RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2924
(225 letters)
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 78.7 bits (194), Expect = 4e-18
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111
I G P+VGKS+ ++ ++ +V +Y FTT G +K K Q++D PG+++ A
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91
Query: 112 DGKGRGRQ--VIAVARTCSLIFIVLDVLKPLGHK-KLIEHELEGFGLRLNKEP 161
+ + + A+A +I ++D+ + G K + + +
Sbjct: 92 ENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 80.7 bits (200), Expect = 5e-18
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 8/132 (6%)
Query: 36 GGPGEGFDVA---KTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIK 92
G GE + A +G VG+P+ GKS+LL+ + + ++A Y FTTL+ G ++
Sbjct: 142 GEEGEKRRLRLELML-IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE 200
Query: 93 YKGAKIQLL-DLPGIIEGAKDGKGRGRQVIA-VARTCSLIFIVLDVLK-PLGHKKLIEHE 149
+ L D+PGIIEGA +GKG G + + +AR ++ VLD PL + + E
Sbjct: 201 VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR-TRVLLYVLDAADEPLKTLETLRKE 259
Query: 150 LEGFGLRLNKEP 161
+ + L + P
Sbjct: 260 VGAYDPALLRRP 271
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 80.3 bits (199), Expect = 5e-18
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAK-IQLLDLPGIIE 108
A +G VGFPSVGKSTLLS ++ ++A Y FTTL G ++ + + DLPG+IE
Sbjct: 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218
Query: 109 GAKDGKGRGRQVIA-VARTCSLIFIV----LDVLKPLGHKKLIEHELEGFGLRLNKEP 161
GA G G G Q + + RT ++ ++ L+ P I EL + LRL + P
Sbjct: 219 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 276
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 72.6 bits (178), Expect = 3e-15
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
+ G P+VGKSTLL L E+A+Y FTT G + + Q++D PG+++
Sbjct: 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDR 227
Query: 110 AKDGKGRG--RQVIAVARTCSLIFIVLDV 136
+ + ++A+ +LI + D
Sbjct: 228 PISERNEIEKQAILALRYLGNLIIYIFDP 256
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 55.7 bits (135), Expect = 2e-09
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 28/112 (25%)
Query: 51 RIGFVGFPSVGKSTLLS--TLAGVYSEVAAYEFTTL-------TTVPGC------IKYKG 95
IG VG P+VGKST S TL V E+A Y FTT+ +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNP 59
Query: 96 AK-----------IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 136
++++D+ G++ GA +G+G G + + R S + V+D
Sbjct: 60 QNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDA 111
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
++ G P+VGK++L + L G VA + T+ G YKG I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 45.2 bits (108), Expect = 3e-06
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+VGKST+ + L G + + T+ G +Y G K +++DLPG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 44.4 bits (106), Expect = 4e-06
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+VGKST+ + L G + + T+ G +Y G K +++DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 45.4 bits (108), Expect = 4e-06
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
+ VG P+VGK+T+ + L G+ V + T+ G ++Y+ + ++DLPGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 45.0 bits (107), Expect = 7e-06
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 52 IGFVGFPSVGKSTLLSTLAG----VYSEVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGI 106
I G +VGKS+ ++ L G + S+ A TT V ++ + L+D PG+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAG---TTTDPVYKSMELHPIGPVTLVDTPGL 93
Query: 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIE 147
+ + G+ R + V +V D ++
Sbjct: 94 DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVN 134
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 44.6 bits (106), Expect = 8e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
IG +G P+ GK+TL + L G V + T+ G ++ L+DLPG
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGT 60
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 44.2 bits (105), Expect = 1e-05
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
+G P+ GK+TL + L V + T+ G I++ DLPG+
