886554
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.97 E-value=1.9e-10 Score=93.01 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=25.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..+++||++++ |++++|+||||||||||+++|+|++
T Consensus 12 ~l~~isl~i~~--G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNN--IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------C--CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCC--CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57799999999 9999999999999999999999976
No 140
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.96 E-value=6.7e-09 Score=79.64 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=59.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||...... .....+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-------HHHHHhcCC
Confidence 47999999999999999999976554444455555555666777774 678899999543211 123456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 88 d~~i~v~d~~~~ 99 (179)
T 2y8e_A 88 TVAVVVYDITNT 99 (179)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998754
No 141
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.96 E-value=1.2e-08 Score=78.32 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=61.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++.. ...+++.|+.......+.+++. .+.++|+||...... . ....+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~~ 80 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----M---REQYMRA 80 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----C---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHhh
Confidence 3579999999999999999999874 3566778877666666777775 577799999653221 1 1234567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 81 ~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 81 GHGFLLVFAINDR 93 (181)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEeCCCH
Confidence 8999999988764
No 142
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.95 E-value=5e-09 Score=79.70 Aligned_cols=83 Identities=22% Similarity=0.181 Sum_probs=54.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+.+........|.++.+.....+.+++. .+.++|+||....... ....++++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-------TTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-------CHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-------HHHHhccC
Confidence 46899999999999999999986654333444444444455666664 5677899985432211 13456788
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 77 d~~i~v~d~~~~ 88 (170)
T 1g16_A 77 MGIILVYDITDE 88 (170)
T ss_dssp EEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998754
No 143
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.95 E-value=9.2e-09 Score=81.33 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHH
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
++++.... . .++++|++|||||||++.+++-... .+. .|..+..+.+.+++..+.++|+||.......
T Consensus 18 ~~~~~~~~--~-ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------ 85 (198)
T 1f6b_A 18 FLGLYKKT--G-KLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAGMTFTTFDLGGHIQARRV------ 85 (198)
T ss_dssp HHTCTTCC--E-EEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCG------
T ss_pred HhhccCCC--c-EEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECCEEEEEEECCCcHhhHHH------
Confidence 34455444 4 6999999999999999999985432 222 2445567889999999999999996432211
Q ss_pred HHHHHHhCCCeEEEEeeCCCc
Q psy2924 119 QVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 119 ~~~~~~~~~~~~l~~~d~~~~ 139 (225)
....+++++++++++|...+
T Consensus 86 -~~~~~~~~d~~i~v~D~~~~ 105 (198)
T 1f6b_A 86 -WKNYLPAINGIVFLVDCADH 105 (198)
T ss_dssp -GGGGGGGCSEEEEEEETTCG
T ss_pred -HHHHHhcCCEEEEEEECCCH
Confidence 12345688999999998765
No 144
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.95 E-value=1.3e-08 Score=79.16 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=56.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccce----EEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG----CIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVA 124 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G----~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 124 (225)
.-.++|+|++|||||||++.+++.... . ..|+.| .+.+++..+.++|+||... +.......+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~--~-----~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 81 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS--H-----ITPTQGFNIKSVQSQGFKLNVWDIGGQRK-------IRPYWRSYF 81 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE--E-----EEEETTEEEEEEEETTEEEEEEECSSCGG-------GHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c-----ccCcCCeEEEEEEECCEEEEEEECCCCHH-------HHHHHHHHh
Confidence 457999999999999999999986421 1 122333 5677888899999998643 112334566
Q ss_pred hCCCeEEEEeeCCCc
Q psy2924 125 RTCSLIFIVLDVLKP 139 (225)
Q Consensus 125 ~~~~~~l~~~d~~~~ 139 (225)
.+++++++++|...+
T Consensus 82 ~~~~~~i~v~d~~~~ 96 (181)
T 1fzq_A 82 ENTDILIYVIDSADR 96 (181)
T ss_dssp TTCSEEEEEEETTCG
T ss_pred CCCCEEEEEEECcCH
Confidence 889999999998764
No 145
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.95 E-value=5.6e-09 Score=81.58 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=60.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|++|||||||+|.+++.......+. +|.......+.+++..+.++|+||....... ....+.+++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL-------WEHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSSCEEEEEEECCSTTTGGG-------GGGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECCEEEEEEECCCCHHHHHH-------HHHHHhcCC
Confidence 45799999999999999999998763233333 3444456677888899999999996532211 123457899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|....
T Consensus 93 ~ii~v~d~~~~ 103 (190)
T 2h57_A 93 AIIFVIDSSDR 103 (190)
T ss_dssp EEEEEEETTCH
T ss_pred EEEEEEECCCH
Confidence 99999998764
No 146
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.95 E-value=1.8e-08 Score=79.53 Aligned_cols=85 Identities=22% Similarity=0.181 Sum_probs=62.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++........|.++.+...+.+.+++.. +.++|++|..... . .-....++.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~--~~~~~~~~~ 96 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----G--WLRDHCLQT 96 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----H--HHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----h--hhHHHhhcc
Confidence 3579999999999999999999876655566777777667778888865 4566998764311 1 112234677
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 97 ~d~~ilv~d~~~~ 109 (195)
T 3cbq_A 97 GDAFLIVFSVTDR 109 (195)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998754
No 147
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.94 E-value=9.2e-09 Score=81.36 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=59.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||........ ...+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT-------SSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC-------GGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH-------HHhccCC
Confidence 47999999999999999999987654333444444444556777775 67889999965422211 2345778
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 82 d~vilv~d~~~~ 93 (206)
T 2bcg_Y 82 HGIIIVYDVTDQ 93 (206)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 148
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.94 E-value=7.5e-09 Score=78.82 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=76.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.++|+|++|||||||++.+++........+.+|.+.....+.+++.. +.++|+||....... .....++.++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~d 77 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTGD 77 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccCC
Confidence 68999999999999999999876554445555666666777788754 567899986532110 1122456689
Q ss_pred eEEEEeeCCCccc---cHHHHHHHHHhcccccCCCCCccc----ccCC-CCCCCHHHHHHHHHHhhhcCCeEEEee---c
Q psy2924 129 LIFIVLDVLKPLG---HKKLIEHELEGFGLRLNKEPPNID----NQVP-QSELDLDTVKTILSEYRIHNADITLRY---D 197 (225)
Q Consensus 129 ~~l~~~d~~~~~~---~~~~~~~~l~~~~l~~~~~~~~ls----lDEp-~~~LD~~~~~~i~~~l~~~~~~vi~~~---~ 197 (225)
++++++|...+.. ...++.++.+.. .....+.+. .|-+ .........+.+. ...+..++.+| +
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~ 151 (169)
T 3q85_A 78 AFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRHLA---GTLSCKHIETSAALH 151 (169)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCGGGCCSCHHHHHHHH---HHTTCEEEECBTTTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhcc---cCCCCCEEEEeeCcchhhcccCCHHHHHHHH---HHcCCcEEEecCccC
Confidence 9999999876421 122333333321 112344444 3322 1233433333333 33344544444 4
Q ss_pred CChHHHHHHHhc
Q psy2924 198 ATSDDLIDVVEG 209 (225)
Q Consensus 198 ~~~~~~~~~~~~ 209 (225)
.+++++++.+..
T Consensus 152 ~~v~~l~~~l~~ 163 (169)
T 3q85_A 152 HNTRELFEGAVR 163 (169)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 578887766543
No 149
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.93 E-value=2.9e-10 Score=95.74 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
-...+++++.+++ |+.++|+|+||||||||++.|++...+
T Consensus 22 ~~~Ld~i~~~l~~--G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 22 CTGINDKTLGARG--GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTHHHHHCSBCT--TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3456778899999 999999999999999999999998876
No 150
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.93 E-value=2.9e-08 Score=74.75 Aligned_cols=147 Identities=15% Similarity=0.094 Sum_probs=82.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.++++|++|||||||+|.+++... ...++.|+.+.....+.+++.. +.++|+||..... ......+..++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~ 76 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTGE 76 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccCC
Confidence 689999999999999999997643 3455556554445556666654 6779999864321 12234566789
Q ss_pred eEEEEeeCCCccccHHHHHHHHHhccc-ccCCCCCccc----ccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---cCCh
Q psy2924 129 LIFIVLDVLKPLGHKKLIEHELEGFGL-RLNKEPPNID----NQVPQSELDLDTVKTILSEYRIHNADITLRY---DATS 200 (225)
Q Consensus 129 ~~l~~~d~~~~~~~~~~~~~~l~~~~l-~~~~~~~~ls----lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~~~~ 200 (225)
.++++++...... .+.+...+..+.- ......+.+. .|.+.........+.+.+. .+..++.++ ..++
T Consensus 77 ~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi 152 (166)
T 2ce2_X 77 GFLCVFAINNTKS-FEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS---YGIPYIETSAKTRQGV 152 (166)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH---HTCCEEEECTTTCTTH
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH---cCCeEEEecCCCCCCH
Confidence 9999998865421 1122222222111 1112344444 3433223333444444333 333444444 3577
Q ss_pred HHHHHHHhc
Q psy2924 201 DDLIDVVEG 209 (225)
Q Consensus 201 ~~~~~~~~~ 209 (225)
++++..+..
T Consensus 153 ~~l~~~l~~ 161 (166)
T 2ce2_X 153 EDAFYTLVR 161 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 151
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.93 E-value=1.9e-08 Score=85.31 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=66.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEE-cCceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
+.+++|+|++|||||||+|.+++-.. .+++++++|.+...+.+.+ ++..+.++|+||....... .........+.+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN--YFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH--HHTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh--hhhhHHHHHhcc
Confidence 46799999999999999999888754 5678999999999998887 4567899999996432000 000112345678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 81 ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 81 VQVLIHVFDVEST 93 (307)
T ss_dssp CSEEEEEEETTCS
T ss_pred CCEEEEEEECCCh
Confidence 9999999998765
No 152
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.93 E-value=7.6e-10 Score=87.79 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=24.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|++++|+||||||||||+++|+|++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 57899999999999999999999875
No 153
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.93 E-value=8.8e-09 Score=85.64 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=82.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-ccccccccee
Q psy2924 6 KNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTL 84 (225)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~ 84 (225)
...|...+-...+..+.++...+..... . .-.++++|.+|+|||||+|.|+|... .+++++++|.
T Consensus 10 ~~~g~~~l~~~~~~~l~~~~~~~~~~~~------------~--~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~ 75 (270)
T 1h65_A 10 EWSGINTFAPATQTKLLELLGNLKQEDV------------N--SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP 75 (270)
T ss_dssp ECGGGGGSCHHHHHHHHHHHHHHHHTTC------------C--EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred hhcchhhccHHHHHHHHHHHHHHhhcCC------------C--CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcce
Confidence 4567777777777777777776644211 1 34799999999999999999999775 5788999998
Q ss_pred eccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHH--HhCCCeEEEEeeCC
Q psy2924 85 TTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAV--ARTCSLIFIVLDVL 137 (225)
Q Consensus 85 ~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~d~~ 137 (225)
++....+..++..+.++||||..........+....... ...+++++++++..
T Consensus 76 ~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 76 RPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLD 130 (270)
T ss_dssp SCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred eeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 877777778888999999999865332211111121111 23578888886553
No 154
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.93 E-value=1.7e-08 Score=78.74 Aligned_cols=144 Identities=14% Similarity=0.061 Sum_probs=80.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccce-eeccceEEEEcC--------------------------------
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT-LTTVPGCIKYKG-------------------------------- 95 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt-~~~~~G~i~~~g-------------------------------- 95 (225)
.-.++|+|++|||||||+|.+++...+ ..+..|+ .+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 457999999999999999999987643 2222222 222233344444
Q ss_pred -------ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCcccc---HHHHHHHHHhcccccCCCCCccc
Q psy2924 96 -------AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGH---KKLIEHELEGFGLRLNKEPPNID 165 (225)
Q Consensus 96 -------~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~l~~~~l~~~~~~~~ls 165 (225)
..+.++|+||...... .....++.++++++++|...+... ..++.++.+.. ..+.+.
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piil 152 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIIL 152 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEE
Confidence 5678899998543211 124456789999999998765221 12222222221 134444
Q ss_pred ccCCCC----CCCHHHHHHHHHHhhhcCCeEEEee---cCChHHHHHHHhc
Q psy2924 166 NQVPQS----ELDLDTVKTILSEYRIHNADITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 166 lDEp~~----~LD~~~~~~i~~~l~~~~~~vi~~~---~~~~~~~~~~~~~ 209 (225)
+-.+.+ ..... ++.+.+...+..++.+| +.+++++...+..
T Consensus 153 v~NK~D~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 153 VANKIDKNKFQVDIL---EVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp EEECTTCC-CCSCHH---HHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred EEECCCcccccCCHH---HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 222322 22333 33444444444555444 3578877766543
No 155
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.93 E-value=2.1e-09 Score=83.73 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=85.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcc---hHHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKG---RGRQVIAVA 124 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~---~~~~~~~~~ 124 (225)
-..++|+|++|||||||+|.+++... ...+.+++|++... ...+..+.++|+||+......... +..-....+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~---~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF---YLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE---EEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE---EEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 45799999999999999999999863 56667777765432 223557889999996543211100 111111223
Q ss_pred h---CCCeEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHH----HHHHHHhhhcC-CeEEEe
Q psy2924 125 R---TCSLIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTV----KTILSEYRIHN-ADITLR 195 (225)
Q Consensus 125 ~---~~~~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~----~~i~~~l~~~~-~~vi~~ 195 (225)
. .++++++++|...... ....+.+.+... ..+.+.+-++.+-.+.... +.+.+.+.... ..++.+
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPT 173 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEEC
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 3 3477888888765422 222333444443 3455554444444443333 33333333322 234444
Q ss_pred e---cCChHHHHHHHhc
Q psy2924 196 Y---DATSDDLIDVVEG 209 (225)
Q Consensus 196 ~---~~~~~~~~~~~~~ 209 (225)
| +.+++++++.+..
T Consensus 174 Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 174 SSVTGEGISELLDLIST 190 (195)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 4 3578887766543
No 156
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.92 E-value=2.2e-08 Score=77.42 Aligned_cols=83 Identities=23% Similarity=0.133 Sum_probs=58.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE--EEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI--QLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++... ...++.|+.......+.+++..+ .++|+||...... . ....+.+
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ 89 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----M---REQYMRT 89 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----S---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH----H---HHHHHhc
Confidence 34799999999999999999997643 44566665555556677777654 4599998543211 1 2345677
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 90 ~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 90 GDGFLIVYSVTDK 102 (183)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998764
No 157
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.92 E-value=2.3e-08 Score=75.49 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=57.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+.+-.. ...++.|+.+.....+.+++.. +.++|+||.... .......+..+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF-IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHhccC
Confidence 4699999999999999999987543 2345555544444556677754 778999985432 12233456778
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+.+++++|...+
T Consensus 76 ~~~i~v~d~~~~ 87 (167)
T 1kao_A 76 QGFILVYSLVNQ 87 (167)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCCCH
Confidence 999999998764
No 158
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.92 E-value=3.2e-08 Score=76.14 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........+..+.+.....+.+++ ..+.++|+||..... ......+..+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhccC
Confidence 4699999999999999999998654322222222222233455555 367889999854321 1123456789
Q ss_pred CeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCC-----CCHHHHHHHHHHhhhcCCeEEEee---cCC
Q psy2924 128 SLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSE-----LDLDTVKTILSEYRIHNADITLRY---DAT 199 (225)
Q Consensus 128 ~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~-----LD~~~~~~i~~~l~~~~~~vi~~~---~~~ 199 (225)
+++++++|...+.. .+.+...+..+.-......+.+.+-.+.+. +.....+. .....+..++.++ +.+
T Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 86 AAAIIVFDVTNQAS-FERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQT---YAQENGLFFMETSAKTATN 161 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHH---HHHHTTCEEEECCSSSCTT
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHH---HHHHcCCEEEEEECCCCCC
Confidence 99999999875422 112222222221111123334442222222 23333333 3333344444444 457
Q ss_pred hHHHHHHHhccc
Q psy2924 200 SDDLIDVVEGNR 211 (225)
Q Consensus 200 ~~~~~~~~~~~~ 211 (225)
+++++..+...+
T Consensus 162 i~~l~~~l~~~~ 173 (181)
T 2efe_B 162 VKEIFYEIARRL 173 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 888887765544
No 159
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=1.6e-08 Score=78.69 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=57.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|++|||||||++.+++-... .+ ..|.......+.+++..+.++|+||...... .....+++++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 85 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVINNTRFLMWDIGGQESLRS-------SWNTYYTNTE 85 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEETTEEEEEEECCC----CG-------GGHHHHTTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcCCC
Confidence 457999999999999999999975432 22 1233345567888899999999999753221 1134567899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 86 ~ii~v~d~~~~ 96 (187)
T 1zj6_A 86 FVIVVVDSTDR 96 (187)
T ss_dssp EEEEEEETTCT
T ss_pred EEEEEEeCCCH
Confidence 99999998765
No 160
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.91 E-value=3e-09 Score=83.19 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=77.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC--ccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCC---cchHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY--SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG---KGRGRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~--~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~---~~~~~~~~~~ 123 (225)
...++|+|++|||||||+|.+++.. ..+.+.+++|++.... .+ +..+.++|+||+....... ..+.......
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 4679999999999999999999875 3456677777654332 23 4478999999965422110 0011111223
Q ss_pred HhCC---CeEEEEeeCCCcccc-HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHH----HHHHHHhhhc-CCeEEE
Q psy2924 124 ARTC---SLIFIVLDVLKPLGH-KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTV----KTILSEYRIH-NADITL 194 (225)
Q Consensus 124 ~~~~---~~~l~~~d~~~~~~~-~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~----~~i~~~l~~~-~~~vi~ 194 (225)
+..+ +++++++|....... ...+...+.. ...+.+.+-.+.+-.+.... +.+.+.+... ...++.
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 3334 788889998654222 1223333433 23455554444444443323 3333333321 234444
Q ss_pred ee---cCChHHHHHHHh
Q psy2924 195 RY---DATSDDLIDVVE 208 (225)
Q Consensus 195 ~~---~~~~~~~~~~~~ 208 (225)
+| +.+++++.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIK 190 (195)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHH
Confidence 44 357777776654
No 161
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.91 E-value=1.4e-08 Score=77.88 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=58.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC---ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG---AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-.++|+|++|||||||++.+++...+....|.++.+.....+.+++ ..+.++|+||...... . ....+.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK----M---LDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT----T---HHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc----h---hhHHHhh
Confidence 4699999999999999999998654311122222444556677776 5788999999643211 1 2345688
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 80 ~d~~i~v~d~~~~ 92 (178)
T 2hxs_A 80 AQGVLLVYDITNY 92 (178)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998764
No 162
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.91 E-value=1.7e-08 Score=78.56 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=82.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.|+++|.+|||||||+|.+++... ...++.|+.+.....+.+++.. +.++|+||..... ......+..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 4799999999999999999997643 3556667666555667777754 7789999854311 1123456778
Q ss_pred CeEEEEeeCCCccccHHHHHHHHHhccc-ccCCCCCccc----ccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---cCC
Q psy2924 128 SLIFIVLDVLKPLGHKKLIEHELEGFGL-RLNKEPPNID----NQVPQSELDLDTVKTILSEYRIHNADITLRY---DAT 199 (225)
Q Consensus 128 ~~~l~~~d~~~~~~~~~~~~~~l~~~~l-~~~~~~~~ls----lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~~~ 199 (225)
++++++++...... .+.+..+++.+.. ......+.+. .|.+.........+.+.+. .+..++.++ +.+
T Consensus 94 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 94 EGFLCVFAINNSKS-FADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS---YGIPFIETSAKTRQG 169 (190)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH---HTCCEEECCTTTCTT
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH---cCCeEEEEeCCCCCC
Confidence 99999998875421 1122222222111 1112344444 3433333444444444433 333444444 457
Q ss_pred hHHHHHHHhc
Q psy2924 200 SDDLIDVVEG 209 (225)
Q Consensus 200 ~~~~~~~~~~ 209 (225)
+++++..+..
T Consensus 170 i~~l~~~l~~ 179 (190)
T 3con_A 170 VEDAFYTLVR 179 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766544
No 163
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.91 E-value=2e-08 Score=76.19 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+.+........|..+.+.....+.+++. .+.++|+||..... ......++++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 36999999999999999999976543222233333333445666664 67889999854321 1234456889
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 77 d~~i~v~d~~~~ 88 (170)
T 1ek0_A 77 QAALVVYDVTKP 88 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEecCCh
Confidence 999999998764
No 164
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=1.9e-08 Score=78.41 Aligned_cols=152 Identities=15% Similarity=0.053 Sum_probs=83.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++........|..+.+.....+.+++. .+.++|+||...... .....++.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 87 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------LTPSYYRG 87 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-------SHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHHHhcc
Confidence 458999999999999999999986543222222223333445566653 577889998643211 12345678
Q ss_pred CCeEEEEeeCCCccccHHHHHHHHHhcccc-cCCCCCccc----ccCCCCCCCHHHHHHHHHHhhhcCCeEEEee---cC
Q psy2924 127 CSLIFIVLDVLKPLGHKKLIEHELEGFGLR-LNKEPPNID----NQVPQSELDLDTVKTILSEYRIHNADITLRY---DA 198 (225)
Q Consensus 127 ~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ls----lDEp~~~LD~~~~~~i~~~l~~~~~~vi~~~---~~ 198 (225)
++++++++|...+.. .+.+...+..+.-. .....+.+. .|-+....+...... ........++.++ ..
