RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2924
(225 letters)
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 76.1 bits (186), Expect = 7e-18
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIE 108
A +G VGFPSVGKSTLLS ++ ++A Y FTTL G ++ G + DLPG+IE
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGH 142
GA G G G Q + +I V+D+ G
Sbjct: 62 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR 95
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 74.3 bits (181), Expect = 3e-17
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY-KGAKIQLLDLPGIIE 108
A +G VG+P+ GKS+LL+ + + ++A Y FTTL+ G ++ + + L D+PGIIE
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61
Query: 109 GAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQV 168
GA +GKG G + + ++ VLD + G P++
Sbjct: 62 GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121
Query: 169 PQSELDLDTVKTILSEYRIHNADI 192
L+ + VK + +
Sbjct: 122 KVDLLEEEAVKALADALAREGLAV 145
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 74.2 bits (181), Expect = 3e-16
Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 50/223 (22%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLT-------TVPGC------------- 90
IG VG P+VGKST S V E+A Y FTT+ +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 91 ----IKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLD----------- 135
++++D+ G++ GA +G+G G + + R S + V+D
Sbjct: 62 YEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQP 121
Query: 136 --VLKPLGHKKLIEHELEGFGL--------RLNKEPPNIDNQVPQSELDLDTVKTILSE- 184
P+ + +E E++ + + K ++ + + + +
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEND 181
Query: 185 --YRIHNADITLRYDATSDD--LIDVVEGNRIYVPCIYLLNKI 223
+H ++ S D L E R+ P + NK
Sbjct: 182 VWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKA 224
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 72.7 bits (178), Expect = 5e-16
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 29/129 (22%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTL------TTVP--------GCIKYKG- 95
+ G VG P+VGKSTL + L E A Y F T+ +P +K +
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERI 63
Query: 96 --AKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLK------------PLG 141
++ +D+ G++ GA G+G G + +A R I V+ + PL
Sbjct: 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLD 123
Query: 142 HKKLIEHEL 150
I EL
Sbjct: 124 DIDTINTEL 132
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 63.3 bits (153), Expect = 1e-12
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 51 RIGFVGFPSVGKSTLLS--TLAGVYSEVAAYEFTTL------TTVPGCIKYKGAKI---- 98
+ G VG P+VGKST T + + A Y + T+ VP +
Sbjct: 12 KTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPK 70
Query: 99 -------QLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLD 135
+ D+ G+ +GA G G G ++ R I+ V+
Sbjct: 71 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVR 114
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 50.7 bits (120), Expect = 9e-09
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY-SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
R+ VG P+VGKSTLL+ L + V TT + I +G +++D G+
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 110 AKD--GKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHE 149
D + + + ++ VLD PL + E
Sbjct: 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE 103
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 43.6 bits (101), Expect = 4e-06
Identities = 19/136 (13%), Positives = 38/136 (27%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110
+ F G + GKS+ L+TL S + T + + K +
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEV 77
Query: 111 KDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVPQ 170
+ R Q + V+ L + + + ++ +
Sbjct: 78 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 137
Query: 171 SELDLDTVKTILSEYR 186
+L K L+ R
Sbjct: 138 DKLASGARKAQLNMVR 153
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 43.5 bits (101), Expect = 4e-06
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY 93
A I F G +VGKSTL+ L G T + K
Sbjct: 1 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN 44
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 44.0 bits (103), Expect = 7e-06
Identities = 26/137 (18%), Positives = 41/137 (29%), Gaps = 7/137 (5%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSE---VAAYEFTTLTTVP-GCIKYKGAKIQLLDLPGI 106
+ G GKS+ ++TL G+ +E A +T + DLPGI
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117
Query: 107 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKP--LGHKKLIEHELEGFGLRLNKEPPNI 164
++ I I K + K I + F K +I
Sbjct: 118 GSTNFPPDTYLEKMKF-YEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 176
Query: 165 DNQVPQSELDLDTVKTI 181
N+ D K +
Sbjct: 177 TNEADGEPQTFDKEKVL 193