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 42.8 bits (100), Expect = 4e-05
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSE---VAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGI 106
+ G GKS+ ++TL G+ +E A +T K+ + DLPGI
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 130
Query: 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEG---FGLRLNKEPPN 163
G+ + I+ + + F K +
Sbjct: 131 --GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188
Query: 164 IDNQVPQSELDLDTVKTILSEYRIH 188
I N+ D K +L + R++
Sbjct: 189 ITNEADGEPQTFDKEK-VLQDIRLN 212
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 41.7 bits (98), Expect = 8e-05
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG-VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
+ +G VGKS+ +++L G V+ ++ L V G I ++D PG++E
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97
Query: 110 AKDGKGRGRQVIAVARTCSL-IFIVLDVLKPLG----HKKLIEHELEGFG 154
+ ++ + + +D L K+++ + FG
Sbjct: 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFG 147
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 40.3 bits (95), Expect = 2e-04
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG-VYSEVAAYEFTTLTTVPGCIKYK-----GAKIQLLDLP 104
R+ VG P+ GKST+++ L G S V A PG K +++LD P
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRASSVGA--------QPGITKGIQWFSLENGVKILDTP 152
Query: 105 GII 107
GI+
Sbjct: 153 GIL 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 3e-04
Identities = 48/284 (16%), Positives = 82/284 (28%), Gaps = 106/284 (37%)
Query: 17 LKARIAKLRRELITPKGGGGGP------GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLA 70
L R L RE++T P E + G A + V L + +
Sbjct: 311 LDCRPQDLPREVLT-----TNPRRLSIIAESI---RDGLATWDN--WKHVNCDKLTTIIE 360
Query: 71 GVYSEVAAYE----FTTLTTVPGCIKYKGAKI--QLL----------DLPGIIEG----- 109
+ + E F L+ P A I LL D+ ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 110 --AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLG-----HKKLIEH--ELEGFGLRLNKE 160
K K T S+ I L++ L H+ +++H + F +
Sbjct: 416 LVEKQPKES---------TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLI 465
Query: 161 PPNIDN-----------QVPQSE---------LDL---------------------DTVK 179
PP +D + E LD +T++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 180 TILSEYRIHNADITLRYDATSDDLIDVV---EGNRIYVPCIYLL 220
L Y+ + D +Y+ + ++D + E N I LL
Sbjct: 526 Q-LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Score = 33.3 bits (75), Expect = 0.067
Identities = 41/316 (12%), Positives = 76/316 (24%), Gaps = 128/316 (40%)
Query: 21 IAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYE 80
KLR+ L+ + P + + G GK+ + + Y +
Sbjct: 137 YLKLRQALLELR-----PAKN----------VLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 81 FTTL-TTVPGCIKYKGAKIQLLDL---------------PGIIEGAKDGKGRGRQVIAVA 124
F + C + L L I + R+++
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 125 R----------------------TCSLIFI-----VLDVLKPLGHKKL-IEHELEGF--- 153
+C ++ V D L + ++H
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 154 ----------GLRLNKEPPNIDNQVPQS-------------------ELDLDTVKTILS- 183
R P + P+ ++ D + TI+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 184 --------EYRIH---------NADIT------LRYDATSDDLIDVVEG----------- 209
EYR +A I + +D D++ VV
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 210 --NRIYVPCIYLLNKI 223
+ I +P IYL K+
Sbjct: 422 KESTISIPSIYLELKV 437
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I +G P+ GK++L + + G V + T+ G + K +++ DLPGI
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV-KKNKDLEIQDLPGI 59
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 38.4 bits (90), Expect = 8e-04
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYK-----GAKIQ 99
K R +G P+VGKSTL++ LA + PG + G +++
Sbjct: 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD--------RPGITTSQQWVKVGKELE 168
Query: 100 LLDLPGII 107
LLD PGI+
Sbjct: 169 LLDTPGIL 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 37.6 bits (87), Expect = 0.002
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 17/161 (10%)
Query: 5 QKNKATAGHLGLLKARIAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKST 64