T Consensus 88 ~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 88 AQGVILVYDVTRRDT-FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK---FARKHSMLFIEASAKTCD 163 (195)
T ss_dssp CCEEEEEEETTCHHH-HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH---HHHHTTCEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHH---HHHHcCCEEEEecCCCCC
Confidence 999999999876421 11222233222111 112333333 343323344333333 3333444444444 35
Q ss_pred ChHHHHHHHhccc
Q psy2924 199 TSDDLIDVVEGNR 211 (225)
Q Consensus 199 ~~~~~~~~~~~~~ 211 (225)
++++++..+...+
T Consensus 164 gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 164 GVQCAFEELVEKI 176 (195)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7877776655433
No 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.90 E-value=2.9e-08 Score=76.59 Aligned_cols=82 Identities=26% Similarity=0.248 Sum_probs=60.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++-. .+..++.|+.......+.+++. .+.++|+||........ ...+..+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP-------QTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC-------GGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH-------HHHHhcC
Confidence 479999999999999999999544 3566777776666667778874 45789999965432111 1244678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 79 ~~~i~v~d~~~~ 90 (181)
T 3t5g_A 79 NGYILVYSVTSI 90 (181)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998764
No 166
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.89 E-value=2.3e-08 Score=75.85 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=55.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+.+........|.++.+.....+.+++. .+.++|+||....... ....+..+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI-------TKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-------CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH-------HHHHhcCC
Confidence 46899999999999999999986543222222233334455666664 6778899985432111 13456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 79 d~~i~v~d~~~~ 90 (168)
T 1z2a_A 79 QACVLVFSTTDR 90 (168)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 167
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.89 E-value=2.3e-08 Score=75.71 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=56.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+.+... ...++.|+.......+.+++. .+.++|+||..... ......+.++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST-------THHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 3689999999999999999997543 344555554444444555554 57789999964321 1123455678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 76 d~~i~v~d~~~~ 87 (167)
T 1c1y_A 76 QGFALVYSITAQ 87 (167)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999988764
No 168
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.89 E-value=1.8e-08 Score=78.78 Aligned_cols=83 Identities=18% Similarity=0.132 Sum_probs=55.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||....... ....+.++
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI-------TRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-------CHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh-------HHHHhccC
Confidence 47999999999999999999986543333333333334455667764 6788999986432211 13456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 95 d~ii~v~d~~~~ 106 (191)
T 2a5j_A 95 AGALLVYDITRR 106 (191)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998764
No 169
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.89 E-value=2.6e-08 Score=91.08 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCC-CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc---ccccccccee
Q psy2924 9 ATAGHLGLLKARIAKLRRELITPKGG-GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS---EVAAYEFTTL 84 (225)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~---~v~~~~~tt~ 84 (225)
.++.|..+.+.++..+.+...-.... ....+. .... -.+|+|+|.+|+|||||+|.|+|... +++..|+||+
T Consensus 28 ~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~--~~~~--~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 28 VTSSLKELYRTKLLPLEEHYRFGSFHSPALEDA--DFDG--KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC 103 (550)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCST--TTSS--CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS
T ss_pred HHHHHHHHHHHhhhhHHHHhccccccchhcccc--cccC--CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce
Confidence 57888888888888888775421110 011111 1222 45899999999999999999999875 4788888865
Q ss_pred ecc--c---eEEE-------------------------------EcC---ceEEEEeCCCCCCCccC--C--cchHHHHH
Q psy2924 85 TTV--P---GCIK-------------------------------YKG---AKIQLLDLPGIIEGAKD--G--KGRGRQVI 121 (225)
Q Consensus 85 ~~~--~---G~i~-------------------------------~~g---~~i~~~d~~g~~~~~~~--~--~~~~~~~~ 121 (225)
... . |.+. +.+ ..+.++||||+...... . ..+.....
T Consensus 104 ~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~ 183 (550)
T 2qpt_A 104 FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLR 183 (550)
T ss_dssp EEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHH
T ss_pred EEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHH
Confidence 210 0 1010 111 36889999998752221 1 11333344
Q ss_pred HHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhh
Q psy2924 122 AVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYR 186 (225)
Q Consensus 122 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~ 186 (225)
..+..+|++++++|+...... +....+++.+. ....+.+.+-++++.++......+.+.+.
T Consensus 184 ~~l~~aD~il~VvDa~~~~~~-~~~~~~l~~l~---~~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 184 WFAERVDLIILLFDAHKLEIS-DEFSEAIGALR---GHEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp HHHHHCSEEEEEEETTSCCCC-HHHHHHHHHTT---TCGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEEeCCcCCCC-HHHHHHHHHHH---hcCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 567789999999998653111 11223333321 11234455666666677666666655553
No 170
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.89 E-value=2.3e-08 Score=76.55 Aligned_cols=83 Identities=22% Similarity=0.160 Sum_probs=56.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccce-eeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT-LTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt-~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
.-.++|+|++|||||||+|.+.+.... ..++.|+ .+.....+.+++. .+.++|+||.... .......+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~ 86 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-------RAVTRSYYR 86 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT-------CHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh-------hhhHHHHhc
Confidence 347999999999999999999986542 3333332 2222334555653 5788899985421 123345678
Q ss_pred CCCeEEEEeeCCCc
Q psy2924 126 TCSLIFIVLDVLKP 139 (225)
Q Consensus 126 ~~~~~l~~~d~~~~ 139 (225)
+++++++++|....
T Consensus 87 ~~d~~i~v~d~~~~ 100 (179)
T 1z0f_A 87 GAAGALMVYDITRR 100 (179)
T ss_dssp TCSEEEEEEETTCH
T ss_pred cCCEEEEEEeCcCH
Confidence 89999999998764
No 171
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.88 E-value=1.7e-08 Score=76.40 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=57.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.++++|++|||||||++.+.+-... ...| |.......+.+.+..+.++|+||... +.......+.+++++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGG-------GHHHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChh-------hHHHHHHHhccCCEE
Confidence 5899999999999999999875432 1222 33344556777788899999998743 112234467889999
Q ss_pred EEEeeCCCc
Q psy2924 131 FIVLDVLKP 139 (225)
Q Consensus 131 l~~~d~~~~ 139 (225)
++++|...+
T Consensus 72 i~v~d~~~~ 80 (164)
T 1r8s_A 72 IFVVDSNDR 80 (164)
T ss_dssp EEEEETTCG
T ss_pred EEEEECCCH
Confidence 999998765
No 172
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.88 E-value=2.1e-08 Score=79.02 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=58.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||........ ...+.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 80 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG-------VAFYRG 80 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-------CGGGTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH-------HHHHhC
Confidence 357999999999999999999987644333333345555556666664 67889999964322211 124568
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 81 ~d~~i~v~d~~~~ 93 (207)
T 1vg8_A 81 ADCCVLVFDVTAP 93 (207)
T ss_dssp CSEEEEEEETTCH
T ss_pred CcEEEEEEECCCH
Confidence 8999999998764
No 173
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.88 E-value=4.4e-09 Score=81.40 Aligned_cols=84 Identities=19% Similarity=0.149 Sum_probs=41.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++........|.++.+.....+.+++ ..+.++|+||....... ....+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~ 80 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYRG 80 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-------HHHHHhc
Confidence 34799999999999999999997654433444445555555677777 56788999986432111 1234567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 81 ~d~~i~v~d~~~~ 93 (183)
T 2fu5_C 81 AMGIMLVYDITNE 93 (183)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 8999999998764
No 174
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.88 E-value=1.5e-08 Score=78.65 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=58.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++++|++|||||||+|.+++.. ...+..| .......+.+++..+.++|+||...... .....+++++
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t-~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED--VDTISPT-LGFNIKTLEHRGFKLNIWDVGGQKSLRS-------YWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCC-SSEEEEEEEETTEEEEEEEECCSHHHHT-------TGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCccccc-CccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcCCC
Confidence 5689999999999999999999866 2233322 2234556778888999999998643111 1123456789
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 88 ~ii~v~d~~~~ 98 (186)
T 1ksh_A 88 GLIWVVDSADR 98 (186)
T ss_dssp EEEEEEETTCG
T ss_pred EEEEEEECcCH
Confidence 99999998765
No 175
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.88 E-value=1.6e-08 Score=78.34 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=60.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+.+........|.++.+.....+.+++ ..+.++|+||... +.......+.+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 82 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-------FRSVTRSYYRG 82 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTSTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHHhc
Confidence 34799999999999999999998765444445555555556677777 4678899998542 11223445678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 83 ~d~~i~v~d~~~~ 95 (186)
T 2bme_A 83 AAGALLVYDITSR 95 (186)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 9999999998764
No 176
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.87 E-value=1.8e-08 Score=78.07 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=57.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|++|||||||+|.+.+... ..+. .|.......+.+++..+.++|+||....... ....+++++
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d 90 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV--VHTS-PTIGSNVEEIVINNTRFLMWDIGGQESLRSS-------WNTYYTNTE 90 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC--EEEE-CCSSSSCEEEEETTEEEEEEEESSSGGGTCG-------GGGGGTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CccC-CcCceeeEEEEECCEEEEEEECCCCHhHHHH-------HHHHhccCC
Confidence 45799999999999999999998654 1111 1222234567788899999999997432211 123457899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|....
T Consensus 91 ~ii~v~D~~~~ 101 (181)
T 2h17_A 91 FVIVVVDSTDR 101 (181)
T ss_dssp EEEEEEETTCT
T ss_pred EEEEEEECCCH
Confidence 99999998765
No 177
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.87 E-value=1.6e-08 Score=77.63 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=78.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC---ceEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG---AKIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
.-.++|+|++|||||||++.+.+........|.++.+.....+.+++ ..+.++|+||..... ......+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 80 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYR 80 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCST
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhh
Confidence 34799999999999999999998654322233333444455566652 467889999853211 11123456
Q ss_pred CCCeEEEEeeCCCccc---cHHHHHHHHHhcccccCCCCCcccccCCCC------CCCHHHHHHHHHHhhhcCCeEEEee
Q psy2924 126 TCSLIFIVLDVLKPLG---HKKLIEHELEGFGLRLNKEPPNIDNQVPQS------ELDLDTVKTILSEYRIHNADITLRY 196 (225)
Q Consensus 126 ~~~~~l~~~d~~~~~~---~~~~~~~~l~~~~l~~~~~~~~lslDEp~~------~LD~~~~~~i~~~l~~~~~~vi~~~ 196 (225)
.++++++++|...+.. ...+..++............+.+.+-.+.+ .......+.+.+.. ....++.+|
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~--~~~~~~~~S 158 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL--GDIPLFLTS 158 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT--TSCCEEEEB
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhc--CCCeEEEEe
Confidence 7899999999876421 122333333332221123345444222222 23333333333322 223344444
Q ss_pred ---cCChHHHHHHHhc
Q psy2924 197 ---DATSDDLIDVVEG 209 (225)
Q Consensus 197 ---~~~~~~~~~~~~~ 209 (225)
+.+++++...+..
T Consensus 159 a~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 159 AKNAINVDTAFEEIAR 174 (182)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3578887766543
No 178
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.87 E-value=1.7e-08 Score=79.38 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=57.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+.+.. ....++.|+.+.....+.+++.. +.++|+||....... ....+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 91 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------RPLCYTN 91 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------GGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------hHhhcCC
Confidence 5689999999999999999999865 35677788777666777788864 568999987543221 1124578
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 92 ~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 92 TDIFLLCFSVVSP 104 (201)
T ss_dssp CSEEEEEEETTCH
T ss_pred CcEEEEEEECCCH
Confidence 8999999998764
No 179
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.86 E-value=3.9e-08 Score=81.91 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=37.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccc------cceeeccceE--EEEcCc--eEEEEeCCCCCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE------FTTLTTVPGC--IKYKGA--KIQLLDLPGIIEG 109 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~------~tt~~~~~G~--i~~~g~--~i~~~d~~g~~~~ 109 (225)
-.++|+|.+|+|||||+|.|++......++| .+|....... +..+|. .+.++||||+...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 3599999999999999999999877656663 3343333333 334454 7889999998543
No 180
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.86 E-value=1.4e-09 Score=97.66 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=42.8
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~ 97 (225)
.++++|++.+ |.+++|+|+||||||||+++|+|++.+ ..|.|.+.+.+
T Consensus 283 ~~~Isl~i~~--GeVI~LVGpNGSGKTTLl~~LAgll~~-----------~~G~V~l~g~D 330 (503)
T 2yhs_A 283 DEPLNVEGKA--PFVILMVGVNGVGKTTTIGKLARQFEQ-----------QGKSVMLAAGD 330 (503)
T ss_dssp BCCCCCCSCT--TEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred CCCceeeccC--CeEEEEECCCcccHHHHHHHHHHHhhh-----------cCCeEEEecCc
Confidence 4689999999 999999999999999999999999887 78888886543
No 181
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.86 E-value=5.5e-08 Score=75.88 Aligned_cols=82 Identities=20% Similarity=0.158 Sum_probs=56.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|++|||||||+|.+++-... ..+.. |.......+...+..+.++|+||..... ......+.+++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-EDMIP-TVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYCRGVS 92 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCC-CCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHHTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-CccCC-CCceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHccCC
Confidence 457999999999999999999975532 12222 2222334566678889999999864211 11234568899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|....
T Consensus 93 ~ii~v~D~~~~ 103 (188)
T 1zd9_A 93 AIVYMVDAADQ 103 (188)
T ss_dssp EEEEEEETTCG
T ss_pred EEEEEEECCCH
Confidence 99999998764
No 182
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=1.7e-08 Score=77.64 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=55.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcccccc-ccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAY-EFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~-~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
.-.++++|++|||||||+|.+++.......+ |.++.+.....+.+++. .+.++|+||..... ......+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 82 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYR 82 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHcc
Confidence 3479999999999999999999876533333 33334433445566765 67788999854321 11223457
Q ss_pred CCCeEEEEeeCCCc
Q psy2924 126 TCSLIFIVLDVLKP 139 (225)
Q Consensus 126 ~~~~~l~~~d~~~~ 139 (225)
+++++++++|...+
T Consensus 83 ~~d~ii~v~d~~~~ 96 (180)
T 2g6b_A 83 DAHALLLLYDVTNK 96 (180)
T ss_dssp GCSEEEEEEETTCH
T ss_pred CCCEEEEEEECCCH
Confidence 78999999998764
No 183
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.85 E-value=3.1e-09 Score=90.80 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+++++++.+ | +.+|+|+||||||||+.+|..+.
T Consensus 16 ~~~~l~~~~--g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSD--R-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCS--S-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCC--C-cEEEECCCCCcHHHHHHHHHHHh
Confidence 356777777 7 99999999999999999998553
No 184
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.84 E-value=5.3e-09 Score=91.03 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=37.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHHHhccccccceEE
Q psy2924 159 KEPPNIDNQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDVVEGNRIYVPCIY 218 (225)
Q Consensus 159 ~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (225)
..++.+.+||||++||+.....+++.+..+. .+ ++++|+. +. ...++..+....+.+
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~--~~-~~~~d~~~~l~~G~i 362 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR--EF-SEAFDRKLRITGGVV 362 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH--HH-HTTCSCEEEEETTEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch--HH-HHhCCEEEEEECCEE
Confidence 3566777999999999999999998887763 34 4445543 33 344454444444443
No 185
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.84 E-value=9.1e-09 Score=78.33 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=53.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+++...+....|..+.+.....+.+++. .+.++|+||....... ....+.++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL-------GPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhh-------HHHHhccC
Confidence 46999999999999999999976543233333333333455666665 4567799985432111 11234678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 80 d~~i~v~d~~~~ 91 (170)
T 1z08_A 80 NGAILVYDITDE 91 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 186
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.84 E-value=1.2e-08 Score=80.65 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=53.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||....... ....+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~~~ 97 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV-------TRSYYRG 97 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC-------CHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH-------HHHHhcc
Confidence 34799999999999999999998665433344444444445666777 46788999985321111 1345678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 98 ~d~~i~v~d~~~~ 110 (200)
T 2o52_A 98 AAGALLVYDITSR 110 (200)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 9999999998764
No 187
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.84 E-value=1.8e-08 Score=78.78 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
...|+|+|.+|||||||++.+++......+|..|. ......+...+..+.++|+||....... ....+++++
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d 88 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATV-GYNVETFEKGRVAFTVFDMGGAKKFRGL-------WETYYDNID 88 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCS-SEEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGCTTCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccccc-ceeEEEEEeCCEEEEEEECCCCHhHHHH-------HHHHHhcCC
Confidence 45799999999999999999999765432333332 2233456667788999999997542211 123457899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|....
T Consensus 89 ~ii~v~D~~~~ 99 (199)
T 4bas_A 89 AVIFVVDSSDH 99 (199)
T ss_dssp EEEEEEETTCG
T ss_pred EEEEEEECCcH
Confidence 99999998765
No 188
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.84 E-value=2.3e-08 Score=78.59 Aligned_cols=81 Identities=20% Similarity=0.159 Sum_probs=55.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|++|||||||++.+.+-... .. ..|.......+.+.+..+.++|+||...... .....+.+++
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 98 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIRP-------LWRHYFQNTQ 98 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----CT-------THHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 568999999999999999999875432 11 1233334456777888899999998643211 1234567899
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 99 ~iilv~D~~~~ 109 (192)
T 2b6h_A 99 GLIFVVDSNDR 109 (192)
T ss_dssp EEEEEEETTCG
T ss_pred EEEEEEECCCH
Confidence 99999998765
No 189
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.84 E-value=5.5e-09 Score=94.11 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=90.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|.+|||||||+|.+++... +. ..+|++...+.+.+.+..+.++|++|....... ....++.+|
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~ad 391 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL-------WRHYYTGTQ 391 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSGG-------GGGGGTTCC
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCEEEEEEECCCcHHHHHH-------HHHHhccCC
Confidence 35799999999999999999998763 23 344777778888888999999999996432211 233567899
Q ss_pred eEEEEeeCCCccccH---HHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhc-----CCeEEEee---c
Q psy2924 129 LIFIVLDVLKPLGHK---KLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIH-----NADITLRY---D 197 (225)
Q Consensus 129 ~~l~~~d~~~~~~~~---~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~-----~~~vi~~~---~ 197 (225)
++++++|......-. .++.++++.. .....+.+.+-++.+-.+.....++.+.+... ...++.+| +
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EEEEEEECcchhHHHHHHHHHHHHhhhh---hcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 999999987653211 2222333221 11234444533333322221223333333321 11244444 4
Q ss_pred CChHHHHHHHhcccc
Q psy2924 198 ATSDDLIDVVEGNRI 212 (225)
Q Consensus 198 ~~~~~~~~~~~~~~~ 212 (225)
.+++++++.+...+.