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 42.4 bits (98), Expect = 1e-05
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 3/166 (1%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEF-TTLTTVPGCIKYKGAKIQLLDLP 104
K+ I VG P+VGKSTLL+ L G + + + TT + G + +D P
Sbjct: 2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
Query: 105 GIIEGAKDGKGRGRQVIAVARTCSL--IFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPP 162
G+ K R A + + + V++ + +++ ++L +
Sbjct: 62 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN 121
Query: 163 NIDNQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVE 208
+DN +++L + I+ D + +V
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 41.3 bits (95), Expect = 2e-05
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY-SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104
++ G P+ GKS+LL+ LAG + V TT + I G + ++D
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 57
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 41.7 bits (97), Expect = 3e-05
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGV-YSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
I +G VGKS+ ++++ G ++ ++ V G + ++D PG+IEG
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93
Query: 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQV 168
+ + ++ ++ L ++ + + I N+
Sbjct: 94 GYINDMALNIIKSFLLDKTIDVLLYVD--RLDAYRVDNLDKLVAKAITDSFGKGIWNKA 150
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 39.4 bits (90), Expect = 9e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAGVY-SEVAAYEFTT 83
A + VG P+VGKSTL + L + V E T
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVT 35
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 39.3 bits (90), Expect = 1e-04
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY-SEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
++ VG P+VGKSTL + + + V+ TT V + G K +D G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 38.6 bits (88), Expect = 2e-04
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 46 KTGDARIGFVGFPSVGKSTLLSTLAGVY-SEVAAYEFTTLTTVPGCIKYKGAKIQ 99
KT + VG P+VGKSTLL+ L GV + ++ TT + G + +I
Sbjct: 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIV 56
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 38.6 bits (88), Expect = 2e-04
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGI 106
I G +VGKS+ +++L +A T ++ +D+PG
Sbjct: 25 EIALAGRSNVGKSSFINSLIN-RKNLARTSSKPGKTQTLNFYIINDELHFVDVPGY 79
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 35.6 bits (81), Expect = 0.002
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
+I +G SVGK++ L A + K K+Q+ D G
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 35.8 bits (81), Expect = 0.002
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLP 104
I G + GK++LL+ L V Y G+ + L+D P
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTT--DSVRP--TVVSQEPLSAADYDGSGVTLVDFP 54
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 33.5 bits (75), Expect = 0.010
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKY 93
RI +G GK+T+L L E T G
Sbjct: 7 RILILGLDGAGKTTILYRLQV-------GEVVTTIPTIGFNVE 42
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 32.5 bits (73), Expect = 0.019
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
+I +G VGKS+LL E+AA + AK+ + D G
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 32.7 bits (73), Expect = 0.025
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111
+ FVG GK+ L L + + T++T K + L L +
Sbjct: 3 VLFVGLCDSGKTLLFVRL--LTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHES 59
Query: 112 DGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPP 162
+ + AR + + + +++ + L P
Sbjct: 60 LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 110
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.9 bits (71), Expect = 0.028
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
R+ +G + GK+T+L G +V TL ++++G K+ + D+ G
Sbjct: 4 RLLMLGLDNAGKTTILKKFNG--EDVDTIS-PTLGFNIKTLEHRGFKLNIWDVGG 55
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 32.3 bits (72), Expect = 0.029
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYS 74
+I G P VGK+TL+ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLG 25
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 32.5 bits (73), Expect = 0.030
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGII 107
R +G P+VGKSTL++ LA +A T G +++LLD PGI+
Sbjct: 114 RALIIGIPNVGKSTLINRLAK--KNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL 168
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 32.0 bits (71), Expect = 0.034
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT 83
+ +G S GKS L++ LA V++ +A+E+
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR 41
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 32.0 bits (71), Expect = 0.034