Q + +G A KL L K I +G VGKS+
Sbjct: 6 QTVREWSGINTFAPATQTKLLELLGNLKQ-----------EDVNSLTILVMGKGGVGKSS 54
Query: 65 LLSTLAG-VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD---GKGRGRQV 120
++++ G ++ ++ V G + ++D PG+IEG +
Sbjct: 55 TVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 114
Query: 121 IAVARTCSLIFIVLDVLKPL--GHKKLIEHELEGFGLRLNK 159
+ L+++ + K + + + FG +
Sbjct: 115 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 52/150 (34%)
Query: 5 QKNKATAGH-LG-------------------LLKARIAKLRRELITPKGGGGGPGEGFDV 44
+ AGH LG ++ R + + P+ G + +
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAV-PRDELGR--SNYGM 1809
Query: 45 AKTGDARIGFVGFP---------SVGKST--LLST-----------LAGVYSEVAAYEFT 82
R+ F VGK T L+ AG ++ A +
Sbjct: 1810 IAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG---DLRALD-- 1863
Query: 83 TLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112
T+T V IK + I L +E +
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 33.1 bits (75), Expect = 0.076
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 38/149 (25%)
Query: 54 FVGFPSVGKSTLLSTLAGVYSEVAAYEF-TTLTTVPGCIKYKGAKIQLLDLPGIIEGAKD 112
F G S+G+ L++LA V S + + V Y+G +Q+ +P +D
Sbjct: 1759 FAGH-SLGEYAALASLADVMS------IESLVEVV----FYRGMTMQVA-VP------RD 1800
Query: 113 GKGRGRQ-VIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRL---NKEPPNIDNQV 168
GR +IA+ + L+ ++E + G + N N++NQ
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQ-----YVVERVGKRTGWLVEIVNY---NVENQ- 1851
Query: 169 PQ---S-EL-DLDTVKTILSEYRIHNADI 192
Q + +L LDTV +L+ ++ DI
Sbjct: 1852 -QYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 26.9 bits (59), Expect = 6.6
Identities = 32/197 (16%), Positives = 52/197 (26%), Gaps = 74/197 (37%)
Query: 17 LKARIAKLRRELITPKGG--------G------GGPGE---GFDV------AKTGD--AR 51
++ + K L P G G GP + G ++ A +G +R
Sbjct: 349 VQDYVNKTNSHL--PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 52 IGF--------VGFPSVGK---STLL-STLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99
I F F V S LL + ++ + +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN----------VSFNAKD-- 454
Query: 100 LLDLPGIIEGAKDGKG-RGRQVIAVARTCSLIFI---------------VLDVLKP---L 140
+ +P + DG R R I +LD P
Sbjct: 455 -IQIP--VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-FGPGGAS 510
Query: 141 GHKKLIEHELEGFGLRL 157
G L +G G+R+
Sbjct: 511 GLGVLTHRNKDGTGVRV 527
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 36.9 bits (85), Expect = 0.003
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT-----LTTVPGCIKYKGAKIQLLDLPG 105
+ VG +VGKST ++ + +S+ TT T I + L D PG
Sbjct: 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPG 220
Query: 106 II 107
II
Sbjct: 221 II 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 36.8 bits (85), Expect = 0.003
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG------CIKYKGAKIQLLDLP 104
+ VG +VGKST ++ + T + PG I + L D P
Sbjct: 164 DVYVVGCTNVGKSTFINRIIE--EATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTP 220
Query: 105 GII 107
GII
Sbjct: 221 GII 223
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 36.2 bits (83), Expect = 0.008
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 2 ARTQKNKATAGHLGLLKAR---IAKLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFP 58
+ G+L +K + I K+ G + + +RI +G
Sbjct: 649 TDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPN 708
Query: 59 SVGKSTLLSTLAG 71
GKSTL++ L G
Sbjct: 709 GAGKSTLINVLTG 721
Score = 30.8 bits (69), Expect = 0.41
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSE 75
R G G GKSTL+ +A +
Sbjct: 462 RRYGICGPNGCGKSTLMRAIANGQVD 487
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 35.0 bits (80), Expect = 0.011
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 40 EGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG---VYSEVAAYEFTTLTTVPGCIKYKGA 96
E R+ VG GKS +++ G +S + A T T G ++
Sbjct: 12 ENLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTT-GSRRWDKC 70
Query: 97 KIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS 128