T Consensus 469 ~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYK 483 (497)
T ss_dssp BTHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHH
Confidence 688888877655443
No 190
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.84 E-value=6.9e-08 Score=73.24 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=53.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCcc--ccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSE--VAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~--v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
-.++++|++|||||||+|.+.+...+ ..+.++++. ....+.+++ ..+.++|+||..... ......+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE--EEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCc
Confidence 47999999999999999999987632 122222222 122344554 467889999974321 11234567
Q ss_pred CCCeEEEEeeCCCc
Q psy2924 126 TCSLIFIVLDVLKP 139 (225)
Q Consensus 126 ~~~~~l~~~d~~~~ 139 (225)
.++++++++|...+
T Consensus 78 ~~~~~i~v~d~~~~ 91 (170)
T 1z0j_A 78 GSAAAIIVYDITKE 91 (170)
T ss_dssp TCSEEEEEEETTCH
T ss_pred CCCEEEEEEECcCH
Confidence 89999999998764
No 191
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.83 E-value=4.1e-08 Score=76.08 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=54.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeecc-ceEEEEcCc-----------eEEEEeCCCCCCCccCCcchH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV-PGCIKYKGA-----------KIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~-~G~i~~~g~-----------~i~~~d~~g~~~~~~~~~~~~ 117 (225)
-.++|+|++|||||||+|.+++........|....+.. ...+.+++. .+.++|+||... +.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FR 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HH
Confidence 47999999999999999999975532111111111111 223444543 688899998642 22
Q ss_pred HHHHHHHhCCCeEEEEeeCCCc
Q psy2924 118 RQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 118 ~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
......+.+++++++++|...+
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~ 106 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNE 106 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCH
T ss_pred HHHHHHHcCCCEEEEEEECCCH
Confidence 3344566789999999998764
No 192
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.83 E-value=1.4e-08 Score=85.37 Aligned_cols=58 Identities=34% Similarity=0.469 Sum_probs=38.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
+..++++|.||+|||||+|.|+|... .+++.|+||++.. .+.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcCCC
Confidence 56799999999999999999999874 7899999999874 3444 567899999999754
No 193
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.83 E-value=2.1e-08 Score=78.46 Aligned_cols=83 Identities=23% Similarity=0.240 Sum_probs=59.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE--EEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI--QLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++... ...+..|+.......+.+++..+ .++|+||....... ....+.+
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 94 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL-------RPLSYAD 94 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT-------GGGGCTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH-------hHhhccC
Confidence 35799999999999999999998664 45566666555555667777654 88999985432111 1234567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 95 ~d~~i~v~d~~~~ 107 (194)
T 3reg_A 95 SDVVLLCFAVNNR 107 (194)
T ss_dssp CSEEEEEEETTCH
T ss_pred CcEEEEEEECCCH
Confidence 8999999998765
No 194
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.83 E-value=3.9e-08 Score=77.75 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=54.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+.+........|..+.+.....+.+++. .+.++|+||... +.......+++
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 101 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER-------FRTITQSYYRS 101 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG-------GHHHHHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHHhh
Confidence 347999999999999999999876532111111123333455667774 678899998642 12233456788
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 102 ~d~iilv~D~~~~ 114 (201)
T 2hup_A 102 ANGAILAYDITKR 114 (201)
T ss_dssp CSEEEEEEETTBH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998754
No 195
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.82 E-value=3.5e-08 Score=77.37 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........|..+.+.....+.+++. .+.++|+||... +.......+.++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH-------HHHHHHHHhcCC
Confidence 46999999999999999999987653333333344444556777774 578899998542 122334566789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 100 d~iilV~D~~~~ 111 (192)
T 2il1_A 100 KGIILVYDITKK 111 (192)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 196
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.82 E-value=9.4e-10 Score=89.34 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=23.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHh-CCCcc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLA-GVYSE 75 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~-g~~~~ 75 (225)
.-+++||++.+ |++++|+||||||||||+++|+ |+.++
T Consensus 16 ~~~~~sl~v~~--G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 16 TQGPGSMLKSV--GVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ------CCEEC--CCEEEEECSCC----CHHHHHHC----C
T ss_pred ccCCCCcccCC--CCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34589999999 9999999999999999999999 98753
No 197
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.82 E-value=8.5e-09 Score=79.65 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=53.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++|+|++|||||||++.+++-.. ..+. .|.......+.+++..+.++|+||....... ....+.+++
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d 87 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV--VTTK-PTIGFNVETLSYKNLKLNVWDLGGQTSIRPY-------WRCYYADTA 87 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE--EEEC-SSTTCCEEEEEETTEEEEEEEEC----CCTT-------GGGTTTTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc--CccC-CcCccceEEEEECCEEEEEEECCCCHhHHHH-------HHHHhccCC
Confidence 56899999999999999999986443 1111 1222344567788889999999997542211 122446788
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 88 ~ii~v~d~~~~ 98 (183)
T 1moz_A 88 AVIFVVDSTDK 98 (183)
T ss_dssp EEEEEEETTCT
T ss_pred EEEEEEECCCH
Confidence 89999998654
No 198
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.82 E-value=4.1e-08 Score=78.19 Aligned_cols=149 Identities=10% Similarity=0.053 Sum_probs=81.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC------------ceEEEEeCCCCCCCccCCcchH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG------------AKIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g------------~~i~~~d~~g~~~~~~~~~~~~ 117 (225)
-.|+|+|++|||||||+|.+++........|..+.+.....+.+++ ..+.++|+||... +.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------FR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------HH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------HH
Confidence 4799999999999999999998654322122222222233455553 4578899988432 22
Q ss_pred HHHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccC-CCCCcccccCCCCC-----CCHHHHHHHHHHhhhcCCe
Q psy2924 118 RQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLN-KEPPNIDNQVPQSE-----LDLDTVKTILSEYRIHNAD 191 (225)
Q Consensus 118 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~-~~~~~lslDEp~~~-----LD~~~~~~i~~~l~~~~~~ 191 (225)
......+..++++++++|...... .+.+...+..+.-... ...+.+.+-+..+- +.....+.+. ......
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~---~~~~~~ 174 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA---DKYGIP 174 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH---HHTTCC
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH---HHCCCc
Confidence 233456788999999999875422 2234444444322111 23444443333332 2333333333 333344
Q ss_pred EEEee---cCChHHHHHHHhc
Q psy2924 192 ITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 192 vi~~~---~~~~~~~~~~~~~ 209 (225)
++.++ ..++++++..+..
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 44444 3577777766544
No 199
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.82 E-value=9.6e-08 Score=72.88 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=51.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-.++|+|++|||||||+|.+++... ...+.+++|. ....+.+++. .+.++|+||...... . ......+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~---~--~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLDK---S--WSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC----------C--HHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccch---h--hhHHhhccc
Confidence 4699999999999999999998764 2333334333 3455677775 567899998643110 0 112334567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 78 ~~~~i~v~d~~~~ 90 (175)
T 2nzj_A 78 GSAYVIVYSIADR 90 (175)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999988754
No 200
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.81 E-value=1.2e-08 Score=77.77 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=56.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++++|++|||||||+|.+.+-... .+. .|.......+.+++..+.++|+||....... ....+.+++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d 76 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV--TTI-PTIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYYSNTD 76 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--CCC-CCSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--CcC-CcCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHhccCC
Confidence 457999999999999999999865432 111 1333344567788889999999996532111 123456889
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 77 ~ii~v~d~~~~ 87 (171)
T 1upt_A 77 AVIYVVDSCDR 87 (171)
T ss_dssp EEEEEEETTCC
T ss_pred EEEEEEECCCH
Confidence 99999998765
No 201
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=2.9e-08 Score=77.71 Aligned_cols=150 Identities=12% Similarity=0.044 Sum_probs=81.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
-.++|+|++|||||||+|.+++... ...+.+++|... ..+.+++ ..+.++|+||..... ......+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMT--KTVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEE--EEEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEE--EEEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 4799999999999999999987653 222333333222 2233443 467889999854321 11234567
Q ss_pred CCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCccc----ccCCC-CCCCHHHHHHHHHHhhhcCCeEEEee---c
Q psy2924 126 TCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNID----NQVPQ-SELDLDTVKTILSEYRIHNADITLRY---D 197 (225)
Q Consensus 126 ~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~ls----lDEp~-~~LD~~~~~~i~~~l~~~~~~vi~~~---~ 197 (225)
.++++++++|...+.. .+.+...+..+.-......+.+. .|-+. ........ .+.....+..++.++ +
T Consensus 95 ~~d~iilV~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDS-FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDA---KEYAESIGAIVVETSAKNA 170 (192)
T ss_dssp TCSEEEEEEETTCTHH-HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH---HHHHHTTTCEEEECBTTTT
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHH---HHHHHHcCCEEEEEeCCCC
Confidence 8999999999876422 12222222222111112333333 33221 12333333 333344444555444 3
Q ss_pred CChHHHHHHHhcccc
Q psy2924 198 ATSDDLIDVVEGNRI 212 (225)
Q Consensus 198 ~~~~~~~~~~~~~~~ 212 (225)
.++++++..+...+.
T Consensus 171 ~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 171 INIEELFQGISRQIP 185 (192)
T ss_dssp BSHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHH
Confidence 578888887765544
No 202
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=3.2e-08 Score=78.64 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=58.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++...+....|..+.+.....+.+++. .+.++|+||... +.......++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHHhcC
Confidence 47999999999999999999876543333333344444556777775 578899998532 112233456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 100 d~~i~v~D~~~~ 111 (201)
T 2ew1_A 100 NALILTYDITCE 111 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998754
No 203
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.81 E-value=8e-08 Score=75.60 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=54.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++........|..+.+.....+.+++ ..+.++|+||.... .......+.++
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhhcCC
Confidence 4799999999999999999998764222112111222223445555 36788999986431 12234456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 82 d~ii~v~d~~~~ 93 (203)
T 1zbd_A 82 MGFILMYDITNE 93 (203)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 204
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.81 E-value=7.1e-08 Score=73.11 Aligned_cols=80 Identities=23% Similarity=0.190 Sum_probs=44.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-.++++|++|||||||+|.+++... +..+.+++|.. ..+.+++. .+.++|++|..... ......+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR-------WLPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch-------hhhhhhhhh
Confidence 3689999999999999999998765 45566666654 24556665 45678999864321 112234577
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 73 ~~~~i~v~d~~~~ 85 (166)
T 3q72_A 73 GDAYVIVYSVTDK 85 (166)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999988764
No 205
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.6e-08 Score=79.15 Aligned_cols=83 Identities=24% Similarity=0.211 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++........|..+.+.....+.+++ ..+.++|+||........ ...+..+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT-------SAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC-------GGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH-------HHHhccC
Confidence 4799999999999999999998765433333334444445667777 467889999965432211 2345678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 87 d~vilV~D~~~~ 98 (223)
T 3cpj_B 87 VGALIVYDISKS 98 (223)
T ss_dssp CEEEEEEC-CCH
T ss_pred CEEEEEEeCCCH
Confidence 999999988754
No 206
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=4.5e-08 Score=76.49 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=60.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++++|++|||||||++.+.+-.. ...++.|+.+.....+.+++ ..+.++|+||....... ....+.+
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~ 89 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-------RPLSYPM 89 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-------GGGGCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-------HHHhcCC
Confidence 34799999999999999999997643 45677776665555677777 45678999996543211 1234577
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 90 ~d~~i~v~d~~~~ 102 (194)
T 2atx_A 90 TDVFLICFSVVNP 102 (194)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998764
No 207
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.80 E-value=6.1e-10 Score=105.28 Aligned_cols=34 Identities=21% Similarity=0.064 Sum_probs=28.3
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..++++|+ |++++|+||||||||||+++|+|+..
T Consensus 568 vl~disl~-----g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 568 VPNDLEMA-----HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CCEEEEES-----SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EeeeccCC-----CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 34455555 68999999999999999999999864
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.80 E-value=6.2e-09 Score=90.70 Aligned_cols=59 Identities=27% Similarity=0.328 Sum_probs=47.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC------CccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV------YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~------~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+..++++|++|+|||||+|+|++. ...++++|+||+++..+. + +..+.++||||+....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHH 226 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHH
Confidence 457999999999999999999997 446899999998875433 2 3347899999987543
No 209
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.79 E-value=3.5e-08 Score=85.53 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+..++|+||||||||||+++|+|...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 679999999999999999999999876
No 210
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.79 E-value=4.8e-08 Score=75.98 Aligned_cols=150 Identities=16% Similarity=0.097 Sum_probs=80.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccce------eeccceE------E-EEcC--ceEEEEeCCCCCCCccCCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT------LTTVPGC------I-KYKG--AKIQLLDLPGIIEGAKDGK 114 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt------~~~~~G~------i-~~~g--~~i~~~d~~g~~~~~~~~~ 114 (225)
-.++|+|++|||||||++.+.|.... .|..++ ..++.|. + .+++ ..+.++|+||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 47999999999999999999987643 222111 1112221 1 2233 357889999864321
Q ss_pred chHHHHHHHHhCCCeEEEEeeCCCcc-----ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 115 GRGRQVIAVARTCSLIFIVLDVLKPL-----GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 115 ~~~~~~~~~~~~~~~~l~~~d~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
......+++++++++++|...+. ...+.+.+.+..+.- .....+.+.+-++.+-.+....+++.+.+...+
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG 164 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccccCHHHHHHHHHhcC
Confidence 22345678899999999987431 111223333333311 112345555333333222223334444455544
Q ss_pred C-eEEEee---cCChHHHHHHHhc
Q psy2924 190 A-DITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 190 ~-~vi~~~---~~~~~~~~~~~~~ 209 (225)
. .++.++ +.++++++..+..
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHH
Confidence 4 444434 4678888766543
No 211
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.79 E-value=7.9e-08 Score=75.02 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........+....+.....+.+++ ..+.++|+||...... .....+.++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-------ITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-------THHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHHHhccC
Confidence 4799999999999999999998654311111111111222344443 4578899999754211 123456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 99 d~vi~v~D~~~~ 110 (193)
T 2oil_A 99 VGALLVFDLTKH 110 (193)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998764
No 212
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.79 E-value=5.1e-10 Score=100.54 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=45.0
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
..+.++++|++++ ++++|+||||||||||+++|+|+..| ++|.|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIP-----------DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCC-----------CTTTCCCCCTTSC
T ss_pred cccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEEcc
Confidence 4567788999887 59999999999999999999999988 7888888887653
No 213
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.78 E-value=8.3e-09 Score=80.61 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=49.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccc---cccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEV---AAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v---~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
...++|+|++|||||||++.+++...+. +..|.++. .+.+..+.++|+||....... +.........
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~~~ 117 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYK---LSDYLKTRAK 117 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC---HHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHH---HHHHHHhhcc
Confidence 4589999999999999999999876421 11122221 225667888999997543211 1111223334
Q ss_pred CCCeEEEEeeCC
Q psy2924 126 TCSLIFIVLDVL 137 (225)
Q Consensus 126 ~~~~~l~~~d~~ 137 (225)
.++++++++|..
T Consensus 118 ~~~~~i~v~d~~ 129 (193)
T 2ged_A 118 FVKGLIFMVDST 129 (193)
T ss_dssp GEEEEEEEEETT
T ss_pred cCCEEEEEEECC
Confidence 578899999987
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.78 E-value=2e-09 Score=86.49 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=30.4
Q ss_pred CCCCc-eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PGEGF-DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~is~-~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++.. .+++ |+.++|+||||||||||++.|++...+
T Consensus 13 d~~~~ggi~~--G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 13 DKLIQGGIPQ--GFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp HGGGTTSEET--TCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcC--CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34444 5788 999999999999999999999987765
No 215
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.77 E-value=2.6e-08 Score=85.38 Aligned_cols=148 Identities=16% Similarity=0.071 Sum_probs=84.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
-.|+|+|.+|||||||++.+++-.. +..+| |.......+.+.+..+.++|+||...... .....++.+++
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad~ 235 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP-------LWRHYFQNTQG 235 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTEEEEEEECC-----CC-------SHHHHHTTEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcEEEEEEECCCCHhHHH-------HHHHHhccCCE
Confidence 3799999999999999999988663 33333 55555667777888999999998432211 12345678899
Q ss_pred EEEEeeCCCcccc---HHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC-----CeEEEee---cC
Q psy2924 130 IFIVLDVLKPLGH---KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN-----ADITLRY---DA 198 (225)
Q Consensus 130 ~l~~~d~~~~~~~---~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~-----~~vi~~~---~~ 198 (225)
+++++|......- ...+.+++... .....+.+.+-++.+-.+....+++.+.+.... ..++.+| +.
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 9999998654221 12223333221 112344455444444333222334444443221 1244444 45
Q ss_pred ChHHHHHHHhcc
Q psy2924 199 TSDDLIDVVEGN 210 (225)
Q Consensus 199 ~~~~~~~~~~~~ 210 (225)
+++++++.+...
T Consensus 313 gi~el~~~l~~~ 324 (329)
T 3o47_A 313 GLYEGLDWLSNQ 324 (329)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 788887766543
No 216
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=84.47 Aligned_cols=84 Identities=23% Similarity=0.160 Sum_probs=59.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
--.|+|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||........ ...+.+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~~~ 105 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYYRG 105 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS-------CC--CC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH-------HHHhhc
Confidence 357999999999999999999987655555566666666677778874 57888999965332211 124567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 106 ~d~~i~v~d~~~~ 118 (199)
T 3l0i_B 106 AHGIIVVYDVTDQ 118 (199)
T ss_dssp CSEEEECC-CCCS
T ss_pred CCEEEEEEECCCH
Confidence 8999999988764
No 217
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.76 E-value=9.5e-08 Score=74.39 Aligned_cols=84 Identities=20% Similarity=0.153 Sum_probs=56.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+.+-.......|..+.+.....+.+++. .+.++|+||..... . ......++++
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-----~~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-K-----SMVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH-T-----TTHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh-h-----hhhHHHhcCC
Confidence 47999999999999999999875543222333333334455667764 67889999853211 0 1123456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|....
T Consensus 95 d~iilv~D~~~~ 106 (189)
T 1z06_A 95 HAVVFVYDMTNM 106 (189)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998764
No 218
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.76 E-value=1.5e-08 Score=88.39 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=34.1
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeecc-ceEEEEcCc
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV-PGCIKYKGA 96 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~-~G~i~~~g~ 96 (225)
+.+ |+.++|+||||||||||+++|+|++.+ . +|.|.+.+.
T Consensus 133 ~~~--g~~i~ivG~~GsGKTTll~~l~~~~~~-----------~~~g~I~~~e~ 173 (372)
T 2ewv_A 133 HRK--MGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIED 173 (372)
T ss_dssp TSS--SEEEEEECSSSSSHHHHHHHHHHHHHH-----------HSCCEEEEEES
T ss_pred hcC--CCEEEEECCCCCCHHHHHHHHHhhcCc-----------CCCcEEEEecc
Confidence 556 889999999999999999999999877 6 788865443
No 219
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.76 E-value=9e-08 Score=76.25 Aligned_cols=153 Identities=14% Similarity=0.037 Sum_probs=79.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceE-EEEc-C--ceEEEEeCCCCCCCccCCcchHHHHHHHHh
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGC-IKYK-G--AKIQLLDLPGIIEGAKDGKGRGRQVIAVAR 125 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~-i~~~-g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 125 (225)
-.++|+|++|||||||+|.+++.... ..+..|+....... +... + ..+.++|+||....... ....+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL-------KDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC-------CHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH-------HHHHhh
Confidence 47999999999999999999975532 22222211111111 1122 2 45788999996532211 124567
Q ss_pred CCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHH--HHHHHHHHhhhcCCeEEEee---cCCh
Q psy2924 126 TCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLD--TVKTILSEYRIHNADITLRY---DATS 200 (225)
Q Consensus 126 ~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~--~~~~i~~~l~~~~~~vi~~~---~~~~ 200 (225)
.++++++++|...... .+.+...+..+........+.+.+-+..+-.+.. ..+.+.+........++.+| +.++
T Consensus 84 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 84 GASGAILFFDVTSRIT-CQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162 (218)
T ss_dssp TCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTT
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 8999999999876521 1112222222211112234555544444433321 12233334444444555444 4578
Q ss_pred HHHHHHHhccc
Q psy2924 201 DDLIDVVEGNR 211 (225)
Q Consensus 201 ~~~~~~~~~~~ 211 (225)
++++..+...+
T Consensus 163 ~~l~~~l~~~~ 173 (218)
T 4djt_A 163 GLPFLHLARIF 173 (218)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876665443
No 220
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.76 E-value=1.1e-08 Score=80.47 Aligned_cols=84 Identities=24% Similarity=0.245 Sum_probs=36.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-ccccccccee-eccceEEEEcCc----eEEEEeCCCCCCCccCCcchHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTL-TTVPGCIKYKGA----KIQLLDLPGIIEGAKDGKGRGRQVIA 122 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~-~~~~G~i~~~g~----~i~~~d~~g~~~~~~~~~~~~~~~~~ 122 (225)
.-.++|+|++|||||||++.+++... ....++.|+. +.....+.+++. .+.++|+||.... ......
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~ 92 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY-------KEQISQ 92 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-------HHHHST
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-------HHHHHH
Confidence 45799999999999999999998732 2345666653 555667777764 6888999986421 112223
Q ss_pred HHhCCCeEEEEeeCCCc
Q psy2924 123 VARTCSLIFIVLDVLKP 139 (225)
Q Consensus 123 ~~~~~~~~l~~~d~~~~ 139 (225)
.+.+++++++++|...+
T Consensus 93 ~~~~~d~~i~v~d~~~~ 109 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSM 109 (208)
T ss_dssp TCCCCCEEEEEEETTCH
T ss_pred HHhhCcEEEEEEECCCH
Confidence 45678999999998764
No 221
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.76 E-value=5.7e-08 Score=75.68 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=53.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||+|.+++........+..+.+.....+.+++ ..+.++|+||....... ....+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-------TTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-------GGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-------HHHhccCC
Confidence 3799999999999999999998654322122212222223445554 36788999996432211 12345789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 96 d~ii~v~d~~~~ 107 (189)
T 2gf9_A 96 MGFLLMYDIANQ 107 (189)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998754
No 222
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.75 E-value=1.1e-07 Score=71.99 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=52.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||+|.+++-.......|..+.+.....+.+++ ..+.++|+||..... ......+..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCC
Confidence 4699999999999999999997543211111111111122344554 467889999864321 1124456789
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 80 d~~i~v~d~~~~ 91 (170)
T 1r2q_A 80 QAAIVVYDITNE 91 (170)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998764
No 223
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.75 E-value=1.6e-07 Score=84.48 Aligned_cols=148 Identities=21% Similarity=0.212 Sum_probs=87.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC-------ccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY-------SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVI 121 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~-------~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~ 121 (225)
.-.++++|..++|||||++.|++.. .+....+++|.+.....+.+++..+.++|+||... +.....
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~ 91 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVV 91 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHH
Confidence 3579999999999999999999976 23455677788777777888889999999999632 334455
Q ss_pred HHHhCCCeEEEEeeCCCccc-cHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHH----HHHHhhhc----CCeE
Q psy2924 122 AVARTCSLIFIVLDVLKPLG-HKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKT----ILSEYRIH----NADI 192 (225)
Q Consensus 122 ~~~~~~~~~l~~~d~~~~~~-~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~----i~~~l~~~----~~~v 192 (225)
..+..+|++++++|+..... +......+++.++ .+.+.+-++.+-.+....+. +.+.+... ...+
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~------ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN------IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTT------CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcC------CCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 66788999999999875321 1112223344433 34455556666666543333 33333332 2335
Q ss_pred EEee---cCChHHHHHHHhc
Q psy2924 193 TLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 193 i~~~---~~~~~~~~~~~~~ 209 (225)
+..| +.+++++.+.+..