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLD 102
+ + VG GK+T ++ + + T+ I I+L D
Sbjct: 2 EMELTLVGLQYSGKTTFVNVI--ASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 53
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 31.8 bits (71), Expect = 0.035
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
+ +G GKS LL + + + K K+Q+ D G
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.7 bits (71), Expect = 0.036
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
+I +G VGKS LL I K K+Q+ D G
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 60
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.1 bits (72), Expect = 0.042
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 46 KTGDA-RIGFVGFPSVGKSTLLSTLA----GVYSEVAAYEFTTLTTV 87
G+ R+G G P GKST L +VA + V
Sbjct: 50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 96
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.6 bits (70), Expect = 0.044
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ F+G + GK+TLL L
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKN 22
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.1 bits (69), Expect = 0.061
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
+ F + GK+TLL L
Sbjct: 5 LAFAAWSGTGKTTLLKKLI 23
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.9 bits (69), Expect = 0.079
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPG 105
+I +G VGK+ L+ + + ++ G K+Q+ D G
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 30.8 bits (68), Expect = 0.095
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 50 ARIGFVGFPSVGKSTLLSTLAG 71
++ F+G + GK+TLL L
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKD 35
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 31.0 bits (69), Expect = 0.10
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 46 KTGDA-RIGFVGFPSVGKSTLLSTLA 70
+TG A R+G G P VGKST + L
Sbjct: 47 QTGRAIRVGITGVPGVGKSTTIDALG 72
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.5 bits (67), Expect = 0.11
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTT 83
R+ +G VGKSTL + AGV+ + +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL 37
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 30.2 bits (67), Expect = 0.12
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG---VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
++ VG VGK+ LL + + + K+Q+ D G
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.1 bits (67), Expect = 0.14
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKG--AKIQLLDLPG 105
++ +G VGK+ +L + + I+ G K+Q+ D G
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.0 bits (66), Expect = 0.16
Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 13/152 (8%)
Query: 51 RIGFVGFPSVGKSTLLSTLA-GVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEG 109
RI VG + GK+T+L L G + TV YK + D+ G +
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE----YKNISFTVWDVGGQDK- 56
Query: 110 AKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEGFGLRLNKEPPNIDNQVP 169
+ + V+D + E + ++ +
Sbjct: 57 ------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110
Query: 170 QSELDLDTVKTILSEYRIHNA-DITLRYDATS 200
Q + I + +H+ AT
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 142
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.9 bits (66), Expect = 0.16
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
RI +G + GK+TLL LA
Sbjct: 18 RILLLGLDNAGKTTLLKQLAS 38
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.8 bits (66), Expect = 0.16
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
++ +G VGKS LL + ++ + + K K+Q+ D G
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.8 bits (66), Expect = 0.17
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
VG+ GK+TL+
Sbjct: 4 WQVVGYKHSGKTTLMEKWV 22
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 29.6 bits (65), Expect = 0.28
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 52 IGFVGFPSVGKSTLLSTL 69
+ FVG GK+TL
Sbjct: 3 VVFVGTAGSGKTTLTGEF 20
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.2 bits (64), Expect = 0.30
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPG----CIKYKGAKIQLLDLP 104
RI +G GK+T+L L E T G + YK K+ + DL
Sbjct: 19 RILILGLDGAGKTTILYRLQI-------GEVVTTKPTIGFNVETLSYKNLKLNVWDLG 69
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.1 bits (64), Expect = 0.30
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100
++ +G VGKS LLS + + + I+ G I+
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 55
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 0.32
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ VG + GK+T+L +
Sbjct: 17 KVIIVGLDNAGKTTILYQFSM 37
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.32
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY 73
++ +G P VGKS L GV