++++D P I G + S
Sbjct: 71 HVEVVDTPDIFSSQVSKTDPGCEERGHCYLLS 102
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 34.6 bits (79), Expect = 0.013
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 38 PGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKG 95
G G + RI VG GKS +++ G V+ A + T +K
Sbjct: 18 GGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE 77
Query: 96 AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCS----LIFIVLDVLKPLGH-KKLIEHEL 150
++ ++D PGI + +++I S + +V+ + + K E L
Sbjct: 78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKIL 137
Query: 151 EGFG 154
+ FG
Sbjct: 138 KMFG 141
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 34.8 bits (80), Expect = 0.015
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSE 75
+L + L+ E + K R+G G P GKST + + +E
Sbjct: 48 ELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 34.0 bits (78), Expect = 0.033
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 45 AKTGDA-RIGFVGFPSVGKSTLLSTLAGVYSE 75
+TG A R+G G P VGKST + L + +
Sbjct: 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 33.6 bits (77), Expect = 0.038
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 46 KTGDA-RIGFVGFPSVGKSTLLSTLAGVYSE 75
G+ R+G G P GKST L +
Sbjct: 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 33.7 bits (77), Expect = 0.039
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 46 KTGDA-RIGFVGFPSVGKSTLLSTLAGVYSE 75
+G+A R+G G P VGKST + L E
Sbjct: 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 33.2 bits (76), Expect = 0.040
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 39 GEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP--GCIKYKGA 96
G G + I G + GK++LL+ L V T+ + Y G+
Sbjct: 38 GGGSGGGGSYQPSIIIAGPQNSGKTSLLTLL--TTDSVR----PTVVSQEPLSAADYDGS 91
Query: 97 KIQLLDLPG 105
+ L+D PG
Sbjct: 92 GVTLVDFPG 100
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 33.6 bits (78), Expect = 0.041
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 51 RIGFVGFPSVGKSTLLS--TLAGVYSEVAAYEFTT-----------------LTTVPGCI 91
+G VG P+VGKSTL + T A A Y F T L
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKG 60
Query: 92 KYKG----AKIQLLDLPGIIEGAKDGKGRGRQ 119
+ ++ +D+ G+++GA G+G G Q
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQ 92
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 33.4 bits (77), Expect = 0.044
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 25/84 (29%)
Query: 16 LLKARIAKLRRELITPKGGGGGPGEGFDVA---------KTGDARIGFVGFPSVGKSTLL 66
K RI KL +EL E + + IG VG+ + GK++L
Sbjct: 148 FYKRRINKLMKEL-----------ESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLF 196
Query: 67 STL--AGVYSEVAAYEFTTL-TTV 87
++L + FTT+
Sbjct: 197 NSLTGLTQKVDTKL--FTTMSPKR 218
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 33.2 bits (77), Expect = 0.051
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
+ +G P+VGKS+L++ + G + S VA TT V Y + ++D G+
Sbjct: 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG---TTRDAVDTSFTYNQQEFVIVDTAGM 233
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.4 bits (74), Expect = 0.068
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP--GCIKYKGAKIQLLDL 103
K+ I G + GK++LL+ L V T+ + Y G+ + L+D
Sbjct: 9 KSYQPSIIIAGPQNSGKTSLLTLL--TTDSVR----PTVVSQEPLSAADYDGSGVTLVDF 62
Query: 104 PG 105
PG
Sbjct: 63 PG 64
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 31.5 bits (72), Expect = 0.13
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGC----IKYKGAKIQLLDLPGI 106
I F G +VGKSTL+ L G PG I+ + +++D+PG
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKVRRGK--------RPGVTRKIIEIEWKNHKIIDMPGF 54
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 31.7 bits (73), Expect = 0.15
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
++ VG P+VGKSTL + + + S + TT V + G K +D G+
Sbjct: 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPG---TTRDPVDDEVFIDGRKYVFVDTAGL 238
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 31.7 bits (73), Expect = 0.17
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 51 RIGFVGFPSVGKSTLLSTL--AGVYSEVAAYEFTT------LTTVPG------CIKYKGA 96