T Consensus 166 i~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 5545 3578887766655
No 224
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.74 E-value=2.3e-09 Score=93.12 Aligned_cols=46 Identities=20% Similarity=0.067 Sum_probs=42.1
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA 96 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~ 96 (225)
++++|.+.+ |+.++|+||||||||||+|+|+|+++| ..|.|.++|.
T Consensus 166 ~~l~~~i~~--G~~i~ivG~sGsGKSTll~~l~~~~~~-----------~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQL--ERVIVVAGETGSGKTTLMKALMQEIPF-----------DQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHT--TCCEEEEESSSSCHHHHHHHHHTTSCT-----------TSCEEEEESS
T ss_pred HHHHHHHhc--CCEEEEECCCCCCHHHHHHHHHhcCCC-----------CceEEEECCc
Confidence 567888889 999999999999999999999999988 8899998864
No 225
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.74 E-value=4.1e-08 Score=75.76 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=57.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||++.+++-.. ...+..|+.+.....+.+++.. +.++|+||....... ....+..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL-------RPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT-------GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH-------HHHhccCC
Confidence 4799999999999999999986543 3455566555444556677755 458899997532211 12245678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 78 d~~i~v~d~~~~ 89 (186)
T 1mh1_A 78 DVSLICFSLVSP 89 (186)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCh
Confidence 999999998764
No 226
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.74 E-value=8.9e-08 Score=75.34 Aligned_cols=84 Identities=19% Similarity=0.123 Sum_probs=53.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++........|....+.....+.+++. .+.++|+||.... .......+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-------RSIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC-------HHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-------hhhHHHHHhh
Confidence 568999999999999999999876532111111112222344566664 5788999985431 1233456678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 101 ~d~iilv~d~~~~ 113 (199)
T 2p5s_A 101 ADGVLLLYDVTCE 113 (199)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCh
Confidence 9999999998754
No 227
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.74 E-value=9.8e-08 Score=75.21 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=57.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++.... ..++.|+.......+.+++ ..+.++|+||........ ...+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP-------YSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC-------GGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH-------HHHHhc
Confidence 457999999999999999999987643 4555665544444555554 456889999965432211 234567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 96 ~d~~i~v~d~~~~ 108 (201)
T 3oes_A 96 VHGYVLVYSVTSL 108 (201)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEeCCCH
Confidence 8999999998754
No 228
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.2e-07 Score=74.24 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=58.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++... ...+..|+.......+.+++. .+.++|+||... . ......+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchhhhhcc
Confidence 46799999999999999999998653 234555544334445666664 478899998754 1 223445677
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 99 ~d~iilv~D~~~~ 111 (196)
T 2atv_A 99 GEGFVLVYDITDR 111 (196)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 8999999998764
No 229
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.72 E-value=1.3e-07 Score=72.67 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||++.+++-... .+..|+.+.....+.+++. .+.++|++|... ...++++
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQ--VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCC--CCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CcCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 47999999999999999999986542 1333433333445667775 457789998643 2355779
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 74 d~~ilv~D~~~~ 85 (178)
T 2iwr_A 74 DAVIFVFSLEDE 85 (178)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 999999998765
No 230
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.72 E-value=3e-08 Score=76.34 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=48.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+.+-.. ...++.|+.+.....+.+++.. +.++|+||....... ....+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL-------RPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------CEEECCCC-CTTTTT-------GGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-------HHhhccC
Confidence 45799999999999999999997653 3456666654444445556544 458999986432211 1234577
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 80 ~d~~i~v~d~~~~ 92 (182)
T 3bwd_D 80 ADVFILAFSLISK 92 (182)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998764
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.72 E-value=6.3e-09 Score=89.31 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=36.5
Q ss_pred eccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 45 ~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
++ |++++|+||||||||||+++|+|.+.+ ..|.|.+.+.++
T Consensus 127 ~~--g~vi~lvG~nGaGKTTll~~Lag~l~~-----------~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EK--PYVIMFVGFNGSGKTTTIAKLANWLKN-----------HGFSVVIAASDT 167 (328)
T ss_dssp CS--SEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEECC
T ss_pred CC--CeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEeecc
Confidence 45 899999999999999999999999988 888888877654
No 232
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=7.4e-09 Score=80.66 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=28.7
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+|.+.. |..++|+||||+|||||++++++...+
T Consensus 32 ~~~~~~--g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 32 NFNPEE--GKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp SCCGGG--CCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred hccccC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355667 889999999999999999999998765
No 233
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.72 E-value=3.4e-08 Score=78.35 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=59.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE--EEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ--LLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++++|++|||||||++.+++-.. ...++.|+.+.....+.+++..+. ++|+||....... ....+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL-------RPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-------GGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-------HHHHhcc
Confidence 46899999999999999999986443 456677776666666777776655 8999997432211 1224568
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 102 ~d~~i~v~d~~~~ 114 (204)
T 4gzl_A 102 TDVFLICFSLVSP 114 (204)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998764
No 234
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.71 E-value=6.5e-08 Score=75.26 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
.-.++++|++|||||||+|.+.+-... ...| |.......+.+++..+.++|+||........ ...+++++
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~~~~d 91 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYW-------RCYFSDTD 91 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCC-------SSSSTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHH-------HHHhhcCC
Confidence 567999999999999999999765432 1111 3333445677888899999999975432221 12346789
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|...+
T Consensus 92 ~ii~v~d~~~~ 102 (189)
T 2x77_A 92 AVIYVVDSTDR 102 (189)
T ss_dssp EEEEEEETTCC
T ss_pred EEEEEEeCCCH
Confidence 99999998765
No 235
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.71 E-value=3.3e-09 Score=100.78 Aligned_cols=38 Identities=16% Similarity=-0.040 Sum_probs=32.5
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+...++++|+ +. |++++|+||||||||||+++|+|+..
T Consensus 595 ~~vlndisl~-~~--g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 595 PFIANPLNLS-PQ--RRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCCCEEEEEC-SS--SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeeeccccc-CC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 4466777888 66 89999999999999999999999753
No 236
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.71 E-value=5e-09 Score=85.90 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=25.8
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
-.++...+++||++++ |.++||+||||||||||+++|+|+.
T Consensus 9 ~~~~~~l~~isl~i~~--g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMR--PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CC--SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCCC--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455678999999999 9999999999999999999999965
No 237
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.71 E-value=6.6e-08 Score=77.20 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=48.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++-.. ...+..|+.+.....+.+++. .+.++|+||..... ......+.++
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 4799999999999999999998653 344555655545556677775 57789999854321 1122345678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 107 d~~i~v~d~~~~ 118 (214)
T 2j1l_A 107 SVLLLCFDVTSP 118 (214)
T ss_dssp EEEEEEEETTCH
T ss_pred CEEEEEEECcCH
Confidence 899999998754
No 238
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.70 E-value=7.9e-08 Score=76.24 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=60.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|+|||||++.+++-.. ..+|+.|+.+.....+.+++. .+.++|+||....... ....+.+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 80 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL-------RPLSYRG 80 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH-------HHhhccC
Confidence 45799999999999999999997553 356667766655566677775 6788999997543211 1224578
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 81 ~d~~ilv~d~~~~ 93 (212)
T 2j0v_A 81 ADIFVLAFSLISK 93 (212)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998764
No 239
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.70 E-value=6.3e-08 Score=89.01 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=51.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE-------cCceEEEEeCCCCCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-------KGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~-------~g~~i~~~d~~g~~~~~~ 111 (225)
...|+|+|++|+|||||+|.|+|....+ ++++||++.+.|...| .+..+.++||||+.....
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~ 106 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK 106 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccc
Confidence 3579999999999999999999987533 7889999999998654 467899999999986443
No 240
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.69 E-value=1.2e-07 Score=83.95 Aligned_cols=40 Identities=25% Similarity=0.114 Sum_probs=31.4
Q ss_pred hhccCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 28 LITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 28 ~~~~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
...+.++...++++|+| +|+|+||||||||+|+|+|...+
T Consensus 18 ~~~y~~~~vl~~vsf~I--------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 18 PNQVYRKSVKRGFEFTL--------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp CCCTTTTTCC-CCCEEE--------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred ceeECCEEEecCCCEEE--------EEECCCCCcHHHHHHHHhCCCCC
Confidence 33455556677777774 99999999999999999998864
No 241
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.69 E-value=1.2e-07 Score=82.11 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..++++++++ .|+|+|++|||||||+|+|+|..
T Consensus 26 ~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 26 ALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CC----CCCC-----EEEEECBTTSSHHHHHHHHHTSC
T ss_pred ccccccccCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence 4555666755 69999999999999999999954
No 242
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.68 E-value=1.8e-07 Score=72.97 Aligned_cols=77 Identities=21% Similarity=0.136 Sum_probs=52.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++-... ..+..| .+.....+.+++.. +.++|++|.... + .+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~---~~~~ 85 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYV-QEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q---FAAW 85 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCH---------H---HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCC-cceEEEEEEECCEEEEEEEEECCCChhh---------h---eecC
Confidence 357999999999999999988775432 122222 22233467788855 456899986431 1 5567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 86 ~~~~i~v~d~~~~ 98 (184)
T 3ihw_A 86 VDAVVFVFSLEDE 98 (184)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 8999999998764
No 243
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.68 E-value=2.1e-08 Score=80.35 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=55.8
Q ss_pred CeeEEEEcCCCCCHHHHHHH-HhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLST-LAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~-l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|.+|||||||+|. +.|... .....+++|.......+...+..+.++|+||....... ....+.+
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 87 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL-------RDGYYIQ 87 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC-------CHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH-------HHHHHhc
Confidence 34799999999999999999 555433 33455555655444333223356788999985432211 1345678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|....
T Consensus 88 ~~~~i~v~d~~~~ 100 (221)
T 3gj0_A 88 AQCAIIMFDVTSR 100 (221)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998764
No 244
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.68 E-value=7.5e-08 Score=81.54 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=21.4
Q ss_pred cCCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCC-Ccc
Q psy2924 31 PKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV-YSE 75 (225)
Q Consensus 31 ~~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~-~~~ 75 (225)
+.++...++++|.| +|+|+||||||||+|+|+|. ..+
T Consensus 8 ~~~~~~l~~~~~~I--------~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL--------MVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp ----------CEEE--------EEEEETTSSHHHHHHHHHC-----
T ss_pred ECCEEEEcCCCEEE--------EEECCCCCCHHHHHHHHhCCCccC
Confidence 34455677777764 99999999999999999997 445
No 245
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=6.3e-07 Score=67.87 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=53.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++++|++|||||||+|.+++..... .+..|........+.+++. .+.++|+||..... ......+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 74 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISK 74 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhccc
Confidence 3479999999999999999999854321 1222211112223444543 57889999965321 223345677
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 75 ~~~~i~v~d~~~~ 87 (172)
T 2erx_A 75 GHAFILVYSITSR 87 (172)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 8999999998754
No 246
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=3e-07 Score=71.73 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=53.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||+|.+++-... ..+..|......-.+.+++. .+.++|+||..... ......+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFR-DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCC-CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCC-CcccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 457999999999999999999975432 12222211111223344543 57889999854321 223345677
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 80 ~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 80 GHAFILVFSVTSK 92 (199)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 8999999998754
No 247
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.66 E-value=6.1e-09 Score=88.24 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=29.9
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY 93 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~ 93 (225)
|++.. |++++|+||||||||||+|+|+|+..| ..|.+.+
T Consensus 164 f~~l~--geiv~l~G~sG~GKSTll~~l~g~~~~-----------~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLK--GKISTMAGLSGVGKSSLLNAINPGLKL-----------RVSEVSE 202 (301)
T ss_dssp HHHHS--SSEEEEECSTTSSHHHHHHHHSTTCCC-----------C------
T ss_pred HHHhc--CCeEEEECCCCCcHHHHHHHhcccccc-----------cccceec
Confidence 55666 899999999999999999999999987 6677666
No 248
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.65 E-value=3.5e-07 Score=71.32 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++-.. ...|+.|+.+.....+.+++. .+.++|++|...... + ...+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~----~~~~~~ 91 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C----ERYLNW 91 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T----HHHHTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H----HHHHhh
Confidence 35799999999999999999987653 456666665544445666664 466799998653211 1 235678
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 92 ~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 92 AHAFLVVYSVDSR 104 (187)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998754
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.65 E-value=9e-09 Score=82.09 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=45.4
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEe
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
++..-+ |..++|+||||||||||++.|++.++ .....+.|||.|..|. ++|.++.+++
T Consensus 13 ~~~~~~--g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs 72 (197)
T 3ney_A 13 NLYFQG--RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFIS 72 (197)
T ss_dssp ---CCS--CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECC
T ss_pred cCCCCC--CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceecc
Confidence 333345 88999999999999999999998775 3456678899999987 5888777665
No 250
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=87.72 Aligned_cols=80 Identities=28% Similarity=0.354 Sum_probs=50.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc------c-cc-------------------------------cc------ccee
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE------V-AA-------------------------------YE------FTTL 84 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~------v-~~-------------------------------~~------~tt~ 84 (225)
+.+++|+|+||||||||+|+|+|...+ + +. .| ++|+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 779999999999999999999974321 1 11 11 1222
Q ss_pred eccceEE--EEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 85 TTVPGCI--KYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 85 ~~~~G~i--~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
+...+.. ...|.++.++||+|+... ...+...+|++++++|...
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~ 199 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAG 199 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC-
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCc
Confidence 2111111 135678899999997532 1334678999999988754
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.64 E-value=1.5e-08 Score=79.25 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=34.4
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
+.+ |++++|+|+||||||||+++|++. + ..|.+.+++.++
T Consensus 6 i~~--g~~i~l~G~~GsGKSTl~~~La~~--~-----------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLG--GNILLLSGHPGSGKSTIAEALANL--P-----------GVPKVHFHSDDL 45 (191)
T ss_dssp CCT--TEEEEEEECTTSCHHHHHHHHHTC--S-----------SSCEEEECTTHH
T ss_pred CCC--CeEEEEECCCCCCHHHHHHHHHhc--c-----------CCCeEEEcccch
Confidence 566 899999999999999999999997 4 568888887654
No 252
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.63 E-value=2.7e-08 Score=96.82 Aligned_cols=40 Identities=18% Similarity=0.000 Sum_probs=31.3
Q ss_pred CCCCCCCceeec-----cCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 35 GGGPGEGFDVAK-----TGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 35 ~~~~~is~~i~~-----~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
...++++|++.. +.|++++|+||||+||||||+++ |+..+
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 456667777654 12689999999999999999999 88754
No 253
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.62 E-value=2.1e-07 Score=73.39 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=56.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++|+|++|||||||++.+++...+ ..+..|+.......+.+++. .+.++|+||....... ....+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL-------RPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTT-------GGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHH-------HHHhcCCC
Confidence 47999999999999999999986543 33444443333445677775 5778899996432111 11245678
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998754
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=8e-09 Score=82.16 Aligned_cols=50 Identities=28% Similarity=0.279 Sum_probs=35.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccc--cccccceeeccceEEEEcCceEEE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEV--AAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v--~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
|..++|+||||||||||+++|+|+++.. .....||+.+..|. ++|.++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~ 55 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYF 55 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEE
Confidence 7899999999999999999999987421 12233466667776 36665544
No 255
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.62 E-value=1.1e-07 Score=82.17 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=28.8
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
++.+++ |.+++|+||||||||||++.+++..
T Consensus 125 ~ggi~~--G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIET--QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEES--SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCC--CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467888 9999999999999999999999987
No 256
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.62 E-value=2.8e-08 Score=86.56 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=43.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC-------CccccccccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV-------YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~-------~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
+..++++|.+|+|||||+|+|+|. ...++++|+||+++.... +. ..+.++||||+....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINHH 225 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCTT
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcHH
Confidence 568999999999999999999986 234789999998765433 33 237899999997643
No 257
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.61 E-value=7.5e-07 Score=78.25 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=86.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccc------e-------------EEEEcCceEEEEeCCCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVP------G-------------CIKYKGAKIQLLDLPGIIE 108 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~------G-------------~i~~~g~~i~~~d~~g~~~ 108 (225)
.-.++++|.+|+|||||+|+|++... ....|+.+|..... + ........+.++|+||...
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 45799999999999999999999643 22233333321100 0 0011125788999999532
Q ss_pred CccCCcchHHHHHHHHhCCCeEEEEeeCCCcc--ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHHHHHHHHHhh
Q psy2924 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPL--GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYR 186 (225)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~~~~i~~~l~ 186 (225)
+.......+..+|++++++|+.... .+......+++.++. .+.+.+-++.+-.+........+.+.
T Consensus 88 -------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-----~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 88 -------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-----KNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp -------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-----CCEEEEEECccccchHHHHHHHHHHH
Confidence 3445566678899999999987643 122222234444432 34555556666566654444333332
Q ss_pred ----hc---CCeEEEee---cCChHHHHHHHhc
Q psy2924 187 ----IH---NADITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 187 ----~~---~~~vi~~~---~~~~~~~~~~~~~ 209 (225)
.. ...++.+| ..+++++++.+..
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~ 188 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEE 188 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence 22 12355555 3578888877765
No 258
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.61 E-value=6.7e-08 Score=75.49 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=53.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC--ceEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
--.++|+|++|||||||+|.+++........+..+.+.....+.+++ ..+.++|+||... +.......+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHcc
Confidence 34799999999999999999998553211111111111223344444 4578889887421 12234556788
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 96 ~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 96 AMGFILMYDITNE 108 (191)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEECcCH
Confidence 9999999998754
No 259
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.60 E-value=4.3e-09 Score=89.41 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=33.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..++++|+|++ |++++|+||||||||||+++|+|++
T Consensus 115 vL~~vsl~i~~--Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPK--KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTT--CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecC--CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45678899999 9999999999999999999999986
No 260
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.7e-07 Score=85.32 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=64.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccc-------------------------------cccceeeccceEEEEcCce
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAA-------------------------------YEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~-------------------------------~~~tt~~~~~G~i~~~g~~ 97 (225)
.-.++|+|.+|+|||||++.|++....+.. .+++|.+.....+...+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 246 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 246 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCE
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCce
Confidence 457999999999999999999976443322 2677888888888888899
Q ss_pred EEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 98 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
+.++|+||... +.......+..+|++++++|+..
T Consensus 247 ~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 247 FTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 99999999743 33444455678999999999865
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.60 E-value=1.3e-08 Score=79.86 Aligned_cols=49 Identities=31% Similarity=0.336 Sum_probs=35.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccc--cccccceeeccceEEEEcCceEE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEV--AAYEFTTLTTVPGCIKYKGAKIQ 99 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v--~~~~~tt~~~~~G~i~~~g~~i~ 99 (225)
|.+++|+||||||||||+++|+|+.++. .....||+.+..|.+ +|.++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~ 51 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYN 51 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeee
Confidence 4589999999999999999999988642 123345666666664 555444
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.58 E-value=7e-08 Score=75.09 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=45.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCcc-ccccccce-eeccceEEEE-----cCceEEEEeCCCCCCCccCCcchHHHHHH
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSE-VAAYEFTT-LTTVPGCIKY-----KGAKIQLLDLPGIIEGAKDGKGRGRQVIA 122 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~-v~~~~~tt-~~~~~G~i~~-----~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 122 (225)
-.++|+|++|||||||++.+++...+ ...+..|+ .+...-.+.+ ....+.++|++|....... ...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST-------HPH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT-------SHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh-------hHH
Confidence 36999999999999999999997533 23333332 1111111111 2346778899885321111 123
Q ss_pred HHhCCCeEEEEeeCCCc
Q psy2924 123 VARTCSLIFIVLDVLKP 139 (225)
Q Consensus 123 ~~~~~~~~l~~~d~~~~ 139 (225)
.+.++++++.++|...+
T Consensus 76 ~~~~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKG 92 (184)
T ss_dssp HHHHSEEEEEEEEGGGC
T ss_pred HccCCcEEEEEEeCCcc
Confidence 44567888788887654
No 263
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.58 E-value=1.6e-07 Score=79.33 Aligned_cols=87 Identities=26% Similarity=0.322 Sum_probs=53.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-c-----ccccc---cceeecc---------------------------------
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-E-----VAAYE---FTTLTTV--------------------------------- 87 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~-----v~~~~---~tt~~~~--------------------------------- 87 (225)
..++|+|.+|||||||+|+|+|... | ++.+| .+|+.+.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHHH
Confidence 4799999999999999999999764 3 33455 4555321
Q ss_pred -----ce----------EEEE---cCceEEEEeCCCCCCCcc----CCc--chHHHHHHHHhCCCeEEEEeeC
Q psy2924 88 -----PG----------CIKY---KGAKIQLLDLPGIIEGAK----DGK--GRGRQVIAVARTCSLIFIVLDV 136 (225)
Q Consensus 88 -----~G----------~i~~---~g~~i~~~d~~g~~~~~~----~~~--~~~~~~~~~~~~~~~~l~~~d~ 136 (225)
.| .+.+ ++.++.++||||+..... ... .+.......+..+|+++++++.