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVE 25
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.8 bits (63), Expect = 0.32
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG--VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108
+I +G +VGK+ L A I + KIQL D G
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 29.2 bits (64), Expect = 0.33
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 17 LKARIAKLRRELITPKGGGGGPGEGFDV--AKTGDARIG----FVGFPSVGKSTLLSTLA 70
++ RI RE ++ + G G KT AR G +GKST + A
Sbjct: 1 MRERI----REHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 28.8 bits (63), Expect = 0.36
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
+ VG P GKST+ LA
Sbjct: 3 KAVLVGLPGSGKSTIGRRLA 22
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.9 bits (63), Expect = 0.37
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ +G VGK++L+
Sbjct: 4 KVIILGDSGVGKTSLMHRYVN 24
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.5 bits (62), Expect = 0.43
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ VG +VGKS+++
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCK 24
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 28.5 bits (62), Expect = 0.54
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ +G VGK++L++
Sbjct: 4 KVIILGDSGVGKTSLMNQYVN 24
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.8 bits (60), Expect = 0.74
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
I VG GKST+ LA
Sbjct: 4 NIFLVGPMGAGKSTIGRQLA 23
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.0 bits (61), Expect = 0.75
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTV 87
+ ++ +G GKST + + + + + T
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII-------HGSGVPTT 33
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.3 bits (59), Expect = 1.0
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 49 DARIGFVGFPSVGKSTLLSTLA 70
+ ++ G VGKS L+
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFL 23
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 1.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLT 85
+I +G GKST L + ++ +
Sbjct: 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGIHEYD 38
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 27.4 bits (59), Expect = 1.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGV 72
+G G GK+TL L +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEI 28
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.0 bits (58), Expect = 1.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
+I +G+ SVGKS+L
Sbjct: 6 KIAILGYRSVGKSSLTIQFVE 26
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 1.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ VG GK+T +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHL 24
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.9 bits (58), Expect = 1.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ +G VGKS+++
Sbjct: 6 KVCLLGDTGVGKSSIMWRFV 25
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 1.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 49 DARIGFVGFPSVGKSTLLSTLAG 71
D R+ G VGKS+L+
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVK 24
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.0 bits (59), Expect = 1.5
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 54 FVGFPSVGKSTLLSTLAG-----VYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIE 108
G VGKS+LL+ + V + TT + ++D PG
Sbjct: 100 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 159
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.1 bits (60), Expect = 1.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY 73
I F G GKST+ S L Y
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFY 52
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 27.2 bits (60), Expect = 1.6
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVY 73
+ G GK++LL + G
Sbjct: 65 LAITGSTGSGKTSLLMLILGEL 86
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 26.9 bits (58), Expect = 1.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
I G P GK+++ +A
Sbjct: 7 NILITGTPGTGKTSMAEMIA 26
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 1.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 50 ARIGFVGFPSVGKSTLLSTLA 70
+I VG GK+ LL A
Sbjct: 3 CKIVVVGDSQCGKTALLHVFA 23
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.9 bits (58), Expect = 1.7
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAK 111
G P VGKST+L+ + + G A
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDN---QGINNKIINYGDFMLATALKLGYAKDRDEMRKL 60
Query: 112 DGKGRGRQVIAVAR 125
+ + + I A+
Sbjct: 61 SVEKQKKLQIDAAK 74
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.8 bits (58), Expect = 1.7
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPG 105
RI +G + GK+T+L L S T+ + YK K + D+ G