+ G VG P+VGKST + + + A Y + T VP C YK
Sbjct: 22 KTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPK 80
Query: 97 KIQ-----LLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL 134
+ D+ G+ +GA G G G ++ R I+ V+
Sbjct: 81 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 31.7 bits (73), Expect = 0.19
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT------LTTVPG------CIKYKGAKI 98
+IG VG P+VGKST + L + + F T VP C +K A
Sbjct: 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83
Query: 99 -----QLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL 134
++D+ G+++GA +G+G G ++ C IF +
Sbjct: 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLT 124
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 31.2 bits (72), Expect = 0.20
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT 83
+ G VG P+VGKSTL + L E A Y F T
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCT 36
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 31.4 bits (72), Expect = 0.21
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 55 VGFPSVGKSTLLSTLAG-----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
VG P+VGKSTLL+ L V +++ TT + I +G +++D G+
Sbjct: 249 VGKPNVGKSTLLNRLLNEDRAIV-TDIPG---TTRDVISEEIVIRGILFRIVDTAGVRSE 304
Query: 110 AKD-----GKGRGRQVIAVARTCSLIFIVLDVLKPL 140
D G R Q I A ++ VLD PL
Sbjct: 305 TNDLVERLGIERTLQEIEKA---DIVLFVLDASSPL 337
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 30.9 bits (70), Expect = 0.25
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP-------------GCIKYKGA 96
+I + G GK+T L + E E +L T G +K
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 97 KIQLLDLPG 105
+ L +PG
Sbjct: 75 RFHLYTVPG 83
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 29.7 bits (68), Expect = 0.61
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 52 IGFVGFPSVGKSTLLSTLAG 71
+ VG P+VGKSTLL+ L G
Sbjct: 10 VAIVGKPNVGKSTLLNNLLG 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 30.2 bits (69), Expect = 0.62
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 55 VGFPSVGKSTLLSTLAG-----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI--- 106
G P+ GKSTLL+TL G V S + TT + C + +L D G+
Sbjct: 239 AGKPNAGKSTLLNTLLGQERAIV-SHMPG---TTRDYIEECFIHDKTMFRLTDTAGLREA 294
Query: 107 ---IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPL 140
IE +G R R +A A LI +LD+
Sbjct: 295 GEEIE--HEGIRRSRMKMAEA---DLILYLLDLGTER 326
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.6 bits (66), Expect = 0.85
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYS-EVAAYEFTTLTTVPGCIKYKG-AKIQLLDLPGII 107
+++ +G GKS++ S + YS T+ +++ G + L D G
Sbjct: 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63
Query: 108 EGAKDGKGRGRQVIAVARTCSLIFIVLDV 136
+ +Q + + ++ V DV
Sbjct: 64 VFME--NYFTKQKDHIFQMVQVLIHVFDV 90
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 29.4 bits (67), Expect = 0.90
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 55 VGFPSVGKSTLLSTLAG-----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI--- 106
VG P+VGKS+LL+ + V +++ TT V + G +Q+LD GI
Sbjct: 230 VGRPNVGKSSLLNAWSQSDRAIV-TDLPG---TTRDVVESQLVVGGIPVQVLDTAGIRET 285
Query: 107 ---IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPL 140
+E K G R RQ A L+ + +D
Sbjct: 286 SDQVE--KIGVERSRQAANTA---DLVLLTIDAATGW 317
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 29.4 bits (67), Expect = 0.94
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 52 IGFVGFPSVGKSTLLSTLAG 71
+ VG P+VGKSTLL+ L G
Sbjct: 13 VAIVGKPNVGKSTLLNNLLG 32
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin,
death domain, signaling protein; NMR {Homo sapiens}
Length = 102
Score = 27.9 bits (62), Expect = 1.0
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 117 GRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELD-- 174
G + R + + L+ +L EL+ F L L + ++P ++
Sbjct: 1 GHMLRTAGRDG--LCRLSTYLE-----ELEAVELKKFKLYLGTATELGEGKIPWGSMEKA 53
Query: 175 --LDTVKTILSEYRIHNA-DITLR 195
L+ + +++ + A + L
Sbjct: 54 GPLEMAQLLITHFGPEEAWRLALS 77