T Consensus 105 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~ 177 (315)
T 1jwy_B 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTP 177 (315)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 00 0111 346789999999864221 111 2334455677889988888875
No 264
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.58 E-value=1.8e-08 Score=79.66 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=25.9
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|+++.+ |++++|+||||||||||+++|+|+.+
T Consensus 1 s~~m~~--g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNK--ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CC--CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCC--CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455667 89999999999999999999999863
No 265
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.57 E-value=2.1e-07 Score=73.85 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=56.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEc---CceEEEEeCCCCCCCccCCcchHH-HHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYK---GAKIQLLDLPGIIEGAKDGKGRGR-QVIAVA 124 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~---g~~i~~~d~~g~~~~~~~~~~~~~-~~~~~~ 124 (225)
.-.++|+|++|||||||++.+++... ...|+.++. ....+.++ +..+.++|+||.... .. -....+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITD--SSAIYKVNNNRGNSLTLIDLPGHESL-------RFQLLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSC--EEEEEECSSTTCCEEEEEECCCCHHH-------HHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcce--eeEEEEecCCCccEEEEEECCCChhH-------HHHHHHHHH
Confidence 35799999999999999999997653 345554443 23346666 457899999986421 11 122346
Q ss_pred hCCCeEEEEeeCCC
Q psy2924 125 RTCSLIFIVLDVLK 138 (225)
Q Consensus 125 ~~~~~~l~~~d~~~ 138 (225)
+.++++++++|...
T Consensus 77 ~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 77 SSARAVVFVVDSAA 90 (214)
T ss_dssp GGEEEEEEEEETTT
T ss_pred hhCCEEEEEEECCC
Confidence 78899999999875
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.57 E-value=1.6e-08 Score=80.75 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=35.2
Q ss_pred eccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 45 ~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
++ |++++|+||||||||||+++|+|++.+.+ +..|.+.++|..+
T Consensus 20 ~~--g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--------~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PG--RQLVALSGAPGSGKSTLSNPLAAALSAQG--------LPAEVVPMDGFHL 63 (208)
T ss_dssp CS--CEEEEEECCTTSCTHHHHHHHHHHHHHTT--------CCEEEEESGGGBC
T ss_pred CC--CeEEEEECCCCCCHHHHHHHHHHHHhhcC--------CceEEEecCCCcC
Confidence 45 89999999999999999999999987510 1467787777644
No 267
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.56 E-value=4.4e-08 Score=81.97 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
...++|+|.+|||||||+|+|+|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 34799999999999999999999765
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.56 E-value=2.3e-08 Score=78.11 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=34.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc--ccccccceeeccceEEEEcCceEEE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE--VAAYEFTTLTTVPGCIKYKGAKIQL 100 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~--v~~~~~tt~~~~~G~i~~~g~~i~~ 100 (225)
|+.++|+||||||||||+++|++...+ ....+.||+.|..|. ++|.++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge--~~g~~~~~ 56 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYF 56 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc--cCCCeeEE
Confidence 789999999999999999999997652 233455677666664 35555444
No 269
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.55 E-value=2.8e-07 Score=71.27 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=42.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~ 107 (225)
.++|+|++|||||||+|.+++.....+..|++|.+... +.+. .+.++|+||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK--NHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET--TEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC--CEEEEECCCcc
Confidence 58999999999999999999987777777887765533 3333 78889999964
No 270
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.55 E-value=2e-08 Score=85.25 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=36.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
|++++|+||||||||||+++|+|++.| ..|.|.+.+.++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~-----------~~g~V~l~g~D~ 140 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN-----------LGKKVMFCAGDT 140 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT-----------TTCCEEEECCCC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEeecC
Confidence 889999999999999999999999988 889999888764
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=8.2e-09 Score=87.77 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=26.6
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++.+ |++++|+|+||||||||+|+|+|...+
T Consensus 168 ~~~~~--G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 168 IPHFQ--DKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp GGGGT--TSEEEEEESHHHHHHHHHHHHCC----
T ss_pred HhhcC--CCEEEEECCCCCCHHHHHHHhcccccc
Confidence 67778 999999999999999999999999876
No 272
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=7.6e-07 Score=71.43 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceE--EEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKI--QLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-+++|+|.+|||||||+|.++|... .+..++.++.+.....+.++|..+ .++|++|.... ........+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~------~~~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE------NEWLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH------HHHHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch------hhhHHHHHHhh
Confidence 4699999999999999999998654 345566555554455677888754 56788764320 00001112345
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
+++++.+++....
T Consensus 112 a~~~ilVydvt~~ 124 (211)
T 2g3y_A 112 GDAYLIVYSITDR 124 (211)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 7888888887653
No 273
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.53 E-value=2.2e-07 Score=78.45 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=61.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEE--EEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ--LLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++++|.+|+|||||++.+.+-.. ...++.|+.+.....+.+++..+. ++|+||....... ....+..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~ 226 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL-------RPLSYPQ 226 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT-------GGGGCTT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH-------HHHhccC
Confidence 46799999999999999999986543 456777877766667778887655 8999996532211 1224568
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 227 ~d~~i~v~d~~~~ 239 (332)
T 2wkq_A 227 TDVFLICFSLVSP 239 (332)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEeCCCH
Confidence 8999999998764
No 274
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.53 E-value=2.1e-07 Score=74.33 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=55.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++-.. ...|..|+.......+.+++. .+.++|++|....... ....+.+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV-------RPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT-------GGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH-------HHHHcCC
Confidence 45799999999999999999987653 345555544434444555554 5678899986432111 1234567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 99 ~d~~i~v~d~~~~ 111 (214)
T 3q3j_B 99 SDAVLLCFDISRP 111 (214)
T ss_dssp CSEEEEEEETTCT
T ss_pred CeEEEEEEECcCH
Confidence 9999999998765
No 275
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.53 E-value=5.4e-07 Score=81.04 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=61.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-------------------------------cccccccceeeccceEEEEcCce
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-------------------------------EVAAYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-------------------------------~v~~~~~tt~~~~~G~i~~~g~~ 97 (225)
.-.++|+|.+|+|||||++.|++... +....+++|.+.....+...+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 35799999999999999999975411 12223466776666666667788
Q ss_pred EEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 98 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.++|+||... +.......+..+|++++++|+...
T Consensus 113 ~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 113 FTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 99999999743 345556677889999999998763
No 276
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=2.7e-07 Score=73.04 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=54.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.|+|+|++|||||||++.+.+-..+ ..+..|+.......+.+++. .+.++|+||....... ....+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 96 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-------RPLSYPD 96 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-------GGGGCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-------HHhhcCC
Confidence 457999999999999999999986543 33444544434445667774 5678899996532211 1224567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 97 ~d~~i~v~d~~~~ 109 (207)
T 2fv8_A 97 TDVILMCFSVDSP 109 (207)
T ss_dssp CCEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998754
No 277
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.53 E-value=1.1e-07 Score=72.30 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=24.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
|+.++|+||||+|||||++++++...+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999997754
No 278
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.93 E-value=1.1e-08 Score=80.96 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=57.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE--EEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI--QLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+.+-.. ...+..|+.+.....+.+++..+ .++|+||..... ......+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 45799999999999999999986543 34566666655555666666554 478999864321 112234567
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 102 ~d~iilv~D~~~~ 114 (204)
T 3th5_A 102 TDVFLICFSLVSP 114 (204)
Confidence 8888888887543
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.52 E-value=1.4e-08 Score=86.17 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=34.7
Q ss_pred eccCCeeEEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEE---cCce
Q psy2924 45 AKTGDARIGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKY---KGAK 97 (225)
Q Consensus 45 ~~~~g~~v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~---~g~~ 97 (225)
.+ |+++||+|+||||||||+++|+|+.. | .+|.+.+ +|..
T Consensus 78 ~~--g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----------~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RI--PYIISIAGSVAVGKSTTARVLQALLSRWP-----------EHRRVELITTDGFL 122 (308)
T ss_dssp CC--CEEEEEEECTTSSHHHHHHHHHHHHTTST-----------TCCCEEEEEGGGGB
T ss_pred CC--CEEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CCCeEEEEecCCcc
Confidence 55 89999999999999999999999876 6 7888877 6654
No 280
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.52 E-value=4.2e-07 Score=82.65 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=75.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc------ccccccceeeccceEEEEc----CceEEEEeCCCCCCCccCCcchHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE------VAAYEFTTLTTVPGCIKYK----GAKIQLLDLPGIIEGAKDGKGRGR 118 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~------v~~~~~tt~~~~~G~i~~~----g~~i~~~d~~g~~~~~~~~~~~~~ 118 (225)
.-+++|+|.+|||||||+|.+++.... ++....++..+..|.+.++ +..+.++|+||.......
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~------ 114 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS------ 114 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH------
Confidence 457999999999999999999987631 1122222222222233333 467889999995332211
Q ss_pred HHHHHHhCCCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCCCCCH--HHHHHHHHHhhhcCCeEEEee
Q psy2924 119 QVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDL--DTVKTILSEYRIHNADITLRY 196 (225)
Q Consensus 119 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~--~~~~~i~~~l~~~~~~vi~~~ 196 (225)
....+.+++++++++|.........+.. .+...+ ...+.+.+-+..+-.+. ...+.+.+.+...+..++.+|
T Consensus 115 -~~~~l~~~d~ii~V~D~s~~~~~~~~~~-~l~~~~----~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 115 -HQFFMTRSSVYMLLLDSRTDSNKHYWLR-HIEKYG----GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp -CHHHHHSSEEEEEEECGGGGGGHHHHHH-HHHHHS----SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred -HHHHccCCcEEEEEEeCCCchhHHHHHH-HHHHhC----CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence 1234567999999999865433222232 333321 12444442222222211 012334444444444433333
Q ss_pred ---cCChHHHHHHHhc
Q psy2924 197 ---DATSDDLIDVVEG 209 (225)
Q Consensus 197 ---~~~~~~~~~~~~~ 209 (225)
+.+++++...+..
T Consensus 189 A~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKS 204 (535)
T ss_dssp C-----CTTHHHHHHH
T ss_pred cCcccCHHHHHHHHHH
Confidence 4567777665544
No 281
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.51 E-value=1e-07 Score=89.52 Aligned_cols=87 Identities=25% Similarity=0.368 Sum_probs=60.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cccccccc--------------eeeccceE-----------------------
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFT--------------TLTTVPGC----------------------- 90 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~t--------------t~~~~~G~----------------------- 90 (225)
+-.|+|+|++|+|||||+|+|+|... |++..|.| |++...|.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 67899999999999999999999875 67777777 33221111
Q ss_pred ----------------EEEcC----ceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 91 ----------------IKYKG----AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 91 ----------------i~~~g----~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.+.. ..+.++||||+..... ........++.+|++++++|....
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~ 213 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP 213 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc
Confidence 11111 4688999999764211 123344566889999999998654
No 282
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.50 E-value=2.2e-08 Score=86.85 Aligned_cols=37 Identities=30% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-c
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-E 75 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-~ 75 (225)
+.+++++. .+ |++++|+|+||||||||+|+|+|... +
T Consensus 205 gl~~L~~~-~~--G~~~~lvG~sG~GKSTLln~L~g~~~~~ 242 (358)
T 2rcn_A 205 GLKPLEEA-LT--GRISIFAGQSGVGKSSLLNALLGLQNEI 242 (358)
T ss_dssp THHHHHHH-HT--TSEEEEECCTTSSHHHHHHHHHCCSSCC
T ss_pred CHHHHHHh-cC--CCEEEEECCCCccHHHHHHHHhcccccc
Confidence 33444443 35 78999999999999999999999987 7
No 283
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.50 E-value=1.2e-06 Score=77.96 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=61.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc-------------------------------ccccccceeeccceEEEEcCce
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE-------------------------------VAAYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~-------------------------------v~~~~~tt~~~~~G~i~~~g~~ 97 (225)
.-.++++|.+|+|||||++.|++.... ....+++|.+.....+...+..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 457999999999999999999553211 1112566777666667778889
Q ss_pred EEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 98 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.++|+||... +.......+..+|++++++|+...
T Consensus 97 ~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 97 FTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCC
Confidence 99999999643 234445556789999999998754
No 284
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.49 E-value=7.2e-07 Score=75.29 Aligned_cols=115 Identities=13% Similarity=0.001 Sum_probs=66.6
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchH
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRG 117 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 117 (225)
++++|+ + |++++++|+||+||||++..|++...+ ..|.+.+.+.+++ + ....
T Consensus 91 ~~i~~~--~--~~~i~i~g~~G~GKTT~~~~la~~~~~-----------~~~~v~l~~~d~~-------~------~~~~ 142 (295)
T 1ls1_A 91 RLPVLK--D--RNLWFLVGLQGSGKTTTAAKLALYYKG-----------KGRRPLLVAADTQ-------R------PAAR 142 (295)
T ss_dssp CCCCCC--S--SEEEEEECCTTTTHHHHHHHHHHHHHH-----------TTCCEEEEECCSS-------C------HHHH
T ss_pred ceeecC--C--CeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCeEEEecCCcc-------c------HhHH
Confidence 578887 6 899999999999999999999999876 5666766543321 0 0111
Q ss_pred HHHHHHHh--CCCeEEEEee-CCCccccHHHHHHHHHhcccccCCCCCcccccCC-CCCCCHHHHHHHHHHhhhc
Q psy2924 118 RQVIAVAR--TCSLIFIVLD-VLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVP-QSELDLDTVKTILSEYRIH 188 (225)
Q Consensus 118 ~~~~~~~~--~~~~~l~~~d-~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp-~~~LD~~~~~~i~~~l~~~ 188 (225)
.|...... +.+++ ... ...+. +.....++.+ .......+.+|+| +.++|.....++.+.....
T Consensus 143 ~ql~~~~~~~~l~~~--~~~~~~~p~---~l~~~~l~~~---~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 143 EQLRLLGEKVGVPVL--EVMDGESPE---SIRRRVEEKA---RLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHTCCEE--ECCTTCCHH---HHHHHHHHHH---HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCeEEE--EcCCCCCHH---HHHHHHHHHH---HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 22222222 22221 111 11111 1222233221 0124567779999 9999987777766665543
No 285
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.49 E-value=1.4e-06 Score=68.28 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=52.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceE--EEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKI--QLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-.++|+|.+|||||||+|.++|... .+..++.++.+.....+.++|..+ ..+|+++..... . .+. ...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~-~--~~~---~~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN-E--WLH---DHCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----C--TTG---GGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh-h--hHH---Hhhccc
Confidence 3699999999999999999997543 344556555554556677888754 457887653211 1 111 123456
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
+++.+.+++....
T Consensus 81 ~~~~i~v~dv~~~ 93 (192)
T 2cjw_A 81 GDAYLIVYSITDR 93 (192)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 7888888887654
No 286
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.48 E-value=3.9e-07 Score=72.49 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=48.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccc--cccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHh-
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEV--AAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVAR- 125 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v--~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~- 125 (225)
...++|+|++|+|||||++.+++..... ..+..++ + ..+.+..+.++|+||..... ......+.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~-~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 78 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----A-ADYDGSGVTLVDFPGHVKLR-------YKLSDYLKT 78 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----E-TTGGGSSCEEEECCCCGGGT-------HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----E-EEeeCceEEEEECCCcHHHH-------HHHHHHHHh
Confidence 3579999999999999999999866421 1121111 1 11255678899999975321 11122223
Q ss_pred ---CCCeEEEEeeCC
Q psy2924 126 ---TCSLIFIVLDVL 137 (225)
Q Consensus 126 ---~~~~~l~~~d~~ 137 (225)
.++++++++|..
T Consensus 79 ~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 79 RAKFVKGLIFMVDST 93 (218)
T ss_dssp HGGGEEEEEEEEETT
T ss_pred ccccCCEEEEEEECC
Confidence 378889999987
No 287
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.48 E-value=3.6e-08 Score=83.56 Aligned_cols=31 Identities=29% Similarity=0.227 Sum_probs=27.2
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++.. |++++|+|+||||||||+|+|+ ...+
T Consensus 160 ~~~l~--G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 160 VDYLE--GFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp HHHTT--TCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred Hhhcc--CcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 44556 8999999999999999999999 8776
No 288
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.46 E-value=3.9e-08 Score=89.13 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=39.5
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCce
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~ 97 (225)
++++.+.. |..++|+||||||||||+|+|+|+..| ..|.+.+.|..
T Consensus 252 ~l~~~v~~--g~~i~I~GptGSGKTTlL~aL~~~i~~-----------~~giitied~~ 297 (511)
T 2oap_1 252 YLWLAIEH--KFSAIVVGETASGKTTTLNAIMMFIPP-----------DAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHT--TCCEEEEESTTSSHHHHHHHHGGGSCT-----------TCCEEEEESSC
T ss_pred HHHHHHhC--CCEEEEECCCCCCHHHHHHHHHhhCCC-----------CCCEEEEcCcc
Confidence 45667777 889999999999999999999999987 78888877643
No 289
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.46 E-value=1e-07 Score=82.03 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=58.1
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc-------cccccccceeec----------------cceEE--
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS-------EVAAYEFTTLTT----------------VPGCI-- 91 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~-------~v~~~~~tt~~~----------------~~G~i-- 91 (225)
..++++.+.. +.+++|+|+||+|||||+|.|++... .++.-|++|... ..+.+
T Consensus 46 ~~~l~~~~~~--~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~ 123 (341)
T 2p67_A 46 LDAIMPYCGN--TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRP 123 (341)
T ss_dssp HHHHGGGCSC--SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEE
T ss_pred HHhCCcccCC--CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeec
Confidence 3456777777 99999999999999999999986542 123334443210 00111
Q ss_pred ---------------------EEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 92 ---------------------KYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 92 ---------------------~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
.+.+.++.++||||+.... ..+...+|+++++++...
T Consensus 124 ~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 124 VPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGG 181 (341)
T ss_dssp ECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC--
T ss_pred CccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCc
Confidence 1346789999999976421 124578999999988753
No 290
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.46 E-value=5e-07 Score=70.03 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=54.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
-.++++|++|||||||++.+++...+ ..|..|+.......+.+++. .+.++|+||....... ....+..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-------RPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-------GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh-------HHhhcCCC
Confidence 46899999999999999999986532 33444433333344555654 5678899986432111 12245788
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
+++++++|...+
T Consensus 80 ~~~i~v~d~~~~ 91 (184)
T 1m7b_A 80 DAVLICFDISRP 91 (184)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999998764
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.45 E-value=2.4e-08 Score=77.86 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=30.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeecc---ceEEEEcCceEEEEe
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV---PGCIKYKGAKIQLLD 102 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~---~G~i~~~g~~i~~~d 102 (225)
+.++|+|+||||||||++.|+|++.+ . .|.|.+++.++..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-----------~g~~~G~I~~dg~~i~~~~ 47 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE-----------RGLRVAVVKRHAHGDFEID 47 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH-----------TTCCEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh-----------cCCceEEEEEcCcccccCC
Confidence 47999999999999999999999987 5 799999998765444
No 292
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.43 E-value=1.4e-07 Score=78.42 Aligned_cols=57 Identities=33% Similarity=0.468 Sum_probs=38.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-cccccccceeeccceEEEEcCceEEEEeCCCCCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~ 109 (225)
..++++|.||+|||||+|.|.|... .+++.|++|+... .+.+ +..+.++|+||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccC
Confidence 4899999999999999999999876 6788999998653 2333 457889999998753
No 293
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.43 E-value=5.5e-07 Score=71.53 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=55.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCc--eEEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA--KIQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
.-.++|+|++|||||||++.+++...+ ..|..|+.......+.+++. .+.++|+||....... ....+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~ 99 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-------RPLSYPD 99 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT-------GGGGCTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH-------HHhhccC
Confidence 357999999999999999999986543 33444433333344555653 5778999986432111 1224578
Q ss_pred CCeEEEEeeCCCc
Q psy2924 127 CSLIFIVLDVLKP 139 (225)
Q Consensus 127 ~~~~l~~~d~~~~ 139 (225)
++++++++|...+
T Consensus 100 ~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 100 SDAVLICFDISRP 112 (205)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 8999999998764
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.43 E-value=6.1e-08 Score=82.60 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCCce-eeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 39 GEGFD-VAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 39 ~is~~-i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++.+ +.+ |+++||+||||||||||+++|+|+..|
T Consensus 81 ~~~~~~~~~--g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 81 PQQNPDRPV--PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCCSSSCC--CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred cccccCCCC--CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 35553 777 999999999999999999999999876
No 295
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.43 E-value=1.7e-06 Score=75.29 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=55.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeE
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLI 130 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (225)
.++++|.+++|||||++.|+ ..+.|.+.....+.+.+..+.++|+||..+ +.......+..+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~-------f~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK-------TLKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTT-------CHHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHH-------HHHHHHHHHHHCCEE
Confidence 69999999999999999998 234555555555666778899999999754 234445566889999
Q ss_pred EEEeeCCC
Q psy2924 131 FIVLDVLK 138 (225)
Q Consensus 131 l~~~d~~~ 138 (225)
++++| ..
T Consensus 88 ilVvd-~~ 94 (370)
T 2elf_A 88 VLCIP-PQ 94 (370)
T ss_dssp EEEEC-TT
T ss_pred EEEEc-CC
Confidence 99998 54
No 296
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.43 E-value=5.2e-07 Score=82.06 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=61.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC---CCc-------------------cccccccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG---VYS-------------------EVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g---~~~-------------------~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
-..++|+|.+|||||||++.|++ ... +....+++|.......+.+.+..+.++||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 45799999999999999999962 111 11123566766667778888999999999997
Q ss_pred CCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
.... ......+..+|++++++|+...