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGG 65
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 27.2 bits (59), Expect = 1.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 54 FVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVP 88
G GKST + LA + E+ A E +++
Sbjct: 33 VFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 67
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 1.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 50 ARIGFVGFPSVGKSTLLSTLA 70
++ VG + GK+ LL +
Sbjct: 3 KKLVIVGDGACGKTCLLIVNS 23
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 2.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
I F+GF GKSTL LA
Sbjct: 3 IVFIGFMGSGKSTLARALA 21
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.8 bits (58), Expect = 2.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGV 72
+I VG S GKS++L G
Sbjct: 28 QIAVVGGQSAGKSSVLENFVGR 49
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.8 bits (59), Expect = 2.0
Identities = 33/181 (18%), Positives = 47/181 (25%), Gaps = 19/181 (10%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAA--------YEFTTLTTVPGCIKYKGAKIQLLD 102
IG VG GKSTL + Y + + LL+
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 90
Query: 103 LPGI--IEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELEG-------F 153
I I A G + + A + FI L G
Sbjct: 91 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 150
Query: 154 GLRLNKEPPNIDNQVPQSELDLDTVKTILSEYRIHNADITLRYDATSDDLIDVVEGNRIY 213
L P + S LD ++ I+ T+ + L V +RI
Sbjct: 151 ARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVII--IAHRLSTVKNADRII 208
Query: 214 V 214
V
Sbjct: 209 V 209
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 27.1 bits (59), Expect = 2.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGV 72
+I VG S GKS++L + G
Sbjct: 26 QIVVVGSQSSGKSSVLENIVGR 47
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.8 bits (59), Expect = 2.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY 73
VG GKST+ + L +Y
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLY 64
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.6 bits (57), Expect = 2.2
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ +G +VGKS+++
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVS 25
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 2.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ F+G SVGK++L++
Sbjct: 2 KLVFLGEQSVGKTSLITRFMY 22
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.5 bits (57), Expect = 2.4
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
+ G P VG +T
Sbjct: 4 VVVTGVPGVGSTTSSQLAM 22
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 91
Score = 25.4 bits (56), Expect = 2.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 132 IVLDVLKPLGHK-KLIE-----HELEGFG------LRLNKEPPNIDNQVPQSELDLDTVK 179
+VLDVLKP H+ K I ELE +++ NI + + LD + +K
Sbjct: 7 LVLDVLKP--HEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIK 64
Query: 180 TILSEY--RIHNAD 191
++ + IH+ D
Sbjct: 65 GVIEDMGGVIHSVD 78
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.4 bits (57), Expect = 2.4
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ +G VGK++L+
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCE 25
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 2.5
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100
+ R+G +G GKS+L+ + E T + G +
Sbjct: 5 ELRLGVLGDARSGKSSLIHRF--LTGSYQVLEKTESEQYKKEMLVDGQTHLV 54
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.1 bits (56), Expect = 2.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ +G +VGKS+L+
Sbjct: 8 KLVLLGESAVGKSSLVLRFV 27
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 2.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVY 73
+ FVG GKSTL++ + Y
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFY 68
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.5 bits (57), Expect = 2.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
I VG P+ GK+ + L
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.2 bits (56), Expect = 2.5
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ VG VGKS L
Sbjct: 8 KLVVVGGGGVGKSALTIQFI 27
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.4 bits (57), Expect = 2.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
I G P VGK+TL LA
Sbjct: 6 NILLTGTPGVGKTTLGKELA 25
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 26.1 bits (56), Expect = 2.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
I VG G +T+ LA
Sbjct: 5 IFMVGARGCGMTTVGRELA 23
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.1 bits (56), Expect = 2.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ VG VGKS L
Sbjct: 6 KVIMVGSGGVGKSALTLQFM 25
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
C-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 81