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 29.2 bits (66), Expect = 1.2
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 23/107 (21%)
Query: 52 IGFVGFPS-VGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110
+ +G + GK+TL+ LAG + L + K KI
Sbjct: 381 LVMMG-ENGTGKTTLIKLLAGALKPDEGQDIPKLN-----VSMKPQKIAP---------- 424
Query: 111 KDGKGRGRQVIA--VARTCSLIFIVLDVLKPLGHKKLIE---HELEG 152
G RQ+ + DV+KPL +I+ L G
Sbjct: 425 -KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSG 470
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.8 bits (64), Expect = 1.2
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP------GCIKYKG-AKIQLLDL 103
RI +G GKS++ V+ +++ E TL I Q+ D
Sbjct: 22 RILLMGLRRSGKSSIQKV---VFHKMSPNE--TLFLESTNKIYKDDISNSSFVNFQIWDF 76
Query: 104 PGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPN 163
PG D + R + V+D L + K P+
Sbjct: 77 PGQ----MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEA---LTRLHITVSKAYKVNPD 129
Query: 164 I 164
+
Sbjct: 130 M 130
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 29.0 bits (66), Expect = 1.2
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
Query: 53 GFV---GFPSVGKSTLLSTLAG 71
GF+ G P+VGKSTLL+ L G
Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLG 30
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.6 bits (64), Expect = 1.4
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP---GCIKY---KGAKIQ 99
K+ + FVG GK+ L L + + T T++ K +G +
Sbjct: 4 KSSQRAVLFVGLCDSGKTLLFVRL--LTGQYR----DTQTSITDSSAIYKVNNNRGNSLT 57
Query: 100 LLDLPG 105
L+DLPG
Sbjct: 58 LIDLPG 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 28.8 bits (65), Expect = 1.5
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 29/111 (26%)
Query: 51 RIGFVGFPS-VGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGA---KIQLLDLPGI 106
IG VG P+ +GK+T + LAGV G +++ K Q +
Sbjct: 384 VIGIVG-PNGIGKTTFVKMLAGVEEPTE-----------GKVEWDLTVAYKPQYIKA--- 428
Query: 107 IEGAKDGKGRGRQVIA--VARTCSLIFIVLDVLKPLGHKKLIE---HELEG 152
+ +G ++++ + + F ++LKPLG L + +L G
Sbjct: 429 -----EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 474
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.6 bits (63), Expect = 1.7
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 98 IQLLDLPGIIEGAKDGKGRGRQVIAVART----CSLIFIVLDVLKPLGHKKLIEHELEGF 153
I ++D PGI+ GAK RG AV R LI ++ D HK I E
Sbjct: 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDA-----HKLEISDEFSEA 210
Query: 154 GLRLNK 159
L
Sbjct: 211 IGALRG 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.9 bits (63), Expect = 1.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 55 VGFPSVGKSTLLSTLAG 71
G P+ GKS+LL+ LAG
Sbjct: 10 AGRPNAGKSSLLNALAG 26
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.3 bits (60), Expect = 2.7
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 52 IGFVGFPSVGKSTLLSTL 69
VG+ GK+TL+
Sbjct: 7 WQVVGYKHSGKTTLMEKW 24
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A;
dynamin-like protein 1A, GTPase, membrane fission,
motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB:
3t35_A*
Length = 360
Score = 27.9 bits (62), Expect = 2.9
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 23 KLRRELITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVGKSTLLSTLAGV 72
K++R G G I VG S GKS++L ++ G
Sbjct: 10 KIQRACTAL--GDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 28.0 bits (61), Expect = 3.4
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY 93
R+ +G GKST L+ L G + + T V ++Y
Sbjct: 71 RLLVLGDMKRGKSTFLNALIG--ENLLPSDVNPCTAVLTVLRY 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 26.9 bits (59), Expect = 4.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
I G P VGK+TL LA
Sbjct: 13 NILLTGTPGVGKTTLGKELA 32
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 27.2 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
RIG VGKSTLL +
Sbjct: 73 RIGIFAGSGVGKSTLLGMIC 92
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 26.9 bits (59), Expect = 4.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 52 IGFVGFPSVGKSTLLSTL 69
+ VG GK+TL++ +