T Consensus 93 ~df~-------~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 93 ADFT-------EDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hhHH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 5422 3345567789999999998754
No 297
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=2.3e-07 Score=79.38 Aligned_cols=112 Identities=13% Similarity=0.031 Sum_probs=54.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC-CCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAG-VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g-~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
.+.|.||||+|||||+++|++ +..+ ..|.+.+++.++.... +. ..... .....+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~-----------~~g~i~~~~~~~~~~~--~~----~~~~~-------~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP-----------GVYRLKIDVRQFVTAS--NR----KLELN-------VVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT-----------TCCC------------------------C-------CEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC-----------CCCeEEecceeecccc--cc----cceee-------eecccce
Confidence 399999999999999999999 5666 7788888776543110 00 00000 0011111
Q ss_pred EEEEeeCCCc-cccHHHHHHHHHhc----ccc-------cCCCCCcccccCCCCCCCHHHHHHHHHHhhhcC
Q psy2924 130 IFIVLDVLKP-LGHKKLIEHELEGF----GLR-------LNKEPPNIDNQVPQSELDLDTVKTILSEYRIHN 189 (225)
Q Consensus 130 ~l~~~d~~~~-~~~~~~~~~~l~~~----~l~-------~~~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~ 189 (225)
+ .+..... ......+.+.++.+ ++. +...+..+.+|||++ ||+.....+++.+.+..
T Consensus 94 ~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 94 L--EITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp E--EECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred E--EecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1 1111111 11111223333322 221 012345677999998 99999999999988764
No 298
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.40 E-value=1.3e-05 Score=62.57 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=67.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEE--Ec-C--ceEEEEeCCCCCCCccCCcchHHHHHHH
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIK--YK-G--AKIQLLDLPGIIEGAKDGKGRGRQVIAV 123 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~--~~-g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 123 (225)
.-.++|+|.+|||||||++.+.+...+. +..+.+.....+. +. + ..+.++|++|......... .....
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF----DYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC----CHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh----hcccc
Confidence 4579999999999999999999965432 1111222223332 22 2 5688899998643221110 01345
Q ss_pred HhCCCeEEEEeeCCCcc-ccHHHHHHHHHhcccccCCCCCcccccCCCCCCC
Q psy2924 124 ARTCSLIFIVLDVLKPL-GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELD 174 (225)
Q Consensus 124 ~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD 174 (225)
+.+++++++++|..... +..+.+...+..+. ......+.+.+-++.+-++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~-~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAY-KVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHH-HHCTTCEEEEEEECGGGSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHH-hcCCCCcEEEEEeccccCc
Confidence 67899999999987641 22233334444321 0122445555556665555
No 299
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.38 E-value=1.8e-06 Score=74.78 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=29.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccccccc-------cceeeccc--eEEEEcCc--eEEEEeCCCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYE-------FTTLTTVP--GCIKYKGA--KIQLLDLPGII 107 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v~~~~-------~tt~~~~~--G~i~~~g~--~i~~~d~~g~~ 107 (225)
.++|+|++|+|||||+|+|.+.......+. ..|..... ..+..++. .+.++|+||..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 479999999999999999988765433321 12221111 11223444 57889999984
No 300
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.37 E-value=3.1e-06 Score=67.17 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=24.6
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+++ |+.++|+|+||||||||++.+++
T Consensus 17 i~~--G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAP--GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCT--TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcC--CEEEEEECCCCCCHHHHHHHHHH
Confidence 667 99999999999999999999998
No 301
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.35 E-value=8.3e-06 Score=71.68 Aligned_cols=148 Identities=22% Similarity=0.213 Sum_probs=83.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc---cccccccceeeccceEEEEc-----------------C------ceEEEEeC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS---EVAAYEFTTLTTVPGCIKYK-----------------G------AKIQLLDL 103 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~---~v~~~~~tt~~~~~G~i~~~-----------------g------~~i~~~d~ 103 (225)
-.++++|..++|||||++.|+|... +....++.|.+.......+. + ..+.++|+
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 4689999999999999999998643 11223444554332222221 1 56889999
Q ss_pred CCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCcc--ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHHH----
Q psy2924 104 PGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPL--GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDT---- 177 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~~---- 177 (225)
||... +.......+..+|++++++|+.... .+.......++.+++ ++.+.+-++.+-.+...
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~-----~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQ-----KNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-----CCEEEEEECGGGSCHHHHHHH
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCC-----CcEEEEEECccCCCHHHHHHH
Confidence 98532 2233344456789999999987542 111122223343332 34444445555445432
Q ss_pred HHHHHHHhhhc---CCeEEEee---cCChHHHHHHHhc
Q psy2924 178 VKTILSEYRIH---NADITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 178 ~~~i~~~l~~~---~~~vi~~~---~~~~~~~~~~~~~ 209 (225)
.+++.+.+... ...++..| ..+++++++.+..
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 196 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED 196 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 23344444432 22355555 3578888877765
No 302
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.34 E-value=9.4e-09 Score=83.78 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=31.9
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
++++.+ ++++|+||||||||||+++|+|+..| ++|.|.++|.++
T Consensus 22 ~~~~~~---~~~~i~GpnGsGKSTll~~i~g~~~~-----------~~G~i~~~g~~~ 65 (227)
T 1qhl_A 22 TFDLDE---LVTTLSGGNGAGKSTTMAAFVTALIP-----------DLTLLHFRNTTE 65 (227)
T ss_dssp EECHHH---HHHHHHSCCSHHHHHHHHHHHHHHSC-----------CTTTC-------
T ss_pred EEEEcC---cEEEEECCCCCCHHHHHHHHhccccc-----------CCCeEEECCEEc
Confidence 455554 58899999999999999999999988 778888887765
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.32 E-value=2.4e-07 Score=73.99 Aligned_cols=42 Identities=21% Similarity=0.088 Sum_probs=32.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc--ccccccceeeccceE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE--VAAYEFTTLTTVPGC 90 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~--v~~~~~tt~~~~~G~ 90 (225)
|..++|+||||||||||++.|++.+.+ ......||+.+..|.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 889999999999999999999998753 233444566655553
No 304
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.32 E-value=2.9e-06 Score=79.53 Aligned_cols=84 Identities=20% Similarity=0.278 Sum_probs=58.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh---CCCcc---------ccc------cccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA---GVYSE---------VAA------YEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~---g~~~~---------v~~------~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
-..++|+|.+|+|||||+|.|+ |.... +.+ .+++|.....+.+.+++..+.++||||.....
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 4579999999999999999998 43311 122 25667777777888899999999999986421
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
......+..+|.+++++|+...
T Consensus 90 -------~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 90 -------VEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTTB
T ss_pred -------HHHHHHHHHCCEEEEEECCCCC
Confidence 3345566779999999998654
No 305
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.31 E-value=2.7e-07 Score=83.82 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=29.4
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+..+.+ |++++|+|+||||||||+++++|...+
T Consensus 275 ~g~i~~--G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 275 GGGFFK--DSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp TSSEES--SCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 346788 999999999999999999999998765
No 306
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.31 E-value=3.3e-06 Score=78.86 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=59.9
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccc------------cc------cccceeeccceEEEEcCceEEEEe
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEV------------AA------YEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v------------~~------~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
++++.+ +..++|+|++|+|||||++.|++...++ .+ ..+.|.......+.+.+..+.++|
T Consensus 3 s~~~~~--~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAM--IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCC--EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCC--CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 345666 8899999999999999999999544321 11 112233333445566677889999
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+||... +.......+..++..++++|....
T Consensus 81 TpG~~~-------f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 81 APGYGD-------FVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp CCCSGG-------GHHHHHHHHHHCSEEEEEEETTTC
T ss_pred CCCccc-------hHHHHHHHHhhcCcEEEEEcCCcc
Confidence 998643 223455666778998888887543
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.30 E-value=5.1e-07 Score=75.19 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=25.6
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+++ |+.++|+||||||||||++.+++..
T Consensus 27 l~~--G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVA--GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EET--TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccC--CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 677 9999999999999999999999854
No 308
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.30 E-value=1.2e-07 Score=82.21 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.+++.|.+.-+++++|+|+||||||||+++|+|++.+
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4667666544789999999999999999999999987
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.30 E-value=3.2e-07 Score=72.43 Aligned_cols=31 Identities=29% Similarity=0.207 Sum_probs=26.6
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
++.+ |.+++|+|+||||||||+++|++...|
T Consensus 2 ~i~~--g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEK--GLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CC--CCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCC--CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4667 899999999999999999999998744
No 310
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.30 E-value=2.1e-06 Score=74.02 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..++|+|.+|||||||+|+|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4799999999999999999999764
No 311
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.30 E-value=1.7e-07 Score=85.28 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=63.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEE-cCceEEEEeCCCCCCCccCCcchHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTC 127 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (225)
..+++|+|.+|+|||||++.|++........|++|.+.....+.+ ++..+.++||||........ ...+..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~-------~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR-------ARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB-------BSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH-------HHHHccC
Confidence 457999999999999999999987766667888888877777766 56789999999965432211 1123568
Q ss_pred CeEEEEeeCCCc
Q psy2924 128 SLIFIVLDVLKP 139 (225)
Q Consensus 128 ~~~l~~~d~~~~ 139 (225)
|++++++|+...
T Consensus 77 D~vILVVDa~dg 88 (537)
T 3izy_P 77 DIVILVVAADDG 88 (537)
T ss_dssp SSCEEECBSSSC
T ss_pred CEEEEEEECCCC
Confidence 888999888754
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.29 E-value=2.1e-07 Score=73.99 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=25.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
|++++|+|+||||||||+++|+|++.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 889999999999999999999998653
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.28 E-value=1.8e-07 Score=73.15 Aligned_cols=36 Identities=28% Similarity=0.263 Sum_probs=29.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
|++++|+||||||||||+++|++ + ..|.+.+++.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~-----------~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q-----------LDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H-----------SSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c-----------cCCeEEEcccch
Confidence 56899999999999999999986 3 556677766443
No 314
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.28 E-value=9.2e-08 Score=79.92 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=32.7
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+...++++++.+++ | ++|+||||||||||+++|+|...
T Consensus 32 ~~~~l~~~~l~~~~--G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 32 NPDQFKALGLVTPA--G--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp SHHHHHHTTCCCCS--E--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CHHHHHHcCCCCCC--e--EEEECCCCCcHHHHHHHHHHHcC
Confidence 34456778899888 7 99999999999999999999764
No 315
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.27 E-value=9.8e-06 Score=71.81 Aligned_cols=83 Identities=25% Similarity=0.187 Sum_probs=52.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-----------cccccccceee----------------------ccceEEEEcCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-----------EVAAYEFTTLT----------------------TVPGCIKYKGA 96 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-----------~v~~~~~tt~~----------------------~~~G~i~~~g~ 96 (225)
-.++++|..|+|||||++.|++... ..+.+++||++ .....+...+.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 4799999999999999999986431 12234444322 11122334567
Q ss_pred eEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 97 KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 97 ~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
.+.++|+||... +.......+..+|++++++|+...
T Consensus 105 ~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCC
Confidence 889999999643 223344557889999999998764
No 316
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.27 E-value=2.2e-07 Score=82.18 Aligned_cols=39 Identities=23% Similarity=0.048 Sum_probs=34.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
|..++|+||||||||||+++|+|...+ ..|.|.+.+.++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~-----------~~g~I~~~ed~i 205 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNS-----------SERNILTVEDPI 205 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCC-----------TTSCEEEEESSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCC-----------CCCEEEEecccc
Confidence 789999999999999999999999887 778887766554
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.27 E-value=1.3e-07 Score=77.25 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=25.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh---CCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA---GVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~---g~~~~ 75 (225)
+++++|+|+||||||||+++|+ |+..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 6799999999999999999999 98876
No 318
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.26 E-value=3.3e-06 Score=74.10 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=57.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccc-----------------cccccceeeccceEEEEcCceEEEEeCCCCCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEV-----------------AAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v-----------------~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 111 (225)
.-.++++|.+|+|||||++.|++..... ...++.|.+.....+...+..+.++|+||...
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~--- 87 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD--- 87 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG---
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH---
Confidence 3579999999999999999999841100 01234455443333444567899999999753
Q ss_pred CCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 112 DGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..+|++++++|+...
T Consensus 88 ----f~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 88 ----YIKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp ----GHHHHHHHHTTCSSEEEEEETTTC
T ss_pred ----HHHHHHHHHHHCCEEEEEEECCCC
Confidence 234445567789999999998764
No 319
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.24 E-value=3.4e-07 Score=71.04 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=30.6
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++++++.+ | ..+|+|+||||||||+.+|.++..+
T Consensus 18 ~~~~~~~~~--g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSK--G-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCS--S-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCC--C-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 577888888 8 8999999999999999999887643
No 320
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.23 E-value=1.1e-05 Score=64.98 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccce-eeccceEEEEcCce--EEEEeCCCCCCCccCCcchHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT-LTTVPGCIKYKGAK--IQLLDLPGIIEGAKDGKGRGRQVIAVART 126 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt-~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 126 (225)
-+|+|+|.+|||||||++.++.-.. ...|..|. .+-..-.+.+++.. +.++|++|..... .+ ....++.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~l---~~~~~~~ 85 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----SL---IPSYIRD 85 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCG----GG---HHHHHTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----hH---HHHHhcc
Confidence 3699999999999999999875432 12232221 11112234556654 5678999864321 11 2345688
Q ss_pred CCeEEEEeeCCCccccHHHHHHHHHhcccccCCCCCcccccCCCC-----CCCHHHHHHHHHHhhhcCCeEEEee---cC
Q psy2924 127 CSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQS-----ELDLDTVKTILSEYRIHNADITLRY---DA 198 (225)
Q Consensus 127 ~~~~l~~~d~~~~~~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~-----~LD~~~~~~i~~~l~~~~~~vi~~~---~~ 198 (225)
+++++.++|...... .+.+...+..+.-.....++.+.+-++.+ .+.....+.+.+ +++...+-+| +.
T Consensus 86 a~~~ilv~di~~~~S-f~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~---~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 86 SAAAVVVYDITNVNS-FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK---ELNVMFIETSAKAGY 161 (216)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH---HHTCEEEEEBTTTTB
T ss_pred ccEEEEEeecchhHH-HHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH---HhCCeeEEEeCCCCc
Confidence 999999998876421 11222222222111122344444222222 234444333333 3344433233 46
Q ss_pred ChHHHHHHHhccc
Q psy2924 199 TSDDLIDVVEGNR 211 (225)
Q Consensus 199 ~~~~~~~~~~~~~ 211 (225)
+++++++.+...+
T Consensus 162 nV~e~F~~i~~~i 174 (216)
T 4dkx_A 162 NVKQLFRRVAAAL 174 (216)
T ss_dssp SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 8888876664433
No 321
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=5.8e-07 Score=71.06 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=24.1
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
-+.+++||++.+ +..++|+|++||||||+.+.|+..+
T Consensus 13 ~~~~~~~~~~~~--~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNA--MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------C--CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCC--CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 367899999999 9999999999999999999998654
No 322
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.21 E-value=7.5e-06 Score=74.47 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=55.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc----------------ccc------cccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE----------------VAA------YEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~----------------v~~------~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
...++|+|.+|+|||||++.|++.... +.+ ..+.|.......+.+.+..+.++|+||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 457999999999999999999863211 111 2233443344456678889999999997
Q ss_pred CCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
.... ......+..+|.+++++|+...
T Consensus 93 ~df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 93 EDFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TTCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hhHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 5422 2334456788988888887653
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.20 E-value=4.2e-07 Score=77.46 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=32.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceE
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
++++|+|+||||||||+|.|+|.... +...-..+..|.+.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~---~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG---YKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC---CCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC---CcEEEEEecCcccCccHHHH
Confidence 57999999999999999999998610 00000112778888887655
No 324
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.18 E-value=4.7e-06 Score=71.96 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
..+++|+|++|||||||++.|+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 325
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.18 E-value=1.1e-05 Score=68.16 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
|.+++++|+|||||||+++.|++...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999998875
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.17 E-value=2.8e-07 Score=75.91 Aligned_cols=27 Identities=30% Similarity=0.190 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh---CCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA---GVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~---g~~~~ 75 (225)
|.+++|+|||||||||++++|+ |+..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 8899999999999999999999 88766
No 327
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.15 E-value=1.7e-07 Score=76.89 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
...+++++.+++ | ++|+||||+|||||+++|++..
T Consensus 39 ~~~~~~~~~~~~--g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 39 SRFHEMGARIPK--G--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHTTCCCCS--E--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCC--e--EEEECCCCCCHHHHHHHHHHHh
Confidence 446678888888 7 9999999999999999999875
No 328
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.14 E-value=2.3e-05 Score=68.85 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=76.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc---ccccccceeeccceEEEE---------------c--C------ceEEEEe
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE---VAAYEFTTLTTVPGCIKY---------------K--G------AKIQLLD 102 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~---v~~~~~tt~~~~~G~i~~---------------~--g------~~i~~~d 102 (225)
.-.++++|..++|||||++.|+|.... ....++.|.+.......+ . | ..+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 457999999999999999999986421 111244454332222211 1 1 5688999
Q ss_pred CCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCcc---ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCH----
Q psy2924 103 LPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPL---GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDL---- 175 (225)
Q Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~---- 175 (225)
+||... +.......+..+|++++++|+.... +..+.+ ..++.+++ ++.+.+-++.+-.+.
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l~~-----~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEILGI-----DKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHTTC-----CCEEEEEECTTSSCTTTTT
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHcCC-----CeEEEEEEccCCCCHHHHH
Confidence 998532 1222223345579999999987542 112222 23344332 233332233322221
Q ss_pred HHHHHHHHHhhhc---CCeEEEee---cCChHHHHHHHhc
Q psy2924 176 DTVKTILSEYRIH---NADITLRY---DATSDDLIDVVEG 209 (225)
Q Consensus 176 ~~~~~i~~~l~~~---~~~vi~~~---~~~~~~~~~~~~~ 209 (225)
...+++.+.+... ...++..| ..+++++++.+..
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 194 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD 194 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 2334455555442 22344433 4678888877765
No 329
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.14 E-value=1.3e-05 Score=75.13 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=56.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh---CCCcc---------ccc------cccceeeccceEEEEcCceEEEEeCCCCCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA---GVYSE---------VAA------YEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~---g~~~~---------v~~------~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~ 110 (225)
-..++|+|.+|+|||||++.|+ |.... +.+ ..+.|.......+.+.+..+.++|+||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD-- 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT--
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc--
Confidence 4579999999999999999998 33211 111 334565555667778889999999999753
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..+|.+++++|+...
T Consensus 90 -----f~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 90 -----FTIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp -----CHHHHHHHHHHCSEEEEEEETTTC
T ss_pred -----hHHHHHHHHHHCCEEEEEEECCCC
Confidence 223445566789999999998654
No 330
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.13 E-value=1.2e-06 Score=74.27 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.+++...+ +.+++|+|+|||||||++..|++.+.+
T Consensus 96 ~~~~~~~~--~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 96 KLNVPPEP--PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CCCCCSSS--CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcccCCC--CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 45666667 899999999999999999999998876
No 331
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.13 E-value=1.1e-05 Score=71.48 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=53.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC---Ccc--c--------------------------cccccceeeccceEEEEcCceE
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGV---YSE--V--------------------------AAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~---~~~--v--------------------------~~~~~tt~~~~~G~i~~~g~~i 98 (225)
-.++++|..|+|||||++.|++. ... + ...+++|.+.....+...+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 47999999999999999999753 110 0 0124566666555666677889
Q ss_pred EEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 99 QLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 99 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
.++|+||... +.......+..+|++++++|+...
T Consensus 87 ~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 87 TIIDAPGHRD-------FVKNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCCC
Confidence 9999999754 223344556789999999998753
No 332
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.12 E-value=9.1e-06 Score=72.58 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=58.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC---cc----------------------ccc------cccceeeccceEEEEcCceE
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY---SE----------------------VAA------YEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~---~~----------------------v~~------~~~tt~~~~~G~i~~~g~~i 98 (225)
-.++++|.+|+|||||++.|++.. .. +.+ .++.|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 469999999999999999998531 10 001 14556665555556667889
Q ss_pred EEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 99 QLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 99 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
.++|+||... +.......+..+|++++++|+...
T Consensus 88 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcC
Confidence 9999999642 333444556789999999998753
No 333
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.12 E-value=3.4e-06 Score=74.13 Aligned_cols=30 Identities=27% Similarity=0.185 Sum_probs=24.9
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHH--hCCCcc
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTL--AGVYSE 75 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l--~g~~~~ 75 (225)
+++ |++++|+||||||||||++.+ .+..++
T Consensus 175 I~~--Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 175 VET--GSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp EET--TSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred cCC--CcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 567 999999999999999999954 455544
No 334
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.11 E-value=2.1e-07 Score=77.46 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=31.5
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+....+++++.+++ | ++|+||||+|||||+++|++..