Score = 25.1 bits (55), Expect = 2.7
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 66 LSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGAKDG 113
L+TL+ + A +T + + G +I+++D + + A+ G
Sbjct: 35 LATLSNMTVSNAIRTLSTFVSE-RMLALDGKRIKIIDCDRLQKTARSG 81
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.1 bits (56), Expect = 2.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
+ VG +VGK+ LL + A
Sbjct: 11 KCVVVGDGAVGKTCLLMSYA 30
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.2 bits (56), Expect = 2.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ VG VGKS L
Sbjct: 6 KLVVVGDGGVGKSALTIQFF 25
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.1 bits (56), Expect = 2.8
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 51 RIGFVGFPSVGKSTLLSTLA-GVYSEVAAYEFTTLTTVPGCIKYKGAKIQL 100
+ VG +VGK+ LL + + Y T + G L
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTL 53
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 26.5 bits (58), Expect = 2.9
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFT 82
RI G +GKST +A S + +
Sbjct: 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.1 bits (56), Expect = 2.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ VG VGKS L L
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQ 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.0 bits (56), Expect = 3.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ +G VGKS L
Sbjct: 5 KVVVLGSGGVGKSALTVQFVT 25
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.2 bits (56), Expect = 3.0
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
I G+ + GK + L
Sbjct: 9 IFLTGYMNSGKDAIARALQ 27
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.0 bits (57), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 52 IGFVGFPS-VGKSTLLSTLAGVYS 74
+ VG P+ GKSTLL+ +AG+ S
Sbjct: 28 LHLVG-PNGAGKSTLLARMAGMTS 50
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.0 bits (56), Expect = 3.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
++ +G VGK+T L
Sbjct: 7 KLLALGDSGVGKTTFLYRYTD 27
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.2 bits (57), Expect = 3.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 52 IGFVGFPSVGKSTLLSTLAG 71
+ VG GKS L++ LAG
Sbjct: 35 VAIVGLYRTGKSYLMNKLAG 54
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.0 bits (57), Expect = 3.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVY 73
+ F G +GK+TLL T++
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYL 51
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 286
Score = 26.1 bits (57), Expect = 3.5
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 131 FIVLDVLKPLGH----KKLIEHELEGFGLRLNKEPPNIDNQVPQSELDLDTVKTILSEYR 186
F+ +L+ L +L+E + F LN+ P QV L T+
Sbjct: 132 FVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTL----T 187
Query: 187 IHNADITLRYDATS--DDLIDVVE 208
+ +I + DA + + LI ++
Sbjct: 188 LGEFEIAQQPDAKAYFEQLITQIQ 211
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.1 bits (56), Expect = 3.6
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 49 DARIGFVGFPSVGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQ 99
+ ++ +G GKST++ + ++ T T K Q
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQ 52
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.1 bits (57), Expect = 3.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 52 IGFVGFPS-VGKSTLLSTLAG 71
+G P+ GKS L +AG
Sbjct: 27 CVLLG-PTGAGKSVFLELIAG 46
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 26.0 bits (57), Expect = 3.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVY 73
+ VG GKST+ S + Y
Sbjct: 44 VALVGRSGSGKSTIASLITRFY 65
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 25.7 bits (55), Expect = 3.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
+ VG +VGK+ LL +
Sbjct: 7 KCVVVGDGAVGKTCLLISYT 26
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 25.7 bits (55), Expect = 3.8
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
++ +G VGKS+L++
Sbjct: 8 KVILLGDGGVGKSSLMNRYV 27
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.6 bits (55), Expect = 3.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 51 RIGFVGFPSVGKSTLLSTLAG 71
+ +G VGKS LL
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTD 25
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.0 bits (57), Expect = 4.1
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 17/81 (20%)
Query: 52 IGFVGFPS-VGKSTLLSTLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLDLPGIIEGA 110
I +G S GKST L + + G I G I L+
Sbjct: 31 ISIIG-SSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNINLVRDKDGQLKV 78
Query: 111 KDGKGRGRQVIAVARTCSLIF 131
D Q+ + +++F
Sbjct: 79 ADKN----QLRLLRTRLTMVF 95
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.8 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 42 FDVAKTGDARIGFVGFPS-VGKSTLLSTLAG 71