Sbjct: 5 LSIVGTSDSGKTTLITRM 22
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.7 bits (58), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 52 IGFVGFPSVGKSTLLSTL 69
+ F + GK+TLL L
Sbjct: 9 LAFAAWSGTGKTTLLKKL 26
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Length = 96
Score = 25.9 bits (57), Expect = 4.8
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 132 IVLDVLKPLGHKKLIE-----HELEGFG------LRLNKEPPNIDNQVPQSELDLDTVKT 180
+VLDVLKP+ +++ +L+G ++ E + + + L+ D ++
Sbjct: 7 LVLDVLKPIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRK 66
Query: 181 ILSEY--RIHNAD 191
+L E IH+ D
Sbjct: 67 MLEEEGCAIHSID 79
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 27.3 bits (61), Expect = 4.9
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 29/110 (26%)
Query: 52 IGFVGFPS-VGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKI---QLLDLPGII 107
IG VG P+ +GK+T + LAGV G I++ Q +
Sbjct: 315 IGIVG-PNGIGKTTFVKMLAGVEEPTE-----------GKIEWDLTVAYKPQYIKA---- 358
Query: 108 EGAKDGKGRGRQVIA--VARTCSLIFIVLDVLKPLGHKKLIE---HELEG 152
D +G ++++ A + F ++LKPLG L + +EL G
Sbjct: 359 ----DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSG 404
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT,
FAK, LD2, LD4, fusion protein, chimera protei
transferase,cell adhesion; NMR {Gallus gallus} PDB:
2l6g_A 2l6h_A
Length = 215
Score = 26.8 bits (58), Expect = 5.1
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 120 VIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVK 179
V V + +D P+ E+E LN + + N++ ++ + T
Sbjct: 41 VKEVGLALRTLLATVDESLPVLPASTHR-EIEMAQKLLNSDLAELINKMKLAQQYVMT-- 97
Query: 180 TILSEYRIHNADITLRYDATSDDLIDVVEGNRIYVP 215
++ EY+ + +L+DV++ R+ +
Sbjct: 98 SLQQEYKKQMLTAAHALAVDAKNLLDVIDQARLKMI 133
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 26.8 bits (60), Expect = 5.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 61 GKSTLLSTLAG 71
GKSTLL+ +AG
Sbjct: 38 GKSTLLARMAG 48
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 26.3 bits (59), Expect = 6.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ VG P+VGKS+L + L
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLK 23
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 26.6 bits (58), Expect = 6.1
Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG-VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
+ G P VG +T + E Y+ + +V + + + D ++
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 64
Query: 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHE 149
+ + +A + +D H + +
Sbjct: 65 ETQKRIQKMAGRKIAEMAKESPVAVD-----THSTVSTPK 99
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 26.9 bits (60), Expect = 6.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
R+G VGKS LL +A
Sbjct: 159 RMGLFAGSGVGKSVLLGMMA 178
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 26.2 bits (58), Expect = 7.3
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 54 FVGFPSVGKSTLLSTLA-GVYSEVAAYEFT 82
VG GK+TLL L S++ T
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 26.1 bits (58), Expect = 7.6
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP------GCIKYKGAKIQLLD 102
+ + +G + GK+T+++ L + +P K + D
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKP-------SNAQSQNILPTIGFSIEKFKSSSLSFTVFD 73
Query: 103 LPG 105
+ G
Sbjct: 74 MSG 76
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A*
3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A*
1q1b_A
Length = 381
Score = 26.4 bits (59), Expect = 8.2
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 54 FVGFPS-VGKSTLLSTLAG 71
FVG PS GKSTLL +AG
Sbjct: 34 FVG-PSGCGKSTLLRMIAG 51
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 25.8 bits (56), Expect = 9.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
I G P GK+++ +A
Sbjct: 12 NILITGTPGTGKTSMAEMIA 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.141 0.405
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,469,789
Number of extensions: 216666
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 114
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)