T Consensus 61 ~~~~l~~~~~~~~~--g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 61 NPSRFHEMGARIPK--G--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CHHHHHHTTCCCCC--E--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CHHHHHHcCCCCCC--e--EEEECCCcChHHHHHHHHHHHc
Confidence 33446678888888 7 9999999999999999999876
No 335
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.11 E-value=5.3e-07 Score=83.12 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=36.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCcc-------------------------------ccccccceeeccceEEEEcCceE
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSE-------------------------------VAAYEFTTLTTVPGCIKYKGAKI 98 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~-------------------------------v~~~~~tt~~~~~G~i~~~g~~i 98 (225)
..++|+|.+|+|||||++.|++.... ....+++|++.....+.+.+..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 36999999999999999999642110 11145778887777777788889
Q ss_pred EEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCC
Q psy2924 99 QLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK 138 (225)
Q Consensus 99 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 138 (225)
.++|+||......... ..+..+|++++++|+..
T Consensus 258 ~iiDTPGh~~f~~~~~-------~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 258 EIGDAPGHRDFISGMI-------AGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -CCEEESSSEEEEECC-------C-------CCSEEEEEE
T ss_pred EEEECCChHHHHHHHH-------HHHhhCCEEEEEEECCC
Confidence 9999999765332211 12345777777777653
No 336
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.10 E-value=2.7e-07 Score=73.04 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=27.1
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..++ |+.++|+|+||||||||+++|++.+.
T Consensus 20 ~~~~~--g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 20 LLDQK--GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHTSC--CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44456 89999999999999999999999764
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.09 E-value=8.5e-07 Score=75.73 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.+++|.+.+ +.+++|+|+||+||||++..|++...+
T Consensus 96 ~~l~~~~~~--~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 96 YRIDFKENR--LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCCCTTS--CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred cCccccCCC--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 578888888 999999999999999999999998876
No 338
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=2.5e-06 Score=75.88 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=44.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC---------------CccccccccceeeccceEEEEc---------C--ceEEEEeC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGV---------------YSEVAAYEFTTLTTVPGCIKYK---------G--AKIQLLDL 103 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~---------------~~~v~~~~~tt~~~~~G~i~~~---------g--~~i~~~d~ 103 (225)
.+|+|+|++++|||||||.|.|. ....-.+..||+..+.|...+. | ..+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 36999999999999999999975 1122334447888888976653 2 45788999
Q ss_pred CCCCCC
Q psy2924 104 PGIIEG 109 (225)
Q Consensus 104 ~g~~~~ 109 (225)
+|+...
T Consensus 148 eG~~~~ 153 (447)
T 3q5d_A 148 QGTFDS 153 (447)
T ss_dssp ECCCSS
T ss_pred Cccccc
Confidence 998754
No 339
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.08 E-value=3.4e-06 Score=76.17 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=60.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 128 (225)
...++|+|.+|+|||||++.|.+........+++|.+.....+.+++..+.++|+||........ ...+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~-------~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR-------ARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB-------CSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH-------HHHHhhCC
Confidence 45899999999999999999987544445556777665555566678889999999975432211 11246688
Q ss_pred eEEEEeeCCCc
Q psy2924 129 LIFIVLDVLKP 139 (225)
Q Consensus 129 ~~l~~~d~~~~ 139 (225)
++++++|+...
T Consensus 77 ~aILVVda~~g 87 (501)
T 1zo1_I 77 IVVLVVAADDG 87 (501)
T ss_dssp SEEEEEETTTB
T ss_pred EEEEEeecccC
Confidence 88899887654
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.07 E-value=1e-06 Score=69.88 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=25.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+.+++|+|+||||||||++.|.+...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999999998765
No 341
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.05 E-value=2.1e-05 Score=70.42 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=49.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC---CCcc----------------------cc------ccccceeeccceEEEEcCce
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG---VYSE----------------------VA------AYEFTTLTTVPGCIKYKGAK 97 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g---~~~~----------------------v~------~~~~tt~~~~~G~i~~~g~~ 97 (225)
.-.++++|..++|||||++.|+. .... +. ...+.|.+.....+.+++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 34799999999999999999963 2110 00 12345555555556677888
Q ss_pred EEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 98 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.++|+||..... ......+..+|++++++|+...
T Consensus 123 ~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 123 FSLLDAPGHKGYV-------TNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EEECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred EEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcC
Confidence 9999999975422 2233445789999999998764
No 342
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.04 E-value=1.8e-06 Score=68.20 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.8
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..+ |++++|+|+||||||||+++|++..
T Consensus 26 ~~~--g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEP--TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --C--CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCC--CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345 8899999999999999999998754
No 343
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.03 E-value=1.6e-05 Score=69.66 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=54.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCcc--------cc--------ccccceeeccceEEEEcCceEEEEeCCCCCCCccCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSE--------VA--------AYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~--------v~--------~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 113 (225)
-.++++|.+|+|||||++.|++.... .+ ...+.|.+...-.+...+..+.++|+||...
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 46999999999999999999974210 00 1223344432222333467899999998643
Q ss_pred cchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 114 KGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..+|++++++|+...
T Consensus 79 --f~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 79 --YVKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp --HHHHHHHTSSCCSEEEEEEETTTC
T ss_pred --HHHHHHhhHhhCCEEEEEEECCCC
Confidence 223334456779999999998764
No 344
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.99 E-value=2e-06 Score=67.81 Aligned_cols=49 Identities=31% Similarity=0.312 Sum_probs=38.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCc--cccccccceeeccceEEEEcCceEEEEe
Q psy2924 52 IGFVGFPSVGKSTLLSTLAGVYS--EVAAYEFTTLTTVPGCIKYKGAKIQLLD 102 (225)
Q Consensus 52 v~IiG~nGaGKSTLln~l~g~~~--~v~~~~~tt~~~~~G~i~~~g~~i~~~d 102 (225)
++|+||+|||||||++.|....+ .....+-|||.|-.|.+ +|.++.+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeec
Confidence 78999999999999999976543 22356778999888876 787777654
No 345
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.97 E-value=2e-06 Score=74.51 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.8
Q ss_pred CCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 33 GGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 33 ~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+-+...++++++.+ | +++|+||||+|||||+++|.+
T Consensus 13 ~~~~~~~~~~~~~~--g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 13 NYRNLAPGTLNFPE--G-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SBTTCCSEEEECCS--E-EEEEECCTTSSHHHHHHHHHH
T ss_pred CccceeeeEEEEcC--C-eEEEECCCCCChhHHHHHHHH
Confidence 34457788999988 8 999999999999999999986
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.95 E-value=3.3e-06 Score=68.34 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=26.3
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+....+ |.+++|.|++|||||||+++|++.
T Consensus 14 ~~~~~~--g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQ--PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCC--CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCC--ceEEEEECCCCCCHHHHHHHHHhc
Confidence 334566 999999999999999999999986
No 347
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.92 E-value=6.9e-05 Score=69.04 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=47.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc---------cc------cccceeeccceEEEEc---C--ceEEEEeCCCCCCCc
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEV---------AA------YEFTTLTTVPGCIKYK---G--AKIQLLDLPGIIEGA 110 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v---------~~------~~~tt~~~~~G~i~~~---g--~~i~~~d~~g~~~~~ 110 (225)
.++|+|..|+|||||++.|+.....+ .+ -.+.|.....-.+.|. | ..+.++||||...
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d-- 83 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD-- 83 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG--
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH--
Confidence 69999999999999999997532110 01 1233433333345454 2 4678999999754
Q ss_pred cCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..+|.+++++|+...
T Consensus 84 -----F~~ev~~~l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 84 -----FSYEVSRSLAACEGALLVVDAGQG 107 (599)
T ss_dssp -----GHHHHHHHHHHCSEEEEEEETTTC
T ss_pred -----HHHHHHHHHHHCCEEEEEEECCCC
Confidence 223445567789999999998764
No 348
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.92 E-value=3.5e-06 Score=64.57 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=23.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..++|+|+||||||||++.|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998754
No 349
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.92 E-value=3.6e-06 Score=66.67 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=30.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc--ccccccceeeccceEE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE--VAAYEFTTLTTVPGCI 91 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~--v~~~~~tt~~~~~G~i 91 (225)
|..++|+||||||||||.+.|...... ....+-|||.+..|.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 789999999999999999999875521 1123445666655443
No 350
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.89 E-value=1.1e-05 Score=64.99 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=25.1
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+++ |+.++|+||||||||||++.|++.
T Consensus 21 i~~--G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IET--GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EET--TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcC--CeEEEEECCCCCcHHHHHHHHHHH
Confidence 667 999999999999999999999993
No 351
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.85 E-value=4.7e-05 Score=71.82 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc-ccc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVA 77 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~-~v~ 77 (225)
..|+++|..++|||||+|+|+|... |.+
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g 80 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRG 80 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcC
Confidence 3699999999999999999999765 443
No 352
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.85 E-value=5.6e-05 Score=61.97 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.7
Q ss_pred CeeEEEEcCC---------CCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFP---------SVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~n---------GaGKSTLln~l~g~ 72 (225)
.-.++|+|.+ |||||||+|.+++-
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 3579999999 99999999999983
No 353
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.84 E-value=0.00013 Score=67.19 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=50.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC---Ccc------ccc------cccceeeccceEEEEc---C--ceEEEEeCCCCCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGV---YSE------VAA------YEFTTLTTVPGCIKYK---G--AKIQLLDLPGIIEG 109 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~---~~~------v~~------~~~tt~~~~~G~i~~~---g--~~i~~~d~~g~~~~ 109 (225)
..++|+|..|+|||||++.|+.. ... +.+ -.+.|.......+.|. | ..+.++||||...
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d- 85 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD- 85 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG-
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh-
Confidence 36999999999999999999642 110 001 1233443334445554 3 4677999999754
Q ss_pred ccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..+|.+++++|+...
T Consensus 86 ------F~~ev~r~l~~aD~aILVVDa~~g 109 (600)
T 2ywe_A 86 ------FSYEVSRALAACEGALLLIDASQG 109 (600)
T ss_dssp ------GHHHHHHHHHTCSEEEEEEETTTB
T ss_pred ------HHHHHHHHHHhCCEEEEEEECCCC
Confidence 223445567889999999998765
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.84 E-value=7.6e-06 Score=62.90 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
|.+++|+|+|||||||+++.|++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 789999999999999999999874
No 355
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.83 E-value=0.00012 Score=68.81 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=56.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh---CCCcc---------ccc------cccceeeccceEEEEcC-------ceEEEEeC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA---GVYSE---------VAA------YEFTTLTTVPGCIKYKG-------AKIQLLDL 103 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~---g~~~~---------v~~------~~~tt~~~~~G~i~~~g-------~~i~~~d~ 103 (225)
-..++|+|..|+|||||++.|+ |.... +.+ ..+.|.......+.+.+ ..+.++|+
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 4579999999999999999995 32221 111 12334444444566666 78899999
Q ss_pred CCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 104 PGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
||.... .......+..+|.+++++|+...
T Consensus 90 PG~~df-------~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 90 PGHVDF-------TIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred CCccch-------HHHHHHHHHHCCEEEEEEeCCCC
Confidence 997532 23344566778888888887653
No 356
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.82 E-value=1.3e-06 Score=71.99 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=33.0
Q ss_pred HHHHHHh-hhcc-CCCCCCCCCCceeecc-CCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 21 IAKLRRE-LITP-KGGGGGPGEGFDVAKT-GDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 21 ~~~~~~~-~~~~-~~~~~~~~is~~i~~~-~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+.+++.. ...+ ......+++||++.+. .|+.++|+|++||||||+.+.|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4455554 4455 4455677889988752 25799999999999999999998743
No 357
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=4.1e-06 Score=73.06 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=29.1
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
++++.+++ |..++|+||||+|||||+++|++..
T Consensus 161 ~~~~~i~~--~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 161 CMVYNIPK--KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHCCTT--CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcccccCC--CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44678888 9999999999999999999999853
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.81 E-value=9.5e-06 Score=61.43 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g 71 (225)
..+..+++.+ | ..+|+||||+||||++.+|.-
T Consensus 14 ~~~~~i~f~~--g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKE--G-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCS--E-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCC--C-eEEEECCCCCCHHHHHHHHHH
Confidence 3444555555 4 889999999999999999873
No 359
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.81 E-value=7.1e-05 Score=71.64 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=56.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCcc-ccc---------------cccceeeccceEEEEc----------------Cce
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYSE-VAA---------------YEFTTLTTVPGCIKYK----------------GAK 97 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~~-v~~---------------~~~tt~~~~~G~i~~~----------------g~~ 97 (225)
..++|+|.+|+|||||++.|++.... ... .++.|.......+.|. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 36999999999999999999864211 111 1233443344455554 567
Q ss_pred EEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 98 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.++||||..... ......++.+|.+++++|+...
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 8899999976522 3445667889999999998765
No 360
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.80 E-value=4.3e-06 Score=76.36 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=34.9
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccce-EEE-EcCceE
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG-CIK-YKGAKI 98 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G-~i~-~~g~~i 98 (225)
.+.+ |+.++|+|+||||||||+++|++.+.+ ..| .+. +++.++
T Consensus 365 ~~~~--G~iI~LiG~sGSGKSTLar~La~~L~~-----------~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQ--GFTVFFTGLSGAGKSTLARALAARLME-----------MGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGS--CEEEEEEESSCHHHHHHHHHHHHHHHT-----------TCSSCEEEESSHHH
T ss_pred cccc--ceEEEEECCCCChHHHHHHHHHHhhcc-----------cCCceEEEECCcHH
Confidence 3556 899999999999999999999999877 665 563 666543
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.80 E-value=1.2e-05 Score=63.54 Aligned_cols=32 Identities=28% Similarity=0.224 Sum_probs=27.5
Q ss_pred CCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 40 EGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 40 is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+--.+.+ +.+++|+|++|||||||.+.|.+.+
T Consensus 14 ~~~~~~~--~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSK--TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCC--CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCC--CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3345666 8899999999999999999999976
No 362
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.76 E-value=0.00028 Score=62.48 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=24.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+.+++++|++||||||++..|+..+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999987765
No 363
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.75 E-value=1e-05 Score=72.97 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=32.6
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
++...+.++++.+++ | +.|+||||+|||||+++|++..
T Consensus 51 ~~~~~~~~lg~~ip~--G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 51 KNPSRFHEMGARIPK--G--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HCGGGTTTTSCCCCS--E--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hchhhhhhccCCCCc--e--EEEECCCCCCHHHHHHHHHHHh
Confidence 344557788999988 7 9999999999999999999865
No 364
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.73 E-value=8.9e-07 Score=75.77 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+.++|+||||+|||||+++|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999999976
No 365
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.73 E-value=0.0004 Score=59.30 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=67.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCccc-cccccceeeccceEEEEcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCe
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSEV-AAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSL 129 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~v-~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (225)
++.++|.+|||||||++.+.+-..+. .....+|.......+. ....++++|++|.-..... .+ .....++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch--hh--hhhhhccCCCE
Confidence 47899999999999999887654331 1112233333322321 1256889999986543211 01 22345789999
Q ss_pred EEEEeeCCCcc-ccHHHHHHHHHhcccccCCCCCcccccCCCCCCCHH
Q psy2924 130 IFIVLDVLKPL-GHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLD 176 (225)
Q Consensus 130 ~l~~~d~~~~~-~~~~~~~~~l~~~~l~~~~~~~~lslDEp~~~LD~~ 176 (225)
+++++|..... ...++..++++.+.- .....+.+.+-++.+..+..
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYK-VNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCSSCSH
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcccCchh
Confidence 99999987641 122333333433211 11234555666777766543
No 366
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.72 E-value=9.9e-06 Score=69.12 Aligned_cols=26 Identities=38% Similarity=0.410 Sum_probs=23.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
.-++||+|+||||||||+++|.++..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34899999999999999999999875
No 367
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.69 E-value=1.4e-05 Score=70.68 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.7
Q ss_pred ceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 42 ~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++.. +++++|+||||||||||+++|+++..+
T Consensus 21 ~~~~~--~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGE--SNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTT--CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecC--CCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 55556 789999999999999999999987754
No 368
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.66 E-value=2.5e-05 Score=60.73 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
++|+...+ +..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~--~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPK--GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCS--SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCC--CCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888 889999999999999999999865
No 369
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.62 E-value=2.5e-05 Score=62.38 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..++|+|++||||||+.+.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 370
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.60 E-value=3.2e-05 Score=60.98 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+++|+|+|||||||+.+.|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 371
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.59 E-value=0.0005 Score=62.04 Aligned_cols=90 Identities=27% Similarity=0.233 Sum_probs=50.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh------CCCcccccc--------------------c----cceeeccc----e--EEE
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA------GVYSEVAAY--------------------E----FTTLTTVP----G--CIK 92 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~------g~~~~v~~~--------------------~----~tt~~~~~----G--~i~ 92 (225)
...|+|+|++||||||+++.|+ |....+.+. | .++.+|.. + .+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999 654321111 0 01111100 0 011
Q ss_pred EcCceEEEEeCCCCCCCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 93 YKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 93 ~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.+.++.++||||.......-......... +..++.+++++|+...
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AIQPDNIVYVMDASIG 226 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HHCCSEEEEEEETTCC
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHh-hhcCceEEEEEecccc
Confidence 256789999999976421110001111112 2267888889998654
No 372
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.56 E-value=3.5e-05 Score=61.25 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+.+..+++.+ | ..+|+||||+||||++.+|.-
T Consensus 14 ~~~~~i~f~~--~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKE--G-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCS--E-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCC--C-eEEEEcCCCCCHHHHHHHHHH
Confidence 3344555555 4 899999999999999999863
No 373
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.56 E-value=0.0002 Score=70.34 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=52.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc----------------ccccccceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE----------------VAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~----------------v~~~~~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
.-.++++|.+|+|||||++.|++.... .....+.|.+...-.+...+..+.++|+||...
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed---- 371 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD---- 371 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH----
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH----
Confidence 346999999999999999999874210 001233344332222333457899999999643
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
+.......+..+|++++++|+...
T Consensus 372 ---F~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 372 ---YVKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp ---HHHHHHHTSCCCSEEEEEEETTTC
T ss_pred ---HHHHHHHHHhhCCEEEEEEcCCcc
Confidence 223334456779999999998764
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.56 E-value=4.2e-05 Score=61.94 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=25.8
Q ss_pred CCCCCceee---ccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 37 GPGEGFDVA---KTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 37 ~~~is~~i~---~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..+.++.+. . |.+++|.|++||||||+++.|...+.
T Consensus 13 ~~~~~~~~~~~~~--g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAM--SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCC--CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCC--CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 344555554 6 89999999999999999999998654
No 375
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.53 E-value=3.5e-05 Score=60.63 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 376
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.53 E-value=2.2e-05 Score=62.46 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=26.5
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+.+ |..++|+|++||||||+.+.|.+.+.+
T Consensus 22 ~~~--~~~i~~~G~~GsGKsT~~~~l~~~l~~ 51 (211)
T 1m7g_A 22 NQR--GLTIWLTGLSASGKSTLAVELEHQLVR 51 (211)
T ss_dssp TSS--CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCC--CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445 889999999999999999999988765
No 377
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.50 E-value=5.7e-05 Score=66.78 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.+++|+ + +.+++++|++||||||++..|++.+.+
T Consensus 91 ~~i~l~--~--~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 91 RLPVLK--D--RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCCC--S--SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccccCC--C--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567887 6 789999999999999999999998865
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.47 E-value=5.5e-05 Score=58.30 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|.+++|+|++||||||+.+.|.+.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999998653
No 379
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.46 E-value=0.00089 Score=61.03 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=64.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHh---CCCcc-------------ccc------cccceeeccceEEEEcCceEEEEeCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLA---GVYSE-------------VAA------YEFTTLTTVPGCIKYKGAKIQLLDLPGI 106 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~---g~~~~-------------v~~------~~~tt~~~~~G~i~~~g~~i~~~d~~g~ 106 (225)
-..+||+|..++|||||.-+|+ |.... +.+ -.+-|.....-.+.|++..+.++||||.
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 3469999999999999999884 22111 111 1223333344567789999999999997
Q ss_pred CCCccCCcchHHHHHHHHhCCCeEEEEeeCCCccc-cHHHHHHHHHhccc
Q psy2924 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLG-HKKLIEHELEGFGL 155 (225)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~l~~~~l 155 (225)
.+.. .+....++-+|..+.++|+...-+ +-+.+...+.+.++
T Consensus 111 vDF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~l 153 (548)
T 3vqt_A 111 QDFS-------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRAT 153 (548)
T ss_dssp GGCS-------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTC
T ss_pred HHHH-------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCC
Confidence 6532 455667788899889988876522 23445555555544
No 380
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.46 E-value=0.00022 Score=65.62 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=49.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccc-cceeeccceEEEE--------------------cCceEEEEeCCCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE-FTTLTTVPGCIKY--------------------KGAKIQLLDLPGII 107 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~-~tt~~~~~G~i~~--------------------~g~~i~~~d~~g~~ 107 (225)
...++|+|.+|+|||||++.|.+.... ...| +.|.+ .|...+ ....+.++||||..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~--ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQH--IGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCB--TTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecc--cCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 357999999999999999999875321 1111 22221 122111 11258899999975
Q ss_pred CCccCCcchHHHHHHHHhCCCeEEEEeeCCCc
Q psy2924 108 EGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP 139 (225)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 139 (225)
....... ..+..+|++++++|+...