++ G+ R G +G PS GK+T + +AG
Sbjct: 26 INIEN-GE-RFGILG-PSGAGKTTFMRIIAG 53
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 25.7 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 51 RIGFVGFPSVGKSTLLSTLAGVYSEVAAYE 80
IG VG GK+TL L GV+++ + E
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEE 36
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 25.7 bits (56), Expect = 4.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVY 73
+G GKSTL++ + G
Sbjct: 33 TLIIGPNGSGKSTLINVITGFL 54
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.4 bits (55), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 42 FDVAKTGDARIGFVGFPS-VGKSTLLSTLAG 71
V G+ +G P+ GK+ L +AG
Sbjct: 21 LKVES-GE-YFVILG-PTGAGKTLFLELIAG 48
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.4 bits (54), Expect = 5.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
I G S GKS ++ L
Sbjct: 6 IILNGGSSAGKSGIVRCLQ 24
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 93
Score = 24.3 bits (53), Expect = 5.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 16/74 (21%)
Query: 132 IVLDVLKPLGHK-KLIE-----HELEGFG------LRLNKEPPNIDNQVPQSELDLDTVK 179
IVLD+LKP H+ + E EL G + ++KE NI + ++LD D +
Sbjct: 7 IVLDILKP--HEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEIT 64
Query: 180 TILSEY--RIHNAD 191
+ Y IH+ D
Sbjct: 65 RAIESYGGSIHSVD 78
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 25.1 bits (55), Expect = 6.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 52 IGFVGFPSVGKSTLLSTLAG 71
+ +G GK+T L +AG
Sbjct: 35 LVLLGPSGCGKTTTLRMIAG 54
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.4 bits (55), Expect = 6.2
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
RI G +GK+T
Sbjct: 7 RIYLDGAYGIGKTTAAEEFL 26
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 25.0 bits (53), Expect = 6.6
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
+ G GK+T+ L
Sbjct: 22 VWLTGLSGAGKTTVSMALE 40
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.3 bits (55), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 52 IGFVGFPSVGKSTLLSTLAG 71
+ FVG GKSTLL +AG
Sbjct: 29 VVFVGPSGCGKSTLLRMIAG 48
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.3 bits (55), Expect = 6.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVY 73
G +G GK+T L ++ +
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLI 52
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 25.3 bits (55), Expect = 6.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVY 73
+ +G GK+T LS +AG+
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLV 56
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 24.8 bits (53), Expect = 6.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 51 RIGFVGFPSVGKSTLLSTLA 70
+ +G VGKS LL
Sbjct: 6 KYIIIGDMGVGKSCLLHQFT 25
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 112
Score = 24.5 bits (53), Expect = 7.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 98 IQLLDLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDVLKPLGHKKLIEHELE 151
+ L GI+E ++ +G G + S+ LD L+ + KLI+ EL
Sbjct: 62 LNDLREKGIVETRQNKRGEGVR--GRTTLISIGTEPLDTLEAVI-TKLIKEELR 112
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.1 bits (54), Expect = 7.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 51 RIGFVGFPSVGKSTLLSTL 69
R+ +G GKST++ +
Sbjct: 8 RLLLLGAGESGKSTIVKQM 26
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 24.9 bits (54), Expect = 7.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 42 FDVAKTGDARIGFVGFPSVGKSTLLSTLAG 71
+V G+ + +G GK+T L +AG
Sbjct: 24 LEVKD-GE-FMILLGPSGCGKTTTLRMIAG 51
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 24.9 bits (53), Expect = 8.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 52 IGFVGFPSVGKSTLLSTLA 70
+ G P GKST+ LA
Sbjct: 7 LLLSGHPGSGKSTIAEALA 25
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.0 bits (53), Expect = 8.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 52 IGFVGFPSVGKSTLLSTLAGVYSE 75
+ G P VGK+TL+ + V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKS 27
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 24.6 bits (52), Expect = 9.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 52 IGFVGFPSVGKSTLLSTLAG 71
+ +G GK+TLL + G
Sbjct: 8 VSVLGHVDHGKTTLLDHIRG 27
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 23.5 bits (51), Expect = 9.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 176 DTVKTILSEYRIHNADITLRY 196
D V L+ Y + I R
Sbjct: 50 DKVTVELTPYDLSKGRIVFRS 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.405
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 818,551
Number of extensions: 37983
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 136
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)