T Consensus 82 ~F~~~~~-------r~~~~aD~aILVvDa~~G 106 (594)
T 1g7s_A 82 AFTTLRK-------RGGALADLAILIVDINEG 106 (594)
T ss_dssp CCTTSBC-------SSSBSCSEEEEEEETTTC
T ss_pred HHHHHHH-------HHHhhCCEEEEEEECCCC
Confidence 4322111 123568999999998764
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.45 E-value=4.1e-05 Score=67.90 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
...++|+|++||||||+++.|++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999853
No 382
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.44 E-value=0.00064 Score=60.32 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+.+++++|++||||||++..|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 67999999999999999999983
No 383
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.41 E-value=4.3e-05 Score=65.44 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=34.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecCChHHHHHHHhccc
Q psy2924 159 KEPPNIDNQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDATSDDLIDVVEGNR 211 (225)
Q Consensus 159 ~~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~~~~~~~~~~~~~~ 211 (225)
..++.+.+||||++||+..+..+++.+..+. .+ ++++|+. ++...++..+
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~---~~~~~~d~~~ 324 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE---ELKDAADHVI 324 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG---GGGGGCSEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH---HHHHhCCEEE
Confidence 4567788999999999999999888887653 24 4455553 3444444433
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.40 E-value=4.8e-05 Score=63.90 Aligned_cols=27 Identities=26% Similarity=0.095 Sum_probs=25.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+.+++|+|++|||||||.+.|.+.+.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 789999999999999999999998864
No 385
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.39 E-value=7.8e-05 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..++|+|++|||||||++.|.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4799999999999999999998754
No 386
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.39 E-value=5.6e-05 Score=68.88 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCccccccccceeeccceEEEEcC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG 95 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~v~~~~~tt~~~~~G~i~~~g 95 (225)
|..++|+||||+|||||+++|++...+ ..|.+.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~-----------~~~~i~~~~ 143 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR-----------KFVRISLGG 143 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC-----------EEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC-----------CeEEEEecc
Confidence 789999999999999999999998765 556665555
No 387
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.37 E-value=6.9e-05 Score=58.13 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=24.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
|..++|+|++||||||+.+.|+.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999987653
No 388
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=5.4e-05 Score=61.78 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 37 GPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 37 ~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..+++.++. | +.|+||||+|||||+++|++...
T Consensus 37 ~~~~~~~~~~--~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPK--G--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCC--E--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCC--e--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3444555555 4 89999999999999999998653
No 389
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.31 E-value=0.0001 Score=62.11 Aligned_cols=35 Identities=29% Similarity=0.191 Sum_probs=29.2
Q ss_pred CC-CCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PG-EGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~-is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.+ ++++. + +.+++++|++|+||||++..|++...+
T Consensus 89 ~~~i~~~~-~--~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDK-I--PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSS-S--SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCC-C--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 77764 3 679999999999999999999988765
No 390
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.31 E-value=8.9e-05 Score=58.24 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998653
No 391
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.31 E-value=0.00012 Score=56.42 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
|..++|+|++||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999984
No 392
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.30 E-value=8.5e-05 Score=68.46 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 38 ~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+.+++.+.. |..+.|+||||+|||||+++|++...+
T Consensus 51 ~~l~~~i~~--g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 51 EVIKTAANQ--KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhccccccC--CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 345666777 889999999999999999999998875
No 393
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.29 E-value=0.00013 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.096 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.++|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 394
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.22 E-value=0.00017 Score=54.45 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHH
Q psy2924 51 RIGFVGFPSVGKSTLLSTL 69 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l 69 (225)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 395
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.00019 Score=57.57 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=23.4
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
-+++ |+.++|+|+||+|||||+..++..
T Consensus 19 Gl~~--G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 19 GIPE--RNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp SEET--TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCC--CcEEEEECCCCCCHHHHHHHHHHH
Confidence 4677 999999999999999997666543
No 396
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.17 E-value=0.00023 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..+.|+|++||||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 397
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.15 E-value=0.00024 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+.+++|.|++||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999763
No 398
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.12 E-value=0.0001 Score=66.10 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.+.++++.+++ | +.|+||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~--g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPK--G--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCS--E--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCC--e--EEEECCCCCCHHHHHHHHHHHc
Confidence 34556677777 6 8899999999999999999854
No 399
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.11 E-value=0.0009 Score=62.09 Aligned_cols=98 Identities=19% Similarity=0.364 Sum_probs=66.0
Q ss_pred eEEEEcCCCCCHHHHHHHH---hCCCccccc---------cc------cceeeccceEEEEcCceEEEEeCCCCCCCccC
Q psy2924 51 RIGFVGFPSVGKSTLLSTL---AGVYSEVAA---------YE------FTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l---~g~~~~v~~---------~~------~tt~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 112 (225)
.+||+|..++|||||.-.| +|.....+. +- +-|.....-.+.|.+..+.++||||..+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D---- 79 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD---- 79 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS----
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH----
Confidence 4899999999999999888 454432111 11 2233333345667888999999999765
Q ss_pred CcchHHHHHHHHhCCCeEEEEeeCCCcc-ccHHHHHHHHHhccc
Q psy2924 113 GKGRGRQVIAVARTCSLIFIVLDVLKPL-GHKKLIEHELEGFGL 155 (225)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~l 155 (225)
+..+....++-+|..+.++|+...- .+.+.+...+...++
T Consensus 80 ---F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~l 120 (638)
T 3j25_A 80 ---FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI 120 (638)
T ss_dssp ---THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCC
Confidence 3456667788899999998987652 233455555655554
No 400
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.11 E-value=0.00027 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g 71 (225)
..+.|+|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 401
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.09 E-value=0.00027 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.|+|+|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 402
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.00019 Score=61.99 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=26.0
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
+++ |..+.|.||||+|||||+..++....+
T Consensus 58 i~~--G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 58 YPR--GRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EET--TEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccC--CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445 889999999999999999999987654
No 403
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.09 E-value=8.1e-05 Score=67.32 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 32 KGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 32 ~~~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
++=+..+++++++.+ | +.+|+|+||||||||+.+|..+
T Consensus 46 ~nf~~~~~~~l~f~~--g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 46 RNLATITQLELELGG--G-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp ESBTTBSCEEEECCC--S-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccccceeeEEEecCC--C-eEEEEcCCCCCHHHHHHHHHHH
Confidence 333446678888888 8 9999999999999999999554
No 404
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.09 E-value=0.00029 Score=54.46 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+..+.|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
No 405
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.04 E-value=0.00017 Score=62.92 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCCceeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 39 ~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
|+.+.+.+ |++++|+|++|+|||||++.|++..
T Consensus 166 D~~~pi~r--GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGR--GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBT--TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecC--CcEEEEecCCCCChhHHHHHHHHHH
Confidence 46677778 9999999999999999999998764
No 406
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00033 Score=53.66 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 407
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.02 E-value=0.0003 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+.+++|+|++||||||+.+.|++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999986
No 408
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.01 E-value=0.00041 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
|..|+|+|++||||||+.+.|...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998765
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00042 Score=54.27 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
|..|+|.|++||||||+.+.|...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998644
No 410
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00036 Score=53.60 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+..+.|+|++||||||+.+.|+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999983
No 411
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.00041 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..+.|+|++||||||+.+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 412
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.98 E-value=0.00038 Score=53.60 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.|+|.|++||||||+.+.|...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.0005 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+.+|+|+|++||||||+.+.|..+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHc
Confidence 568999999999999999999873
No 414
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.00047 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+.+++|+|++||||||+.+.|+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
No 415
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.94 E-value=0.00051 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+.+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 416
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00036 Score=55.22 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
-..++|+|++|||||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 417
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.90 E-value=0.00052 Score=56.22 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.++|+||||||||||.+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 418
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00051 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
|..|+|.|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999999864
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.88 E-value=0.00038 Score=56.88 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..+.|+|+|||||||+.+.|....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 7789999999999999999998754
No 420
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.86 E-value=0.00058 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+.+|+|+|++||||||+.+.|+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999999754
No 421
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.86 E-value=0.00057 Score=54.00 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g 71 (225)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999954
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.00059 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+|+|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 423
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.85 E-value=0.00068 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
...|+|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999865
No 424
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.85 E-value=0.00062 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=22.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
|..|+|+|++||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999854
No 425
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.84 E-value=0.00023 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+|+|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 426
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.84 E-value=0.00032 Score=60.65 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHhhhcCC--e-EEEeec
Q psy2924 161 PPNIDNQVPQSELDLDTVKTILSEYRIHNA--D-ITLRYD 197 (225)
Q Consensus 161 ~~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~-vi~~~~ 197 (225)
++.+.+|||+++||+.....+.+.+..+.. . ++++|+
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~ 345 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH 345 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESC
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEECh
Confidence 566779999999999999999999887642 4 444444
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.83 E-value=0.00061 Score=56.93 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..+.|+|+|||||||+.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
No 428
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.82 E-value=0.00064 Score=53.77 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g 71 (225)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 429
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.81 E-value=0.00066 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
...++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 430
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.78 E-value=0.00082 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..|+|+|++||||||+.+.|+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 431
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00071 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.+|+|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 432
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.77 E-value=0.00035 Score=60.21 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.6
Q ss_pred Cee--EEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DAR--IGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~--v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|+. ++|+|++||||||+.++|++...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 545 99999999999999999998654
No 433
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.75 E-value=0.00059 Score=65.01 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=27.7
Q ss_pred CceeeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 41 GFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 41 s~~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
++.+.. +..+.|+||||||||||+++|++...
T Consensus 232 ~l~i~~--~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKP--PRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCC--CCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCC--CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345667 77899999999999999999999764
No 434
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.75 E-value=0.00086 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+.+|+|+|++||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 435
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.0008 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997643
No 436
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.74 E-value=0.0008 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+.+++|+|++||||||+.+.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 437
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.73 E-value=0.00082 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..|+|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.73 E-value=0.00082 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
..|+|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 439
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.72 E-value=0.00078 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..++|+|.+|||||||++.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998753
No 440
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.72 E-value=0.00089 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
..+|+|+|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 441
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.71 E-value=0.00047 Score=62.27 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCCCceeeccCCeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 36 GGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 36 ~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln~l~g 71 (225)
.+..+.+++.+ +..+.|+|.+||||||++|+|..
T Consensus 156 ~G~pv~ldL~~--~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 156 AGEPVVADLAK--MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp TSCEEEEEGGG--SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEccc--CceEEEECCCCCCHHHHHHHHHH
Confidence 44457888888 88999999999999999999876
No 442
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.70 E-value=0.00095 Score=50.40 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 443
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.68 E-value=0.00099 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..++|+|++|||||||++.|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999998654
No 444
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.66 E-value=0.00067 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=17.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..+.|.|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999753
No 445
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.66 E-value=0.0011 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g 71 (225)
..++|+|++||||||+.+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 446
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.65 E-value=0.0012 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
..+|+|.|++||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.63 E-value=0.00075 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..+.|.||||+|||||+++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 5679999999999999999999865
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.62 E-value=0.0011 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999774
No 449
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.61 E-value=0.0015 Score=49.31 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=30.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcC---Ce-EEEeecC
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHN---AD-ITLRYDA 198 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~---~~-vi~~~~~ 198 (225)
.++.+.+||||++||+..+..+.+.+..+. .+ ++++|+.
T Consensus 81 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 81 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp SCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 577888999999999999999998887753 34 4445543
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.00047 Score=58.64 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=25.2
Q ss_pred CceeeccCCee--EEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 41 GFDVAKTGDAR--IGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 41 s~~i~~~~g~~--v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..+.. |.. +.+.||||+||||+++++++...
T Consensus 38 ~~~i~~--g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 38 RKFVDE--GKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHT--TCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 334444 544 89999999999999999998753
No 451
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.60 E-value=0.00095 Score=63.72 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHHH
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLS 67 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLln 67 (225)
..-.+||+++|+. +..++|.|.+|||||||..
T Consensus 23 ~hNLkni~v~iP~--~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 23 QHNLKDISVKVPR--DALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp STTCCSEEEEEES--SSEEEEESSTTSSHHHHHT
T ss_pred ccCCCCeeEEecC--CCEEEEECCCCCCHHHHHH
Confidence 3457899999999 9999999999999999974
No 452
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.57 E-value=0.0013 Score=53.87 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..|.|+|++||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0012 Score=52.71 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g 71 (225)
+++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 454
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.56 E-value=0.0015 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
+.+++|+|++||||||+.+.|+.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999974
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.55 E-value=0.0012 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g 71 (225)
.++|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 456
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.54 E-value=0.00089 Score=57.58 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.4
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+++ |..+.|.|+||+|||||+..++....
T Consensus 58 l~~--G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPR--GRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EET--TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446 89999999999999999888876543
No 457
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.52 E-value=0.0014 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.9
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..++.|+|||||||+|..+.|+..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998544
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.50 E-value=0.0015 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..|+|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999653
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.48 E-value=0.0015 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
.-.++|+|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999754
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.47 E-value=0.0016 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
++.|+|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 461
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.0016 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
..+|+|.|++||||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 462
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.42 E-value=0.0015 Score=62.93 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCCCCCCceeeccCCeeEEEEcCCCCCHHHHH
Q psy2924 35 GGGPGEGFDVAKTGDARIGFVGFPSVGKSTLL 66 (225)
Q Consensus 35 ~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLl 66 (225)
.-.+||+++|++ +..++|.|++|||||||.
T Consensus 12 hNLkni~~~ip~--~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPK--NRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEET--TSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCC--CcEEEEECCCCCcHHHHH
Confidence 357899999999 999999999999999996
No 463
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.42 E-value=0.0019 Score=51.21 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..+.|.||+|+|||||++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5579999999999999999998754
No 464
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.40 E-value=0.0012 Score=57.29 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..++|+|++|+|||||++.++....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987654
No 465
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0021 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..+.|.|++|+|||||++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998764
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.35 E-value=0.0018 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
..+|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 467
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.34 E-value=0.0016 Score=62.92 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=28.1
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHH
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLL 66 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLl 66 (225)
..-.+||+++|++ +..++|.|.+|||||||.
T Consensus 33 ~hNLkni~v~iP~--~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 33 EHNLRSVDLDLPR--DALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSSCCSEEEEEES--SSEEEEEESTTSSHHHHH
T ss_pred ccccCceeeeccC--CCEEEEECCCCCcHHHHH
Confidence 3458899999999 999999999999999995
No 468
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.33 E-value=0.0024 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..|+|+|++||||||+.+.|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 469
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.33 E-value=0.0017 Score=62.69 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCCCCCCCceeeccCCeeEEEEcCCCCCHHHHH
Q psy2924 34 GGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLL 66 (225)
Q Consensus 34 ~~~~~~is~~i~~~~g~~v~IiG~nGaGKSTLl 66 (225)
..-.+||+++|++ +..++|.|.+|||||||.
T Consensus 31 ~hNLkni~v~iP~--~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPR--GKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEET--TSEEEEEESTTSSHHHHH
T ss_pred cccCCceeeeccC--CcEEEEECCCCCCHHHHH
Confidence 3458899999999 999999999999999995
No 470
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0019 Score=54.93 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..+.|.||+|+|||||++.+++...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998653
No 471
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.25 E-value=0.0024 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g 71 (225)
..+.|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 472
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.24 E-value=0.0027 Score=49.49 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..+.|.||+|+|||||+++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999987653
No 473
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.20 E-value=0.0032 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.-+.|.||+|+|||||.++++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998744
No 474
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.17 E-value=0.0023 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..+.|.||||+|||||++++++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.17 E-value=0.0026 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
.+.|.||+|+|||||++.+++...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999987654
No 476
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.16 E-value=0.0031 Score=56.25 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.8
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.+.+ |.+++|+|++|+|||||++.|+...
T Consensus 147 pi~k--Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 147 PYIK--GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEET--TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhcc--CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3456 8899999999999999999987653
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.13 E-value=0.0035 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.112 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
|..+.|+||+|+|||||...|+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999999998654
No 478
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.12 E-value=0.0027 Score=56.38 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=26.8
Q ss_pred eeeccCCeeEEEEcCCCCCHHHHHHHHhCCCcc
Q psy2924 43 DVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75 (225)
Q Consensus 43 ~i~~~~g~~v~IiG~nGaGKSTLln~l~g~~~~ 75 (225)
-+++ |+.+.|.|+||+|||||+..+++...+
T Consensus 199 Gl~~--G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 199 GFQR--SDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp SBCT--TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667 999999999999999999999876543
No 479
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.10 E-value=0.0017 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+.+|+|.|++||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998763
No 480
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.04 E-value=0.0042 Score=49.55 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|.+|+|.|++||||||+.+.|...+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999976543
No 481
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.02 E-value=0.0031 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
...+.|.||+|+|||||++.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998754
No 482
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.01 E-value=0.0042 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.150 Sum_probs=24.2
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+++ |..+.|.|+||+|||||+..++..
T Consensus 119 l~~--G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IES--MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCS--SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 566 899999999999999999998874
No 483
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.01 E-value=0.0045 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
...+.|+|+|||||||+.+.|+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999999999754
No 484
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.01 E-value=0.0036 Score=51.38 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+.-+.|.||+|+|||||+++++....
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44699999999999999999987643
No 485
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.0035 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAG 71 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g 71 (225)
|+.++++|++||||||++..+..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 78999999999999998887754
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0045 Score=49.83 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+..|+|.|..||||||+.+.|...+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999998654
No 487
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.94 E-value=0.0042 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 51 RIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 51 ~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
.+.|.||+|+|||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.91 E-value=0.0038 Score=50.41 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=20.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|.+|+|-|++||||||+.+.|...+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999986554
No 489
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.90 E-value=0.0045 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+..++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 490
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.90 E-value=0.0033 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
+..+.|.||+|+|||||++++++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 34689999999999999999997653
No 491
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.88 E-value=0.0044 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..++|+||+|||||||.+.|+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999998754
No 492
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=95.88 E-value=0.006 Score=47.11 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=29.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHhhhcCC--e-EEEeec
Q psy2924 160 EPPNIDNQVPQSELDLDTVKTILSEYRIHNA--D-ITLRYD 197 (225)
Q Consensus 160 ~~~~lslDEp~~~LD~~~~~~i~~~l~~~~~--~-vi~~~~ 197 (225)
+++.+.+|||+++||+.....+.+.+.++.. . |+++|.
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 5678889999999999999999998877642 3 444444
No 493
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.86 E-value=0.0036 Score=51.99 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
..+.|.||||+||||+.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4799999999999999999998754
No 494
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.83 E-value=0.0052 Score=49.91 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS 74 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~ 74 (225)
|.+|+|.|++||||||+.+.|...+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.82 E-value=0.0039 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+.+|+|.|+.||||||+.+.|....
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 7799999999999999999998765
No 496
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.81 E-value=0.0088 Score=53.12 Aligned_cols=60 Identities=17% Similarity=0.326 Sum_probs=37.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC-------------cccccccc--ceeeccceEEEE---------cCc--eEEEEeC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY-------------SEVAAYEF--TTLTTVPGCIKY---------KGA--KIQLLDL 103 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~-------------~~v~~~~~--tt~~~~~G~i~~---------~g~--~i~~~d~ 103 (225)
..|+|+|+.++|||+|+|.|.+.. .+...|+. +....+.|..-| +|. .+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 468899999999999999776321 01222332 333345665433 333 4778899
Q ss_pred CCCCCC
Q psy2924 104 PGIIEG 109 (225)
Q Consensus 104 ~g~~~~ 109 (225)
.|....
T Consensus 148 EG~~d~ 153 (457)
T 4ido_A 148 QGTFDS 153 (457)
T ss_dssp CCBTCT
T ss_pred cCCCCc
Confidence 997643
No 497
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.81 E-value=0.0059 Score=51.78 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=34.8
Q ss_pred CeeEEEEcCCCCCHHHHHHHHhCCCc-cc---------cccccceeeccceEEEEcCceEEEEeC
Q psy2924 49 DARIGFVGFPSVGKSTLLSTLAGVYS-EV---------AAYEFTTLTTVPGCIKYKGAKIQLLDL 103 (225)
Q Consensus 49 g~~v~IiG~nGaGKSTLln~l~g~~~-~v---------~~~~~tt~~~~~G~i~~~g~~i~~~d~ 103 (225)
+..++|+||+|||||||...|+.... .+ ...+.+|+.|..+.. .|.+..++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~--~gvphhlid~ 65 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEM--DGVPHHLIDI 65 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHH--TTCCEESSSC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHH--cCCCEEEecc
Confidence 45789999999999999999986553 11 123445555555433 4555555553
No 498
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.80 E-value=0.0054 Score=51.89 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=24.2
Q ss_pred eeccCCeeEEEEcCCCCCHHHHHHHHhCC
Q psy2924 44 VAKTGDARIGFVGFPSVGKSTLLSTLAGV 72 (225)
Q Consensus 44 i~~~~g~~v~IiG~nGaGKSTLln~l~g~ 72 (225)
+++ |..+.|.|+||+|||||...++..
T Consensus 104 l~~--G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IET--RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EET--TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCC--CcEEEEECCCCCCHhHHHHHHHHH
Confidence 567 899999999999999999988764
No 499
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.80 E-value=0.00064 Score=55.55 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q psy2924 52 IGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 52 v~IiG~nGaGKSTLln~l~g~~ 73 (225)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999998753
No 500
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.79 E-value=0.0051 Score=52.29 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCC
Q psy2924 50 ARIGFVGFPSVGKSTLLSTLAGVY 73 (225)
Q Consensus 50 ~~v~IiG~nGaGKSTLln~l~g~~ 73 (225)
..++|+||+|||||||.+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998754
Done!